Query psy17068
Match_columns 157
No_of_seqs 17 out of 19
Neff 1.9
Searched_HMMs 46136
Date Fri Aug 16 21:02:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17068.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17068hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10349 WWbp: WW-domain ligan 35.4 1.9E+02 0.0041 21.6 6.3 23 50-72 67-90 (116)
2 TIGR02549 CRISPR_DxTHG CRISPR- 29.2 33 0.00071 20.8 1.1 8 13-20 2-9 (26)
3 PF12811 BaxI_1: Bax inhibitor 25.4 72 0.0016 27.7 2.9 12 115-126 52-63 (274)
4 PF08226 DUF1720: Domain of un 24.2 2.5E+02 0.0054 20.0 5.0 8 72-79 32-39 (75)
5 PF05673 DUF815: Protein of un 23.5 42 0.00092 28.8 1.2 17 7-23 104-121 (249)
6 PF08226 DUF1720: Domain of un 22.0 3E+02 0.0066 19.6 5.1 8 65-72 32-39 (75)
7 KOG0921|consensus 20.9 3.3E+02 0.0072 28.8 6.9 58 49-107 1192-1249(1282)
8 COG2607 Predicted ATPase (AAA+ 20.2 54 0.0012 29.3 1.2 22 7-28 137-159 (287)
9 PF13249 Prenyltrans_2: Prenyl 16.3 50 0.0011 21.9 0.1 25 17-41 5-30 (113)
10 PF03829 PTSIIA_gutA: PTS syst 16.1 93 0.002 23.6 1.5 29 3-43 16-44 (117)
No 1
>PF10349 WWbp: WW-domain ligand protein; InterPro: IPR018826 This entry represents a sequence domain found in WW domain-binding protein that is characterised by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis []. This domain lies just downstream of IPR004182 from INTERPRO in many sequences.
Probab=35.42 E-value=1.9e+02 Score=21.59 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=8.8
Q ss_pred CCCCCC-CCCCCCCCCCCCCCCCC
Q psy17068 50 GYHNQN-RGYRNQIRGYRDQNHGY 72 (157)
Q Consensus 50 GYp~pN-~GYp~~~qGYP~q~qGY 72 (157)
.|..|. .+|..+..++...-.+|
T Consensus 67 ~y~~Pp~~~y~~pp~~~~~~~~~~ 90 (116)
T PF10349_consen 67 PYGAPPPPAYGPPPPGYPPPPAAY 90 (116)
T ss_pred CCCCCCCcccCCCCCCCCCCCCcC
Confidence 344433 34444433333333333
No 2
>TIGR02549 CRISPR_DxTHG CRISPR-associated DxTHG motif protein. This model describes a short region highly conserved between two otherwise substantially different CRISPR-associated (cas) proteins, TIGR02221 and TIGR01987. This region includes the motif [VIL]-D-x-[ST]-H-[GS].
Probab=29.16 E-value=33 Score=20.78 Aligned_cols=8 Identities=63% Similarity=0.958 Sum_probs=6.5
Q ss_pred EEEeeccc
Q psy17068 13 IFLDLTHQ 20 (157)
Q Consensus 13 ~~~~~~~~ 20 (157)
|.||+||-
T Consensus 2 vilDiTHG 9 (26)
T TIGR02549 2 IILDVTHG 9 (26)
T ss_pred EEEEecCc
Confidence 67899994
No 3
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=25.39 E-value=72 Score=27.69 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=5.8
Q ss_pred cchhhhhhcccc
Q psy17068 115 AIKTADTANKSA 126 (157)
Q Consensus 115 P~kt~~~~~~~~ 126 (157)
+-|-.|+.+|.+
T Consensus 52 ~MT~~~vv~KT~ 63 (274)
T PF12811_consen 52 RMTVDGVVNKTG 63 (274)
T ss_pred CcccccHHHHHH
Confidence 334445555543
No 4
>PF08226 DUF1720: Domain of unknown function (DUF1720); InterPro: IPR013182 This domain is found in different combinations with cortical patch components EF hand, SH3 and ENTH and is therefore likely to be involved in cytoskeletal processes. This family contains many hypothetical proteins.
Probab=24.18 E-value=2.5e+02 Score=20.03 Aligned_cols=8 Identities=25% Similarity=0.875 Sum_probs=3.2
Q ss_pred CCCCCCCC
Q psy17068 72 YREQNRGY 79 (157)
Q Consensus 72 YP~QnqGY 79 (157)
+.++.-||
T Consensus 32 ~qPQ~TG~ 39 (75)
T PF08226_consen 32 FQPQQTGF 39 (75)
T ss_pred cCcccccc
Confidence 33333344
No 5
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=23.47 E-value=42 Score=28.81 Aligned_cols=17 Identities=41% Similarity=0.759 Sum_probs=12.0
Q ss_pred cccceEEEEe-eccccCc
Q psy17068 7 LNEKFIIFLD-LTHQNGE 23 (157)
Q Consensus 7 ~~~~~~~~~~-~~~~~~~ 23 (157)
...|||||+| |+-..+|
T Consensus 104 ~~~kFIlf~DDLsFe~~d 121 (249)
T PF05673_consen 104 RPYKFILFCDDLSFEEGD 121 (249)
T ss_pred CCCCEEEEecCCCCCCCc
Confidence 3579999996 5555554
No 6
>PF08226 DUF1720: Domain of unknown function (DUF1720); InterPro: IPR013182 This domain is found in different combinations with cortical patch components EF hand, SH3 and ENTH and is therefore likely to be involved in cytoskeletal processes. This family contains many hypothetical proteins.
