RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17068
         (157 letters)



>d1ryoa_ c.94.1.2 (A:) Transferrin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 324

 Score = 25.4 bits (55), Expect = 4.0
 Identities = 15/115 (13%), Positives = 32/115 (27%), Gaps = 16/115 (13%)

Query: 40  SCHTDRDQNRGYH-----------NQNRGYRNQIRGYRDQNHGYREQNRGYREQNRGYRD 88
           SCHT   ++ G++              +     +  +   +         + +  +    
Sbjct: 114 SCHTGLGRSAGWNIPIGLLYCDLPEPRKPLEKAVANFFSGSCAPCADGTDFPQLCQLCPG 173

Query: 89  HNRGYREQKRGYREQNRGYRDQNADIAIKTADTANKSAVNANNIKENSHENLPLL 143
                  Q  GY    +  +D   D+A     T     +  N   +   +   LL
Sbjct: 174 CGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHST-----IFENLANKADRDQYELL 223


>d1kfsa2 e.8.1.1 (A:519-928) DNA polymerase I (Klenow fragment)
           {Escherichia coli [TaxId: 562]}
          Length = 410

 Score = 24.4 bits (52), Expect = 8.9
 Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 2/59 (3%)

Query: 62  IRGYRDQNHGYREQNRGYREQNR--GYRDHNRGYREQKRGYREQNRGYRDQNADIAIKT 118
           +  Y ++  G  E     R Q +  GY +   G R      +  N   R      AI  
Sbjct: 270 MDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINA 328


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.129    0.380 

Gapped
Lambda     K      H
   0.267   0.0536    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 550,351
Number of extensions: 23232
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 3
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.1 bits)