RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17073
(219 letters)
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Length = 513
Score = 199 bits (509), Expect = 1e-61
Identities = 43/117 (36%), Positives = 74/117 (63%)
Query: 98 DDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEM 157
+D FSG CTI++RG +Q L+E ERSLHDA+ ++ +T+++ V GGG EM
Sbjct: 343 EDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEM 402
Query: 158 ELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQG 214
++ A+ + GKE + + + AKA ++P ++DNAG+D+ +++ +LR H++G
Sbjct: 403 LMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEG 459
Score = 133 bits (338), Expect = 6e-37
Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
VGDGTTSV +LA E+L++ + + + +HP+ +I R+AT A Q + AV +
Sbjct: 82 VGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSDEV- 140
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLFNV 103
++R L A T LSSKL+ K F+K+ V+AV+ L N+
Sbjct: 141 KFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSGNL 183
>3aq1_B Thermosome subunit; group II chaperonin, protein folding,
chaperone; 2.75A {Methanococcoides burtonii}
Length = 500
Score = 197 bits (504), Expect = 4e-61
Identities = 43/117 (36%), Positives = 74/117 (63%)
Query: 98 DDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEM 157
+GC+N++ T+++ GG E ++ + +L+DA+ +V I + VV GGG+ E+
Sbjct: 308 GGKMTYVTGCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEV 367
Query: 158 ELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQG 214
ELS L +Y+ ++ G+EQL + A+A EVIP L++NAG D +I+ +LR +H +G
Sbjct: 368 ELSLRLSEYASTLKGREQLAVSKFAEALEVIPVALAENAGLDPIDIMVELRSQHEKG 424
Score = 131 bits (332), Expect = 4e-36
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
VGDGTT+ +L+GE+L + + + +GVH I+ + R A + ++ + + I D
Sbjct: 43 VGDGTTTAAVLSGELLSKAEELIMKGVHSTIISEGYRHAAEKCREILETITIAISPDD-- 100
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD 99
L K A TA++ K K S + V AV S+ +
Sbjct: 101 --EAALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVE 137
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b*
Length = 527
Score = 198 bits (505), Expect = 5e-61
Identities = 50/117 (42%), Positives = 75/117 (64%)
Query: 98 DDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEM 157
+ F FSGCK CTI++RG +Q L+E ERSLHDA+ ++ +T + V GGG EM
Sbjct: 350 EQPFLKFSGCKAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEM 409
Query: 158 ELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQG 214
+SKA+ +++I GK+ L + A A+A +P L+DNAGFD++ +++KLR G
Sbjct: 410 VMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNG 466
Score = 129 bits (327), Expect = 3e-35
Identities = 34/104 (32%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEG-VHPRIVIKAVRKATSMALQKIDELAVKIQKSDS 59
VGDGTTSV +L+ E+L++ + +++ +HP+ +I+ R A++ AL + + AV +
Sbjct: 88 VGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKT 147
Query: 60 GEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLFNV 103
+R L A T LSSK++ Q K F+++ +A++ L N+
Sbjct: 148 -MFREDLIHIAKTTLSSKILSQDKDHFAELATNAILRLKGSTNL 190
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 197 bits (504), Expect = 5e-61
Identities = 92/117 (78%), Positives = 104/117 (88%)
Query: 98 DDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEM 157
+ +N F+GC A+TCTII+RGGAEQF+EETERSLHDAIMIVRR I+N +VVAGGGAIEM
Sbjct: 346 GERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEM 405
Query: 158 ELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQG 214
ELSK LRDYSR+I GK+QLLIGA AKA E+IPRQL DNAGFDATNILNKLR +HAQG
Sbjct: 406 ELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQG 462
Score = 139 bits (354), Expect = 4e-39
Identities = 72/103 (69%), Positives = 83/103 (80%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
VGDGTTSV LLA E LKQVKPYVEEG+HP+I+I+A R AT +A+ KI E+AV ++K D
Sbjct: 81 VGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKV 140
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLFNV 103
E R LLEKCA TALSSKLI QQK FF+KMVVDAVM LDDL +
Sbjct: 141 EQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDDLLQL 183
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g*
