RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17073
(219 letters)
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, eta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 522
Score = 229 bits (585), Expect = 1e-72
Identities = 91/114 (79%), Positives = 104/114 (91%)
Query: 101 FNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELS 160
+N+F+GC A+TCTII+RGGAEQF+EE ERSLHDAIMIVRR I+N +VVAGGGAIEMELS
Sbjct: 354 YNIFTGCPKAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELS 413
Query: 161 KALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQG 214
K LRDYSR+IAGK+QL+I A AKA E+IPRQL DNAGFDAT+ILNKLRQKHAQG
Sbjct: 414 KYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQG 467
Score = 170 bits (433), Expect = 3e-50
Identities = 66/102 (64%), Positives = 83/102 (81%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
VGDGTTSVV+LAGE LK+ KP++E+GVHP+I+I+ RKA +A++KI E+AV I K D
Sbjct: 86 VGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKE 145
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLFN 102
E R LLEKCAATAL+SKLI +K FF+KMVVDAV+SLDD +
Sbjct: 146 EQRELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDDDLD 187
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit. Members
of this family, all eukaryotic, are part of the group II
chaperonin complex called CCT (chaperonin containing
TCP-1) or TRiC. The archaeal equivalent group II
chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
eta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 523
Score = 196 bits (501), Expect = 2e-60
Identities = 82/114 (71%), Positives = 99/114 (86%)
Query: 101 FNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELS 160
+N+F+GC +A+TCTII+RGGAEQF+EE ERSLHDAIMIVRR ++N +VAGGGAIEMELS
Sbjct: 356 YNLFTGCPHAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKNKKIVAGGGAIEMELS 415
Query: 161 KALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQG 214
K LRDYS++I GK+QL+I A AKA EVIPRQL +NAGFD+ ILNKLR HA+G
Sbjct: 416 KCLRDYSKTIDGKQQLIINAFAKALEVIPRQLCENAGFDSIEILNKLRSAHAKG 469
Score = 146 bits (371), Expect = 2e-41
Identities = 66/99 (66%), Positives = 83/99 (83%), Gaps = 1/99 (1%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
VGDGTTSVV+LAGE+LK+ KP++EEGVHP+++I+ R+A S+A++KI E+AV I S+ G
Sbjct: 88 VGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRGYREALSLAIEKIKEIAVTI-DSEKG 146
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD 99
E R LLEKCAATALSSKLI K FFSKM+VDAV+SLD
Sbjct: 147 EQRELLEKCAATALSSKLIAHNKEFFSKMIVDAVLSLDR 185
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type
II. Chaperonins are involved in productive folding of
proteins. They share a common general morphology, a
double toroid of 2 stacked rings, each composed of 7-9
subunits. There are 2 main chaperonin groups. The
symmetry of type I is seven-fold and they are found in
eubacteria (GroEL) and in organelles of eubacterial
descent (hsp60 and RBP). The symmetry of type II is
eight- or nine-fold and they are found in archea
(thermosome), thermophilic bacteria (TF55) and in the
eukaryotic cytosol (CTT). Their common function is to
sequester nonnative proteins inside their central cavity
and promote folding by using energy derived from ATP
hydrolysis.
Length = 464
Score = 166 bits (423), Expect = 3e-49
Identities = 58/117 (49%), Positives = 79/117 (67%)
Query: 98 DDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEM 157
D+ + GCK + TI++RG E L+E ERSLHDA+ VR + + +V GGGA E+
Sbjct: 298 DEKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEI 357
Query: 158 ELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQG 214
ELSKAL + ++++ GKEQL I A A A EVIPR L++NAG D ++ KLR KHA+G
Sbjct: 358 ELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEG 414
Score = 116 bits (293), Expect = 2e-30
Identities = 42/104 (40%), Positives = 61/104 (58%), Gaps = 4/104 (3%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
VGDGTT+VV+LAGE+LK+ + + G+HP +I+ KA AL+ + E+AV I D
Sbjct: 78 VGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVED-- 135
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLFNVF 104
R L K A T+L+SKL+ F ++VVDAV+ +
Sbjct: 136 --REELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGDV 177
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. This family
includes members from the HSP60 chaperone family and the
TCP-1 (T-complex protein) family.
Length = 481
Score = 133 bits (338), Expect = 7e-37
Identities = 53/117 (45%), Positives = 80/117 (68%)
Query: 98 DDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEM 157
+D GC + + TI++RG + L+E ER++ DA+ V+ +++ VV GGGA E+
Sbjct: 313 EDKTTFIEGCLSGKVATILLRGATDHELDELERAIEDALNAVKAALKDEGVVPGGGAAEL 372
Query: 158 ELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQG 214
ELS+ALR+Y++S++GKEQL I A A+A EVIPR L++NAG D +L KL+ H +G
Sbjct: 373 ELSRALREYAKSVSGKEQLGIEAFAEALEVIPRTLAENAGLDPIEVLAKLKAAHKKG 429
Score = 94.2 bits (235), Expect = 2e-22
Identities = 41/127 (32%), Positives = 69/127 (54%), Gaps = 9/127 (7%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
VGDGTT+ V+LAGE+L++ + +E G+HP +I+ A +AL+ ++EL++ + D
Sbjct: 59 VGDGTTTAVVLAGELLEEAEKLIEAGIHPTDIIRGYELALEIALKALEELSIPVSDDDE- 117
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLFNVFSGCKNARTCTIIVRGG 120
L A T+L+SK+ ++ K+VVDAV+ + + F+V N I
Sbjct: 118 ----DLLNVARTSLNSKISSRESELLGKLVVDAVLLIIEKFDV----GNIGVIKIEGGSL 169
Query: 121 AEQFLEE 127
+ L E
Sbjct: 170 EDSELIE 176
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family. Chaperonins are involved
in productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
Archaeal cpn60 (thermosome), together with TF55 from
thermophilic bacteria and the eukaryotic cytosol
chaperonin (CTT), belong to the type II group of
chaperonins. Cpn60 consists of two stacked octameric
rings, which are composed of one or two different
subunits. Their common function is to sequester
nonnative proteins inside their central cavity and
promote folding by using energy derived from ATP
hydrolysis.
