Query psy17073
Match_columns 219
No_of_seqs 155 out of 1375
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 21:11:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17073.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17073hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0361|consensus 100.0 2.1E-54 4.7E-59 377.6 19.7 216 1-216 90-473 (543)
2 KOG0363|consensus 100.0 4.4E-52 9.4E-57 361.3 22.8 215 1-216 90-469 (527)
3 cd03336 TCP1_beta TCP-1 (CTT o 100.0 1.7E-51 3.8E-56 383.8 26.7 215 1-216 85-464 (517)
4 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 8.7E-51 1.9E-55 376.4 26.8 211 1-215 82-432 (484)
5 cd03337 TCP1_gamma TCP-1 (CTT 100.0 9.3E-51 2E-55 375.9 26.6 210 1-214 86-428 (480)
6 PTZ00212 T-complex protein 1 s 100.0 1.1E-50 2.4E-55 379.5 26.8 214 1-215 97-475 (533)
7 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1.4E-50 3E-55 378.5 26.6 210 1-214 78-466 (527)
8 TIGR02344 chap_CCT_gamma T-com 100.0 2.4E-50 5.3E-55 376.7 27.0 211 1-215 86-470 (525)
9 cd03340 TCP1_eta TCP-1 (CTT or 100.0 2.2E-50 4.8E-55 376.8 26.6 215 1-215 86-468 (522)
10 TIGR02347 chap_CCT_zeta T-comp 100.0 2.6E-50 5.5E-55 376.7 26.8 211 1-215 86-475 (531)
11 KOG0358|consensus 100.0 1.8E-51 3.9E-56 358.8 17.5 212 1-216 96-484 (534)
12 TIGR02341 chap_CCT_beta T-comp 100.0 3.2E-50 6.9E-55 375.3 27.0 214 1-215 86-464 (519)
13 TIGR02342 chap_CCT_delta T-com 100.0 3.5E-50 7.6E-55 375.0 26.6 212 1-216 79-467 (517)
14 TIGR02339 thermosome_arch ther 100.0 3.3E-50 7.2E-55 375.4 26.2 211 1-215 86-469 (519)
15 TIGR02345 chap_CCT_eta T-compl 100.0 4E-50 8.6E-55 375.1 26.3 214 1-215 87-469 (522)
16 cd03338 TCP1_delta TCP-1 (CTT 100.0 6.6E-50 1.4E-54 373.1 26.7 211 1-215 78-465 (515)
17 TIGR02340 chap_CCT_alpha T-com 100.0 1.1E-49 2.3E-54 373.2 26.2 211 1-215 82-471 (536)
18 cd03339 TCP1_epsilon TCP-1 (CT 100.0 1.4E-49 3.1E-54 371.7 26.8 212 1-214 93-475 (526)
19 TIGR02343 chap_CCT_epsi T-comp 100.0 1.5E-49 3.2E-54 371.8 26.7 212 1-214 97-479 (532)
20 cd03343 cpn60 cpn60 chaperonin 100.0 2.2E-49 4.8E-54 369.6 26.8 211 1-215 85-466 (517)
21 TIGR02346 chap_CCT_theta T-com 100.0 4.4E-49 9.5E-54 368.6 26.8 211 1-215 88-467 (531)
22 cd00309 chaperonin_type_I_II c 100.0 5.3E-49 1.2E-53 362.7 26.4 211 1-215 78-415 (464)
23 cd03341 TCP1_theta TCP-1 (CTT 100.0 4.4E-48 9.5E-53 357.4 26.7 211 1-215 78-419 (472)
24 PRK12849 groEL chaperonin GroE 100.0 1.1E-44 2.4E-49 339.2 25.1 198 1-212 84-473 (542)
25 COG0459 GroL Chaperonin GroEL 100.0 3.6E-45 7.8E-50 340.0 21.3 205 1-212 81-461 (524)
26 cd03344 GroEL GroEL_like type 100.0 1.9E-44 4E-49 336.4 24.8 198 1-212 82-471 (520)
27 KOG0364|consensus 100.0 8.9E-46 1.9E-50 327.2 14.9 211 1-215 89-470 (527)
28 PRK00013 groEL chaperonin GroE 100.0 2.5E-44 5.4E-49 336.8 24.6 197 1-211 84-472 (542)
29 PRK12850 groEL chaperonin GroE 100.0 4.2E-44 9.2E-49 335.5 24.7 198 1-212 85-474 (544)
30 PTZ00114 Heat shock protein 60 100.0 6.3E-44 1.4E-48 335.1 25.7 196 1-209 96-486 (555)
31 PRK12852 groEL chaperonin GroE 100.0 6.6E-44 1.4E-48 334.5 25.0 198 1-212 85-474 (545)
32 PRK12851 groEL chaperonin GroE 100.0 9.1E-44 2E-48 333.0 24.6 198 1-212 85-474 (541)
33 TIGR02348 GroEL chaperonin Gro 100.0 3.1E-43 6.7E-48 328.6 24.7 196 1-210 83-470 (524)
34 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 7.9E-43 1.7E-47 321.7 26.5 210 1-215 59-434 (485)
35 CHL00093 groEL chaperonin GroE 100.0 4E-43 8.7E-48 328.1 23.7 197 1-210 84-473 (529)
36 PRK14104 chaperonin GroEL; Pro 100.0 5.6E-43 1.2E-47 327.9 24.1 197 1-211 85-473 (546)
37 PLN03167 Chaperonin-60 beta su 100.0 5.6E-41 1.2E-45 316.8 20.7 197 1-211 140-529 (600)
38 KOG0360|consensus 100.0 3E-42 6.5E-47 307.1 11.2 208 1-213 89-475 (545)
39 KOG0357|consensus 100.0 3.7E-41 8E-46 290.0 14.7 212 1-218 89-347 (400)
40 KOG0359|consensus 100.0 2E-40 4.3E-45 293.0 17.7 207 1-214 87-465 (520)
41 KOG0362|consensus 100.0 8.5E-37 1.8E-41 273.6 19.0 209 1-215 96-470 (537)
42 KOG0356|consensus 100.0 8.3E-27 1.8E-31 211.9 19.2 196 1-209 98-486 (550)
43 cd03333 chaperonin_like chaper 99.4 1.6E-12 3.4E-17 108.1 9.6 45 101-145 165-209 (209)
44 cd03334 Fab1_TCP TCP-1 like do 98.8 7.1E-09 1.5E-13 89.4 6.1 104 41-149 142-257 (261)
45 KOG0230|consensus 80.0 2 4.3E-05 45.2 3.8 51 101-151 522-572 (1598)
46 PF07278 DUF1441: Protein of u 55.7 20 0.00043 28.6 4.0 28 176-203 101-128 (152)
47 KOG1593|consensus 49.6 30 0.00064 30.3 4.4 60 129-199 105-166 (349)
48 COG3962 Acetolactate synthase 47.9 14 0.00031 34.8 2.4 39 129-168 216-254 (617)
49 KOG2663|consensus 40.3 31 0.00067 29.9 3.1 29 111-140 119-147 (309)
50 PF12554 MOZART1: Mitotic-spin 39.6 47 0.001 21.2 3.1 20 15-34 23-42 (48)
51 PRK04027 30S ribosomal protein 37.9 88 0.0019 25.9 5.3 32 171-206 74-105 (195)
52 PF04864 Alliinase_C: Allinase 37.1 29 0.00062 31.4 2.6 39 122-160 42-81 (363)
53 cd07639 BAR_ACAP1 The Bin/Amph 36.9 2.5E+02 0.0053 23.4 8.1 83 122-207 8-95 (200)
54 PTZ00091 40S ribosomal protein 34.8 67 0.0014 26.6 4.2 32 171-206 72-103 (193)
55 COG2054 Uncharacterized archae 34.1 65 0.0014 26.7 3.9 11 146-156 29-39 (212)
56 PF08708 PriCT_1: Primase C te 31.4 1.6E+02 0.0034 19.5 7.2 53 13-75 14-67 (71)
57 TIGR01028 S7_S5_E_A ribosomal 31.0 85 0.0019 25.8 4.2 32 171-206 65-96 (186)
58 PF02796 HTH_7: Helix-turn-hel 30.7 63 0.0014 19.7 2.7 33 16-48 11-43 (45)
59 COG4953 PbpC Membrane carboxyp 30.6 71 0.0015 31.5 4.2 47 136-182 94-140 (733)
60 PF00725 3HCDH: 3-hydroxyacyl- 30.3 1.4E+02 0.0029 21.0 4.8 30 11-40 7-37 (97)
61 COG4577 CcmK Carbon dioxide co 29.1 2.2E+02 0.0047 22.7 6.0 46 90-139 19-64 (150)
62 TIGR03319 YmdA_YtgF conserved 28.3 68 0.0015 30.5 3.7 48 3-50 241-296 (514)
63 PF07141 Phage_term_sma: Putat 27.2 2.2E+02 0.0047 22.3 5.6 34 12-45 17-50 (174)
64 COG1327 Predicted transcriptio 26.7 2.1E+02 0.0045 22.8 5.5 67 26-104 60-127 (156)
65 PF04719 TAFII28: hTAFII28-lik 26.4 1.3E+02 0.0029 21.7 4.1 29 10-38 56-89 (90)
66 COG3797 Uncharacterized protei 25.5 30 0.00064 28.2 0.6 52 114-165 10-62 (178)
67 COG0049 RpsG Ribosomal protein 25.2 1.3E+02 0.0029 23.8 4.2 32 171-206 32-63 (148)
68 PF07685 GATase_3: CobB/CobQ-l 23.0 2.6E+02 0.0056 21.7 5.6 52 113-164 9-60 (158)
69 COG5016 Pyruvate/oxaloacetate 22.9 1E+02 0.0023 28.6 3.6 41 149-201 299-339 (472)
70 cd07637 BAR_ACAP3 The Bin/Amph 22.8 3.5E+02 0.0076 22.3 6.5 64 122-188 8-73 (200)
71 smart00574 POX domain associat 22.7 1.7E+02 0.0036 23.0 4.2 43 123-165 84-126 (140)
72 PF09999 DUF2240: Uncharacteri 21.9 1.5E+02 0.0033 23.3 4.0 31 182-212 84-114 (144)
73 PHA02591 hypothetical protein; 21.7 1.5E+02 0.0032 21.0 3.4 35 15-49 48-82 (83)
74 KOG2391|consensus 20.4 1.8E+02 0.004 26.3 4.6 44 128-182 311-354 (365)
75 cd01979 Pchlide_reductase_N Pc 20.3 2.5E+02 0.0054 25.5 5.6 47 120-166 251-298 (396)
76 PF00196 GerE: Bacterial regul 20.2 2.4E+02 0.0052 17.7 4.9 40 19-58 11-50 (58)
77 PF06760 DUF1221: Protein of u 20.0 5.2E+02 0.011 21.6 7.2 70 120-205 44-120 (217)
No 1
>KOG0361|consensus
Probab=100.00 E-value=2.1e-54 Score=377.60 Aligned_cols=216 Identities=73% Similarity=1.092 Sum_probs=208.1
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
|||||||||+||+|+|+++..+++.|+||..|+++|+.|...+++.+++++++++..+..+.++.|.++|.|+++||++.
T Consensus 90 VGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~ 169 (543)
T KOG0361|consen 90 VGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKLIR 169 (543)
T ss_pred ccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhhhh
Confidence 79999999999999999999999999999999999999999999999999999886666677899999999999999999
Q ss_pred hhhchhHHHHHHHHHhhccc------------------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDDL------------------------------------------------------------ 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~~------------------------------------------------------------ 100 (219)
++.++|++|++||+..+++.
T Consensus 170 ~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~LnvELElKaE 249 (543)
T KOG0361|consen 170 QEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNVELELKAE 249 (543)
T ss_pred hhHHHHHHHHHHHHHhhccccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEEEEeeeeeeccc
Confidence 99999999999999987520
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 250 kdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~Rv~~acGGs 329 (543)
T KOG0361|consen 250 KDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLNRVMQACGGS 329 (543)
T ss_pred ccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHHHHHHHHhcCcc
Confidence
Q ss_pred ----------------------------eeEEecccCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Q psy17073 101 ----------------------------FNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGG 152 (219)
Q Consensus 101 ----------------------------~~~~~~~~~~~~~tI~irg~t~~~l~E~er~i~dal~v~~~~~~~~~~v~GG 152 (219)
|.||+||+..++||+++||+-++.++|.||++|||++++|.++++..+|+||
T Consensus 330 i~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~vVaGG 409 (543)
T KOG0361|consen 330 IQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGG 409 (543)
T ss_pred hhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCC
Confidence 9999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC
Q psy17073 153 GAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGRL 216 (219)
Q Consensus 153 G~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~ 216 (219)
|++||+||+.|++|+.++.+++|+.+.+|++|||.|||+|++|+|+|..+++.+||.+|++|.+
T Consensus 410 GaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~ 473 (543)
T KOG0361|consen 410 GAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEK 473 (543)
T ss_pred ceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999865
No 2
>KOG0363|consensus
Probab=100.00 E-value=4.4e-52 Score=361.26 Aligned_cols=215 Identities=41% Similarity=0.681 Sum_probs=204.3
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
||||||||+||+++||++|++|+.+.+||++|+.||++|...+++.|.+.+++.. ++...++++|+++|+|+|+||+.+
T Consensus 90 vGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns-~~~~kfr~DLl~iarTTL~SKiLs 168 (527)
T KOG0363|consen 90 VGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNS-SDKEKFREDLLKIARTTLSSKILS 168 (527)
T ss_pred cCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhcc-CchHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999988754 456678999999999999999999
Q ss_pred hhhchhHHHHHHHHHhhcc---c---------------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD---L--------------------------------------------------------- 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~---~--------------------------------------------------------- 100 (219)
++.++|++++++|+.+++. +
T Consensus 169 q~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv~qpkriena~iLIANT~mDtDKvKvfG 248 (527)
T KOG0363|consen 169 QDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIGVNQPKRIENAKILIANTPMDTDKVKVFG 248 (527)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCccccccccccceeccccCCCCcccccccceEEecCCCcccceeeec
Confidence 9999999999999998731 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 249 arvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiERLalvtGGeI~S 328 (527)
T KOG0363|consen 249 ARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIERLALVTGGEIVS 328 (527)
T ss_pred ceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhHHHHhhcccceeee
Confidence
Q ss_pred -------------------------eeEEecccCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccccccHH
Q psy17073 101 -------------------------FNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAI 155 (219)
Q Consensus 101 -------------------------~~~~~~~~~~~~~tI~irg~t~~~l~E~er~i~dal~v~~~~~~~~~~v~GGG~~ 155 (219)
+..|.||+.+.+|||++||+|++++||.||++||||||+....++.|+++||||.
T Consensus 329 TFd~p~~~klG~C~~IeeimiGed~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~s 408 (527)
T KOG0363|consen 329 TFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCS 408 (527)
T ss_pred ccCCcchhccccchhhHHHhcCccceeeecccccccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcH
Confidence 6778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC
Q psy17073 156 EMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGRL 216 (219)
Q Consensus 156 e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~ 216 (219)
||.++..+.+++...++++..++++|++||..+|.+||.|+|+|+.+++++||+.|++|+.
T Consensus 409 Em~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~ 469 (527)
T KOG0363|consen 409 EMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRT 469 (527)
T ss_pred HHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCc
Confidence 9999999999999999999999999999999999999999999999999999999999875
No 3
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.7e-51 Score=383.78 Aligned_cols=215 Identities=40% Similarity=0.657 Sum_probs=200.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+||||||+||||++||+++++|+++|+||..|++||+.|.+.++++|++++++++. +.++.++.|+++|+|+++||+.+
T Consensus 85 ~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~-~~~~~~~~l~~ia~t~lssk~~~ 163 (517)
T cd03336 85 VGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSS-DEEAFREDLLNIARTTLSSKILT 163 (517)
T ss_pred hCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCccc-ccchhHHHHHHHHHhhccccccc
Confidence 69999999999999999999999999999999999999999999999999998742 22223678999999999999999
Q ss_pred hhhchhHHHHHHHHHhhcc------c------------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD------L------------------------------------------------------ 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~------~------------------------------------------------------ 100 (219)
.++++|++++++|+.++++ +
T Consensus 164 ~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~~~~~~~~n~kIli~~~~le~~~~~~~~ 243 (517)
T cd03336 164 QDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGVNQPKRIENAKILIANTPMDTDKIKIFG 243 (517)
T ss_pred hhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCccceEEEeeEEEecccCCCCCCeeccccEEEEecCCCcccccccC
Confidence 9999999999999988731 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 244 ~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~tGa~ii~ 323 (517)
T cd03336 244 AKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALVTGGEIAS 323 (517)
T ss_pred ceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEec
Confidence
Q ss_pred -------------------------eeEEecccCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccccccHH
Q psy17073 101 -------------------------FNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAI 155 (219)
Q Consensus 101 -------------------------~~~~~~~~~~~~~tI~irg~t~~~l~E~er~i~dal~v~~~~~~~~~~v~GGG~~ 155 (219)
|++|++|+++++|||+|||+|+.+++|.||+++||++++++++++|++|||||++
T Consensus 324 ~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~ 403 (517)
T cd03336 324 TFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCS 403 (517)
T ss_pred ccCCCCcccccccceEEEEEECCeEEEEEEccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHH
Confidence 7888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC
Q psy17073 156 EMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGRL 216 (219)
Q Consensus 156 e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~ 216 (219)
|++++..|++++++.++++|+++++|++||+.||++|++|||+|+.+++++|++.|++|+.
T Consensus 404 e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~ 464 (517)
T cd03336 404 EMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNT 464 (517)
T ss_pred HHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999998999999999999999999999999999999999999999999987643
No 4
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8.7e-51 Score=376.40 Aligned_cols=211 Identities=36% Similarity=0.648 Sum_probs=199.4
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccC-CCchhhHHHHHHHHHHhhhhhcc
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQK-SDSGEYRGLLEKCAATALSSKLI 79 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~-~~~~~~~~~l~~va~tsl~sK~~ 79 (219)
+||||||++|||++||+++++++++|+||..|++||++|++.++++|++++.+++. .+ ++.+.++|+|+++||+.
