RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17068
(157 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.071
Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 8/97 (8%)
Query: 36 DQYLSCHTDRDQNRGYHNQNRGYRNQIRGYRDQNHGYREQNRGYREQNRGYRDHNRGYRE 95
YL + H + N + + D + Y + G+ H +
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTF-DSDDLIPPYLDQYFYSHIGH--HLKNIEH 486
Query: 96 QKRGYREQNRGYRD----QNADIAIKTADTANKSAVN 128
+R + D + TA A+ S +N
Sbjct: 487 PER-MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Score = 28.7 bits (63), Expect = 0.87
Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 31/113 (27%)
Query: 5 YMLNEKFIIFLDLTHQNGEGSWTSNN-VPDTLDQYLSCHTDRDQNRGYHNQNRGYRNQIR 63
Y L+ + H N ++ S++ +P LDQY H G+H +N + ++
Sbjct: 443 YALHRSIV-----DHYNIPKTFDSDDLIPPYLDQYFYSHI------GHHLKNIEHPERMT 491
Query: 64 GYRD------------QNHGYREQNRGYR----EQNRGYRDH---NRGYREQK 97
+R ++ G +Q + Y+ + N E+
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 0.83
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 66 RDQNHGYREQNRGYREQNRGYRDH-NRGYREQKRGYREQNRG-----YRDQNADI 114
D + + +RE+ + + N+ EQ + NR Y+ +ADI
Sbjct: 101 LDAAS--KVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153
>1z23_A CRK-associated substrate; four-helix bundle, cell adhesion; NMR
{Rattus norvegicus}
Length = 163
Score = 27.6 bits (61), Expect = 1.2
Identities = 5/35 (14%), Positives = 12/35 (34%)
Query: 7 LNEKFIIFLDLTHQNGEGSWTSNNVPDTLDQYLSC 41
+ + + + G D LD+ ++C
Sbjct: 101 MEDVYQTLVVHGQVLDSGRGGPGFTLDDLDRLVAC 135
>1xoc_A Oligopeptide-binding protein APPA; oligopeptide, APPA, transport,
transport protein; 1.55A {Bacillus subtilis} SCOP:
c.94.1.1
Length = 520
Score = 26.5 bits (59), Expect = 4.3
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 24 GSWTSNNVPDTLDQYLSCHTDRDQNR-GYHN 53
W+ + PD D + S + N Y N
Sbjct: 417 MGWSLSTFPDQYDIFHSSQIKKGLNYVWYKN 447
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 5.6
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 16 DLTHQNGEGSWTSNNVPDTLDQYLSCHTDRDQNRGY 51
LTH+N +G+ V TLD + D + G+
Sbjct: 514 VLTHRNKDGTGVRVIVAGTLD------INPDDDYGF 543
>1td9_A Phosphate acetyltransferase; structural genomics, BSGC structure
funded by NIH, protein structure initiative, PSI; 2.75A
{Bacillus subtilis} SCOP: c.77.1.5 PDB: 1xco_A
Length = 329
Score = 26.0 bits (58), Expect = 6.7
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 109 DQNADIAIKTADTA 122
A+IAI++A+TA
Sbjct: 182 QDLAEIAIESANTA 195
>4e4r_A Phosphate acetyltransferase; structural genomics, EUTD, center for
structural genomics of infectious diseases, csgid; HET:
TRS; 1.44A {Staphylococcus aureus subsp}
Length = 331
Score = 25.6 bits (57), Expect = 7.4
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 109 DQNADIAIKTADTA 122
A+IA+++A +A
Sbjct: 179 QGLAEIAVESAKSA 192
>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like
nucleotide-binding fold, structural genomics, BSGC
structure funded by NIH; 2.70A {Streptococcus pyogenes}
SCOP: c.77.1.5
Length = 337
Score = 25.6 bits (57), Expect = 7.5
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 109 DQNADIAIKTADTA 122
+ A+IA+ TA+TA
Sbjct: 186 QELAEIAVNTAETA 199
>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound
PER monomer, acyltransferase; HET: COA; 2.15A
{Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A*
2af3_C*
Length = 333
Score = 25.6 bits (57), Expect = 7.8
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 109 DQNADIAIKTADTA 122
+ A+IA+ +A T
Sbjct: 181 EDVANIAVISAKTF 194
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.30A {Geobacter metallireducens}
Length = 358
Score = 25.8 bits (57), Expect = 8.0
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 14 FLDLTHQNGEGSWTSNN 30
F +GEG WT
Sbjct: 296 FQGRVSDSGEGRWTVAA 312
>1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structura
genomics, JCSG, protein structure initiative, PSI, joint
CE structural genomics; 2.32A {Escherichia coli} SCOP:
c.77.1.5
Length = 355
Score = 25.6 bits (57), Expect = 8.0
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 109 DQNADIAIKTADTA 122
Q ADIA+ +A+T
Sbjct: 188 AQLADIALASAETW 201
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.129 0.380
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,246,384
Number of extensions: 117496
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 13
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.1 bits)