Length = 517
Score = 134 bits (339), Expect = 9e-37
Identities = 54/110 (49%), Positives = 77/110 (70%)
Query: 106 GCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRD 165
GCKN + TI++RGG E ++E ER+L DA+ +V + + VVAGGGA+E+EL+K LR+
Sbjct: 357 GCKNPKAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLRE 416
Query: 166 YSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGR 215
Y+RS+ G+EQL + A A A E IPR L++NAG D + L +LR H +G
Sbjct: 417 YARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGN 466
Score = 88.9 bits (221), Expect = 1e-20
Identities = 36/96 (37%), Positives = 60/96 (62%), Gaps = 4/96 (4%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
VGDGTT+ V+LAGE+L++ + +++ +HP ++I+ R A AL+ +DE+A+K+ D
Sbjct: 85 VGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDD-- 142
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMS 96
+ L K A T+L+ K K + +VVDAV+
Sbjct: 143 --KDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQ 176
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational
modification, protein turnover, chaperones].
Length = 524
Score = 129 bits (326), Expect = 5e-35
Identities = 49/118 (41%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 98 DDLFNVFSGCKN--ARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAI 155
D K TI+VRG E L+E ER + DA+ +VR + +V GGGA
Sbjct: 344 DYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAA 403
Query: 156 EMELSKALRDYSRSIAG-KEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHA 212
E+E + LR+Y+ ++ G EQL I A A+A E PRQL++NAG D +L+KLR HA
Sbjct: 404 EIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHA 461
Score = 86.5 bits (215), Expect = 9e-20
Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 7/99 (7%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
GDGTT+ V+LAG +LK+ + + G+HP ++ + R A A++++ E+A + S+
Sbjct: 81 AGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSE-- 138
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD 99
K A T+++SK + + ++VV+AV +
Sbjct: 139 ----EELKIAITSVASKSANSDE-EIGELVVEAVEKVGK 172
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal.
Thermosome is the name given to the archaeal rather
than eukaryotic form of the group II chaperonin
(counterpart to the group I chaperonin, GroEL/GroES, in
bacterial), a torroidal, ATP-dependent molecular
chaperone that assists in the folding or refolding of
nascent or denatured proteins. Various homologous
subunits, one to five per archaeal genome, may be
designated alpha, beta, etc., but phylogenetic analysis
does not show distinct alpha subunit and beta subunit
lineages traceable to ancient paralogs [Protein fate,
Protein folding and stabilization].
Length = 519
Score = 128 bits (323), Expect = 1e-34
Identities = 55/109 (50%), Positives = 75/109 (68%)
Query: 106 GCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRD 165
GCKN + TI++RGG E ++E ERSL DA+ +V + + VVAGGGA+E+E++ LR
Sbjct: 360 GCKNPKAVTILLRGGTEHVVDELERSLQDALHVVASALEDGKVVAGGGAVEIEIALRLRS 419
Query: 166 YSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQG 214
Y+R I G+EQL I A A A E IPR L++NAG D + L +LR KH +G
Sbjct: 420 YARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKG 468
Score = 80.1 bits (198), Expect = 2e-17
Identities = 43/101 (42%), Positives = 66/101 (65%), Gaps = 5/101 (4%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
VGDGTT+ V+LAGE+L++ + +E+ +HP ++I+ RKA AL+ IDE+A KI D
Sbjct: 86 VGDGTTTAVVLAGELLEKAEDLLEQDIHPTVIIEGYRKAAEKALEIIDEIATKISPED-- 143
Query: 61 EYRGLLEKCAATALSSKLIHQQ-KGFFSKMVVDAVMSLDDL 100
R LL+K A T+L+SK + K + +VV+AV + +L
Sbjct: 144 --RDLLKKVAETSLTSKASAEVAKDKLANLVVEAVKQVAEL 182
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin
family, gamma subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 480
Score = 123 bits (312), Expect = 4e-33
Identities = 56/131 (42%), Positives = 76/131 (58%), Gaps = 5/131 (3%)
Query: 84 GFFSKMVVDAVMSLDDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTI 143
G F + D+ F + CK+ + CTI++RG ++ L E ER+L DA+ + R I
Sbjct: 303 GLFEVKKIG-----DEYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARNII 357
Query: 144 RNHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNI 203
N +V GGGA EM +S AL + ++SI G EQ AVA A EVIPR L+ N G +
Sbjct: 358 LNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRT 417
Query: 204 LNKLRQKHAQG 214
L +LR KHAQG
Sbjct: 418 LTELRAKHAQG 428
Score = 84.3 bits (209), Expect = 6e-19
Identities = 34/96 (35%), Positives = 60/96 (62%), Gaps = 4/96 (4%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
VGDGTTSV++LAGEIL +P++E G+HP ++IKA RKA AL+ ++E+++ + +D
Sbjct: 86 VGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRA 145
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMS 96
+ + K + + +K + + + +DAV +
Sbjct: 146 Q----MLKIIKSCIGTKFVSRWSDLMCNLALDAVKT 177
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin
family, alpha subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 527
Score = 121 bits (306), Expect = 4e-32
Identities = 50/115 (43%), Positives = 75/115 (65%)
Query: 98 DDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEM 157
DD + G K + +II+RG + L+E ERSLHDA+ +V+RT+ +++VV GGGA+E
Sbjct: 350 DDELILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVET 409
Query: 158 ELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHA 212
LS L +++ ++ +EQL I A+A VIP+ L+ NA DAT ++ KLR HA
Sbjct: 410 ALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHA 464
Score = 79.3 bits (196), Expect = 3e-17
Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDE-LAVKIQKSDS 59
VGDGTTSVV++A E+LK+ V++ +HP +I R A A++ I E L++ +
Sbjct: 78 VGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLG- 136
Query: 60 GEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMS 96
+ L A T++SSK+I FF+ MVVDA+++
Sbjct: 137 ---KESLINVAKTSMSSKIIGADSDFFANMVVDAILA 170
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional.