T Consensus 82 ~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~----~~~l~~va~ts~~sk~~ 157 (484)
T cd03342 82 TGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTD----RELLLSVARTSLRTKLH 157 (484)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC----HHHHHHHHHHHhCcccc
Confidence 69999999999999999999999999999999999999999999999999988753 13 67899999999999999
Q ss_pred hhhhchhHHHHHHHHHhhcc-----------c------------------------------------------------
Q psy17073 80 HQQKGFFSKMVVDAVMSLDD-----------L------------------------------------------------ 100 (219)
Q Consensus 80 ~~~~~~i~~l~~~Av~~v~~-----------~------------------------------------------------ 100 (219)
+.+.+.|++++++|+..+++ +
T Consensus 158 ~~~~~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~~le~~~ 237 (484)
T cd03342 158 ADLADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYEK 237 (484)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCChhhceEEeeEEEecCCCCCCCCccccCceEEEEeCCCCCCc
Confidence 99999999999999987731 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 238 ~~~~~~~~~~lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~ 317 (484)
T cd03342 238 TEVNSGFFYSVVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLGEEK 317 (484)
T ss_pred cccCcEEEEEEEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCEEecccccCChhhCcccceEEEEEECCeE
Confidence
Q ss_pred eeEEecccCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccccccHHHHHHHHHHHHHhcccchHHHHHHHH
Q psy17073 101 FNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGA 180 (219)
Q Consensus 101 ~~~~~~~~~~~~~tI~irg~t~~~l~E~er~i~dal~v~~~~~~~~~~v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~ 180 (219)
|+||++|++++.|||+|||||+.+++|+||+++|||+++++++++|++|||||++|++++.+|+++++..++++|+++++
T Consensus 318 ~~~i~~~~~~~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~ 397 (484)
T cd03342 318 YTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAKLGVQA 397 (484)
T ss_pred EEEEECCCCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy17073 181 VAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGR 215 (219)
Q Consensus 181 ~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~ 215 (219)
|++||+.||++|++|||+|+.+++.+|++.|++|+
T Consensus 398 ~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~ 432 (484)
T cd03342 398 FADALLVIPKTLAENSGLDVQETLVKLQDEYAEGG 432 (484)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999998764
No 5
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=9.3e-51 Score=375.88 Aligned_cols=210 Identities=42% Similarity=0.726 Sum_probs=199.2
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+||||||+|||+++||+++.+|+++|+||..|++||++|.+.++++|++++++++..+ ++.+.++++|+++||+.+
T Consensus 86 ~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~----~~~l~~i~~t~l~sK~~~ 161 (480)
T cd03337 86 VGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVND----RAQMLKIIKSCIGTKFVS 161 (480)
T ss_pred hCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCC----HHHHHHHHHHHhccCcch
Confidence 6999999999999999999999999999999999999999999999999999886444 678999999999999999
Q ss_pred hhhchhHHHHHHHHHhhc----------c----c----------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLD----------D----L---------------------------------------------- 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~----------~----~---------------------------------------------- 100 (219)
.+.+.|++++++|+..++ | +
T Consensus 162 ~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll~~~L 241 (480)
T cd03337 162 RWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPL 241 (480)
T ss_pred hHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCCCCcEecCCCEEEEecCc
Confidence 999999999999997762 1 1
Q ss_pred -------------------------------------------------------------------------eeEEecc
Q psy17073 101 -------------------------------------------------------------------------FNVFSGC 107 (219)
Q Consensus 101 -------------------------------------------------------------------------~~~~~~~ 107 (219)
|+||++|
T Consensus 242 e~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~ 321 (480)
T cd03337 242 EYLVITEKGVSDLAQHYLVKAGITALRRVRKTDNNRIARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITEC 321 (480)
T ss_pred ceEEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcC
Confidence 5788899
Q ss_pred cCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q psy17073 108 KNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEV 187 (219)
Q Consensus 108 ~~~~~~tI~irg~t~~~l~E~er~i~dal~v~~~~~~~~~~v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ 187 (219)
++++.|||+|||||+.+++|+||+++||+++++++++++++|||||++||+++.+|++++++.++++|+++++|++||+.
T Consensus 322 ~~~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ 401 (480)
T cd03337 322 KDPKACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEV 401 (480)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence 98999999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy17073 188 IPRQLSDNAGFDATNILNKLRQKHAQG 214 (219)
Q Consensus 188 ip~~L~~NaG~d~~~~~~~l~~~h~~~ 214 (219)
||++|++|||+|+.+++.+|++.|++|
T Consensus 402 ip~~La~NaG~d~~~~l~~l~~~h~~~ 428 (480)
T cd03337 402 IPRTLAQNCGANVIRTLTELRAKHAQG 428 (480)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcc
Confidence 999999999999999999999999887
No 6
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=1.1e-50 Score=379.53 Aligned_cols=214 Identities=39% Similarity=0.709 Sum_probs=199.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+||||||+||||++||+++++|+++|+||..|++||++|++.++++|++++++++..+ ...++.|.++|+|+++||+.+
T Consensus 97 ~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~-~~~~~~l~~va~t~l~sk~~~ 175 (533)
T PTZ00212 97 VGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDE-EKFKEDLLNIARTTLSSKLLT 175 (533)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccc-hhhHHHHHHHHHHHhcccccc
Confidence 6999999999999999999999999999999999999999999999999999875322 122578999999999999999
Q ss_pred hhhchhHHHHHHHHHhhcc------c------------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD------L------------------------------------------------------ 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~------~------------------------------------------------------ 100 (219)
.+.+.|++++++|+..+.+ +
T Consensus 176 ~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~~~~~~i~n~kIll~~~~Le~~k~~~~~ 255 (533)
T PTZ00212 176 VEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGVGQPKRLENCKILVANTPMDTDKIKIYG 255 (533)
T ss_pred hhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCccccEEEEeEEEecccCCCCCccccCCcEEEEeCCCCCCcccccC
Confidence 9999999999999987721 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 256 ~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v~~~~l~rIa~~tGa~iis 335 (533)
T PTZ00212 256 AKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHADFDGMERLAAALGAEIVS 335 (533)
T ss_pred ceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEEee
Confidence
Q ss_pred -------------------------eeEEecccCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccccccHH
Q psy17073 101 -------------------------FNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAI 155 (219)
Q Consensus 101 -------------------------~~~~~~~~~~~~~tI~irg~t~~~l~E~er~i~dal~v~~~~~~~~~~v~GGG~~ 155 (219)
|++|++|+.+++|||+|||+|+.+++|+||+++|||+++++++++|++|||||++
T Consensus 336 ~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~ 415 (533)
T PTZ00212 336 TFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAKGEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCS 415 (533)
T ss_pred cCCCCCHHHccCCceEEEEEECCeEEEEEEccCCCCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHH
Confidence 7888999989999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy17073 156 EMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGR 215 (219)
Q Consensus 156 e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~ 215 (219)
|++++..|++++++.++++|+++++|++||+.||++|++|||+|+.+++++|++.|++++
T Consensus 416 e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~ 475 (533)
T PTZ00212 416 EMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGN 475 (533)
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Confidence 999999999999899999999999999999999999999999999999999999998764
No 7
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.4e-50 Score=378.49 Aligned_cols=210 Identities=40% Similarity=0.660 Sum_probs=198.3
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hcccccCCCchhhHHHHHHHHHHhhhhhcc
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDE-LAVKIQKSDSGEYRGLLEKCAATALSSKLI 79 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~-~s~~v~~~~~~~~~~~l~~va~tsl~sK~~ 79 (219)
+||||||+||||++||+++++|+++|+||..|++||++|.+.++++|++ ++++++..+ ++.+.++|+|+++||++
T Consensus 78 ~GDGTTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~----~~~l~~ia~tsl~sK~~ 153 (527)
T cd03335 78 VGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLG----KESLINVAKTSMSSKII 153 (527)
T ss_pred hCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccC----HHHHHHHHHHHhccccc
Confidence 6999999999999999999999999999999999999999999999996 888876434 67899999999999999
Q ss_pred hhhhchhHHHHHHHHHhhc---c-----c---------------------------------------------------
Q psy17073 80 HQQKGFFSKMVVDAVMSLD---D-----L--------------------------------------------------- 100 (219)
Q Consensus 80 ~~~~~~i~~l~~~Av~~v~---~-----~--------------------------------------------------- 100 (219)
+.+.++|++++++|+..++ . +
T Consensus 154 ~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~L 233 (527)
T cd03335 154 GADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNL 233 (527)
T ss_pred chhHHHHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccCCCCCcccccCCcEEEEeccC
Confidence 8888999999999998872 0 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 234 e~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~ 313 (527)
T cd03335 234 QKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAK 313 (527)
T ss_pred CCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHH
Confidence
Q ss_pred ---------------------------------------eeEEecccCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Q psy17073 101 ---------------------------------------FNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRR 141 (219)
Q Consensus 101 ---------------------------------------~~~~~~~~~~~~~tI~irg~t~~~l~E~er~i~dal~v~~~ 141 (219)
|++|++|+++++|||+|||+|+.+++|+||+++||++++++
T Consensus 314 ~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~ 393 (527)
T cd03335 314 ATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKR 393 (527)
T ss_pred HhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHH
Confidence 68888999999999999999999999999999999999999
Q ss_pred HHHcCcccccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy17073 142 TIRNHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQG 214 (219)
Q Consensus 142 ~~~~~~~v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~ 214 (219)
++++|++|||||++|++++..|+++++..++++|+++++|++||+.||++||+|||+|+.+++.+|++.|++|
T Consensus 394 ~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~ 466 (527)
T cd03335 394 TLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAA 466 (527)
T ss_pred HhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999989999999999999999999999999999999999999999999877
No 8
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.4e-50 Score=376.72 Aligned_cols=211 Identities=36% Similarity=0.666 Sum_probs=199.3
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+||||||+|||+++||+++.+|+++|+||..|++||+.|.+.++++|++++++++..+ ++.+.++|+|+++||+.+
T Consensus 86 ~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~----~~~l~~i~~t~l~sk~~~ 161 (525)
T TIGR02344 86 VGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVND----DAAMLKLIQSCIGTKFVS 161 (525)
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCC----HHHHHHHHHHhhccccch
Confidence 6999999999999999999999999999999999999999999999999999886544 577999999999999999
Q ss_pred hhhchhHHHHHHHHHhhc----------c----c----------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLD----------D----L---------------------------------------------- 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~----------~----~---------------------------------------------- 100 (219)
.+++.|++++++|++.++ | +
T Consensus 162 ~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~kIlll~~~L 241 (525)
T TIGR02344 162 RWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLLDCPL 241 (525)
T ss_pred hHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCCCccccCCCCEEEEeccc
Confidence 999999999999997662 0 1
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 242 e~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~LerIa~ 321 (525)
T TIGR02344 242 EYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIAR 321 (525)
T ss_pred ccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHHHHH
Confidence
Q ss_pred ----------------------------------eeEEecccCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy17073 101 ----------------------------------FNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNH 146 (219)
Q Consensus 101 ----------------------------------~~~~~~~~~~~~~tI~irg~t~~~l~E~er~i~dal~v~~~~~~~~ 146 (219)
|+||++|+++..|||+|||+|+++++|+||+++||+++++++++++
T Consensus 322 ~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~ 401 (525)
T TIGR02344 322 ACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARNVLLEP 401 (525)
T ss_pred HhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCCCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6888999989999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy17073 147 AVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGR 215 (219)
Q Consensus 147 ~~v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~ 215 (219)
++|||||++||+||..|++++.+.++++|+++++|++||+.||++||+|||+|+.+++.+|++.|++|+
T Consensus 402 ~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~ 470 (525)
T TIGR02344 402 KLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEG 470 (525)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC
Confidence 999999999999999999998899999999999999999999999999999999999999999998773
No 9
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.2e-50 Score=376.78 Aligned_cols=215 Identities=73% Similarity=1.120 Sum_probs=200.7
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+||||||+|||+++||+++.+|+++|+||..|++||+.|++.++++|++++++++..+.++.++.+.++|+|+++||+.+
T Consensus 86 ~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~ 165 (522)
T cd03340 86 VGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIA 165 (522)
T ss_pred hCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcch
Confidence 69999999999999999999999999999999999999999999999999998764322223577999999999999999
Q ss_pred hhhchhHHHHHHHHHhhcc------c------------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD------L------------------------------------------------------ 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~------~------------------------------------------------------ 100 (219)
.++++|++++++|+.++++ +
T Consensus 166 ~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~Le~~~~ 245 (522)
T cd03340 166 SEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVELELKAE 245 (522)
T ss_pred hHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeCCCCCCcc
Confidence 9999999999999988731 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 246 ~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~tGa~ 325 (522)
T cd03340 246 KDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVAQATGGS 325 (522)
T ss_pred ccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCE
Confidence
Q ss_pred ----------------------------eeEEecccCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Q psy17073 101 ----------------------------FNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGG 152 (219)
Q Consensus 101 ----------------------------~~~~~~~~~~~~~tI~irg~t~~~l~E~er~i~dal~v~~~~~~~~~~v~GG 152 (219)
|+||++|+.++.|||++||+|+.+++|+||+++||++++++++++|++||||
T Consensus 326 ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGG 405 (522)
T cd03340 326 IQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGG 405 (522)
T ss_pred EeeccccCCccccccceEEEEEEECCEEEEEEECCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECc
Confidence 7788999989999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy17073 153 GAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGR 215 (219)
Q Consensus 153 G~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~ 215 (219)
|++|++++.+|++++++.++++++++++|++||+.||++|++|||+||.+++.+|++.|++|+
T Consensus 406 G~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~ 468 (522)
T cd03340 406 GAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGG 468 (522)
T ss_pred CHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Confidence 999999999999998889999999999999999999999999999999999999999998774
No 10
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.6e-50 Score=376.72 Aligned_cols=211 Identities=35% Similarity=0.621 Sum_probs=198.2
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccccc-CCCchhhHHHHHHHHHHhhhhhcc
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQ-KSDSGEYRGLLEKCAATALSSKLI 79 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~-~~~~~~~~~~l~~va~tsl~sK~~ 79 (219)
+||||||+||||++||++|++|+++|+||..|++||+.|++.++++|+++++++. ..+ ++.+.++|+|+++||+.
T Consensus 86 ~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~----~~~l~~ia~tsl~sK~~ 161 (531)
T TIGR02347 86 TGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVD----RELLLNVARTSLRTKLP 161 (531)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC----HHHHHHHHHHHhccccc
Confidence 6999999999999999999999999999999999999999999999999997653 223 67899999999999999
Q ss_pred hhhhchhHHHHHHHHHhhcc----c-------------------------------------------------------
Q psy17073 80 HQQKGFFSKMVVDAVMSLDD----L------------------------------------------------------- 100 (219)
Q Consensus 80 ~~~~~~i~~l~~~Av~~v~~----~------------------------------------------------------- 100 (219)
+.++++|++++++|+.++++ +
T Consensus 162 ~~~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~~~~~n~~Ill~~~~le~~~ 241 (531)
T TIGR02347 162 IDLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEK 241 (531)
T ss_pred hhhHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCccccEEEeeEEEecCcCCCCCceeccCceEEEEeCCCCCCc
Confidence 99999999999999987721 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~rv~~~~ 321 (531)
T TIGR02347 242 TEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRRAKRRN 321 (531)
T ss_pred cccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEccCCHHH
Confidence
Q ss_pred ---------------------------------------eeEEecccCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Q psy17073 101 ---------------------------------------FNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRR 141 (219)
Q Consensus 101 ---------------------------------------~~~~~~~~~~~~~tI~irg~t~~~l~E~er~i~dal~v~~~ 141 (219)
|+||++|++++.|||+|||+|+.+++|+||+++||++++++
T Consensus 322 le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~ 401 (531)
T TIGR02347 322 MERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNPKSCTILIKGPNDHTIKQIKDAVRDGLRAVKN 401 (531)
T ss_pred HHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 78888998899999999999999999999999999999999
Q ss_pred HHHcCcccccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy17073 142 TIRNHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGR 215 (219)
Q Consensus 142 ~~~~~~~v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~ 215 (219)
++++|++|||||++|++++..|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|.+|+
T Consensus 402 ~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~ 475 (531)
T TIGR02347 402 AIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGG 475 (531)
T ss_pred HhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccC
Confidence 99999999999999999999999998889999999999999999999999999999999999999999998754
No 11
>KOG0358|consensus
Probab=100.00 E-value=1.8e-51 Score=358.77 Aligned_cols=212 Identities=40% Similarity=0.660 Sum_probs=200.7
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+||||||||||||+||+.+++|+++|+||+.|...|+.|....+++|++|+.|++-++ ++.|.+.|.|+|+||+.+
T Consensus 96 aGDGTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsd----re~Li~~atTsLnSKvvS 171 (534)
T KOG0358|consen 96 AGDGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSD----RESLIKSATTSLNSKVVS 171 (534)
T ss_pred ccCCceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCc----HHHHHHHHHhHhhHHHHH
Confidence 5999999999999999999999999999999999999999999999999999998766 888999999999999999
Q ss_pred hhhchhHHHHHHHHHhhcc-----------c-------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD-----------L------------------------------------------------- 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~-----------~------------------------------------------------- 100 (219)
.|..++++|.++|+.++.| +
T Consensus 172 q~s~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~~gptriekAkIglIQF~iS~P 251 (534)
T KOG0358|consen 172 QYSSLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKSAGPTRIEKAKIGLIQFQISPP 251 (534)
T ss_pred hhccccchHHHHHHHhccCcccccccchhhhhhHHhhCCccchhhhhcceEEeeecccCCCcchhhhceeeEEEEEecCC
Confidence 9999999999999998732 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 252 Ktdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefi 331 (534)
T KOG0358|consen 252 KTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFI 331 (534)
T ss_pred CCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHH
Confidence
Q ss_pred ------------------------------------eeEEecccC-CceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy17073 101 ------------------------------------FNVFSGCKN-ARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTI 143 (219)
Q Consensus 101 ------------------------------------~~~~~~~~~-~~~~tI~irg~t~~~l~E~er~i~dal~v~~~~~ 143 (219)
+..+.|+++ +.++||++||+++.+++|.||++||||||+|+.+
T Consensus 332 ck~l~c~Pia~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDALCVirCLv 411 (534)
T KOG0358|consen 332 CKTLGCKPIADIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLV 411 (534)
T ss_pred HhhcCCeecchhhhcChhhcCcchhhhhcccCCCccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhhHHHHhhh
Confidence 345566665 7899999999999999999999999999999999
Q ss_pred HcCcccccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC
Q psy17073 144 RNHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGRL 216 (219)
Q Consensus 144 ~~~~~v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~ 216 (219)
+.+.++||||+.||.++.+|.+++++..|.++|++++|++|||.||.+||+|+|++|+.++++||++|++|+.
