Query psy17068
Match_columns 157
No_of_seqs 17 out of 19
Neff 1.9
Searched_HMMs 29240
Date Fri Aug 16 21:02:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17068.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17068hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z73_A Rhodopsin; visual pigme 97.7 5.1E-06 1.7E-10 64.6 0.0 11 57-67 392-402 (448)
2 2z73_A Rhodopsin; visual pigme 97.5 1.2E-05 4.2E-10 62.5 0.0 11 64-74 392-402 (448)
3 2w3y_A Virulence factor, EVF; 9.5 30 0.001 29.6 -2.0 31 6-36 1-34 (283)
4 4gwg_A 6-phosphogluconate dehy 8.7 55 0.0019 28.2 -0.8 16 13-28 254-269 (484)
5 1j8r_A PAPG adhesin, pyeloneph 8.1 1.6E+02 0.0053 24.0 1.7 28 3-33 68-95 (196)
6 4a8j_B Elongator complex prote 8.1 82 0.0028 26.5 0.1 24 12-44 55-78 (270)
7 2b3g_B Cellular tumor antigen 7.9 60 0.0021 19.3 -0.6 12 31-42 14-25 (28)
8 2f9h_A PTS system, IIA compone 7.2 2.3E+02 0.0078 20.9 2.1 28 7-46 22-49 (129)
9 3ly7_A Transcriptional activat 6.6 2.6E+02 0.009 23.6 2.5 27 2-29 48-74 (372)
10 2l81_A Enhancer of filamentati 6.6 1.1E+02 0.0036 24.3 0.0 12 30-41 136-147 (176)
No 1
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=97.70 E-value=5.1e-06 Score=64.62 Aligned_cols=11 Identities=36% Similarity=0.739 Sum_probs=0.0
Q ss_pred CCCCCCCCCCC
Q psy17068 57 GYRNQIRGYRD 67 (157)
Q Consensus 57 GYp~~~qGYP~ 67 (157)
|||++.+|||+
T Consensus 392 ~~~~~~~~~p~ 402 (448)
T 2z73_A 392 GYAPPPQGYPP 402 (448)
T ss_dssp -----------
T ss_pred CCCCCcCCCCC
Confidence 44444445544
No 2
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=97.53 E-value=1.2e-05 Score=62.50 Aligned_cols=11 Identities=36% Similarity=0.794 Sum_probs=0.0
Q ss_pred CCCCCCCCCCC
Q psy17068 64 GYRDQNHGYRE 74 (157)
Q Consensus 64 GYP~q~qGYP~ 74 (157)
|||++.+|||+
T Consensus 392 ~~~~~~~~~p~ 402 (448)
T 2z73_A 392 GYAPPPQGYPP 402 (448)
T ss_dssp -----------
T ss_pred CCCCCcCCCCC
Confidence 44444455544
No 3
>2w3y_A Virulence factor, EVF; drosophila pathogen, erwinia carotovora, S-palmitoylated protein, lipid-binding protein; HET: PLM; 2.00A {Pectobacterium carotovorum subsp}
Probab=9.51 E-value=30 Score=29.57 Aligned_cols=31 Identities=48% Similarity=0.493 Sum_probs=17.2
Q ss_pred ccccceEEEEeecccc---CccccccCCCccchh
Q psy17068 6 MLNEKFIIFLDLTHQN---GEGSWTSNNVPDTLD 36 (157)
Q Consensus 6 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 36 (157)
|||||-|-=+||-.|| .||...||.|-|+.-
T Consensus 1 ~~~~~~~~~~~~~~~~i~g~~~~~as~e~~~~~~ 34 (283)
T 2w3y_A 1 MLNEKAIQDVDLYFQNIHGPEGRLASNETFDIVP 34 (283)
T ss_dssp -------CHHHHHHHHHHC---CCSTTTSBCCCC
T ss_pred CcchhhhhhHHHHHHhccCcceeecccccccccC
Confidence 8999999999998886 578899998877753
No 4
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=8.68 E-value=55 Score=28.23 Aligned_cols=16 Identities=38% Similarity=0.688 Sum_probs=14.1
Q ss_pred EEEeeccccCcccccc
Q psy17068 13 IFLDLTHQNGEGSWTS 28 (157)
Q Consensus 13 ~~~~~~~~~~~~~~~~ 28 (157)
.++|-.+|.|||.||.