Length = 533
Score = 120 bits (304), Expect = 6e-32
Identities = 48/125 (38%), Positives = 80/125 (64%)
Query: 91 VDAVMSLDDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVA 150
++ +M +D FSGC CTI++RG + L+E ERSLHDA+ ++ +T+++ VV
Sbjct: 351 IEEIMIGEDKLIRFSGCAKGEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVL 410
Query: 151 GGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQK 210
GGG EM ++ A+ + ++ + GK+ L I A AKA IP ++DN G+D+ +++KLR +
Sbjct: 411 GGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAE 470
Query: 211 HAQGR 215
H +G
Sbjct: 471 HYKGN 475
Score = 90.9 bits (226), Expect = 3e-21
Identities = 41/102 (40%), Positives = 66/102 (64%), Gaps = 1/102 (0%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
VGDGTTSVV+LAGE+L++ + +++ +HP+ +I+ R A +A + ++E+A SD
Sbjct: 97 VGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFD-HGSDEE 155
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLFN 102
+++ L A T LSSKL+ +K F+K+ VDAV+ L N
Sbjct: 156 KFKEDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKGSGN 197
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, delta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 515
Score = 120 bits (302), Expect = 1e-31
Identities = 49/112 (43%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
Query: 104 FSGCKNA-RTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKA 162
+G KN +T TI+VRG + L+E ERSLHDA+ ++R ++ A++ GGGA E+E++
Sbjct: 353 ITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQ 412
Query: 163 LRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQG 214
L +++R++ G EQ + A A A EVIP L++NAG + +I+ +LR +HAQG
Sbjct: 413 LSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQG 464
Score = 78.5 bits (194), Expect = 5e-17
Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 4/98 (4%)
Query: 2 GDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGE 61
GDGTTSVV+LAG +L + +++G+HP ++ ++ + A A++ +D +++ + +D
Sbjct: 79 GDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLND--- 135
Query: 62 YRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD 99
R L K A T+L+SK++ Q + + VDAV+ + D
Sbjct: 136 -RESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVID 172
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, beta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 517
Score = 119 bits (300), Expect = 2e-31
Identities = 48/126 (38%), Positives = 80/126 (63%)
Query: 90 VVDAVMSLDDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVV 149
+++ +M +D FSG CTI++RG ++Q L+E ERSLHDA+ ++ +T+++ VV
Sbjct: 338 LIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVV 397
Query: 150 AGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQ 209
GGG EM ++KA+ + ++ GK+ L I A AKA +P ++DNAG+D+ ++ +LR
Sbjct: 398 LGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRA 457
Query: 210 KHAQGR 215
H G
Sbjct: 458 AHYNGN 463
Score = 87.4 bits (217), Expect = 4e-20
Identities = 40/99 (40%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
VGDGTTSV +LA E+L++ + V + +HP+ +I+ R AT+ A + + AV SD
Sbjct: 85 VGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVD-HSSDEE 143
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD 99
+R L A T LSSK++ Q K F+++ VDAV+ L
Sbjct: 144 AFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKG 182
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
gamma chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 525
Score = 116 bits (293), Expect = 2e-30
Identities = 46/117 (39%), Positives = 68/117 (58%)
Query: 98 DDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEM 157
D+ F F+ CK+ + CTI++RG ++ L E ER+L DA+ + R + ++ GGGA EM
Sbjct: 353 DEYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEM 412
Query: 158 ELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQG 214
+S L + + G +Q AVA A E+IPR L+ N G + L +LR KHAQ
Sbjct: 413 AVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQE 469
Score = 76.7 bits (189), Expect = 2e-16
Identities = 32/94 (34%), Positives = 58/94 (61%), Gaps = 4/94 (4%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
VGDGTTSV++LAGE+L +P++E+ +HP I+I+A +KA AL ++E+++ + +D
Sbjct: 86 VGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDA 145
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAV 94
L++ C + +K + + + +DAV
Sbjct: 146 AMLKLIQSC----IGTKFVSRWSDLMCDLALDAV 175
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 536
Score = 112 bits (282), Expect = 7e-29
Identities = 53/134 (39%), Positives = 85/134 (63%), Gaps = 2/134 (1%)
Query: 84 GFFSKMVVDAVMSLDDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTI 143
GF ++V + + DD + G K + +II+RG + L+E ERSLHDA+ +V+RT+
Sbjct: 342 GFADEVVQERIA--DDECILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRTL 399
Query: 144 RNHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNI 203
+++VV GGGA+E LS L +++ ++ +EQL I A+A +IP+ L+ NA D+T +
Sbjct: 400 ESNSVVPGGGAVEAALSIYLENFATTLGSREQLAIAEFAEALLIIPKTLAVNAAKDSTEL 459
Query: 204 LNKLRQKHAQGRLK 217
+ KLR HA +LK
Sbjct: 460 VAKLRAYHAAAQLK 473
Score = 77.5 bits (191), Expect = 1e-16
Identities = 40/98 (40%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDE-LAVKIQKSDS 59
VGDGTTSVV++A E+LK+ V+ VHP +I R A A++ I E L+V +
Sbjct: 82 VGDGTTSVVIIAAELLKRANELVKNKVHPTSIISGYRLALKEAVKYIKENLSVSVDTLG- 140
Query: 60 GEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL 97
+ L A T++SSK+I FFS +VVDAV+++
Sbjct: 141 ---KEALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAV 175
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
delta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 517
Score = 110 bits (277), Expect = 3e-28