T Consensus 412 k~r~li~GGGapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~ 484 (534)
T KOG0358|consen 412 KKRALIAGGGAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEK 484 (534)
T ss_pred hccceecCCCCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999865
No 12
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.2e-50 Score=375.35 Aligned_cols=214 Identities=39% Similarity=0.660 Sum_probs=199.3
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+||||||+|||+++||++|++|+++|+||..|++||+.|.+.++++|++++++++... ...++.|.++|+|+++||+.+
T Consensus 86 ~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~-~~~~~~L~~ia~t~l~ski~~ 164 (519)
T TIGR02341 86 VGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDK-TKFRDDLLNIARTTLSSKILS 164 (519)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcc-cccHHHHHHHHHHHhhhhhhh
Confidence 6999999999999999999999999999999999999999999999999999875321 112578999999999999999
Q ss_pred hhhchhHHHHHHHHHhhcc------c------------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD------L------------------------------------------------------ 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~------~------------------------------------------------------ 100 (219)
.+.+.|+++.++|+..+.+ +
T Consensus 165 ~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~~~~~~~~n~~Ili~~~~Le~~~~~~~~ 244 (519)
T TIGR02341 165 QHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDSYLDEGFLLEKKIGVNQPKRIENAKILIANTPMDTDKVKVFG 244 (519)
T ss_pred hHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcccceEEeeEEEeccCCCCCceeeccccEEEEecCCCCCccccCC
Confidence 9999999999999987621 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 245 ~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~~tGa~ii~ 324 (519)
T TIGR02341 245 SRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLALVTGGEIVS 324 (519)
T ss_pred ceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEec
Confidence
Q ss_pred -------------------------eeEEecccCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccccccHH
Q psy17073 101 -------------------------FNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAI 155 (219)
Q Consensus 101 -------------------------~~~~~~~~~~~~~tI~irg~t~~~l~E~er~i~dal~v~~~~~~~~~~v~GGG~~ 155 (219)
|++|++|++++.|||+|||+|+.+++|+||+++||+++++++++++++|||||++
T Consensus 325 ~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~ 404 (519)
T TIGR02341 325 TFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKLGEACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCS 404 (519)
T ss_pred ccccCCccccccCceEEEEEECCEEEEEEEcCCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHH
Confidence 7888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy17073 156 EMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGR 215 (219)
Q Consensus 156 e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~ 215 (219)
|++++..|++++++.++++|+++++|++||+.||++|++|||+||.+++.+|++.|++|+
T Consensus 405 e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~ 464 (519)
T TIGR02341 405 EMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGN 464 (519)
T ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC
Confidence 999999999998889999999999999999999999999999999999999999998764
No 13
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.5e-50 Score=375.00 Aligned_cols=212 Identities=37% Similarity=0.662 Sum_probs=198.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+||||||+|||+++||+++++|+++|+||+.|++||+.|++.++++|+++++|++..+ ++.+.++|+|+++||+.+
T Consensus 79 ~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~----~~~l~~va~tsl~sK~~~ 154 (517)
T TIGR02342 79 AGDGTTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSD----REILIKSATTSLSSKVVS 154 (517)
T ss_pred hCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccC----HHHHHHHHHHHhccccch
Confidence 6999999999999999999999999999999999999999999999999999876434 678999999999999999
Q ss_pred hhhchhHHHHHHHHHhhcc------c------------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD------L------------------------------------------------------ 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~------~------------------------------------------------------ 100 (219)
.+.++|++++++|+..+.+ +
T Consensus 155 ~~~~~ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~ 234 (517)
T TIGR02342 155 QYSSLLAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQISP 234 (517)
T ss_pred hHHHHHHHHHHHHHHHHhccccCCccCHHHeeEEeccCCChhhcEEEeeEEEeccccccCCCCccccCCcEEEEecCCCC
Confidence 9999999999999977731 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~Ler 314 (517)
T TIGR02342 235 PKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEF 314 (517)
T ss_pred CcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHH
Confidence
Q ss_pred ------------------------------------eeEEecccC-CceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy17073 101 ------------------------------------FNVFSGCKN-ARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTI 143 (219)
Q Consensus 101 ------------------------------------~~~~~~~~~-~~~~tI~irg~t~~~l~E~er~i~dal~v~~~~~ 143 (219)
|++|++|++ ++.|||+|||||+.+++|+||+++||++++++++
T Consensus 315 Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~ 394 (517)
T TIGR02342 315 ICKTIGCKPIASIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLV 394 (517)
T ss_pred HHHHHCCEEEcchhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 567788887 4899999999999999999999999999999999
Q ss_pred HcCcccccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC
Q psy17073 144 RNHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGRL 216 (219)
Q Consensus 144 ~~~~~v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~ 216 (219)
+++++|||||++|++++..|++++++.++++|+++++|++||+.||++|++|||+||.+++++|++.|++|+.
T Consensus 395 ~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~ 467 (517)
T TIGR02342 395 KKRGLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEK 467 (517)
T ss_pred hCCCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999988899999999999999999999999999999999999999999987753
No 14
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=3.3e-50 Score=375.36 Aligned_cols=211 Identities=46% Similarity=0.768 Sum_probs=198.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcc-
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLI- 79 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~- 79 (219)
+||||||+|||+++||+++.+|+++|+||..|++||+.|++.++++|++++++++..+ ++.+.++|+|+++||+.
T Consensus 86 ~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~----~~~L~~ia~tsl~sk~~~ 161 (519)
T TIGR02339 86 VGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPED----RDLLKKVAETSLTGKASA 161 (519)
T ss_pred hCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCccc----HHHHHHHHHhhhcccccc
Confidence 6999999999999999999999999999999999999999999999999999886434 67899999999999999
Q ss_pred hhhhchhHHHHHHHHHhhcc---------------c--------------------------------------------
Q psy17073 80 HQQKGFFSKMVVDAVMSLDD---------------L-------------------------------------------- 100 (219)
Q Consensus 80 ~~~~~~i~~l~~~Av~~v~~---------------~-------------------------------------------- 100 (219)
+.+.++|++++++|+.++++ +
T Consensus 162 ~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~kIlll~~~L 241 (519)
T TIGR02339 162 EVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMPKRVKNAKIALLDAPL 241 (519)
T ss_pred chhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCCCccccCCCcEEEEeccc
Confidence 78899999999999976631 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 242 e~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~rIa~ 321 (519)
T TIGR02339 242 EVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEKLAR 321 (519)
T ss_pred cccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHHHHH
Confidence
Q ss_pred ---------------------------------eeEEecccCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCc
Q psy17073 101 ---------------------------------FNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHA 147 (219)
Q Consensus 101 ---------------------------------~~~~~~~~~~~~~tI~irg~t~~~l~E~er~i~dal~v~~~~~~~~~ 147 (219)
|++|++|+++..|||+|||||+.+++|+||+++|||+++++++++|+
T Consensus 322 ~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~ 401 (519)
T TIGR02339 322 ATGAKIVSSIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNPKAVTILLRGGTEHVVDELERSIQDALHVVASALEDGK 401 (519)
T ss_pred HhCCEEeCchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 78889998889999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy17073 148 VVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGR 215 (219)
Q Consensus 148 ~v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~ 215 (219)
+|||||++||+++..|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|++.|++++
T Consensus 402 vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~ 469 (519)
T TIGR02339 402 VVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGN 469 (519)
T ss_pred EeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccC
Confidence 99999999999999999998889999999999999999999999999999999999999999998653
No 15
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4e-50 Score=375.05 Aligned_cols=214 Identities=64% Similarity=1.036 Sum_probs=199.4
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+||||||+|||+++||+++++|+++|+||..|++||+.|.+.++++|++++++++..+ ...++.+.++|+|+++||+.+
T Consensus 87 ~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~-~~~~~~l~~va~tsl~sK~~~ 165 (522)
T TIGR02345 87 VGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVK-GEQREVLEKCAATALNSKLIA 165 (522)
T ss_pred hCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcc-cccHHHHHHHHHHHhcccccc
Confidence 6999999999999999999999999999999999999999999999999999886321 112578999999999999999
Q ss_pred hhhchhHHHHHHHHHhhcc---------c---------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD---------L--------------------------------------------------- 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~---------~--------------------------------------------------- 100 (219)
.++++|++++++|+.++++ +
T Consensus 166 ~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~~Le~~~ 245 (522)
T TIGR02345 166 HEKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNVELELKA 245 (522)
T ss_pred chHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHHhcceecceEEecccCccccccCCceeccceEEEEecCcccCc
Confidence 9999999999999987630 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 246 ~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ria~~tga 325 (522)
T TIGR02345 246 EKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRVVKACGG 325 (522)
T ss_pred cccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCC
Confidence
Q ss_pred -----------------------------eeEEecccCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCccccc
Q psy17073 101 -----------------------------FNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAG 151 (219)
Q Consensus 101 -----------------------------~~~~~~~~~~~~~tI~irg~t~~~l~E~er~i~dal~v~~~~~~~~~~v~G 151 (219)
|++|++|+++++|||+|||+|+.+++|+||+++|||++++++++++++|||
T Consensus 326 ~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpG 405 (522)
T TIGR02345 326 SIQSTTSDLEADVLGTCALFEERQIGSERYNYFTGCPHAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAG 405 (522)
T ss_pred eEEcchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeC
Confidence 788999988899999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy17073 152 GGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGR 215 (219)
Q Consensus 152 GG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~ 215 (219)
||++|++++..|++++++.++++++++++|++||+.||++|++|||+|+.+++.+|++.|+.++
T Consensus 406 GG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~ 469 (522)
T TIGR02345 406 GGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGG 469 (522)
T ss_pred CCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999998889999999999999999999999999999999999999999998764
No 16
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.6e-50 Score=373.05 Aligned_cols=211 Identities=39% Similarity=0.685 Sum_probs=199.2
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+||||||+|||+++|++++++++++|+||..|++||+.|.+.++++|++++++++..+ ++.+.++|+|+++||+.+
T Consensus 78 ~GDGTtt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~----~~~l~~va~ts~~sK~~~ 153 (515)
T cd03338 78 AGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLND----RESLIKSATTSLNSKVVS 153 (515)
T ss_pred hcCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCC----HHHHHHHHHHHhccccch
Confidence 6999999999999999999999999999999999999999999999999999886434 678999999999999999
Q ss_pred hhhchhHHHHHHHHHhhcc-------------c-----------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD-------------L----------------------------------------------- 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~-------------~----------------------------------------------- 100 (219)
.++++|++++++|+.++++ +
T Consensus 154 ~~~~~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~ 233 (515)
T cd03338 154 QYSSLLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSP 233 (515)
T ss_pred hhHHHHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcCCCCccccCCcEEEEeccccc
Confidence 9999999999999988731 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 234 ~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~Ler 313 (515)
T cd03338 234 PKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEF 313 (515)
T ss_pred cccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHH
Confidence
Q ss_pred ------------------------------------eeEEecccC-CceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy17073 101 ------------------------------------FNVFSGCKN-ARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTI 143 (219)
Q Consensus 101 ------------------------------------~~~~~~~~~-~~~~tI~irg~t~~~l~E~er~i~dal~v~~~~~ 143 (219)
|+||++|++ ++.|||+|||+|+.+++|+||+++||++++++++
T Consensus 314 Ia~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~ 393 (515)
T cd03338 314 ICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLV 393 (515)
T ss_pred HHHHHCCEEecccccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 678888887 7999999999999999999999999999999999
Q ss_pred HcCcccccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy17073 144 RNHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGR 215 (219)
Q Consensus 144 ~~~~~v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~ 215 (219)
++|++|||||++|++++..|++++.+.++++|+++++|++||+.||++|++|||+||.+++.+|++.|++|+
T Consensus 394 ~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~ 465 (515)
T cd03338 394 KKRALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGE 465 (515)
T ss_pred hCCCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC
Confidence 999999999999999999999998888999999999999999999999999999999999999999998764
No 17
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-49 Score=373.17 Aligned_cols=211 Identities=40% Similarity=0.649 Sum_probs=197.8
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh-cccccCCCchhhHHHHHHHHHHhhhhhcc
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDEL-AVKIQKSDSGEYRGLLEKCAATALSSKLI 79 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~-s~~v~~~~~~~~~~~l~~va~tsl~sK~~ 79 (219)
+||||||+|||+++||+++.+|+++|+||+.|++||+.|++.++++|+++ +++++..+ .+.+.++|+|+++||+.
T Consensus 82 ~GDGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~----~~~l~~va~tsl~sK~~ 157 (536)
T TIGR02340 82 VGDGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELG----REALINVAKTSMSSKII 157 (536)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccc----HHHHHHHHHHHhccccc
Confidence 69999999999999999999999999999999999999999999999975 88876433 67899999999999999
Q ss_pred hhhhchhHHHHHHHHHhhc----------cc-------------------------------------------------
Q psy17073 80 HQQKGFFSKMVVDAVMSLD----------DL------------------------------------------------- 100 (219)
Q Consensus 80 ~~~~~~i~~l~~~Av~~v~----------~~------------------------------------------------- 100 (219)
+.++++|++++++|+..++ ++
T Consensus 158 ~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~m~~~~~n~kIli~~~~L 237 (536)
T TIGR02340 158 GLDSDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNL 237 (536)
T ss_pred hhhHHHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCccccEEEEEEEEecccCCCCCcceecCCcEEEEecCC
Confidence 9999999999999998762 00
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 238 ~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~ 317 (536)
T TIGR02340 238 QKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAK 317 (536)
T ss_pred CCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHH
Confidence
Q ss_pred ---------------------------------------eeEEecccCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Q psy17073 101 ---------------------------------------FNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRR 141 (219)
Q Consensus 101 ---------------------------------------~~~~~~~~~~~~~tI~irg~t~~~l~E~er~i~dal~v~~~ 141 (219)
|++|++|+++++|||+|||+|+.+++|+||+++|||+++++
T Consensus 318 ~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~ 397 (536)
T TIGR02340 318 ATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGRKSASIILRGANDFMLDEMERSLHDALCVVKR 397 (536)
T ss_pred HhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHH
Confidence 68888898889999999999999999999999999999999
Q ss_pred HHHcCcccccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy17073 142 TIRNHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGR 215 (219)
Q Consensus 142 ~~~~~~~v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~ 215 (219)
++++|++|||||++|++++..|++++...++++++++++|++||+.||++|++|||+||.+++.+|++.|++|+
T Consensus 398 ~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~ 471 (536)
T TIGR02340 398 TLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQ 471 (536)
T ss_pred HhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC
Confidence 99999999999999999999999998888999999999999999999999999999999999999999998763
No 18
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.4e-49 Score=371.66 Aligned_cols=212 Identities=36% Similarity=0.626 Sum_probs=197.3
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+||||||+|+||++||+++.+|+++|+||..|++||+.|++.++++|++++++++.+ .+..+.+.++|+|+++||+.+
T Consensus 93 ~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~--~~~~~~l~~ia~tsl~sk~~~ 170 (526)
T cd03339 93 IGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFS--PDNKEPLIQTAMTSLGSKIVS 170 (526)
T ss_pred hcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCC--cccHHHHHHHHHHhhcccchh
Confidence 699999999999999999999999999999999999999999999999999987531 112678999999999999998
Q ss_pred hhhchhHHHHHHHHHhhcc-------c-----------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD-------L----------------------------------------------------- 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~-------~----------------------------------------------------- 100 (219)
.+.+.|++++++|+..+.+ +
T Consensus 171 ~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~n~kI~ll~~~le~~~ 250 (526)
T cd03339 171 RCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCPFEPPK 250 (526)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHcceeeeEEEecccCCCCCCceecCCCEEEEEecccCCc
Confidence 8899999999999977621 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 251 ~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~LerIa~~tGa 330 (526)
T cd03339 251 PKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIELIAIATGG 330 (526)
T ss_pred cccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHHHHHHHHhCC
Confidence
Q ss_pred -------------------------------eeEEecccCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCccc
Q psy17073 101 -------------------------------FNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVV 149 (219)
Q Consensus 101 -------------------------------~~~~~~~~~~~~~tI~irg~t~~~l~E~er~i~dal~v~~~~~~~~~~v 149 (219)
|+||++|++++.|||+|||+|+.+++|+||+++|||+++++++++|++|
T Consensus 331 ~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vv 410 (526)
T cd03339 331 RIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIV 410 (526)
T ss_pred EEecchhhCChhhcccCceEEEEEecCCCcEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEE
Confidence 5778899999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy17073 150 AGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQG 214 (219)
Q Consensus 150 ~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~ 214 (219)
||||++|++++..|++++...++++|+++++|++||+.||++|++|||+|+.+++++|+..|+++
T Consensus 411 pGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~ 475 (526)
T cd03339 411 YGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKE 475 (526)
T ss_pred eCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999888999999999999999999999999999999999999999999754
No 19
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.5e-49 Score=371.79 Aligned_cols=212 Identities=35% Similarity=0.610 Sum_probs=197.2
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+||||||+||||++||+++++|+++|+||..|++||+.|++.++++|++++++++.. + +.++.+.++|+|++++|+.+
T Consensus 97 ~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~-~-~~~~~l~~ia~t~l~sK~~~ 174 (532)
T TIGR02343 97 IGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDD-N-NNKEPLIQAAKTSLGSKIVS 174 (532)
T ss_pred hcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcC-C-CCHHHHHHHHHHhhccchhh
Confidence 699999999999999999999999999999999999999999999999999987521 1 12678999999999999988
Q ss_pred hhhchhHHHHHHHHHhhcc-------c-----------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD-------L----------------------------------------------------- 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~-------~----------------------------------------------------- 100 (219)
.+.+.|++++++|+..+.+ +
T Consensus 175 ~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m~~~~~n~kI~l~~~~le~~~ 254 (532)
T TIGR02343 175 KCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCPFEPPK 254 (532)
T ss_pred HHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccceeEeeEEEecCcCCCCCCeeecCCcEEEEEeeccccc
Confidence 8899999999999987621 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 255 ~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~l~~Ia~~tGa 334 (532)
T TIGR02343 255 PKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHELELIAIATGG 334 (532)
T ss_pred cccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHHHHHHHHHhCC
Confidence
Q ss_pred -------------------------------eeEEecccCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCccc
Q psy17073 101 -------------------------------FNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVV 149 (219)
Q Consensus 101 -------------------------------~~~~~~~~~~~~~tI~irg~t~~~l~E~er~i~dal~v~~~~~~~~~~v 149 (219)
|+||++|++++.|||+|||+|+.+++|+||+++||+++++++++++++|
T Consensus 335 ~~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~vv 414 (532)
T TIGR02343 335 RIVPRFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRIV 414 (532)
T ss_pred EEecccccCCHhHCcccceEEEEEecCCcceEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 5778899988999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy17073 150 AGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQG 214 (219)
Q Consensus 150 ~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~ 214 (219)
||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++++|++.|+++
T Consensus 415 pGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~ 479 (532)
T TIGR02343 415 YGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKE 479 (532)
T ss_pred eCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999889999999999999999999999999999999999999999999765
No 20
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.2e-49 Score=369.63 Aligned_cols=211 Identities=43% Similarity=0.748 Sum_probs=199.0
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+||||||+|||+++|++++.+++++|+||..|++||++|.+.++++|++++.+++..+ ++.+.++|+|+++||+.+
T Consensus 85 ~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~----~~~l~~va~ts~~sk~~~ 160 (517)
T cd03343 85 VGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDD----KDTLRKIAKTSLTGKGAE 160 (517)
T ss_pred hCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCC----HHHHHHHHHHhhcccchh
Confidence 6999999999999999999999999999999999999999999999999999986434 678999999999999999
Q ss_pred hhhchhHHHHHHHHHhhcc------------c------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD------------L------------------------------------------------ 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~------------~------------------------------------------------ 100 (219)
.+.++|++++++|+.++++ +
T Consensus 161 ~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m~~~~~n~~Illl~~~Le~ 240 (517)
T cd03343 161 AAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDAPLEV 240 (517)
T ss_pred hHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCCCCccccCCCcEEEEeccccC
Confidence 9999999999999977621 1
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 241 ~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia~~t 320 (517)
T cd03343 241 KKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLARAT 320 (517)
T ss_pred CccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHHHHHHh
Confidence
Q ss_pred -------------------------------eeEEecccCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCccc
Q psy17073 101 -------------------------------FNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVV 149 (219)
Q Consensus 101 -------------------------------~~~~~~~~~~~~~tI~irg~t~~~l~E~er~i~dal~v~~~~~~~~~~v 149 (219)
|++|++|+++..|||+|||||+.+++|+||+++|||+++++++++|++|
T Consensus 321 Ga~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~vv 400 (517)
T cd03343 321 GAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNPKAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVV 400 (517)
T ss_pred CCEEecchhhCChhhCCccceEEEEEECCeEEEEEEcCCCCceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 7888899988999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy17073 150 AGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGR 215 (219)
Q Consensus 150 ~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~ 215 (219)
||||++|++++..|++++...++++|+++++|++||+.||++|++|||+|+.+++.+|++.|++|+
T Consensus 401 pGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~ 466 (517)
T cd03343 401 AGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGN 466 (517)
T ss_pred eCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccC
Confidence 999999999999999998889999999999999999999999999999999999999999998653
No 21
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.4e-49 Score=368.59 Aligned_cols=211 Identities=31% Similarity=0.605 Sum_probs=195.2
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc-cccCCCchhhHHHHHHHHHHhhhhhcc
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAV-KIQKSDSGEYRGLLEKCAATALSSKLI 79 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~-~v~~~~~~~~~~~l~~va~tsl~sK~~ 79 (219)
+||||||+|||+++||+++++++++|+||..|++||+.|++.++++|+++++ +++..+ ..+.+.++++|+++||+.