Probab=21.96 E-value=3e+02 Score=19.58 Aligned_cols=8 Identities=25% Similarity=0.862 Sum_probs=3.0
Q ss_pred CCCCCCCC
Q psy17068 65 YRDQNHGY 72 (157)
Q Consensus 65 YP~q~qGY 72 (157)
+.++.-||
T Consensus 32 ~qPQ~TG~ 39 (75)
T PF08226_consen 32 FQPQQTGF 39 (75)
T ss_pred cCcccccc
Confidence 33333333
No 7
>KOG0921|consensus
Probab=20.94 E-value=3.3e+02 Score=28.81 Aligned_cols=58 Identities=19% Similarity=0.148 Sum_probs=28.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccCCCCC
Q psy17068 49 RGYHNQNRGYRNQIRGYRDQNHGYREQNRGYREQNRGYRDHNRGYREQKRGYREQNRGY 107 (157)
Q Consensus 49 ~GYp~pN~GYp~~~qGYP~q~qGYP~QnqGYp~qnqGYP~qnqGYP~QnqGY~qqNqGY 107 (157)
+||-.+-.|+--.++||-....+|+..-.++-. ++++-..-+||...-.|+...-.|+
T Consensus 1192 GGYGggys~gGygsGGYGgsa~~~~~~~Gagvg-~GyrGvsrgGfrnnggGdyrnpggg 1249 (1282)
T KOG0921|consen 1192 GGYGGGYSGGGYGSGGYGGSAPSARANYGAGVG-NGYRGVSRGGFRNNGGGDYRNPGGG 1249 (1282)
T ss_pred CCcCCCCCCCCcCCCCCCCCCCCCCCCcccccc-CCCccccCCccccCCCCCCCCCCCC
Confidence 455444444444555555555555554443322 2333445556666555554444333
No 8
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=20.20 E-value=54 Score=29.26 Aligned_cols=22 Identities=36% Similarity=0.780 Sum_probs=16.9
Q ss_pred cccceEEEEe-eccccCcccccc
Q psy17068 7 LNEKFIIFLD-LTHQNGEGSWTS 28 (157)
Q Consensus 7 ~~~~~~~~~~-~~~~~~~~~~~~ 28 (157)
..+|||||.| |+...|+.++.+
T Consensus 137 ~~~kFIlFcDDLSFe~gd~~yK~ 159 (287)
T COG2607 137 RPEKFILFCDDLSFEEGDDAYKA 159 (287)
T ss_pred CCceEEEEecCCCCCCCchHHHH
Confidence 4689999995 888888776643
No 9
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=16.28 E-value=50 Score=21.90 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=0.0
Q ss_pred eccccCcccccc-CCCccchhhhccc
Q psy17068 17 LTHQNGEGSWTS-NNVPDTLDQYLSC 41 (157)
Q Consensus 17 ~~~~~~~~~~~~-~~~~~~~~~~~~~ 41 (157)
+..|+..|+|.. ...|++.+-++..
T Consensus 5 ~~~Q~~dGgw~~~~~~~~~~~T~~al 30 (113)
T PF13249_consen 5 LSRQNPDGGWGGFGGPSDVWDTAFAL 30 (113)
T ss_dssp HHHB-TTSSBBSSTS-BEHHHHHHHH
T ss_pred HHHcCCCCCCcCCCCCCCHHHHHHHH
No 10
>PF03829 PTSIIA_gutA: PTS system glucitol/sorbitol-specific IIA component; InterPro: IPR004716 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. This family consists only of glucitol-specific transporters, and occur both in Gram-negative and Gram-positive bacteria. The system in Escherichia coli consists of a IIA protein, and a IIBC protein. This family is specific for the IIA component.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2F9H_A.
Probab=16.09 E-value=93 Score=23.60 Aligned_cols=29 Identities=38% Similarity=0.664 Sum_probs=0.0
Q ss_pred cccccccceEEEEeeccccCccccccCCCccchhhhccccC
Q psy17068 3 AHYMLNEKFIIFLDLTHQNGEGSWTSNNVPDTLDQYLSCHT 43 (157)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ht 43 (157)
|.-++.+++||+++ .+.|++|..|--.|.
T Consensus 16 a~~~~~~~mlIlF~------------~~Ap~~L~d~~vih~ 44 (117)
T PF03829_consen 16 AEDFLEENMLILFG------------ENAPDELADYCVIHT 44 (117)
T ss_dssp T--TT-S-EEEEE-------------TTS-HHHHTTCEEEE
T ss_pred HHhhhhCCeEEEEC------------CCCChhHheEEEEEe
Done!