Identities = 45/113 (39%), Positives = 74/113 (65%), Gaps = 1/113 (0%)
Query: 105 SGCKNAR-TCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKAL 163
+G +NA T T++VRG + ++E ERSLHDA+ ++R ++ ++AGGGA E+E+++ L
Sbjct: 355 TGIQNAGKTVTVVVRGSNKLVIDEAERSLHDALCVIRCLVKKRGLIAGGGAPEIEIARRL 414
Query: 164 RDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGRL 216
Y+R++ G E + A A A EVIP L++NAG + ++ +LR +HA G
Sbjct: 415 SKYARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIKVVTELRNRHANGEK 467
Score = 79.8 bits (197), Expect = 2e-17
Identities = 37/98 (37%), Positives = 61/98 (62%), Gaps = 4/98 (4%)
Query: 2 GDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGE 61
GDGTTSVV+LAG +L + + +G+HP I+ ++ + A A++ +DE+++ + SD
Sbjct: 80 GDGTTSVVILAGALLGACERLLNKGIHPTIISESFQSAADEAIKILDEMSIPVDLSD--- 136
Query: 62 YRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD 99
R L K A T+LSSK++ Q + + VDAV+ + D
Sbjct: 137 -REQLLKSATTSLSSKVVSQYSSLLAPLAVDAVLKVID 173
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
beta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 518
Score = 109 bits (274), Expect = 8e-28
Identities = 50/126 (39%), Positives = 80/126 (63%)
Query: 90 VVDAVMSLDDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVV 149
+++ +M +D FSG K CTI++RG +Q L+E ERSLHDA+ ++ +T++ V
Sbjct: 338 LIEEIMIGEDKLLKFSGVKAGEACTIVLRGATQQILDEAERSLHDALCVLSQTVKESRTV 397
Query: 150 AGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQ 209
GGG EM +SKA+ +++I GK+ L + A A+A +P L+DNAGFD++ ++ +LR
Sbjct: 398 LGGGCAEMLMSKAVDTEAQNIPGKKALAVEAFARALRQLPTILADNAGFDSSELVAQLRA 457
Query: 210 KHAQGR 215
H G
Sbjct: 458 AHYNGN 463
Score = 76.4 bits (188), Expect = 3e-16
Identities = 48/130 (36%), Positives = 72/130 (55%), Gaps = 11/130 (8%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
VGDGTTSV +LA E+L++ + + + +HP+ +I+ R AT AL + + AV SD
Sbjct: 85 VGDGTTSVTVLAAELLREAEKLINQKIHPQTIIEGYRLATKAALDALTKSAVD-NSSDKT 143
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLFNVFSGCKNARTCTIIVRGG 120
++R L A T LSSK++ Q K F+++ VDAV+ L G N II G
Sbjct: 144 KFREDLINIARTTLSSKILSQHKDHFAQLAVDAVLRL-------KGSTNLEAIQIIKILG 196
Query: 121 ---AEQFLEE 127
++ FL+E
Sbjct: 197 GKLSDSFLDE 206
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, theta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 472
Score = 100 bits (251), Expect = 1e-24
Identities = 43/117 (36%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Query: 103 VFSGCKNA-RTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSK 161
VF K + TI++RG + L++ ER++ D + + + ++ V G GA E+EL+K
Sbjct: 306 VFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAK 365
Query: 162 ALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGRLKI 218
L++Y G EQ I A+AFEV+PR L++NAG DAT +L++L H +G
Sbjct: 366 KLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSA 422
Score = 63.4 bits (155), Expect = 8e-12
Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 11/120 (9%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
+GDGT VV+LAGE+L++ + + G+HP +I+ KA AL+ ++EL + K +
Sbjct: 78 IGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELV--VYKIEDL 135
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL----DDLFNVFSGCKNARTCTII 116
+ + K TA++SK + F S +V +A +S+ FNV N R I+
Sbjct: 136 RNKEEVSKALKTAIASKQYGNED-FLSPLVAEACISVLPENIGNFNV----DNIRVVKIL 190
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 99.0 bits (247), Expect = 4e-24
Identities = 37/111 (33%), Positives = 64/111 (57%)
Query: 108 KNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 167
++R TII+RG + L++ ER++ D + +V+ +++ + G GA E+EL+ L Y+
Sbjct: 360 GDSRISTIILRGSTKNLLDDIERAIDDGVNVVKALVKDGRFLPGAGATEIELASRLTKYA 419
Query: 168 RSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGRLKI 218
G +Q I A+AFE+IPR L++NAG + ++ KL H +G
Sbjct: 420 EKTPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSK 470
Score = 57.0 bits (138), Expect = 1e-09
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 13/120 (10%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAV-KIQKSDS 59
+GDGT V++LAGE+L + + + G+HP +IK A A++ ++EL V +I+
Sbjct: 88 IGDGTNLVIVLAGELLNKAEELIRMGLHPSEIIKGYEMALKKAMEVLEELVVWEIEDLRD 147
Query: 60 GEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL----DDLFNVFSGCKNARTCTI 115
+ L K ++SSK + F S++V A ++ FNV N R I
Sbjct: 148 KKE---LIKALKASISSKQYGNED-FLSQLVAKACSTVLPKNPQNFNV----DNIRVVKI 199
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin
family, epsilon subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 526
Score = 98.5 bits (246), Expect = 5e-24
Identities = 42/109 (38%), Positives = 67/109 (61%)
Query: 103 VFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKA 162
V GC N++ TI +RGG + +EE +RSLHDA+ +VR IR++ +V GGGA E+ S A
Sbjct: 364 VIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLA 423
Query: 163 LRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKH 211
+ + +G EQ + A A A E IP L++N+G + L++++ +
Sbjct: 424 VEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQ 472
Score = 75.4 bits (186), Expect = 7e-16
Identities = 36/100 (36%), Positives = 64/100 (64%), Gaps = 2/100 (2%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
+GDGTT VV+LAG +L+Q + ++ G+HP + +A +A++ ++E+A KI S
Sbjct: 93 IGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKI--EFSP 150
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL 100
+ + L + A T+L SK++ + F+++ VDAV+S+ DL
Sbjct: 151 DNKEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADL 190
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
epsilon chain (part of a paralogous family) from
animals, plants, fungi, and other eukaryotes.