T Consensus 88 ~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~---~~~~l~~i~~tsl~sK~~ 164 (531)
T TIGR02346 88 IGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVR---NKKELIKALKASISSKQY 164 (531)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCC---CHHHHHHHHHHHhccccC
Confidence 6999999999999999999999999999999999999999999999999986 664211 157799999999999999
Q ss_pred hhhhchhHHHHHHHHHhhc-----cc------------------------------------------------------
Q psy17073 80 HQQKGFFSKMVVDAVMSLD-----DL------------------------------------------------------ 100 (219)
Q Consensus 80 ~~~~~~i~~l~~~Av~~v~-----~~------------------------------------------------------ 100 (219)
+. +++|++++++|+.+++ ++
T Consensus 165 ~~-~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~~~~~k~i~n~kI~l~~~~l~~~~~ 243 (531)
T TIGR02346 165 GN-EDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREAEGSVKRVKNAKVAVFSCPLDTATT 243 (531)
T ss_pred ch-HHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhceeEeeeEEeccCCCCceeccCCCEEEEecCcCCCcc
Confidence 87 9999999999998763 00
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~Ia~~tGa~ 323 (531)
T TIGR02346 244 ETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRLCKTVGAT 323 (531)
T ss_pred cCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHHHHHHCCE
Confidence
Q ss_pred ----------------------------eeEEeccc-CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCccccc
Q psy17073 101 ----------------------------FNVFSGCK-NARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAG 151 (219)
Q Consensus 101 ----------------------------~~~~~~~~-~~~~~tI~irg~t~~~l~E~er~i~dal~v~~~~~~~~~~v~G 151 (219)
|.+|++++ .+++|||+|||||+.+++|+||+++|||+++++++++|++|||
T Consensus 324 ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpG 403 (531)
T TIGR02346 324 PLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPG 403 (531)
T ss_pred EecccccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEC
Confidence 67888887 5899999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy17073 152 GGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGR 215 (219)
Q Consensus 152 GG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~ 215 (219)
||++||+++..|++++++.++++|+++++|++||+.||++|++|||+||.+++.+|++.|++++
T Consensus 404 GG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~ 467 (531)
T TIGR02346 404 AGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGN 467 (531)
T ss_pred cCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Confidence 9999999999999998888999999999999999999999999999999999999999997654
No 22
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=5.3e-49 Score=362.69 Aligned_cols=211 Identities=47% Similarity=0.768 Sum_probs=198.9
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+||||||+|||+++|++++.+++++|+||..|++||+.|++.++++|++++.+++..+ ++.+.++++|+++||+.+
T Consensus 78 ~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~----~~~l~~ia~tsl~sK~~~ 153 (464)
T cd00309 78 VGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVED----REELLKVATTSLNSKLVS 153 (464)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCC----HHHHHHHhHhcccccccc
Confidence 6999999999999999999999999999999999999999999999999999864434 678999999999999999
Q ss_pred hhhchhHHHHHHHHHhhcc------c------------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD------L------------------------------------------------------ 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~------~------------------------------------------------------ 100 (219)
.++++|++++++|++++++ .
T Consensus 154 ~~~~~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili~~~~Le~lIi 233 (464)
T cd00309 154 GGDDFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEYVVI 233 (464)
T ss_pred cchHHHHHHHHHHHHHhccccCccccceEEEEecCCCCcccceeeeeEEEecCCCCCCCceeecCceEEEEecCcceEEe
Confidence 9999999999999988732 0
Q ss_pred -------------------------------------------------------------------eeEEecccCCceE
Q psy17073 101 -------------------------------------------------------------------FNVFSGCKNARTC 113 (219)
Q Consensus 101 -------------------------------------------------------------------~~~~~~~~~~~~~ 113 (219)
|++|++|+.++.|
T Consensus 234 ~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~ 313 (464)
T cd00309 234 AEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGGKVA 313 (464)
T ss_pred cCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCcccCccccEEEEEEEcCeeEEEEEecCCCCEE
Confidence 6778888888999
Q ss_pred EEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Q psy17073 114 TIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLS 193 (219)
Q Consensus 114 tI~irg~t~~~l~E~er~i~dal~v~~~~~~~~~~v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~ 193 (219)
||+|||||+.+++|+||+++||+++++++++++++|||||++|++++..|++++...++++|+++++|++||+.||++|+
T Consensus 314 TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~ 393 (464)
T cd00309 314 TILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLA 393 (464)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHhcCC
Q psy17073 194 DNAGFDATNILNKLRQKHAQGR 215 (219)
Q Consensus 194 ~NaG~d~~~~~~~l~~~h~~~~ 215 (219)
+|||+|+.+++.+|++.|.+++
T Consensus 394 ~NaG~d~~~~~~~l~~~~~~~~ 415 (464)
T cd00309 394 ENAGLDPIEVVTKLRAKHAEGG 415 (464)
T ss_pred HHcCCCHHHHHHHHHHHhhccC
Confidence 9999999999999999997753
No 23
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.4e-48 Score=357.40 Aligned_cols=211 Identities=36% Similarity=0.618 Sum_probs=194.5
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccc-ccCCCchhhHHHHHHHHHHhhhhhcc
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVK-IQKSDSGEYRGLLEKCAATALSSKLI 79 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~-v~~~~~~~~~~~l~~va~tsl~sK~~ 79 (219)
+||||||+|||+++||+++.+++++|+||..|++||+.|++.++++|++++++ ++..+ ..+.+.++++|+++||..
T Consensus 78 ~GDGTTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~---~~~~l~~i~~t~l~sk~~ 154 (472)
T cd03341 78 IGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLR---NKEEVSKALKTAIASKQY 154 (472)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCcc---CHHHHHHHHHHHhccccc
Confidence 69999999999999999999999999999999999999999999999999866 43211 156799999999999998
Q ss_pred hhhhchhHHHHHHHHHhhc-----cc------------------------------------------------------
Q psy17073 80 HQQKGFFSKMVVDAVMSLD-----DL------------------------------------------------------ 100 (219)
Q Consensus 80 ~~~~~~i~~l~~~Av~~v~-----~~------------------------------------------------------ 100 (219)
+ ++++|++++++|+.+++ .+
T Consensus 155 ~-~~~~l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~~~~~~~~n~~Ili~~~~Le~g~~ 233 (472)
T cd03341 155 G-NEDFLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREPEGSVKRVKKAKVAVFSCPFDIGVN 233 (472)
T ss_pred c-hHHHHHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccceEEeeEEEccccCCCceeccCCcEEEEeccccCCCe
Confidence 7 68999999999998762 00
Q ss_pred ----------------------------------------------------------------------eeEEecccC-
Q psy17073 101 ----------------------------------------------------------------------FNVFSGCKN- 109 (219)
Q Consensus 101 ----------------------------------------------------------------------~~~~~~~~~- 109 (219)
|++|++|+.
T Consensus 234 lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~ 313 (472)
T cd03341 234 VIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKED 313 (472)
T ss_pred EEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCHhHCCCceEEEEEEECCeeEEEEEccCCC
Confidence 788888877
Q ss_pred CceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Q psy17073 110 ARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIP 189 (219)
Q Consensus 110 ~~~~tI~irg~t~~~l~E~er~i~dal~v~~~~~~~~~~v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip 189 (219)
++.|||+|||||+.+++|+||+++|||+++++++++|++|||||++|++++..|+++++..++++++++++|++||+.||
T Consensus 314 ~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip 393 (472)
T cd03341 314 SKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVP 393 (472)
T ss_pred CCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy17073 190 RQLSDNAGFDATNILNKLRQKHAQGR 215 (219)
Q Consensus 190 ~~L~~NaG~d~~~~~~~l~~~h~~~~ 215 (219)
++|++|||+||.+++.+|+..|++++
T Consensus 394 ~~L~~NaG~d~~~~~~~l~~~h~~~~ 419 (472)
T cd03341 394 RTLAENAGLDATEVLSELYAAHQKGN 419 (472)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHccC
Confidence 99999999999999999999997754
No 24
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.1e-44 Score=339.16 Aligned_cols=198 Identities=22% Similarity=0.377 Sum_probs=182.8
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+||||||+|+||++||+++++|+++|+||..|++||+.|++.++++|++++++++ + .+.+.++|+|+++
T Consensus 84 ~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~--~----~~~l~~va~ts~~----- 152 (542)
T PRK12849 84 AGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVS--G----SEEIAQVATISAN----- 152 (542)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHhcC-----
Confidence 6999999999999999999999999999999999999999999999999999875 3 5679999998854
Q ss_pred hhhchhHHHHHHHHHhhcc-----c-------------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD-----L------------------------------------------------------- 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~-----~------------------------------------------------------- 100 (219)
++++|++++++|+..++. +
T Consensus 153 -~~~~l~~lv~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~ 231 (542)
T PRK12849 153 -GDEEIGELIAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQD 231 (542)
T ss_pred -ChHHHHHHHHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCCHHH
Confidence 589999999999998731 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 232 ~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~ 311 (542)
T PRK12849 232 LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEV 311 (542)
T ss_pred HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccC
Confidence
Q ss_pred -----------------eeEEecccCC-----------------------------------ceEEEEecCCCHHHHHHH
Q psy17073 101 -----------------FNVFSGCKNA-----------------------------------RTCTIIVRGGAEQFLEET 128 (219)
Q Consensus 101 -----------------~~~~~~~~~~-----------------------------------~~~tI~irg~t~~~l~E~ 128 (219)
|++|++|+++ +.|||+|||+|+.+++|+
T Consensus 312 ~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~ 391 (542)
T PRK12849 312 TLDDLGRAKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKER 391 (542)
T ss_pred CHHHCceeeEEEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHH
Confidence 5667777654 589999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCcccccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy17073 129 ERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLR 208 (219)
Q Consensus 129 er~i~dal~v~~~~~~~~~~v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~ 208 (219)
||+++||++++++++++| +|||||++|++++..|++++ +.++++|+++++|++||+.||++||+|||+|+.+++.+|+
T Consensus 392 er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ls~~L~~~~-~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~ 469 (542)
T PRK12849 392 KDRVEDALNATRAAVEEG-IVPGGGVALLRAAKALDELA-GLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVL 469 (542)
T ss_pred HHHHHHHHHHHHHHHHcC-eecCCCHHHHHHHHHHHHhh-CCChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 999999999999999997 99999999999999999998 8999999999999999999999999999999999999999
Q ss_pred HHHh
Q psy17073 209 QKHA 212 (219)
Q Consensus 209 ~~h~ 212 (219)
+.|.
T Consensus 470 ~~~~ 473 (542)
T PRK12849 470 ELED 473 (542)
T ss_pred hhCC
Confidence 8773
No 25
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-45 Score=340.01 Aligned_cols=205 Identities=39% Similarity=0.625 Sum_probs=186.8
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+||||||+||||++||++|++++++|+||+.|++||++|.+.++++|++++.+++..+ .+. +++.|+++||..+
T Consensus 81 ~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~----~~~--~~~~t~v~sk~~~ 154 (524)
T COG0459 81 AGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSE----EEL--KIAITSVASKSAN 154 (524)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcch----hhh--hhhhheeeeeecc
Confidence 6999999999999999999999999999999999999999999999999999987543 222 8999999999987
Q ss_pred hhhchhHHHHHHHHHhhcc----c--------------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD----L-------------------------------------------------------- 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~----~-------------------------------------------------------- 100 (219)
.. ++|++++++||.++++ +
T Consensus 155 ~~-~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~~~k~ 233 (524)
T COG0459 155 SD-EEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKP 233 (524)
T ss_pred Ch-HHHHHHHHHHHHHhcccccccCCeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEEccccccccc
Confidence 66 9999999999999843 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 234 ~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ 313 (524)
T COG0459 234 ELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLG 313 (524)
T ss_pred cCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHcc
Confidence
Q ss_pred ---------------------------------eeEEecccC--CceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q psy17073 101 ---------------------------------FNVFSGCKN--ARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRN 145 (219)
Q Consensus 101 ---------------------------------~~~~~~~~~--~~~~tI~irg~t~~~l~E~er~i~dal~v~~~~~~~ 145 (219)
+++|++|+. +++|||++||+|+.+++|+||+++|||+++++++++
T Consensus 314 ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~ 393 (524)
T COG0459 314 GAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEE 393 (524)
T ss_pred CceEEeecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455664 789999999999999999999999999999999999
Q ss_pred CcccccccHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy17073 146 HAVVAGGGAIEMELSKALRDYSRSIAG-KEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHA 212 (219)
Q Consensus 146 ~~~v~GGG~~e~~l~~~l~~~~~~~~~-~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~ 212 (219)
|++|||||++|++++..|++++.+.++ ++|+++++|++||+.||++|++|||+||.+++.+|++.|.
T Consensus 394 g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~ 461 (524)
T COG0459 394 GKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHA 461 (524)
T ss_pred CCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccc
Confidence 999999999999999999998545555 9999999999999999999999999999999999999886
No 26
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.9e-44 Score=336.44 Aligned_cols=198 Identities=25% Similarity=0.413 Sum_probs=184.1
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+||||||+|+||++||+++++++++|+||..|++||+.|.+.++++|++++++++ + .+.+.++|+|++++
T Consensus 82 ~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~--~----~~~l~~va~ts~~~---- 151 (520)
T cd03344 82 AGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVK--T----KEEIAQVATISANG---- 151 (520)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHhcCC----
Confidence 6999999999999999999999999999999999999999999999999999885 4 67899999999875
Q ss_pred hhhchhHHHHHHHHHhhcc---------------c---------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD---------------L--------------------------------------------- 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~---------------~--------------------------------------------- 100 (219)
++++++++++|+..++. .
T Consensus 152 --~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~~~ 229 (520)
T cd03344 152 --DEEIGELIAEAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQE 229 (520)
T ss_pred --hHHHHHHHHHHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCCHHH
Confidence 78999999999988731 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 230 l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~ 309 (520)
T cd03344 230 LLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDV 309 (520)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccC
Confidence
Q ss_pred -----------------eeEEecccCC-----------------------------------ceEEEEecCCCHHHHHHH
Q psy17073 101 -----------------FNVFSGCKNA-----------------------------------RTCTIIVRGGAEQFLEET 128 (219)
Q Consensus 101 -----------------~~~~~~~~~~-----------------------------------~~~tI~irg~t~~~l~E~ 128 (219)
|+||++|+.+ +.|||+|||+|+.+++|+
T Consensus 310 ~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~ 389 (520)
T cd03344 310 TLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEK 389 (520)
T ss_pred CHHHCCcceEEEEeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHH
Confidence 5667777554 599999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCcccccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy17073 129 ERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLR 208 (219)
Q Consensus 129 er~i~dal~v~~~~~~~~~~v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~ 208 (219)
||+++||++++++++++| +|||||++|++++..|++++. .++++|+++++|++||+.||++||+|||+||.+++++|+
T Consensus 390 ~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~~~-~~~~~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~ 467 (520)
T cd03344 390 KDRVEDALNATRAAVEEG-IVPGGGVALLRASPALDKLKA-LNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVL 467 (520)
T ss_pred HHHHHHHHHHHHHHHhcC-CCcCCcHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 999999999999999998 999999999999999999987 999999999999999999999999999999999999999
Q ss_pred HHHh
Q psy17073 209 QKHA 212 (219)
Q Consensus 209 ~~h~ 212 (219)
+.|.
T Consensus 468 ~~~~ 471 (520)
T cd03344 468 ESPD 471 (520)
T ss_pred hhcC
Confidence 8885
No 27
>KOG0364|consensus
Probab=100.00 E-value=8.9e-46 Score=327.21 Aligned_cols=211 Identities=38% Similarity=0.680 Sum_probs=202.7
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
||||||||++|++|+|.++..++++++||+.|++.|.+|++.++..++.++++++..+ +..++++.++++.+|+.+
T Consensus 89 vgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~----~~km~~vi~~~v~tk~~~ 164 (527)
T KOG0364|consen 89 VGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKD----QAKMLRVINSSVGTKFNS 164 (527)
T ss_pred ccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCccc----HHHHHhhhhhhhhhhhhh
Confidence 7999999999999999999999999999999999999999999999999999988766 678999999999999999
Q ss_pred hhhchhHHHHHHHHHhhcc-----c-------------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD-----L------------------------------------------------------- 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~-----~------------------------------------------------------- 100 (219)
.|++.++++..+|+++|++ +
T Consensus 165 ~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkmrr~IenprivLlD~~Leyk 244 (527)
T KOG0364|consen 165 RWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKMRRAIENPRIVLLDCPLEYK 244 (527)
T ss_pred hhcchhhhHHHHHHHHhhhccCceechhhhccccccCcccccccceecceeeccccCcHHHHHHhhcCcEEEecCCccCC
Confidence 9999999999999999831 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 245 kGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rKtDn~ria~acg 324 (527)
T KOG0364|consen 245 KGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRKTDNNRIARACG 324 (527)
T ss_pred CCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhccccchhhhhcC
Confidence
Q ss_pred -------------------------------eeEEecccCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCccc
Q psy17073 101 -------------------------------FNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVV 149 (219)
Q Consensus 101 -------------------------------~~~~~~~~~~~~~tI~irg~t~~~l~E~er~i~dal~v~~~~~~~~~~v 149 (219)
|+||..|++|++|||++||||+.+++|.+|.+.||+.+.|+.+-+|+++
T Consensus 325 a~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pkaCtillrg~skdil~e~ernlqda~~varn~ii~Pklv 404 (527)
T KOG0364|consen 325 ARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPKACTILLRGPSKDILNEVERNLQDAMGVARNVIINPKLV 404 (527)
T ss_pred ceeccChhhCchhccCcccceeeeeccCchhhhhhhhcCCCcceEEEeccCchhHHHHHHHHhhhHHHHHHHhccCCccc
Confidence 8999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy17073 150 AGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGR 215 (219)
Q Consensus 150 ~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~ 215 (219)
||||++||.+|..|.+.+...++-++..|.+.+.||+.+||+|++|||.||+..++.++..|+.|.