Length = 550
Score = 198 bits (505), Expect = 8e-61
Identities = 75/117 (64%), Positives = 96/117 (82%)
Query: 98 DDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEM 157
+ +N+F GC A+TCT+++RGGAEQ + E ERSLHDAIMIV+R ++N +VAGGGA EM
Sbjct: 359 SERYNLFQGCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEM 418
Query: 158 ELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQG 214
E+SK LRDYS++IAGK+Q++I A AKA EVIPRQL +NAGFDA ILNKLR H++G
Sbjct: 419 EVSKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSKG 475
Score = 133 bits (336), Expect = 2e-36
Identities = 57/99 (57%), Positives = 74/99 (74%), Gaps = 1/99 (1%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
VGDGTTSV +LAGE++K+ KP++EEG+ +++K RKA S+A++KI+ELAV I S
Sbjct: 94 VGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDITSEKS- 152
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD 99
R LLE+CA TA+SSKLIH FF KM VDAV+SLD
Sbjct: 153 SGRELLERCARTAMSSKLIHNNADFFVKMCVDAVLSLDR 191
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e*
Length = 562
Score = 198 bits (505), Expect = 8e-61
Identities = 37/124 (29%), Positives = 66/124 (53%)
Query: 94 VMSLDDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGG 153
+ D + K +T T VRG + ++E ER+LHD++ +VR +++ VV GGG
Sbjct: 385 FGTTKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGG 444
Query: 154 AIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQ 213
A E+ +S A+ + + G +Q A+A + IP L++N+G D L+ L+ K +
Sbjct: 445 AAEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLK 504
Query: 214 GRLK 217
++
Sbjct: 505 EKIS 508
Score = 135 bits (343), Expect = 2e-37
Identities = 33/100 (33%), Positives = 59/100 (59%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
+GDGTT VV+LA +L Q +++G+HP + +A +A+ K++E I S+
Sbjct: 115 IGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDE 174
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL 100
+R L + A T+L SK++ + F++M V+AV+++ D
Sbjct: 175 LFRDFLLRAAKTSLGSKIVSKDHDRFAEMAVEAVINVMDK 214
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_B* 1e0r_B
Length = 543
Score = 196 bits (501), Expect = 2e-60
Identities = 50/117 (42%), Positives = 74/117 (63%)
Query: 98 DDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEM 157
+D +GCKN + +I+VRG E ++E ERS+ D++ +V + + A AGGGA
Sbjct: 355 EDYMTFVTGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAA 414
Query: 158 ELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQG 214
E++ LR Y++ I G++QL I A A E IPR L++NAG D +IL KLR +HA+G
Sbjct: 415 EIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKG 471
Score = 131 bits (332), Expect = 6e-36
Identities = 35/100 (35%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
VGDGTT+ V++AG +L+Q + + + VHP ++ + R A+ A + IDE++ KI +
Sbjct: 91 VGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADE-- 148
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL 100
+ LL K A T+L+SK K +++ +AV S+ +L
Sbjct: 149 --KALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAEL 186
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 529
Score = 196 bits (500), Expect = 2e-60
Identities = 45/117 (38%), Positives = 71/117 (60%)
Query: 98 DDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEM 157
DD + K + ++I+RG + +E ERSLHDA+ +V+R + + +VV GGGA+E
Sbjct: 352 DDELILIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEA 411
Query: 158 ELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQG 214
LS L +Y+ S+ +EQL I A++ VIP L+ NA D+T+++ KLR H +
Sbjct: 412 ALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEA 468
Score = 124 bits (313), Expect = 3e-33
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 5/101 (4%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDE-LAVKIQKSDS 59
VGDGTTSVV++A E+LK V++ +HP VI R A A++ I E L + +
Sbjct: 80 VGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELG- 138
Query: 60 GEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL 100
R L A T++SSK+I FF+ +VVDAV+++
Sbjct: 139 ---RDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYT 176
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_A*
Length = 545
Score = 196 bits (500), Expect = 4e-60