Length = 532
Score = 90.2 bits (224), Expect = 4e-21
Identities = 43/108 (39%), Positives = 64/108 (59%)
Query: 103 VFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKA 162
V CKN++ TI +RGG + +EE +RS+HDA+ +VR I++ +V GGGA E+ S A
Sbjct: 368 VIEQCKNSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKDSRIVYGGGAAEISCSLA 427
Query: 163 LRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQK 210
+ + +G EQ I A A A E IP L++N+G D L+ L+
Sbjct: 428 VSQEADKYSGVEQYAIRAFADALETIPMALAENSGLDPIGTLSTLKSL 475
Score = 69.8 bits (171), Expect = 5e-14
Identities = 33/100 (33%), Positives = 65/100 (65%), Gaps = 2/100 (2%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
+GDGTT VV+LAG +L+Q + +++G+HP + + +A +A++ ++E++ +I S
Sbjct: 97 IGDGTTGVVVLAGALLEQAEELLDKGIHPIKIAEGFEEAARVAVEHLEEISDEI--SADN 154
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL 100
R L + A T+L SK++ + F+++ VDAV+++ D+
Sbjct: 155 NNREPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLNVADM 194
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, zeta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 484
Score = 87.7 bits (218), Expect = 3e-20
Identities = 37/122 (30%), Positives = 70/122 (57%)
Query: 98 DDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEM 157
++ + G KN ++CTI+++G + + + + ++ D + V+ I + VV G GA E+
Sbjct: 315 EEKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEV 374
Query: 158 ELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGRLK 217
L L+++ +S+ GK +L + A A A VIP+ L++N+G D L KL+ ++A+G
Sbjct: 375 ALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQV 434
Query: 218 IL 219
Sbjct: 435 GG 436
Score = 73.8 bits (182), Expect = 2e-15
Identities = 39/95 (41%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
GDGTTS VLL GE+LKQ + Y++EGVHPRI+ + A + AL+ ++ V ++
Sbjct: 82 TGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTD- 140
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVM 95
R LL A T+L +KL +++VVDAV+
Sbjct: 141 --RELLLSVARTSLRTKLHADLADQLTEIVVDAVL 173
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
zeta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 85.2 bits (211), Expect = 3e-19
Identities = 37/109 (33%), Positives = 66/109 (60%)
Query: 107 CKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDY 166
KN ++CTI+++G + + + + ++ D + V+ I + VV G GA E+ + L++
Sbjct: 367 VKNPKSCTILIKGPNDHTIAQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYRHLKEN 426
Query: 167 SRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGR 215
+S+ GK +L + A A A VIP+ L++N+GFDA + L KL +H +G
Sbjct: 427 KKSVKGKAKLGVEAFANALLVIPKTLAENSGFDAQDTLVKLEDEHDEGG 475
Score = 75.2 bits (185), Expect = 7e-16
Identities = 38/97 (39%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
GDGTTS V+L GE+LKQ + Y+ EGVHPRI+ + A L+ +D+ VK +
Sbjct: 86 TGDGTTSTVILIGELLKQAERYILEGVHPRIITEGFEIARKELLEFLDKFKVKTEDEVD- 144
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL 97
R L A T+L +KL +++VVDAV+++
Sbjct: 145 --REFLLNVARTSLRTKLPIDLADQLTEIVVDAVLAI 179
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily. Chaperonins
are involved in productive folding of proteins. They
share a common general morphology, a double toroid of 2
stacked rings, each composed of 7-9 subunits. There are
2 main chaperonin groups. The symmetry of type I is
seven-fold and they are found in eubacteria (GroEL) and
in organelles of eubacterial descent (hsp60 and RBP).
The symmetry of type II is eight- or nine-fold and they
are found in archea (thermosome), thermophilic bacteria
(TF55) and in the eukaryotic cytosol (CTT). Their
common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. This superfamily
also contains related domains from Fab1-like
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases
that only contain the intermediate and apical domains.
Length = 209
Score = 67.9 bits (167), Expect = 5e-14
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 98 DDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRN 145
++ GCK + TI++RG E L+E +RSLHDA+ VR +
Sbjct: 162 EEKLTFIEGCKGGKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209
Score = 38.2 bits (90), Expect = 0.001
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 63 RGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLFNVF 104
R LL + A T+L+SKL F K+VVDAV+ + +
Sbjct: 1 RELLLQVATTSLNSKLSSWDD-FLGKLVVDAVLKVGPDNRMD 41
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of
type I is seven-fold and they are found in eubacteria
(GroEL) and in organelles of eubacterial descent (hsp60
and RBP). With the aid of cochaperonin GroES, GroEL
encapsulates non-native substrate proteins inside the
cavity of the GroEL-ES complex and promotes folding by
using energy derived from ATP hydrolysis.
Length = 520
Score = 40.1 bits (95), Expect = 4e-04
Identities = 15/58 (25%), Positives = 32/58 (55%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSD 58
GDGTT+ +LA I+K+ V G +P + + + KA ++++ +L+ ++ +
Sbjct: 82 AGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKE 139
Score = 35.5 bits (83), Expect = 0.014
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 148 VVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKL 207
+V GGG + S AL G E+L I V +A E RQ+++NAG D + ++ K+
Sbjct: 408 IVPGGGVALLRASPALDKLKALN-GDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKV 466
Query: 208 RQK 210
+
Sbjct: 467 LES 469
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL.