T Consensus 405 PGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~ 470 (527)
T KOG0364|consen 405 PGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQ 470 (527)
T ss_pred CCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999884
No 28
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.5e-44 Score=336.77 Aligned_cols=197 Identities=22% Similarity=0.413 Sum_probs=182.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+||||||+|+|+++||+++++|+++|+||..|++||+.|++.++++|+++++|++ + .+.+.++|+|+++
T Consensus 84 ~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~--~----~~~l~~va~ts~~----- 152 (542)
T PRK00013 84 AGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVE--D----KEEIAQVATISAN----- 152 (542)
T ss_pred cCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHhccc-----
Confidence 6999999999999999999999999999999999999999999999999999875 3 5779999998864
Q ss_pred hhhchhHHHHHHHHHhhcc---c---------------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD---L--------------------------------------------------------- 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~---~--------------------------------------------------------- 100 (219)
+++++++++++|+..+++ +
T Consensus 153 -~~~~ls~lv~~Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~~~~ 231 (542)
T PRK00013 153 -GDEEIGKLIAEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQD 231 (542)
T ss_pred -chHHHHHHHHHHHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCccCCHHH
Confidence 589999999999988731 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 232 l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~ 311 (542)
T PRK00013 232 LLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDA 311 (542)
T ss_pred HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccC
Confidence
Q ss_pred -----------------eeEEecccCCc-----------------------------------eEEEEecCCCHHHHHHH
Q psy17073 101 -----------------FNVFSGCKNAR-----------------------------------TCTIIVRGGAEQFLEET 128 (219)
Q Consensus 101 -----------------~~~~~~~~~~~-----------------------------------~~tI~irg~t~~~l~E~ 128 (219)
|+||++|.+++ .+||+|||+|+.+++|+
T Consensus 312 ~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~ 391 (542)
T PRK00013 312 TLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEK 391 (542)
T ss_pred CHHHCCeeeEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHH
Confidence 57777776654 78999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCcccccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy17073 129 ERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLR 208 (219)
Q Consensus 129 er~i~dal~v~~~~~~~~~~v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~ 208 (219)
||+++||+++++++++++ +|||||++|++++..|+++ .+.++++|+++++|++||+.||++||+|||+|+.+++++|+
T Consensus 392 er~i~Dal~~vk~al~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~ 469 (542)
T PRK00013 392 KDRVEDALHATRAAVEEG-IVPGGGVALLRAAPALEAL-KGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEKVK 469 (542)
T ss_pred HHHHHHHHHHHHHHHHcC-cccCcHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999997 9999999999999999998 78899999999999999999999999999999999999999
Q ss_pred HHH
Q psy17073 209 QKH 211 (219)
Q Consensus 209 ~~h 211 (219)
+.|
T Consensus 470 ~~~ 472 (542)
T PRK00013 470 NGK 472 (542)
T ss_pred hhc
Confidence 988
No 29
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4.2e-44 Score=335.49 Aligned_cols=198 Identities=23% Similarity=0.391 Sum_probs=182.3
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+||||||+|+||++||+++.+|+++|+||..|++||+.|++.++++|++++.+++ + .+.|.++|++++++
T Consensus 85 ~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~--~----~~~l~~va~~s~~~---- 154 (544)
T PRK12850 85 AGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVT--S----SKEIAQVATISANG---- 154 (544)
T ss_pred hcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHhcCC----
Confidence 6999999999999999999999999999999999999999999999999998875 3 57799999988654
Q ss_pred hhhchhHHHHHHHHHhhcc-----c-------------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD-----L------------------------------------------------------- 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~-----~------------------------------------------------------- 100 (219)
++.|++++++|+..+++ +
T Consensus 155 --~~~l~~lv~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~ 232 (544)
T PRK12850 155 --DESIGEMIAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQD 232 (544)
T ss_pred --HHHHHHHHHHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccCCHHH
Confidence 78999999999988731 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 233 i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~ 312 (544)
T PRK12850 233 LLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENV 312 (544)
T ss_pred HHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccC
Confidence
Q ss_pred -----------------eeEEecccCC-----------------------------------ceEEEEecCCCHHHHHHH
Q psy17073 101 -----------------FNVFSGCKNA-----------------------------------RTCTIIVRGGAEQFLEET 128 (219)
Q Consensus 101 -----------------~~~~~~~~~~-----------------------------------~~~tI~irg~t~~~l~E~ 128 (219)
|+||++|.++ +.|||+|||+|+.+++|+
T Consensus 313 ~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~ 392 (544)
T PRK12850 313 TLDMLGRAKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEK 392 (544)
T ss_pred CHHHcCCCcEEEEEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHH
Confidence 5677776653 489999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCcccccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy17073 129 ERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLR 208 (219)
Q Consensus 129 er~i~dal~v~~~~~~~~~~v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~ 208 (219)
||+++||+++++++++++ +|||||++|++++..|+++ ...++++|+++++|++||+.||++||+|||+|+.+++.+|+
T Consensus 393 er~i~DAl~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~ 470 (544)
T PRK12850 393 KDRVDDALHATRAAVEEG-IVPGGGVALLRARSALRGL-KGANADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVA 470 (544)
T ss_pred HHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 999999999999999997 9999999999999999998 68899999999999999999999999999999999999999
Q ss_pred HHHh
Q psy17073 209 QKHA 212 (219)
Q Consensus 209 ~~h~ 212 (219)
+.|.
T Consensus 471 ~~~~ 474 (544)
T PRK12850 471 ELPG 474 (544)
T ss_pred hhCC
Confidence 8874
No 30
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=6.3e-44 Score=335.10 Aligned_cols=196 Identities=20% Similarity=0.356 Sum_probs=179.3
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+||||||+||||++||+++++|+++|+||..|++||+.|.+.++++|++++++++ + .+.+.++|+|++++
T Consensus 96 vGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~--~----~~~l~~va~ts~~~---- 165 (555)
T PTZ00114 96 AGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVK--T----KEDILNVATISANG---- 165 (555)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHHcCC----
Confidence 6999999999999999999999999999999999999999999999999999875 3 56799999998754
Q ss_pred hhhchhHHHHHHHHHhhcc---c---------------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD---L--------------------------------------------------------- 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~---~--------------------------------------------------------- 100 (219)
+++|++++++|+.++++ +
T Consensus 166 --~~~l~~li~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~~~~ 243 (555)
T PTZ00114 166 --DVEIGSLIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQS 243 (555)
T ss_pred --hHHHHHHHHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCCCHHH
Confidence 67899999999998731 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 244 i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~ 323 (555)
T PTZ00114 244 ILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDD 323 (555)
T ss_pred HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCccc
Confidence
Q ss_pred ------------------eeEEeccc-----------------------------------CCceEEEEecCCCHHHHHH
Q psy17073 101 ------------------FNVFSGCK-----------------------------------NARTCTIIVRGGAEQFLEE 127 (219)
Q Consensus 101 ------------------~~~~~~~~-----------------------------------~~~~~tI~irg~t~~~l~E 127 (219)
+++|+++. ++++|||+|||+|+.+++|
T Consensus 324 ~~~~~LG~a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E 403 (555)
T PTZ00114 324 FDPSMLGSAKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNE 403 (555)
T ss_pred CCHHHcCCCceEEEEeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHH
Confidence 34444443 5689999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCcccccccHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q psy17073 128 TERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSR--SIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILN 205 (219)
Q Consensus 128 ~er~i~dal~v~~~~~~~~~~v~GGG~~e~~l~~~l~~~~~--~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~ 205 (219)
++|+++||++++++++++| +|||||++|+++|..|++++. ..++++|+++++|++||+.||++||+|||+|+.++++
T Consensus 404 ~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~ 482 (555)
T PTZ00114 404 KKDRIEDALNATRAAVEEG-IVPGGGVALLRASKLLDKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVE 482 (555)
T ss_pred HHHHHHHHHHHHHHHHhcC-cccCCcHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 9999999999999999988 999999999999999999875 6789999999999999999999999999999999999
Q ss_pred HHHH
Q psy17073 206 KLRQ 209 (219)
Q Consensus 206 ~l~~ 209 (219)
+|++
T Consensus 483 ~l~~ 486 (555)
T PTZ00114 483 KILE 486 (555)
T ss_pred HHHh
Confidence 9976
No 31
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=6.6e-44 Score=334.46 Aligned_cols=198 Identities=22% Similarity=0.375 Sum_probs=180.9
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+|||||||||||++||+++++|+++|+||..|++||++|++.++++|++++++++ + .+++.++|++++++
T Consensus 85 ~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~--~----~~~l~~va~~s~~~---- 154 (545)
T PRK12852 85 AGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVA--S----SAEIAQVGTISANG---- 154 (545)
T ss_pred ecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--C----HHHHHHHHhhhcCC----
Confidence 6999999999999999999999999999999999999999999999999999875 2 35589999988654
Q ss_pred hhhchhHHHHHHHHHhhcc---c---------------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD---L--------------------------------------------------------- 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~---~--------------------------------------------------------- 100 (219)
++.|++++++|+.+++. +
T Consensus 155 --~~~l~~li~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~ 232 (545)
T PRK12852 155 --DAAIGKMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQA 232 (545)
T ss_pred --hHHHHHHHHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCccCCHHH
Confidence 78899999999998831 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 233 i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~ 312 (545)
T PRK12852 233 MLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENV 312 (545)
T ss_pred HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCC
Confidence
Q ss_pred -----------------eeEEecccC-----------------------------------CceEEEEecCCCHHHHHHH
Q psy17073 101 -----------------FNVFSGCKN-----------------------------------ARTCTIIVRGGAEQFLEET 128 (219)
Q Consensus 101 -----------------~~~~~~~~~-----------------------------------~~~~tI~irg~t~~~l~E~ 128 (219)
+++|+++.. ++.+||+|||+|+.+++|+
T Consensus 313 ~~~~lG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~ 392 (545)
T PRK12852 313 TLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEK 392 (545)
T ss_pred CHHHCCCCcEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHH
Confidence 566666554 3789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCcccccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy17073 129 ERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLR 208 (219)
Q Consensus 129 er~i~dal~v~~~~~~~~~~v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~ 208 (219)
||+++||++++++++++| +|||||++|++++..|++++.. ++++|+++++|++||+.||++||+|||+|+.+++++|+
T Consensus 393 er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~ 470 (545)
T PRK12852 393 KDRVEDALNATRAAVQEG-IVPGGGVALLRAKKAVGRINND-NADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKIL 470 (545)
T ss_pred HHHHHHHHHHHHHHHhcC-CCcCchHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999997 9999999999999999999876 78999999999999999999999999999999999999
Q ss_pred HHHh
Q psy17073 209 QKHA 212 (219)
Q Consensus 209 ~~h~ 212 (219)
+.|.
T Consensus 471 ~~~~ 474 (545)
T PRK12852 471 ENKS 474 (545)
T ss_pred hhcC
Confidence 8774
No 32
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=9.1e-44 Score=333.05 Aligned_cols=198 Identities=22% Similarity=0.385 Sum_probs=181.7
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+||||||+|+||++||+++.+|+++|+||..|++||+.|++.++++|++++++++ + .+.+.++|++++
T Consensus 85 ~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~--~----~~~l~~va~~s~------ 152 (541)
T PRK12851 85 AGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVT--T----NAEIAQVATISA------ 152 (541)
T ss_pred hCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHhc------
Confidence 6999999999999999999999999999999999999999999999999999875 3 567899998875
Q ss_pred hhhchhHHHHHHHHHhhcc---c---------------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD---L--------------------------------------------------------- 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~---~--------------------------------------------------------- 100 (219)
.++++|++++++|+.+++. +
T Consensus 153 ~~~~~l~~lv~~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~ 232 (541)
T PRK12851 153 NGDAEIGRLVAEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQD 232 (541)
T ss_pred cChHHHHHHHHHHHHHhcccCceEEEEccCCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcCcHHH
Confidence 3689999999999988731 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 233 i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~ 312 (541)
T PRK12851 233 LLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENV 312 (541)
T ss_pred HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcC
Confidence
Q ss_pred -----------------eeEEecccCC-----------------------------------ceEEEEecCCCHHHHHHH
Q psy17073 101 -----------------FNVFSGCKNA-----------------------------------RTCTIIVRGGAEQFLEET 128 (219)
Q Consensus 101 -----------------~~~~~~~~~~-----------------------------------~~~tI~irg~t~~~l~E~ 128 (219)
|+||++|+++ +.+||+|||+|+.+++|+
T Consensus 313 ~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~ 392 (541)
T PRK12851 313 TLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEK 392 (541)
T ss_pred CHHHcCCccEEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHH
Confidence 5677777654 388999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCcccccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy17073 129 ERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLR 208 (219)
Q Consensus 129 er~i~dal~v~~~~~~~~~~v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~ 208 (219)
||+++|||+++++++++| +|||||++|+++|..|++++.. ++++|+++++|++||+.||++||+|||+|+.+++++|+
T Consensus 393 er~i~DAl~a~~~al~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~ 470 (541)
T PRK12851 393 KDRVDDALHATRAAVEEG-IVPGGGVALLRAVKALDKLETA-NGDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLR 470 (541)
T ss_pred HHHHHHHHHHHHHHHHcC-cccCchHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 999999999999999998 9999999999999999999876 89999999999999999999999999999999999999
Q ss_pred HHHh
Q psy17073 209 QKHA 212 (219)
Q Consensus 209 ~~h~ 212 (219)
+.|.
T Consensus 471 ~~~~ 474 (541)
T PRK12851 471 EKPG 474 (541)
T ss_pred hhCC
Confidence 8874
No 33
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=3.1e-43 Score=328.59 Aligned_cols=196 Identities=22% Similarity=0.375 Sum_probs=179.3
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+||||||+|+||++||+++.+|+++|+||..|++||+.|++.++++|++++.+++ + .+.+.++|+|+.+
T Consensus 83 ~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~--~----~~~l~~va~ts~~----- 151 (524)
T TIGR02348 83 AGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVK--G----KKEIAQVATISAN----- 151 (524)
T ss_pred eCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHhcc-----
Confidence 6999999999999999999999999999999999999999999999999999875 4 5689999998864
Q ss_pred hhhchhHHHHHHHHHhhcc-----c-------------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD-----L------------------------------------------------------- 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~-----~------------------------------------------------------- 100 (219)
+++++++++++|+..++. +
T Consensus 152 -~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~ 230 (524)
T TIGR02348 152 -NDEEIGSLIAEAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKD 230 (524)
T ss_pred -ChHHHHHHHHHHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCCHHH
Confidence 489999999999988731 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 231 i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~ 310 (524)
T TIGR02348 231 LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEV 310 (524)
T ss_pred HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcC
Confidence
Q ss_pred -----------------eeEEecccCCc-----------------------------------eEEEEecCCCHHHHHHH
Q psy17073 101 -----------------FNVFSGCKNAR-----------------------------------TCTIIVRGGAEQFLEET 128 (219)
Q Consensus 101 -----------------~~~~~~~~~~~-----------------------------------~~tI~irg~t~~~l~E~ 128 (219)
|+||++|.+++ .+||+|||+|+.+++|+
T Consensus 311 ~~~~LG~~~~v~~~~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~ 390 (524)
T TIGR02348 311 TLDDLGKAKKVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEK 390 (524)
T ss_pred CHHHCCCceEEEEeecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHH
Confidence 45566665433 68999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCcccccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy17073 129 ERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLR 208 (219)
Q Consensus 129 er~i~dal~v~~~~~~~~~~v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~ 208 (219)
||+++||++++|+++++| +|||||++|++++..|++ +...++++|+++++|++||+.||++||+|||+||.+++++|+
T Consensus 391 er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s~~L~~-~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~ 468 (524)
T TIGR02348 391 KLRVEDALNATRAAVEEG-IVPGGGVALLRAAAALEG-LKGDNEDEAIGIDIVKRALEAPLRQIAENAGKDGAVVAEKVK 468 (524)
T ss_pred HHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHH-hccCChHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999999998 999999999999999998 778899999999999999999999999999999999999998
Q ss_pred HH
Q psy17073 209 QK 210 (219)
Q Consensus 209 ~~ 210 (219)
+.