T Consensus 254 ~i~d~~~~kgtG~wt~ 269 (484)
T 4gwg_A 254 KIRDSAGQKGTGKWTA 269 (484)
T ss_dssp GSCCCCCSSCTTHHHH
T ss_pred HHhccccCcchHHHHH
Confidence 4688899999999996
No 5
>1j8r_A PAPG adhesin, pyelonephritic adhesin; PAG adhesin, GBO4, structural genomics, PSI, protein structure initiative; HET: NGA GLA GAL BGC; 1.80A {Escherichia coli} SCOP: b.2.3.3 PDB: 1j8s_A
Probab=8.13 E-value=1.6e+02 Score=24.02 Aligned_cols=28 Identities=25% Similarity=0.676 Sum_probs=21.8
Q ss_pred cccccccceEEEEeeccccCccccccCCCcc
Q psy17068 3 AHYMLNEKFIIFLDLTHQNGEGSWTSNNVPD 33 (157)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (157)
-|-|-+|.|-||||+-. .|||.-.|--|
T Consensus 68 k~v~t~~gy~ifldv~s---k~~ws~en~~D 95 (196)
T 1j8r_A 68 KKVMTQNGYPLFIEVHN---KGSWSEENTGD 95 (196)
T ss_dssp SEEECTTSCEEEEEEEE---CTTCEEECTTC
T ss_pred ceeeecCCceEEEEEec---ccccccccCCC
Confidence 37788999999999954 57888766555
No 6
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=8.11 E-value=82 Score=26.55 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=19.7
Q ss_pred EEEEeeccccCccccccCCCccchhhhccccCC
Q psy17068 12 IIFLDLTHQNGEGSWTSNNVPDTLDQYLSCHTD 44 (157)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ht~ 44 (157)
|||| ||..-+-|+..|.|+.|...
T Consensus 55 IIyv---------SFETl~kP~~ad~FI~a~~k 78 (270)
T 4a8j_B 55 IVYI---------SFETVNKPSYCTQFIDATQM 78 (270)
T ss_dssp EEEE---------ESSCCSCCTTCSEEEETTSS
T ss_pred EEEE---------EeecccCCCCCCeeeEcCCC
Confidence 7777 57777889999999999654
No 7
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=7.87 E-value=60 Score=19.31 Aligned_cols=12 Identities=25% Similarity=0.681 Sum_probs=9.0
Q ss_pred Cccchhhhcccc
Q psy17068 31 VPDTLDQYLSCH 42 (157)
Q Consensus 31 ~~~~~~~~~~~h 42 (157)
.||.+||+|+-.
T Consensus 14 spddi~qw~s~d 25 (28)
T 2b3g_B 14 SPDDIEQWFTED 25 (28)
T ss_dssp CHHHHHHHHHC-
T ss_pred ChHHHHHHhhcC
Confidence 488999999753
No 8
>2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomic protein structure initiative; 1.57A {Enterococcus faecalis} SCOP: b.161.1.1
Probab=7.16 E-value=2.3e+02 Score=20.93 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=21.7
Q ss_pred cccceEEEEeeccccCccccccCCCccchhhhccccCCCC
Q psy17068 7 LNEKFIIFLDLTHQNGEGSWTSNNVPDTLDQYLSCHTDRD 46 (157)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ht~~~ 46 (157)
+.|++||+++ .+.|++|..|--.|...+
T Consensus 22 ~~e~mlIlFg------------e~AP~~L~d~cvih~~~~ 49 (129)
T 2f9h_A 22 DSEKMIILFG------------ETATDTLKQHAVIQSFPE 49 (129)
T ss_dssp TTSCEEEEEC------------TTCCHHHHTTSEEEECTT
T ss_pred cCCCEEEEeC------------CCCChHHheEEEEEEcCC
Confidence 7889988875 468999999877776543
No 9
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=6.63 E-value=2.6e+02 Score=23.62 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=22.4
Q ss_pred ccccccccceEEEEeeccccCccccccC
Q psy17068 2 SAHYMLNEKFIIFLDLTHQNGEGSWTSN 29 (157)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (157)
+.|+||-+--||.|-+.- ++...|+|-
T Consensus 48 ~~~~~~~~P~~ivlpF~n-~~~~~~~~~ 74 (372)
T 3ly7_A 48 SKSRILLNPRDIDINMVN-KSCNSWSSP 74 (372)
T ss_dssp --CCCCCEEEEEEEEEEC-SCTTSSCCT
T ss_pred ccceeecCCeEEEEEccC-CCCCccccc
Confidence 468999999999999988 899999983
No 10
>2l81_A Enhancer of filamentation 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, cell adhesion; NMR {Homo sapiens}
Probab=6.57 E-value=1.1e+02 Score=24.30 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=0.0
Q ss_pred CCccchhhhccc
Q psy17068 30 NVPDTLDQYLSC 41 (157)
Q Consensus 30 ~~~~~~~~~~~~ 41 (157)
+.||.||+|+.|
T Consensus 136 ~~~DdLDrfVmv 147 (176)
T 2l81_A 136 NKCDDLDRFVMV 147 (176)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCcchHHHHHHh
Done!