Length = 529
Score = 37.8 bits (88), Expect = 0.003
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 2 GDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDS 59
GDGTT+ +LA I+KQ V G +P + + + KAT + +I E A ++ +
Sbjct: 85 GDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDIQA 142
Score = 35.5 bits (82), Expect = 0.017
Identities = 29/98 (29%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 115 IIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSIAGKE 174
I V E +++ + L DAI + + +V GGGA + LS+ L+ ++++ KE
Sbjct: 378 IKVGAATETEMKDKKLRLEDAINATKAAVE-EGIVPGGGATLVHLSENLKTWAKNNL-KE 435
Query: 175 QLLIGA--VAKAFEVIPRQLSDNAGFDATNILNKLRQK 210
LIGA VA+A +++++NAG + + I+ K++++
Sbjct: 436 DELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ 473
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL. This family consists of GroEL,
the larger subunit of the GroEL/GroES cytosolic
chaperonin. It is found in bacteria, organelles derived
from bacteria, and occasionally in the Archaea. The
bacterial GroEL/GroES group I chaperonin is replaced a
group II chaperonin, usually called the thermosome in
the Archaeota and CCT (chaperone-containing TCP) in the
Eukaryota. GroEL, thermosome subunits, and CCT subunits
all fall under the scope of pfam00118 [Protein fate,
Protein folding and stabilization].
Length = 524
Score = 36.9 bits (86), Expect = 0.006
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 115 IIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSIAGKE 174
I V E ++E + + DA+ R + +V GGG + + AL + E
Sbjct: 377 IKVGAATETEMKEKKLRIEDALNATRAAVE-EGIVPGGGVALLRAAAALEGL-KGDGEDE 434
Query: 175 QLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQK 210
+ I V +A E RQ+++NAG D + K+++
Sbjct: 435 AIGIDIVKRALEAPLRQIAENAGLDGAVVAEKVKEL 470
Score = 35.7 bits (83), Expect = 0.013
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 2 GDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDS 59
GDGTT+ +LA I+K+ V G +P + + + KA ++++ +L+ ++
Sbjct: 84 GDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAVVEELKKLSKPVKGKKE 141
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional.
Length = 555
Score = 36.0 bits (84), Expect = 0.012
Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 109 NARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS- 167
+ I V G +E + E + + DA+ R + +V GGG + SK L
Sbjct: 385 SGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEE-GIVPGGGVALLRASKLLDKLEE 443
Query: 168 -RSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKL 207
+ ++ + V A + +Q+++NAG + ++ K+
Sbjct: 444 DNELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKI 484
Score = 34.9 bits (81), Expect = 0.029
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 2 GDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKI 54
GDGTT+ +LA I ++ V G++P + + + A + L+ + E + +
Sbjct: 97 GDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPV 149
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 35.5 bits (83), Expect = 0.016
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 148 VVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKL 207
+V GGG + + AL + + + G E I V +A E RQ+++NAG + + ++ K+
Sbjct: 410 IVPGGGVALLRAAPAL-EALKGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEKV 468
Query: 208 R 208
+
Sbjct: 469 K 469
Score = 29.7 bits (68), Expect = 1.1
Identities = 14/57 (24%), Positives = 33/57 (57%)
Query: 2 GDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSD 58
GDGTT+ +LA I+++ V G +P + + + KA A++++ +++ ++ +
Sbjct: 85 GDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKE 141
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 34.4 bits (80), Expect = 0.039
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 112 TCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSIA 171
I V E L+E + + DA+ R + +V GGG + +KAL + +
Sbjct: 375 VAVIKVGAATEVELKERKDRVEDALNATRAAVE-EGIVPGGGVALLRAAKALDEL-AGLN 432
Query: 172 GKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQ 209
G + + V +A E RQ+++NAG D + ++ K+ +
Sbjct: 433 GDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLE 470
Score = 30.2 bits (69), Expect = 0.85
Identities = 15/59 (25%), Positives = 31/59 (52%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDS 59
GDGTT+ +LA ++++ V G +P + + + KA ++++ LA + S+
Sbjct: 84 AGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEE 142
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed.
Length = 544
Score = 34.3 bits (79), Expect = 0.046
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 115 IIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSIAGKE 174
I V G E ++E + + DA+ R + +V GGG + ALR + E
Sbjct: 379 IRVGGATEVEVKEKKDRVDDALHATRAAVE-EGIVPGGGVALLRARSALRGL-KGANADE 436
Query: 175 QLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLR 208
I V +A E RQ++ NAGF+ + ++ K+
Sbjct: 437 TAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVA 470
Score = 33.9 bits (78), Expect = 0.048
Identities = 15/58 (25%), Positives = 32/58 (55%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSD 58
GDGTT+ +LA I+++ V G++P + + + A + + ++ ++A K+ S
Sbjct: 85 AGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSK 142
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 33.9 bits (78), Expect = 0.056
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 49 ELAVKIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL 100
E ++ SD +Y +L LS + ++ K+++ A+ +LDD+
Sbjct: 78 EALGELSSSDEDDYYRML-LGLGHELSRIKVREEVDKEDKLIIQAIEALDDI 128
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed.
Length = 541
Score = 33.6 bits (77), Expect = 0.069
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 115 IIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSIAGKE 174
I V E ++E + + DA+ R + +V GGG + KAL D + G +
Sbjct: 379 IRVGASTEVEVKEKKDRVDDALHATRAAVE-EGIVPGGGVALLRAVKAL-DKLETANGDQ 436
Query: 175 QLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQK 210
+ + V +A E RQ+++NAG + + ++ KLR+K
Sbjct: 437 RTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLREK 472
Score = 30.1 bits (68), Expect = 1.0
Identities = 13/58 (22%), Positives = 30/58 (51%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSD 58
GDGTT+ +LA I+++ V G +P + + + +A + ++++ A + +
Sbjct: 85 AGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNA 142
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed.