T Consensus 469 ~~ 470 (524)
T TIGR02348 469 ES 470 (524)
T ss_pred hc
Confidence 65
No 34
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=7.9e-43 Score=321.74 Aligned_cols=210 Identities=42% Similarity=0.747 Sum_probs=194.9
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+||||||+|+|+++|++++.+++++|+||..|++||+.+++.+++.|++++++++..+ +.+.++++|++++|+.+
T Consensus 59 ~GDGtts~vlL~~~ll~~~~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~-----~~l~~i~~t~l~~k~~~ 133 (485)
T PF00118_consen 59 VGDGTTSVVLLACELLRNALKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDD-----ESLLNIAKTSLNSKISS 133 (485)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTS-----HHHHHHHHHHHTTSCGG
T ss_pred hccccceeeecccchhhhhhhhhhccccccchhhhhhhhhhhhhhhhhhhhccccccc-----hhhhhhhcccccccccc
Confidence 6999999999999999999999999999999999999999999999999999877421 78999999999999999
Q ss_pred hhhchhHHHHHHHH------Hhhccc------------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAV------MSLDDL------------------------------------------------------ 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av------~~v~~~------------------------------------------------------ 100 (219)
.+.+.|++++++|+ ..++.+
T Consensus 134 ~~~~~l~~li~~a~~~~~~~~~~~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~~~~~~~~~Ill~~~~L~~~~~~~~ 213 (485)
T PF00118_consen 134 SWSDHLSKLIVDAIKSIKSNFDLDNIKIIKIPGGSISDSELINGIVLDKGFSSPNMPKKIENPKILLLNCPLEYSKSFKS 213 (485)
T ss_dssp GCHHHHHHHHHHHHHHHTTTHHGGGEEEEEEESSSSGGEEEESEEEESSSBSSTTSBSEEESEEEEEESSEBSSCCHSTE
T ss_pred cchhhhhhhHHHHHHhhcccccccchhhhhhccccccccccccceeeeccccccccccccccceEEeeeccccccccccc
Confidence 99999999999999 322100
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 214 ~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~ 293 (485)
T PF00118_consen 214 EIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISS 293 (485)
T ss_dssp EEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSS
T ss_pred ccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEecc
Confidence
Q ss_pred ------------------------eeEEe--cccCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccccccH
Q psy17073 101 ------------------------FNVFS--GCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGA 154 (219)
Q Consensus 101 ------------------------~~~~~--~~~~~~~~tI~irg~t~~~l~E~er~i~dal~v~~~~~~~~~~v~GGG~ 154 (219)
|++|+ +|..++.+||+|||||+.+++|.||+++||+++++++++++++|||||+
T Consensus 294 ~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~ 373 (485)
T PF00118_consen 294 LDDLSDEDLGFCKSVEEREIGNKKYIFIEGIGCLSSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGA 373 (485)
T ss_dssp CGGSTGGGSEEEEEEEEEEETSSEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTH
T ss_pred cccccchhhhhhhhhhhcccccccccccccccccccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcc
Confidence 77787 5788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy17073 155 IEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGR 215 (219)
Q Consensus 155 ~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~ 215 (219)
+|++|+..|++++.+.++++++++++|++||+.||++|++|||+|+.+++++|+..|++++
T Consensus 374 ~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~~ 434 (485)
T PF00118_consen 374 TELHLSKALRKYAKSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNGN 434 (485)
T ss_dssp HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHSTT
T ss_pred hhhhhhhhHHHhhhcccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999997754
No 35
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=4e-43 Score=328.13 Aligned_cols=197 Identities=25% Similarity=0.408 Sum_probs=179.3
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+||||||+||||++||++|++|+++|+||..|++||+.|.+.+++.|++++.+++ + .+.|.++|+++++
T Consensus 84 ~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~--d----~~~L~~VA~ts~~----- 152 (529)
T CHL00093 84 AGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVE--D----IQAITQVASISAG----- 152 (529)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC--C----HHHHHHHHHHhcc-----
Confidence 6999999999999999999999999999999999999999999999999999875 4 5679999999865
Q ss_pred hhhchhHHHHHHHHHhhcc---c---------------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD---L--------------------------------------------------------- 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~---~--------------------------------------------------------- 100 (219)
+++.|++|+++|+.++++ +
T Consensus 153 -~~~~l~~lv~eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~~ 231 (529)
T CHL00093 153 -NDEEVGSMIADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQ 231 (529)
T ss_pred -ChHHHHHHHHHHHHHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchHH
Confidence 589999999999998831 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 232 ~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~ 311 (529)
T CHL00093 232 DLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLET 311 (529)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCC
Confidence
Q ss_pred ------------------eeEEec---------ccC-------------------------CceEEEEecCCCHHHHHHH
Q psy17073 101 ------------------FNVFSG---------CKN-------------------------ARTCTIIVRGGAEQFLEET 128 (219)
Q Consensus 101 ------------------~~~~~~---------~~~-------------------------~~~~tI~irg~t~~~l~E~ 128 (219)
+++|++ |+. +..+||+|||+|+.+++|+
T Consensus 312 ~~~~~LG~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~ 391 (529)
T CHL00093 312 IQLDLLGQARRIIVTKDSTTIIADGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDK 391 (529)
T ss_pred CCHHHCCcceEEEEecCEEEEEecCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHH
Confidence 455653 221 1488899999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCcccccccHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy17073 129 ERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSR-SIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKL 207 (219)
Q Consensus 129 er~i~dal~v~~~~~~~~~~v~GGG~~e~~l~~~l~~~~~-~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l 207 (219)
||+++||++++++++++| +|||||++|+++|..|++++. ..++++|+++++|++||+.||++||+|||+|+.+++.++
T Consensus 392 er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~g~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l 470 (529)
T CHL00093 392 KLRLEDAINATKAAVEEG-IVPGGGATLVHLSENLKTWAKNNLKEDELIGALIVARAILAPLKRIAENAGKNGSVIIEKV 470 (529)
T ss_pred HHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999999999998 999999999999999999987 789999999999999999999999999999999999999
Q ss_pred HHH
Q psy17073 208 RQK 210 (219)
Q Consensus 208 ~~~ 210 (219)
+..
T Consensus 471 ~~~ 473 (529)
T CHL00093 471 QEQ 473 (529)
T ss_pred Hcc
Confidence 764
No 36
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=5.6e-43 Score=327.93 Aligned_cols=197 Identities=22% Similarity=0.350 Sum_probs=180.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+||||||+||||++||+++.+++++|+||..|++||++|++.++++|++++++++ + .+++.++|+++.++
T Consensus 85 ~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~--~----~~~l~~va~~s~~~---- 154 (546)
T PRK14104 85 AGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVT--S----NDEIAQVGTISANG---- 154 (546)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCC--C----HHHHHHHHHHHhcC----
Confidence 6999999999999999999999999999999999999999999999999999985 2 35689999988665
Q ss_pred hhhchhHHHHHHHHHhhcc---c---------------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD---L--------------------------------------------------------- 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~---~--------------------------------------------------------- 100 (219)
++.+++++++|+.++++ +
T Consensus 155 --d~~i~~lv~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~ 232 (546)
T PRK14104 155 --DAEIGKFLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNE 232 (546)
T ss_pred --chHHHHHHHHHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcCHHH
Confidence 57799999999998831 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 233 i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~ 312 (546)
T PRK14104 233 LLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENV 312 (546)
T ss_pred HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcC
Confidence
Q ss_pred -----------------eeEEecccCC-----------------------------------ceEEEEecCCCHHHHHHH
Q psy17073 101 -----------------FNVFSGCKNA-----------------------------------RTCTIIVRGGAEQFLEET 128 (219)
Q Consensus 101 -----------------~~~~~~~~~~-----------------------------------~~~tI~irg~t~~~l~E~ 128 (219)
+++|++|.++ +++||+|||+|+++++|+
T Consensus 313 ~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~ 392 (546)
T PRK14104 313 TLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKER 392 (546)
T ss_pred CHHHCCceeEEEEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHH
Confidence 5777787764 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCcccccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy17073 129 ERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLR 208 (219)
Q Consensus 129 er~i~dal~v~~~~~~~~~~v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~ 208 (219)
||+++||++++++++++| +|||||++|++++..|+++. ..++++++++++|++||+.||++||+|+|+|+.+++.+|+
T Consensus 393 ~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~s~~L~~~~-~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~ 470 (546)
T PRK14104 393 KDRVDDAMHATRAAVEEG-IVPGGGVALLRASEQLKGIK-TKNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKIL 470 (546)
T ss_pred HHHHHHHHHHHHHHHHcC-cCcCchHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999999998 99999999999999999884 4688999999999999999999999999999999999998
Q ss_pred HHH
Q psy17073 209 QKH 211 (219)
Q Consensus 209 ~~h 211 (219)
+.|
T Consensus 471 ~~~ 473 (546)
T PRK14104 471 EKE 473 (546)
T ss_pred hcC
Confidence 755
No 37
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=5.6e-41 Score=316.79 Aligned_cols=197 Identities=19% Similarity=0.319 Sum_probs=171.4
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+||||||+||||++||+++++++++|+||..|++||+.|.+.++++|++++.+++ .+.|.++|++++++
T Consensus 140 vGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~-------d~~L~~vA~tS~~~---- 208 (600)
T PLN03167 140 AGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVE-------DSELADVAAVSAGN---- 208 (600)
T ss_pred hCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC-------HHHHHHHHHHhccC----
Confidence 6999999999999999999999999999999999999999999999999998874 24599999999763
Q ss_pred hhhchhHHHHHHHHHhhcc---c---------------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD---L--------------------------------------------------------- 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~---~--------------------------------------------------------- 100 (219)
++.|++|+++|+.++++ +
T Consensus 209 --~~~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~ 286 (600)
T PLN03167 209 --NYEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARD 286 (600)
T ss_pred --cHHHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHH
Confidence 67899999999999831 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 287 l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~ 366 (600)
T PLN03167 287 LIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKV 366 (600)
T ss_pred HHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccC
Confidence
Q ss_pred ---------e--------eEE----------------eccc------------------CCceEEEE-ecCCCHHHHHHH
Q psy17073 101 ---------F--------NVF----------------SGCK------------------NARTCTII-VRGGAEQFLEET 128 (219)
Q Consensus 101 ---------~--------~~~----------------~~~~------------------~~~~~tI~-irg~t~~~l~E~ 128 (219)
. +.+ +++. .++.++|+ |||+|+.+++|+
T Consensus 367 ~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~ 446 (600)
T PLN03167 367 GKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEK 446 (600)
T ss_pred CHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHH
Confidence 0 001 1111 01245555 999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCcccccccHHHHHHHHHHHHHhcccchHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy17073 129 ERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSIAGKEQL-LIGAVAKAFEVIPRQLSDNAGFDATNILNKL 207 (219)
Q Consensus 129 er~i~dal~v~~~~~~~~~~v~GGG~~e~~l~~~l~~~~~~~~~~~~~-~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l 207 (219)
||+++|||+++|+++++| +|||||++|++++..|++++...++++|+ +++++++||+.||++||+|||+|+.+++.+|
T Consensus 447 er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L 525 (600)
T PLN03167 447 KLRVEDALNATKAAVEEG-IVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKV 525 (600)
T ss_pred HHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHH
Confidence 999999999999999999 99999999999999999998888888875 5999999999999999999999999999999
Q ss_pred HHHH
Q psy17073 208 RQKH 211 (219)
Q Consensus 208 ~~~h 211 (219)
++.+
T Consensus 526 ~~~~ 529 (600)
T PLN03167 526 LSND 529 (600)
T ss_pred HhcC
Confidence 7543
No 38
>KOG0360|consensus
Probab=100.00 E-value=3e-42 Score=307.12 Aligned_cols=208 Identities=40% Similarity=0.633 Sum_probs=192.1
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hcccccCCCchhhHHHHHHHHHHhhhhhcc
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDE-LAVKIQKSDSGEYRGLLEKCAATALSSKLI 79 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~-~s~~v~~~~~~~~~~~l~~va~tsl~sK~~ 79 (219)
+||||||||++|++||+++.+|+++++||+.|++||+.|+..+++++++ ++.+++..+ ++.|.++++|+++||++
T Consensus 89 vgDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg----~~~Lin~~ktsmsSK~i 164 (545)
T KOG0360|consen 89 VGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLG----TQILINLAKTSMSSKII 164 (545)
T ss_pred ccCCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcc----hHHHHHHHHhhhcceec
Confidence 6999999999999999999999999999999999999999999999965 678887777 78999999999999999
Q ss_pred hhhhchhHHHHHHHHHhhc--c-------------c--------------------------------------------
Q psy17073 80 HQQKGFFSKMVVDAVMSLD--D-------------L-------------------------------------------- 100 (219)
Q Consensus 80 ~~~~~~i~~l~~~Av~~v~--~-------------~-------------------------------------------- 100 (219)
....++|++++++|++.+. + +
T Consensus 165 ~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~m~~~i~~~Kiacld~~L 244 (545)
T KOG0360|consen 165 GMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRIKNAKIACLDFTL 244 (545)
T ss_pred ccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhccccccccceeeeEeccc
Confidence 9999999999999998862 0 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 245 qk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iak 324 (545)
T KOG0360|consen 245 QKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAK 324 (545)
T ss_pred ccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHH
Confidence
Q ss_pred ---------------------------------------eeEEecccCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Q psy17073 101 ---------------------------------------FNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRR 141 (219)
Q Consensus 101 ---------------------------------------~~~~~~~~~~~~~tI~irg~t~~~l~E~er~i~dal~v~~~ 141 (219)
+..+.+.+. .+|+|++||+|++.+||+||++|||||++|.
T Consensus 325 atGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka-~~aSiILrgaNd~~~DEmers~hdaL~Vlkr 403 (545)
T KOG0360|consen 325 ATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKA-TSASIILRGANDFMLDEMERSLHDALCVLKR 403 (545)
T ss_pred hhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCcc-ceeeEEEecCCcccHhhhccchhhHHHHHHH
Confidence 233334443 3899999999999999999999999999999
Q ss_pred HHHcCcccccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy17073 142 TIRNHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQ 213 (219)
Q Consensus 142 ~~~~~~~v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~ 213 (219)
.++++.+|||||++|.+|+-+|++|+.+...++|+++..|+.||..||++|+.|++.|+.|+++++|+.|+.
T Consensus 404 tLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~ 475 (545)
T KOG0360|consen 404 TLESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSV 475 (545)
T ss_pred HhccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999953
No 39
>KOG0357|consensus
Probab=100.00 E-value=3.7e-41 Score=289.99 Aligned_cols=212 Identities=32% Similarity=0.551 Sum_probs=178.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+|||||.+++|++.+++++.+++.+|+||..|..||+.+...++++|++++.+.. +++++.++=.+-.+==++.
T Consensus 89 IgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e------f~emi~~vK~~ga~l~icq 162 (400)
T KOG0357|consen 89 IGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE------FEEMIQQIKETGANLAICQ 162 (400)
T ss_pred hccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc------HHHHHHHHHhhCCcEEEEe
Confidence 6999999999999999999999999999999999999999999999999887654 3566666655442221222
Q ss_pred h-hhchhHHHHHH----HHHhhc------------------------------------------cceeEEecccCCceE
Q psy17073 81 Q-QKGFFSKMVVD----AVMSLD------------------------------------------DLFNVFSGCKNARTC 113 (219)
Q Consensus 81 ~-~~~~i~~l~~~----Av~~v~------------------------------------------~~~~~~~~~~~~~~~ 113 (219)
+ .+|+--.+..+ |++-|+ |-+..+++|+++++.
T Consensus 163 wgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~nskaV 242 (400)
T KOG0357|consen 163 WGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNSKAV 242 (400)
T ss_pred cccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccHhhhCHhhccccceEEEEecccccceEEEEEecCCCceE
Confidence 1 23322222211 121121 017789999999999
Q ss_pred EEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Q psy17073 114 TIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLS 193 (219)
Q Consensus 114 tI~irg~t~~~l~E~er~i~dal~v~~~~~~~~~~v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~ 193 (219)
||.+||.|+.+++|.+|++||||||+||.++|.|+|||||+.|+.+|-.+.+.+..+++.+||++.+|++||++||..||
T Consensus 243 TifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmala 322 (400)
T KOG0357|consen 243 TIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALA 322 (400)
T ss_pred EEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCC
Q psy17073 194 DNAGFDATNILNKLRQKHAQGRLKI 218 (219)
Q Consensus 194 ~NaG~d~~~~~~~l~~~h~~~~~~~ 218 (219)
+|+|++|++.+++++++|.+.+.+-
T Consensus 323 ensgl~pi~~ls~~ka~q~~~~~~~ 347 (400)
T KOG0357|consen 323 ENSGLDPIETLSDVKARQVKEMNPA 347 (400)
T ss_pred hccCCCchhhhhHhHHHHHHhcCcc
Confidence 9999999999999999987665553
No 40
>KOG0359|consensus
Probab=100.00 E-value=2e-40 Score=292.98 Aligned_cols=207 Identities=33% Similarity=0.615 Sum_probs=196.7
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
.||||||+|+|+|+++++|..++..|+||..|..||+.|.+.++++|+..+.+++ ++.|..+++|+++||...
T Consensus 87 tGDGttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~-------~~~L~~va~tsl~Tkv~~ 159 (520)
T KOG0359|consen 87 TGDGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVD-------RETLKDVARTSLRTKVHA 159 (520)
T ss_pred cCCCcceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchh-------HHHHHHHHHHhhcCcccH
Confidence 4999999999999999999999999999999999999999999999997777665 789999999999999999
Q ss_pred hhhchhHHHHHHHHHhhc------cc------------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLD------DL------------------------------------------------------ 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~------~~------------------------------------------------------ 100 (219)
.-.+.+++++++|+..+. |+
T Consensus 160 ~la~~lt~~vv~aVl~i~~~~~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpdmp~~~e~a~iL~~NvSLEYEK~ 239 (520)
T KOG0359|consen 160 ELADVLTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDMPRRVEDAYILICNVSLEYEKP 239 (520)
T ss_pred HHHhHhHHHHHhhheeeccCCCCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCcccccchhceEEEEeecccccccc
Confidence 999999999999998873 11
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 240 EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmERL~la 319 (520)
T KOG0359|consen 240 EINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMERLVLA 319 (520)
T ss_pred ccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHHHHHh
Confidence
Q ss_pred --------------------------------eeEEecccCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcc
Q psy17073 101 --------------------------------FNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAV 148 (219)
Q Consensus 101 --------------------------------~~~~~~~~~~~~~tI~irg~t~~~l~E~er~i~dal~v~~~~~~~~~~ 148 (219)
|+|+++|++|++|||+|+|||++.+.+++++++|+|++++++++|+.+
T Consensus 320 cGG~a~nsvddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~ 399 (520)
T KOG0359|consen 320 CGGEAVNSVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNPSSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCG 399 (520)
T ss_pred hccceecccccCChhhccccceeEEeeccceeeEeeecCCCCcceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhccc
Confidence 999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy17073 149 VAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQG 214 (219)
Q Consensus 149 v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~ 214 (219)
+||+|++|.+++.+|+...++.+++.++++++|++||..+|++|++|+|+|+.+.+.+|...|..+
T Consensus 400 i~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~ 465 (520)
T KOG0359|consen 400 IPGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVT 465 (520)
T ss_pred ccCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhh
Confidence 999999999999999988889999999999999999999999999999999999999999988654
No 41
>KOG0362|consensus
Probab=100.00 E-value=8.5e-37 Score=273.58 Aligned_cols=209 Identities=30% Similarity=0.517 Sum_probs=185.1
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+||||++||+|+++||++|++||+.|++|..|++||+.|...+++.|+++...- ..+.++ .+ .+++++++||...
T Consensus 96 iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~-~~d~~d-~~---~~~rs~i~skq~~ 170 (537)
T KOG0362|consen 96 IGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQS-IGDLED-KE---WALRSVIMSKQYG 170 (537)
T ss_pred hCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHh-cccccC-hH---HHHHHHHHHhhcc
Confidence 599999999999999999999999999999999999999999999999985442 122111 22 6788999999875
Q ss_pred hhhchhHHHHHHHHHhhcc--------c----------------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD--------L---------------------------------------------------- 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~--------~---------------------------------------------------- 100 (219)
..+++++++++|+.++.. +
T Consensus 171 -~ed~l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~eG~v~~ak~arvAvf~cP~d~~~TEtk 249 (537)
T KOG0362|consen 171 -NEDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLEDSCVVCGMVFKRDPEGEVKSAKDARVAVFACPFDIAQTETK 249 (537)
T ss_pred -hHHHHHHHHHHHHHhhcccccccccceEEEEEecCCcccceeeEEEEeccccCCcccccccceeEEEecCCCcccccCc
Confidence 578899999999987620 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 250 gTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk~eLrrlcrtvGA~~l~ 329 (537)
T KOG0362|consen 250 GTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSKFDLRRLCRTVGATALP 329 (537)
T ss_pred ceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccHhhHHHHHHHcCCccch
Confidence
Q ss_pred -------------------------eeEE-ecccCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccccccH
Q psy17073 101 -------------------------FNVF-SGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGA 154 (219)
Q Consensus 101 -------------------------~~~~-~~~~~~~~~tI~irg~t~~~l~E~er~i~dal~v~~~~~~~~~~v~GGG~ 154 (219)
++.| .++..+++.||+|||+|+..+|+.||.+.|+++..+...++++++||+|+
T Consensus 330 rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGaga 409 (537)
T KOG0362|consen 330 RLFPPAPEELGYCDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGA 409 (537)
T ss_pred hccCCCCccccccceeeeeecCCceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCch
Confidence 3333 34456789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy17073 155 IEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGR 215 (219)
Q Consensus 155 ~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~ 215 (219)
+|++|+.+|.++....+|.+|++++.|++||+.+||+|++|+|+++.+++.+|...|+.|+
T Consensus 410 tEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~~g~ 470 (537)
T KOG0362|consen 410 TEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQGGK 470 (537)
T ss_pred hHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999543
No 42
>KOG0356|consensus
Probab=99.95 E-value=8.3e-27 Score=211.86 Aligned_cols=196 Identities=20% Similarity=0.321 Sum_probs=174.2
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcch
Q psy17073 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIH 80 (219)
Q Consensus 1 vGDGTTsvvvLa~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 80 (219)
+|||||++++|+.++..++.+-+.+|.+|..|.+|++.+.+.+.+.|+++++++++ .+++.++|.++.++
T Consensus 98 agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt------~eeIaqVAtiSAng---- 167 (550)
T KOG0356|consen 98 AGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTT------PEEIAQVATISANG---- 167 (550)
T ss_pred cccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCC------HHHHHHHHhhhcCC----
Confidence 59999999999999999999999999999999999999999999999999999985 57899999988664
Q ss_pred hhhchhHHHHHHHHHhhcc---------------c---------------------------------------------
Q psy17073 81 QQKGFFSKMVVDAVMSLDD---------------L--------------------------------------------- 100 (219)
Q Consensus 81 ~~~~~i~~l~~~Av~~v~~---------------~--------------------------------------------- 100 (219)
|.++++++.+|+++++. +
T Consensus 168 --D~~ig~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v~~ 245 (550)
T KOG0356|consen 168 --DKEIGNLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQS 245 (550)
T ss_pred --cHHHHHHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhhhHHHH
Confidence 89999999999999841 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17073 101 -------------------------------------------------------------------------------- 100 (219)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (219)
T Consensus 246 ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~ 325 (550)
T KOG0356|consen 246 IVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNLED 325 (550)
T ss_pred HhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhccccc
Confidence
Q ss_pred ------------------eeEEec-----------------------------c------cCCceEEEEecCCCHHHHHH
Q psy17073 101 ------------------FNVFSG-----------------------------C------KNARTCTIIVRGGAEQFLEE 127 (219)
Q Consensus 101 ------------------~~~~~~-----------------------------~------~~~~~~tI~irg~t~~~l~E 127 (219)
...+.+ . -.+++++|.++|.|+.+++|
T Consensus 326 ~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev~e 405 (550)
T KOG0356|consen 326 AKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEVEVNE 405 (550)
T ss_pred CchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcchhhhhh
Confidence 011110 0 13689999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCcccccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy17073 128 TERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKL 207 (219)
Q Consensus 128 ~er~i~dal~v~~~~~~~~~~v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l 207 (219)
++.+++|||++++.++++| +|||||++.++++..|.+....-+..++.+++++.+||..|..++++|+|.|+..++.++
T Consensus 406 kk~rv~dalnat~aaveeG-ivpGGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv 484 (550)
T KOG0356|consen 406 KKDRVEDALNATRAAVEEG-IVPGGGTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKV 484 (550)
T ss_pred hhhhHHHHHHHHHHHhhcC-cccCCchHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHH
Confidence 9999999999999999999 999999999999999998765445567788999999999999999999999999999998
Q ss_pred HH
Q psy17073 208 RQ 209 (219)
Q Consensus 208 ~~ 209 (219)
+.
T Consensus 485 ~~ 486 (550)
T KOG0356|consen 485 LN 486 (550)
T ss_pred Hh
Confidence 84
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.40 E-value=1.6e-12 Score=108.14 Aligned_cols=45 Identities=40% Similarity=0.745 Sum_probs=42.1
Q ss_pred eeEEecccCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q psy17073 101 FNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRN 145 (219)
Q Consensus 101 ~~~~~~~~~~~~~tI~irg~t~~~l~E~er~i~dal~v~~~~~~~ 145 (219)
|+||++|+.+..|||+|||||+.+++|+||+++||++++++++++
T Consensus 165 ~~~~~~~~~~~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 165 LTFIEGCKGGKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred EEEEEcCCCCCEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 578888988999999999999999999999999999999999864
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=98.81 E-value=7.1e-09 Score=89.44 Aligned_cols=104 Identities=15% Similarity=0.326 Sum_probs=69.4
Q ss_pred HHHHHHHHhhcccc-cCCCchhhHHHHHHHHHHhhhhhcchhhhchhHHH-H--HHHHH--hhcc------ceeEEeccc
Q psy17073 41 SMALQKIDELAVKI-QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKM-V--VDAVM--SLDD------LFNVFSGCK 108 (219)
Q Consensus 41 ~~~l~~L~~~s~~v-~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~i~~l-~--~~Av~--~v~~------~~~~~~~~~ 108 (219)
+.++++|.+..+.+ ...+ ++++.++++.+ ++++++...+.+.+- + .+.++ .+++ -|+||++|+
T Consensus 142 ~~a~~~l~k~gI~~v~~v~----~~dl~rIa~~t-Ga~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~ 216 (261)
T cd03334 142 RIAQDLLLEAGITLVLNVK----PSVLERISRCT-GADIISSMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCP 216 (261)
T ss_pred HHHHHHHHHCCCEEEEecC----HHHHHHHHHHh-CCEEecChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCC
Confidence 34556665543222 2223 56788888766 666665422111110 0 11111 1121 489999999
Q ss_pred CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCccc
Q psy17073 109 NARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVV 149 (219)
Q Consensus 109 ~~~~~tI~irg~t~~~l~E~er~i~dal~v~~~~~~~~~~v 149 (219)
.+++|||+|||||+++++|+||+++||+++++++..+..++
T Consensus 217 ~~~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~~~~ 257 (261)
T cd03334 217 KELGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLETSFL 257 (261)
T ss_pred CCceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999998887543
No 45
>KOG0230|consensus
Probab=80.02 E-value=2 Score=45.18 Aligned_cols=51 Identities=20% Similarity=0.415 Sum_probs=41.8
Q ss_pred eeEEecccCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCccccc
Q psy17073 101 FNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAG 151 (219)
Q Consensus 101 ~~~~~~~~~~~~~tI~irg~t~~~l~E~er~i~dal~v~~~~~~~~~~v~G 151 (219)
+.||++|+.+..|||++||....++.++++-+.-++-++-...-+-.++.-
T Consensus 522 lmffegc~~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaD 572 (1598)
T KOG0230|consen 522 LMFFEGCPKPLGCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLAD 572 (1598)
T ss_pred hHHhhcCCCCCCceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 578999999999999999999999999999998888777665444334433
No 46
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=55.69 E-value=20 Score=28.57 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q psy17073 176 LLIGAVAKAFEVIPRQLSDNAGFDATNI 203 (219)
Q Consensus 176 ~~~~~~a~al~~ip~~L~~NaG~d~~~~ 203 (219)
..++++.+.|+.+|-+|.++||+.|..+
T Consensus 101 ~~~Kav~q~LetlPD~LERd~gL~p~~v 128 (152)
T PF07278_consen 101 EMAKAVVQVLETLPDILERDAGLPPEQV 128 (152)
T ss_pred HHHHHHHHHHHHhhHHHHhcCCCCHHHH
Confidence 4578999999999999999999998754
No 47
>KOG1593|consensus
Probab=49.59 E-value=30 Score=30.29 Aligned_cols=60 Identities=18% Similarity=0.312 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHc--CcccccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy17073 129 ERSLHDAIMIVRRTIRN--HAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFD 199 (219)
Q Consensus 129 er~i~dal~v~~~~~~~--~~~v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d 199 (219)
-|+|+||+++++..++- -.++.|-|+++++-+.-+.+ .+++..+ +-+..-.|.++||-=|
T Consensus 105 lrrIkdai~vA~~Vleht~HTlLvGe~At~FA~smGf~~--e~Lst~e---------s~~~~s~W~~~nCQPN 166 (349)
T KOG1593|consen 105 LRRIKDAIRVARHVLEHTQHTLLVGESATAFANSMGFKE--EDLSTEE---------SKSWWSDWKAENCQPN 166 (349)
T ss_pred HHHHHHHHHHHHHHHhhhheeeeecccHHHHHHhcCCCc--cccCCHH---------HHHHHHHHHHhcCCcc
Confidence 48899999999999984 45899999999888776654 2333333 3344556888888644
No 48
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=47.86 E-value=14 Score=34.77 Aligned_cols=39 Identities=33% Similarity=0.611 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHcCcccccccHHHHHHHHHHHHHhc
Q psy17073 129 ERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSR 168 (219)
Q Consensus 129 er~i~dal~v~~~~~~~~~~v~GGG~~e~~l~~~l~~~~~ 168 (219)
+|.+.||+..+|++ +.|-+|.|||+-+-.....|..++.
T Consensus 216 ~~eL~~A~~lik~a-k~PlIvaGGGv~YS~A~~~L~af~E 254 (617)
T COG3962 216 ERELADAAALIKSA-KKPLIVAGGGVLYSGAREALRAFAE 254 (617)
T ss_pred HHHHHHHHHHHHhc-CCCEEEecCceeechHHHHHHHHHH
Confidence 46788899988876 6677999999988888888877754
No 49
>KOG2663|consensus
Probab=40.31 E-value=31 Score=29.95 Aligned_cols=29 Identities=21% Similarity=0.491 Sum_probs=25.3
Q ss_pred ceEEEEecCCCHHHHHHHHHHHHHHHHHHH
Q psy17073 111 RTCTIIVRGGAEQFLEETERSLHDAIMIVR 140 (219)
Q Consensus 111 ~~~tI~irg~t~~~l~E~er~i~dal~v~~ 140 (219)
.-.||+++| ++.++++..|.|+|-.+|.+
T Consensus 119 srmTIVl~G-td~VveQa~rQiedlVnV~a 147 (309)
T KOG2663|consen 119 SRMTIVLQG-TDGVVEQARRQIEDLVNVYA 147 (309)
T ss_pred hhceEEEec-cHHHHHHHHHHHHHhhhhhe
Confidence 345999999 67899999999999999875
No 50
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=39.56 E-value=47 Score=21.17 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=12.3
Q ss_pred HHHHHHHHHHcCCCHHHHHH
Q psy17073 15 ILKQVKPYVEEGVHPRIVIK 34 (219)
Q Consensus 15 ll~~a~~li~~gihP~~Ii~ 34 (219)
-|+-+.+|+++|+||..+..
T Consensus 23 tL~ici~L~e~GVnPeaLA~ 42 (48)
T PF12554_consen 23 TLSICIELCENGVNPEALAA 42 (48)
T ss_pred HHHHHHHHHHCCCCHHHHHH
Confidence 34555667777777765543
No 51
>PRK04027 30S ribosomal protein S7P; Reviewed
Probab=37.89 E-value=88 Score=25.95 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=27.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Q psy17073 171 AGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNK 206 (219)
Q Consensus 171 ~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~ 206 (219)
.|+.+.+++++.+||+.|-. -.|.||++++.+
T Consensus 74 ~GKK~~A~~Iv~~AfeiI~~----kT~~nPiqVl~~ 105 (195)
T PRK04027 74 TGKKQKAYNIVKEAFEIIEK----RTKQNPIQVLVD 105 (195)
T ss_pred CCcHHHHHHHHHHHHHHHHH----HHCCCHHHHHHH
Confidence 58999999999999987743 458899999876
No 52
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.
Probab=37.11 E-value=29 Score=31.44 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC-cccccccHHHHHHH
Q psy17073 122 EQFLEETERSLHDAIMIVRRTIRNH-AVVAGGGAIEMELS 160 (219)
Q Consensus 122 ~~~l~E~er~i~dal~v~~~~~~~~-~~v~GGG~~e~~l~ 160 (219)
..+-.|+++.|+.-..++-|+..+| .+|.|.|++.+.-+
T Consensus 42 ~f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~A 81 (363)
T PF04864_consen 42 WFISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNA 81 (363)
T ss_dssp TTS-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHH
T ss_pred eeccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHH
Confidence 5778899999999999999998876 48999999875543
No 53
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=36.88 E-value=2.5e+02 Score=23.35 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccccccHHHHHHHHHHHHHhcccchH--HHHHHHHHHHHHHHHH---HHHHHhc
Q psy17073 122 EQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSIAGK--EQLLIGAVAKAFEVIP---RQLSDNA 196 (219)
Q Consensus 122 ~~~l~E~er~i~dal~v~~~~~~~~~~v~GGG~~e~~l~~~l~~~~~~~~~~--~~~~~~~~a~al~~ip---~~L~~Na 196 (219)
+..++|++..+..-++..+..+..|+-.. .+...-+..|+++.....+. -.-++..|+++|..+- +.|.+|+
T Consensus 8 E~~~~~le~~l~kl~K~~k~~~~agk~~~---~a~~~F~~~L~~f~~~~~~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~ 84 (200)
T cd07639 8 EAEVSELETRLEKLVKLGSGMLEGGRHYC---AASRAFVDGLCDLAHHGPKDPMMAECLEKFSDGLNHILDSHAELLEAT 84 (200)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666655555443211 23444455566665423332 3456888888888873 4577775
Q ss_pred CCCHHHHHHHH
Q psy17073 197 GFDATNILNKL 207 (219)
Q Consensus 197 G~d~~~~~~~l 207 (219)
-....+-+..+
T Consensus 85 ~~~l~~~L~~F 95 (200)
T cd07639 85 QFSFKQQLQLL 95 (200)
T ss_pred HHHHHHHHHHH
Confidence 54444444433
No 54
>PTZ00091 40S ribosomal protein S5; Provisional
Probab=34.77 E-value=67 Score=26.61 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=27.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Q psy17073 171 AGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNK 206 (219)
Q Consensus 171 ~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~ 206 (219)
+|+.+.+++++.+||+.|-. ..|.||++++.+
T Consensus 72 ~GKK~~A~~IV~~AfeiI~~----~t~~nPiqVl~~ 103 (193)
T PTZ00091 72 NGKKLLAVRIVKHAFEIIHL----LTDKNPLQVLVD 103 (193)
T ss_pred CCcHHHHHHHHHHHHHHHHH----HHCCChHHHHHH
Confidence 48999999999999998844 357899999876
No 55
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=34.10 E-value=65 Score=26.71 Aligned_cols=11 Identities=36% Similarity=0.709 Sum_probs=8.7
Q ss_pred CcccccccHHH
Q psy17073 146 HAVVAGGGAIE 156 (219)
Q Consensus 146 ~~~v~GGG~~e 156 (219)
-.+|||||.+-
T Consensus 29 i~iVpGGg~FA 39 (212)
T COG2054 29 ILIVPGGGIFA 39 (212)
T ss_pred EEEecCchHHH
Confidence 35899999864
No 56
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=31.43 E-value=1.6e+02 Score=19.53 Aligned_cols=53 Identities=11% Similarity=0.123 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh-cccccCCCchhhHHHHHHHHHHhhh
Q psy17073 13 GEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDEL-AVKIQKSDSGEYRGLLEKCAATALS 75 (219)
Q Consensus 13 ~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~-s~~v~~~~~~~~~~~l~~va~tsl~ 75 (219)
+.|++.+-.+...++++.. .+...+...+..+++. ..|+ + .+++..++++..+
T Consensus 14 ~~lf~~a~~~~~~~v~~~~---~~~~~v~~~~~~~N~~~~~PL---~----~~Ev~~i~kSi~k 67 (71)
T PF08708_consen 14 CTLFRLARRLAYRGVDQEE---QFRQEVLSLAQAINSNFSPPL---P----ESEVKAIAKSIAK 67 (71)
T ss_pred HHHHHHHHHHHHhCCCHhH---HHHHHHHHHHHHHHHHcCCCC---C----HHHHHHHHHHHHH
Confidence 3566777777778888887 5555444455555544 3332 3 5778889888743
No 57
>TIGR01028 S7_S5_E_A ribosomal protein S7(archaeal)/S5(eukaryotic). This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein S7 of bacteria and S5 of eukaryotes. A separate model describes bacterial and organellar S7.
Probab=30.99 E-value=85 Score=25.82 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=26.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Q psy17073 171 AGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNK 206 (219)
Q Consensus 171 ~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~ 206 (219)
+|+.+.+.+++.+||+.|-+ ..|.||++++.+
T Consensus 65 ~GKK~~A~kIv~~A~~iI~~----~t~~nPi~vl~~ 96 (186)
T TIGR01028 65 NGKKLKAYRIVKEAFEIIEK----RTGENPIQVLVD 96 (186)
T ss_pred CCcHHHHHHHHHHHHHHHHH----HhCCChHHHHHH
Confidence 58999999999999998744 458899999876
No 58
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=30.68 E-value=63 Score=19.68 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=21.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Q psy17073 16 LKQVKPYVEEGVHPRIVIKAVRKATSMALQKID 48 (219)
Q Consensus 16 l~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~ 48 (219)
.+++.+|+++|+....|.+-+..+..-+..+|+
T Consensus 11 ~~~i~~l~~~G~si~~IA~~~gvsr~TvyR~l~ 43 (45)
T PF02796_consen 11 IEEIKELYAEGMSIAEIAKQFGVSRSTVYRYLN 43 (45)
T ss_dssp HHHHHHHHHTT--HHHHHHHTTS-HHHHHHHHC
T ss_pred HHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 466778888887777887777666666655554
No 59
>COG4953 PbpC Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]
Probab=30.64 E-value=71 Score=31.53 Aligned_cols=47 Identities=23% Similarity=0.452 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCcccccccHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q psy17073 136 IMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVA 182 (219)
Q Consensus 136 l~v~~~~~~~~~~v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a 182 (219)
++++.+.+..|+++.||...-|++++.|.-...++.+|-+-..+++.