Length = 545
Score = 31.7 bits (72), Expect = 0.29
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 115 IIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSIAGKE 174
I V G E ++E + + DA+ R ++ +V GGG + KA+ + A
Sbjct: 379 IRVGGATEVEVKEKKDRVEDALNATRAAVQ-EGIVPGGGVALLRAKKAVGRINNDNA-DV 436
Query: 175 QLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQK 210
Q I V KA E RQ+++NAG + + ++ K+ +
Sbjct: 437 QAGINIVLKALEAPIRQIAENAGVEGSIVVGKILEN 472
Score = 29.8 bits (67), Expect = 1.3
Identities = 15/56 (26%), Positives = 31/56 (55%)
Query: 2 GDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKS 57
GDGTT+ +LA I+++ V G++P + + + A + ++ I++ A + S
Sbjct: 86 GDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASS 141
>gnl|CDD|99800 cd06203, methionine_synthase_red, Human methionine synthase
reductase (MSR) restores methionine sythase which is
responsible for the regeneration of methionine from
homocysteine, as well as the coversion of
methyltetrahydrofolate to tetrahydrofolate. In MSR,
electrons are transferred from NADPH to FAD to FMN to
cob(II)alamin. MSR resembles proteins of the cytochrome
p450 family including nitric oxide synthase, the alpha
subunit of sulfite reductase, but contains an extended
hinge region. NADPH cytochrome p450 reductase (CYPOR)
serves as an electron donor in several oxygenase systems
and is a component of nitric oxide synthases and
methionine synthase reductases. CYPOR transfers two
electrons from NADPH to the heme of cytochrome p450 via
FAD and FMN. CYPORs resemble ferredoxin reductase (FNR)
but have a connecting subdomain inserted within the
flavin binding region, which helps orient the FMN
binding doamin with the FNR module. Ferredoxin-NADP+
(oxido)reductase is an FAD-containing enzyme that
catalyzes the reversible electron transfer between
NADP(H) and electron carrier proteins such as ferredoxin
and flavodoxin. Isoforms of these flavoproteins (i.e.
having a non-covalently bound FAD as a prosthetic group)
are present in chloroplasts, mitochondria, and bacteria
in which they participate in a wide variety of redox
metabolic pathways. The C-terminal domain contains most
of the NADP(H) binding residues and the N-terminal
domain interacts non-covalently with the isoalloxazine
rings of the flavin molecule which lies largely in a
large gap betweed the two domains. Ferredoxin-NADP+
reductase first accepts one electron from reduced
ferredoxin to form a flavin semiquinone intermediate.
The enzyme then accepts a second electron to form FADH2
which then transfers two electrons and a proton to NADP+
to form NADPH.
Length = 398
Score = 30.4 bits (69), Expect = 0.75
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 9/52 (17%)
Query: 57 SDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLFNVFSGCK 108
SD E R L E C+ Q ++ V +SL DL F C+
Sbjct: 117 SDDNEKRRLEELCSK---------QGSEDYTDFVRKRGLSLLDLLEAFPSCR 159
>gnl|CDD|185627 PTZ00448, PTZ00448, hypothetical protein; Provisional.
Length = 373
Score = 30.0 bits (67), Expect = 1.0
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Query: 81 QQKGFFSKMVVDAVMSLDDLFNVFSGCKNARTCTIIVRGGAEQFLEETERS-------LH 133
Q + F+ + + + DDL VF C I+ G Q + ETERS
Sbjct: 52 QIRTIFANVSKGQLANSDDLNTVFGTNSIDNICKTILSKGEIQ-VSETERSYMLDKQFTD 110
Query: 134 DAIMIVRRTIR-NHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQL 192
M+ R T+ + + IE EL + S + KEQ L KAF+++ +++
Sbjct: 111 ICHMLNRMTVNPKNNLPLSVKIIESELKDSGFSVSLNKTTKEQAL-----KAFDILKKRI 165
Query: 193 SD 194
D
Sbjct: 166 PD 167
>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and
conversion].
Length = 793
Score = 30.0 bits (68), Expect = 1.2
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 130 RSLHD--AIMIVRRTIRNHAVVAGGGAIEMELSKALRD 165
R++ D A++ R + AVV GGG + +E ++ L+D
Sbjct: 130 RTIDDVEAMLDCARN-KKKAVVIGGGLLGLEAARGLKD 166
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional.
Length = 546
Score = 29.6 bits (66), Expect = 1.5
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 115 IIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSIAGKE 174
I V G E ++E + + DA+ R + +V GGG + S+ L+ ++ +
Sbjct: 379 IRVGGATEVEVKERKDRVDDAMHATRAAVE-EGIVPGGGVALLRASEQLKGI-KTKNDDQ 436
Query: 175 QLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQK 210
+ + V KA RQ++ NAG D + I+ K+ +K
Sbjct: 437 KTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEK 472
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 29.2 bits (66), Expect = 1.9
Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Query: 127 ETERSLHDAIMIVRRTIRNH----AVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVA 182
E LH I V +A A+ MEL ALR Y R G ++L
Sbjct: 655 EDRWLLHRTIKKVTEDFEARQTFNTAIA---AL-MELLNALRKYLRRTEGDRKVL----R 706
Query: 183 KAFEVIPRQLS 193
+A E R L+
Sbjct: 707 EALETWVRLLA 717
>gnl|CDD|226471 COG3962, COG3962, Acetolactate synthase [Amino acid transport and
metabolism].