T Consensus 94 ~RA~~q~~~~G~vvsGgSTlTMQvARlleP~~Rtl~gK~~qi~rAiq 140 (733)
T COG4953 94 LRAAWQTLTSGRVVSGGSTLTMQVARLLEPRPRTLGGKIRQIWRAIQ 140 (733)
T ss_pred HHHHHHHHhcCccccCcchHHHHHHHHhCcCCCChHHHHHHHHHHHH
Confidence 34555667789999999999999999998777777776655554443
No 60
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=30.32 E-value=1.4e+02 Score=20.96 Aligned_cols=30 Identities=30% Similarity=0.451 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHcC-CCHHHHHHHHHHHH
Q psy17073 11 LAGEILKQVKPYVEEG-VHPRIVIKAVRKAT 40 (219)
Q Consensus 11 La~~ll~~a~~li~~g-ihP~~Ii~g~~~a~ 40 (219)
+-..++.++..++++| ..|..|=++++..+
T Consensus 7 l~~~~~~ea~~l~~egvas~~~ID~~~~~~~ 37 (97)
T PF00725_consen 7 LLAALLNEAARLVEEGVASPEDIDRAMRYGL 37 (97)
T ss_dssp HHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3467889999999999 78888877666643
No 61
>COG4577 CcmK Carbon dioxide concentrating mechanism/carboxysome shell protein [Secondary metabolites biosynthesis, transport, and catabolism / Energy production and conversion]
Probab=29.12 E-value=2.2e+02 Score=22.66 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=29.8
Q ss_pred HHHHHHhhccceeEEecccCCceEEEEecCCCHHHHHHHHHHHHHHHHHH
Q psy17073 90 VVDAVMSLDDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIV 139 (219)
Q Consensus 90 ~~~Av~~v~~~~~~~~~~~~~~~~tI~irg~t~~~l~E~er~i~dal~v~ 139 (219)
++|||.+..++..+-...-.++.+|+.|||.. .+.+.++..+...+
T Consensus 19 aADaMlKaanVtLv~~e~~~~G~~tv~v~GdV----~aV~aA~eaG~~aa 64 (150)
T COG4577 19 AADAMLKAANVTLVGYEKIGSGRFTVMVRGDV----AAVKAAVEAGAAAA 64 (150)
T ss_pred HHHHHHHhcceEEEEEEEcCCceEEEEEeccH----HHHHHHHHHHHHHH
Confidence 46777666654222222224588999999964 56777777777766
No 62
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=28.30 E-value=68 Score=30.52 Aligned_cols=48 Identities=33% Similarity=0.493 Sum_probs=35.5
Q ss_pred CChhhHHHHHH------HHHHHHHH-HHHcC-CCHHHHHHHHHHHHHHHHHHHHhh
Q psy17073 3 DGTTSVVLLAG------EILKQVKP-YVEEG-VHPRIVIKAVRKATSMALQKIDEL 50 (219)
Q Consensus 3 DGTTsvvvLa~------~ll~~a~~-li~~g-ihP~~Ii~g~~~a~~~~l~~L~~~ 50 (219)
|-|-.+|+|.| ++-+.++. |+..| +||..|=+-+..+.+..-+.+.+.
T Consensus 241 ddtp~~v~ls~fdp~rreia~~~l~~li~dgrihp~riee~~~~~~~~~~~~i~~~ 296 (514)
T TIGR03319 241 DDTPEAVILSGFDPVRREIARMALEKLIQDGRIHPARIEEMVEKATKEVDNAIREE 296 (514)
T ss_pred cCCCCeEEecCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777776 66666654 56666 999999999999888877777653
No 63
>PF07141 Phage_term_sma: Putative bacteriophage terminase small subunit; InterPro: IPR010789 This entry is represented by Bacteriophage 712, Gp1; it is a family of uncharacterised viral proteins. This family consists of several putative Lactococcus bacteriophage terminase small subunit proteins. The exact function of this family is unknown.
Probab=27.19 E-value=2.2e+02 Score=22.28 Aligned_cols=34 Identities=6% Similarity=0.138 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy17073 12 AGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQ 45 (219)
Q Consensus 12 a~~ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~ 45 (219)
.--|+++-..+|+.|-+...|+..+....+-..+
T Consensus 17 tE~Lve~II~~IE~dt~~sEIc~~L~isrKtFye 50 (174)
T PF07141_consen 17 TEPLVEQIIDKIESDTNDSEICTSLHISRKTFYE 50 (174)
T ss_pred hhHHHHHHHHHHHcCCcHHHHHHHHhccHHHHHH
Confidence 4457778888899998889999888776554443
No 64
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=26.74 E-value=2.1e+02 Score=22.85 Aligned_cols=67 Identities=12% Similarity=0.143 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHhhhhhcchhhhchhHHHHHHHHHhhccc-eeEE
Q psy17073 26 GVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL-FNVF 104 (219)
Q Consensus 26 gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~i~~l~~~Av~~v~~~-~~~~ 104 (219)
.++...+.+|+..|++ ..|+. .+..+..+..|...--++--..-.++.+|+++++..+.++++ |+.|
T Consensus 60 ~F~r~Kl~~gl~~A~~---------KRpVs---~e~ie~~v~~ie~~Lr~~g~~EV~S~~IG~~VM~~Lk~lD~VAYvRF 127 (156)
T COG1327 60 PFDREKLRRGLIRACE---------KRPVS---SEQIEEAVSHIERQLRSSGEREVPSKEIGELVMEELKKLDEVAYVRF 127 (156)
T ss_pred CCCHHHHHHHHHHHHh---------cCCCC---HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcchhhhhhh
Confidence 5788899999988753 23443 112222333333222222111223678999999999998875 4443
No 65
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=26.43 E-value=1.3e+02 Score=21.66 Aligned_cols=29 Identities=28% Similarity=0.521 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHc-----CCCHHHHHHHHHH
Q psy17073 10 LLAGEILKQVKPYVEE-----GVHPRIVIKAVRK 38 (219)
Q Consensus 10 vLa~~ll~~a~~li~~-----gihP~~Ii~g~~~ 38 (219)
++.|||+++|...-+. .+.|..+.++|+.
T Consensus 56 vFVGEiVE~A~~Vq~~~~~~~pl~P~hlreA~rr 89 (90)
T PF04719_consen 56 VFVGEIVEEARDVQEEWGETGPLQPDHLREAYRR 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHTT--SS--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHh
Confidence 5778999998886542 4788888877764
No 66
>COG3797 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.52 E-value=30 Score=28.20 Aligned_cols=52 Identities=25% Similarity=0.289 Sum_probs=45.2
Q ss_pred EEEecCCCHHHHHHHHHHHHH-HHHHHHHHHHcCcccccccHHHHHHHHHHHH
Q psy17073 114 TIIVRGGAEQFLEETERSLHD-AIMIVRRTIRNHAVVAGGGAIEMELSKALRD 165 (219)
Q Consensus 114 tI~irg~t~~~l~E~er~i~d-al~v~~~~~~~~~~v~GGG~~e~~l~~~l~~ 165 (219)
.|.++|.....+.|++-.+.| +++-++..+.+|.+|.-+.+.+-++-.+|+.
T Consensus 10 ~InVGgg~kV~MAdLka~~~dlGf~~v~T~iaSGNlvf~s~~~~~el~~klE~ 62 (178)
T COG3797 10 GVNVGGGRKVVMADLKAALTDLGFANVRTYIASGNLVFESEAGAAELEAKLEA 62 (178)
T ss_pred eeeecCCceEeHHHHHHHHHHcCcchhhHhhhcCCEEEEcCCChHHHHHHHHH
Confidence 588999999999999999999 7899999999999988887777777777765
No 67
>COG0049 RpsG Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]
Probab=25.24 E-value=1.3e+02 Score=23.78 Aligned_cols=32 Identities=28% Similarity=0.469 Sum_probs=27.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Q psy17073 171 AGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNK 206 (219)
Q Consensus 171 ~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~ 206 (219)
+|+...+.+++..||+.|- +=.|.||++++.+
T Consensus 32 ~GKK~~A~~Ivy~Af~ii~----~kTg~~Piqvf~~ 63 (148)
T COG0049 32 DGKKSLAEKIVYGAFDIIE----KKTGQNPLQVFEK 63 (148)
T ss_pred hccHHHHHHHHHHHHHHHH----HHHCCChHHHHHH
Confidence 7899999999999997664 4568899999876
No 68
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=23.02 E-value=2.6e+02 Score=21.73 Aligned_cols=52 Identities=10% Similarity=0.017 Sum_probs=37.1
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccccccHHHHHHHHHHH
Q psy17073 113 CTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALR 164 (219)
Q Consensus 113 ~tI~irg~t~~~l~E~er~i~dal~v~~~~~~~~~~v~GGG~~e~~l~~~l~ 164 (219)
--|+|.|..+.+-+..-..-..-...++.+.++|..|.|=+.-.+.|.+.|.
T Consensus 9 D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~ 60 (158)
T PF07685_consen 9 DGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESII 60 (158)
T ss_pred CEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence 3477777776666555444445557778888888878877777888888886
No 69
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=22.85 E-value=1e+02 Score=28.65 Aligned_cols=41 Identities=29% Similarity=0.494 Sum_probs=30.8
Q ss_pred cccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Q psy17073 149 VAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDAT 201 (219)
Q Consensus 149 v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~ 201 (219)
|||| .+++.+++. ++|-+...|-+.|+++||. -+..|+.|.
T Consensus 299 vPGG-----MlSNl~sQL------keqnaldK~~eVLeEvprV-redlGypPL 339 (472)
T COG5016 299 VPGG-----MLSNLESQL------KEQNALDKLEEVLEEVPRV-REDLGYPPL 339 (472)
T ss_pred CChH-----HHHHHHHHH------HHcchhhHHHHHHHHhHHH-HhhcCCCCc
Confidence 7887 455555544 6777889999999999994 478898764
No 70
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.79 E-value=3.5e+02 Score=22.33 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccccccHHHHHHHHHHHHHhcccchHHHH--HHHHHHHHHHHH
Q psy17073 122 EQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSIAGKEQL--LIGAVAKAFEVI 188 (219)
Q Consensus 122 ~~~l~E~er~i~dal~v~~~~~~~~~~v~GGG~~e~~l~~~l~~~~~~~~~~~~~--~~~~~a~al~~i 188 (219)
+..++|+|..+..-++-.+..++.|+....+ --..+..|+++.....|...+ +++.|+++|..+
T Consensus 8 E~~~~~le~~l~kl~K~~~~~~d~g~~~~~a---~~~F~~~l~d~~~~~~gd~~i~~~L~kF~~~l~ei 73 (200)
T cd07637 8 ETDVVEIEAKLDKLVKLCSGMIEAGKAYATT---NKLFVSGIRDLSQQCKKDEMISECLDKFGDSLQEM 73 (200)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777766543331 222222333333223333322 456666666555
No 71
>smart00574 POX domain associated with HOX domains.
Probab=22.73 E-value=1.7e+02 Score=23.02 Aligned_cols=43 Identities=23% Similarity=0.273 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcccccccHHHHHHHHHHHH
Q psy17073 123 QFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRD 165 (219)
Q Consensus 123 ~~l~E~er~i~dal~v~~~~~~~~~~v~GGG~~e~~l~~~l~~ 165 (219)
.+++|++|+-+--..-++.++..=-.|+|.|+.-...+-.|+.
T Consensus 84 ~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a 126 (140)
T smart00574 84 SMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKT 126 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 4667777776655555555544333567887765554444443
No 72
>PF09999 DUF2240: Uncharacterized protein conserved in archaea (DUF2240); InterPro: IPR018716 This family of various hypothetical archaeal proteins has no known function.
Probab=21.87 E-value=1.5e+02 Score=23.31 Aligned_cols=31 Identities=13% Similarity=0.367 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy17073 182 AKAFEVIPRQLSDNAGFDATNILNKLRQKHA 212 (219)
Q Consensus 182 a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~ 212 (219)
.+.|+.+...++.+.|++..++++.+...+.
T Consensus 84 ~~~fe~ild~ia~~~g~~~~evv~~in~~q~ 114 (144)
T PF09999_consen 84 RDPFERILDYIAAKTGIEKQEVVAEINELQE 114 (144)
T ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4688899999999999999999998877654
No 73
>PHA02591 hypothetical protein; Provisional
Probab=21.69 E-value=1.5e+02 Score=21.00 Aligned_cols=35 Identities=3% Similarity=0.114 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Q psy17073 15 ILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDE 49 (219)
Q Consensus 15 ll~~a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~ 49 (219)
+..-|.+|.++|+.+..|.+-+......+-++|++
T Consensus 48 ~~~vA~eL~eqGlSqeqIA~~LGVsqetVrKYL~~ 82 (83)
T PHA02591 48 LISVTHELARKGFTVEKIASLLGVSVRKVRRYLES 82 (83)
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHhc
Confidence 34556778889999999988887777777776654
No 74
>KOG2391|consensus
Probab=20.44 E-value=1.8e+02 Score=26.27 Aligned_cols=44 Identities=25% Similarity=0.501 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHcCcccccccHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q psy17073 128 TERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVA 182 (219)
Q Consensus 128 ~er~i~dal~v~~~~~~~~~~v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a 182 (219)
.+.+++|++.++..++++| ++ .+...|++. .+=.++||..++..
T Consensus 311 ~d~aieD~i~~L~~~~r~G-~i--------~l~~yLr~V--R~lsReQF~~rat~ 354 (365)
T KOG2391|consen 311 LDLAIEDAIYSLGKSLRDG-VI--------DLDQYLRHV--RLLSREQFILRATM 354 (365)
T ss_pred hhhHHHHHHHHHHHHHhcC-ee--------eHHHHHHHH--HHHHHHHHHHHHHH
Confidence 4678999999999999999 44 455666654 22347788665443
No 75
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=20.28 E-value=2.5e+02 Score=25.46 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcCccc-ccccHHHHHHHHHHHHH
Q psy17073 120 GAEQFLEETERSLHDAIMIVRRTIRNHAVV-AGGGAIEMELSKALRDY 166 (219)
Q Consensus 120 ~t~~~l~E~er~i~dal~v~~~~~~~~~~v-~GGG~~e~~l~~~l~~~ 166 (219)
.....+++.++.+.|++...+..++..++. .|++.....+++.|.+.
T Consensus 251 ~~~~~i~~e~~~~~~~l~~~~~~l~Gkrv~i~g~~~~~~~la~~L~el 298 (396)
T cd01979 251 IFPSVLAEREARAWRALEPYLDLLRGKSIFFMGDNLLEIPLARFLTRC 298 (396)
T ss_pred CChhHHHHHHHHHHHHHHHHHHhhcCCEEEEECCchHHHHHHHHHHHC
Confidence 344567777888999999999999887754 77888889999999874
No 76
>PF00196 GerE: Bacterial regulatory proteins, luxR family; InterPro: IPR000792 This domain is a DNA-binding, helix-turn-helix (HTH) domain of about 65 amino acids, present in transcription regulators of the LuxR/FixJ family of response regulators. The domain is named after Vibrio fischeri luxR, a transcriptional activator for quorum-sensing control of luminescence. LuxR-type HTH domain proteins occur in a variety of organisms. The DNA-binding HTH domain is usually located in the C-terminal region; the N-terminal region often containing an autoinducer-binding domain or a response regulatory domain. Most luxR-type regulators act as transcription activators, but some can be repressors or have a dual role for different sites. LuxR-type HTH regulators control a wide variety of activities in various biological processes. The luxR-type, DNA-binding HTH domain forms a four-helical bundle structure. The HTH motif comprises the second and third helices, known as the scaffold and recognition helix, respectively. The HTH binds DNA in the major groove, where the N-terminal part of the recognition helix makes most of the DNA contacts. The fourth helix is involved in dimerisation of gerE and traR. Signalling events by one of the four activation mechanisms described below lead to multimerisation of the regulator. The regulators bind DNA as multimers [, , ]. LuxR-type HTH proteins can be activated by one of four different mechanisms: 1) Regulators which belong to a two-component sensory transduction system where the protein is activated by its phosphorylation, generally on an aspartate residue, by a transmembrane kinase [, ]. Some proteins that belong to this category are: Rhizobiaceae fixJ (global regulator inducing expression of nitrogen-fixation genes in microaerobiosis) Escherichia coli and Salmonella typhimurium uhpA (activates hexose phosphate transport gene uhpT) E. coli narL and narP (activate nitrate reductase operon) Enterobacteria rcsB (regulation of exopolysaccharide biosynthesis in enteric and plant pathogenesis) Bordetella pertussis bvgA (virulence factor) Bacillus subtilis coma (involved in expression of late-expressing competence genes) 2) Regulators which are activated, or in very rare cases repressed, when bound to N-acyl homoserine lactones, which are used as quorum sensing molecules in a variety of Gram-negative bacteria []: V. fischeri luxR (activates bioluminescence operon) Agrobacterium tumefaciens traR (regulation of Ti plasmid transfer) Erwinia carotovora carR (control of carbapenem antibiotics biosynthesis) E. carotovora expR (virulence factor for soft rot disease; activates plant tissue macerating enzyme genes) Pseudomonas aeruginosa lasR (activates elastase gene lasB) Erwinia chrysanthemi echR and Erwinia stewartii esaR Pseudomonas chlororaphis phzR (positive regulator of phenazine antibiotic production) Pseudomonas aeruginosa rhlR (activates rhlAB operon and lasB gene) 3) Autonomous effector domain regulators, without a regulatory domain, represented by gerE []. B. subtilis gerE (transcription activator and repressor for the regulation of spore formation) 4) Multiple ligand-binding regulators, exemplified by malT []. E. coli malT (activates maltose operon; MalT binds ATP and maltotriose); GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3SZT_A 3CLO_A 1H0M_A 1L3L_A 3C57_B 1ZLK_B 1ZLJ_H 3C3W_B 1RNL_A 1ZG1_A ....
Probab=20.23 E-value=2.4e+02 Score=17.73 Aligned_cols=40 Identities=8% Similarity=0.137 Sum_probs=26.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q psy17073 19 VKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSD 58 (219)
Q Consensus 19 a~~li~~gihP~~Ii~g~~~a~~~~l~~L~~~s~~v~~~~ 58 (219)
...++.+|..+..|..-+.....-+-.++..+-..+...+
T Consensus 11 vl~~l~~G~~~~eIA~~l~is~~tV~~~~~~i~~Kl~~~~ 50 (58)
T PF00196_consen 11 VLRLLAQGMSNKEIAEELGISEKTVKSHRRRIMKKLGVKN 50 (58)
T ss_dssp HHHHHHTTS-HHHHHHHHTSHHHHHHHHHHHHHHHHT-SS
T ss_pred HHHHHHhcCCcchhHHhcCcchhhHHHHHHHHHHHhCCCC
Confidence 4556778999999988888877777777666544444333
No 77
>PF06760 DUF1221: Protein of unknown function (DUF1221); InterPro: IPR010632 This is a group of plant proteins, most of which are hypothetical and of unknown function. All members contain the IPR000719 from INTERPRO domain, suggesting that they may possess kinase activity.
Probab=20.03 E-value=5.2e+02 Score=21.56 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcCc-------ccccccHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Q psy17073 120 GAEQFLEETERSLHDAIMIVRRTIRNHA-------VVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQL 192 (219)
Q Consensus 120 ~t~~~l~E~er~i~dal~v~~~~~~~~~-------~v~GGG~~e~~l~~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L 192 (219)
+-+.=+.|+-|.++||=.-+|.++.... .--|--|+|.++-+.|.-+ +-++|.| .+-
T Consensus 44 ~LE~PLREl~rvfregE~YvR~CLd~k~WWaka~~~~~n~dcVE~hiHnlL~c~---------------~vviEAI-E~A 107 (217)
T PF06760_consen 44 PLEQPLRELHRVFREGEGYVRHCLDPKDWWAKAIALHQNTDCVEFHIHNLLWCF---------------PVVIEAI-ETA 107 (217)
T ss_pred ccchhHHHHHHHHhhhHHHHHHccCchhHHHHHHHHHcCcchHHHHHHHHHHHH---------------HHHHHHH-HHH
Confidence 3467789999999999999999985331 2335556676666555432 2233333 345
Q ss_pred HHhcCCCHHHHHH
Q psy17073 193 SDNAGFDATNILN 205 (219)
Q Consensus 193 ~~NaG~d~~~~~~ 205 (219)
.+.+|.|+.|+-.
T Consensus 108 gE~sG~D~dE~~r 120 (217)
T PF06760_consen 108 GEISGSDQDEMAR 120 (217)
T ss_pred hhccCCCHHHHHH
Confidence 6889999988754
Done!