Length = 617
Score = 28.1 bits (63), Expect = 4.1
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 128 TERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 167
ER L DA +++ + +VAGGG + +ALR ++
Sbjct: 215 DERELADAAALIKSA-KKPLIVAGGGVLYSGAREALRAFA 253
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional.
Length = 600
Score = 28.0 bits (62), Expect = 4.7
Identities = 13/57 (22%), Positives = 33/57 (57%)
Query: 2 GDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSD 58
GDGTT+ V+LA ++ + V G +P + + + K ++++ +++ +++ S+
Sbjct: 141 GDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDSE 197
>gnl|CDD|225643 COG3101, COG3101, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 180
Score = 27.5 bits (61), Expect = 4.9
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 97 LDDLFNVFSGCKNARTCTIIVRGGAEQ-FLEETERSLHDAIMIVR 140
+ L +F+ C T +V+G E +L E + I+
Sbjct: 5 YEQLIEIFNQCFADEYNTRLVKGDDEPIYLPADEEVPYHRIVFAH 49
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase
Fab1. Fab1p is important for vacuole size regulation,
presumably by modulating PtdIns(3,5)P2 effector
activity. In the human homolog p235/PIKfyve deletion of
this domain leads to loss of catalytic activity. However
no exact function this domain has been defined. In
general, chaperonins are involved in productive folding
of proteins.
Length = 261
Score = 27.6 bits (62), Expect = 5.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 104 FSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIV 139
F GC CTI++RGG + L++ +R + +
Sbjct: 212 FEGCPKELGCTILLRGGDLEELKKVKRVVEFMVFAA 247
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 27.3 bits (61), Expect = 6.0
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 127 ETERSLHDAIMIVR-RTIRNHAVVAGGGAIEMELSKALRDY 166
T R + D+ I+ + VV GGG I +EL+ AL
Sbjct: 124 ATLRGVIDSDEILELLELPKRVVVVGGGYIGLELAAALAKL 164
>gnl|CDD|183049 PRK11240, PRK11240, penicillin-binding protein 1C; Provisional.
Length = 772
Score = 27.7 bits (62), Expect = 6.2
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 143 IRNHAVVAGGGAIEMELSKALRDYSRSIAGK 173
+ + V++GG + M++++ L + R+ GK
Sbjct: 105 LTSGRVISGGSTLTMQVARLLDPHPRTFGGK 135
>gnl|CDD|221025 pfam11202, DUF2983, Protein of unknown function (DUF2983). This
bacterial family of proteins has no known function.
Length = 353
Score = 27.5 bits (62), Expect = 6.3
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 151 GGGAIEMELSKALRDYSRSI 170
G GAI ELS+AL+D++R
Sbjct: 149 GKGAITRELSRALKDFNRRP 168
>gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases. L-lactate
dehydrogenases (LDH) are tetrameric enzymes catalyzing
the last step of glycolysis in which pyruvate is
converted to L-lactate. This subgroup is composed of
some bacterial LDHs from firmicutes,
gammaproteobacteria, and actinobacteria. Vertebrate LDHs
are non-allosteric, but some bacterial LDHs are
activated by an allosteric effector such as
fructose-1,6-bisphosphate. LDHs are part of the
NAD(P)-binding Rossmann fold superfamily, which includes
a wide variety of protein families including the
NAD(P)-binding domains of alcohol dehydrogenases,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenase, aminoacid
dehydrogenases, repressor rex, and NAD-binding potassium
channel domains, among others.
Length = 307
Score = 26.9 bits (60), Expect = 8.0
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 114 TIIVRGGAEQFL-----EETERSLHDAIMIVRRTIR 144
T+I G E+ L E LH + +R TI
Sbjct: 272 TVIGAKGIERVLEIPLDEWELEKLHKSAKAIRETIE 307
>gnl|CDD|188994 cd06455, M3A_TOP, Peptidase M3 Thimet oligopeptidase (TOP) also
includes neurolysin. Peptidase M3 Thimet oligopeptidase
(TOP; PZ-peptidase; endo-oligopeptidase A; endopeptidase
24.15; soluble metallo-endopeptidase; EC 3.4.24.15)
family also includes neurolysin (endopeptidase 24.16,
microsomal endopeptidase, mitochondrial oligopeptidase
M, neurotensin endopeptidase, soluble angiotensin
II-binding protein, thimet oligopeptidase II) which
hydrolyzes oligopeptides such as neurotensin, bradykinin
and dynorphin A. TOP and neurolysin are neuropeptidases
expressed abundantly in the testis, but also found in
the liver, lung and kidney. They are involved in the
metabolism of neuropeptides under 20 amino acid residues
long and cleave most bioactive peptides at the same
sites, but recognize different positions on some
naturally occurring and synthetic peptides; they cleave
at distinct sites on the 13-residue bioactive peptide
neurotensin, which modulates central dopaminergic and
cholinergic circuits. TOP has been shown to degrade
peptides released by the proteasome, limiting the extent
of antigen presentation by major histocompatibility
complex class I molecules, and has been associated with
amyloid protein precursor processing.
Length = 637
Score = 27.1 bits (61), Expect = 8.5
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 19/58 (32%)
Query: 27 VHPRIVIKAVRKATSMALQKIDELAVKI----------------QKSDSGEYRGLLEK 68
V P K VR A++ A QK+DE +V++ + E R LLE+
Sbjct: 55 VSPD---KEVRDASTEAEQKLDEFSVELSMREDVYRALKAVDEKNEELDPETRRLLER 109
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.366
Gapped
Lambda K H
0.267 0.0849 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,098,143
Number of extensions: 1072018
Number of successful extensions: 1130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1106
Number of HSP's successfully gapped: 93
Length of query: 219
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 126
Effective length of database: 6,812,680
Effective search space: 858397680
Effective search space used: 858397680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.5 bits)