Identities = 52/117 (44%), Positives = 73/117 (62%)
Query: 98 DDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEM 157
DD GCKN + +I++RGG + + E ER+L+DAI +V T + + GGGA+E
Sbjct: 354 DDRMTFVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEA 413
Query: 158 ELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQG 214
EL+ L Y+ S+ G+EQL I A AKA E+IPR L++NAG D N L KL+ +G
Sbjct: 414 ELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKG 470
Score = 126 bits (320), Expect = 3e-34
Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
VGDGTT+ V+L+GE+LKQ + +++GVHP ++ R A + A + IDE+A K
Sbjct: 92 VGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSTD---- 147
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL 100
L K A TALS K F + +VV AV ++ ++
Sbjct: 148 --DATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEV 185
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit
arrangement, acetylation, ATP-binding, chaperone,
cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Length = 515
Score = 195 bits (498), Expect = 4e-60
Identities = 43/121 (35%), Positives = 68/121 (56%)
Query: 94 VMSLDDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGG 153
+ D V CKN+R TI +RGG + +EE +RSLHDA+ ++R IR++ VV GGG
Sbjct: 342 FGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGG 401
Query: 154 AIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQ 213
A E+ + A+ + EQ + A A A EVIP L++N+G + + ++R + +
Sbjct: 402 AAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVK 461
Query: 214 G 214
Sbjct: 462 E 462
Score = 127 bits (322), Expect = 1e-34
Identities = 27/100 (27%), Positives = 58/100 (58%), Gaps = 2/100 (2%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
+GDGTT VV+LAG +L++ + ++ G+HP + +A +A++ +D+++ +
Sbjct: 80 IGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKN 139
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL 100
L + A T L SK+++ +++ V+AV+++ D+
Sbjct: 140 --TEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADM 177
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a*
Length = 559
Score = 196 bits (500), Expect = 5e-60
Identities = 43/117 (36%), Positives = 70/117 (59%)
Query: 98 DDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEM 157
DD + G + +II+RG + L+E ERSLHD++ +V+RT+ + VV GGG +E
Sbjct: 368 DDECILIKGTSKHSSSSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEA 427
Query: 158 ELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQG 214
L+ L +++ ++ +EQL I A A +IP+ L+ NA D++ ++ KLR HA
Sbjct: 428 ALNIYLDNFATTVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLRSYHAAS 484
Score = 124 bits (314), Expect = 2e-33
Identities = 37/100 (37%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
+GDGTTSVV++A E+LK+ V+ +HP +I R A A++ I+E+ S
Sbjct: 94 IGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLS---TSVDT 150
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL 100
+ L A T++SSK+I FFS MVVDA++++
Sbjct: 151 LGKETLINIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQ 190
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 194 bits (496), Expect = 1e-59
Identities = 48/120 (40%), Positives = 72/120 (60%)
Query: 98 DDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEM 157
D+ F + CK+ + CTI++RG +++ L E ER+L DA+ + R + + +V GGGA EM
Sbjct: 345 DEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEM 404
Query: 158 ELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGRLK 217
++ AL + S+++ G EQ AVA+A EVIPR L N G +L LR KH Q +
Sbjct: 405 AVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCE 464
Score = 132 bits (334), Expect = 2e-36
Identities = 29/99 (29%), Positives = 58/99 (58%), Gaps = 4/99 (4%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
VGDGTTSV++LAGE+L + ++E+ +HP +VI A RKA + + ++++ + S+
Sbjct: 79 VGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDTSN-- 136
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD 99
R + +++++K+I + + +DAV ++
Sbjct: 137 --RDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQF 173
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II
chaperonin, binding, chaperone; HET: ANP; 2.24A
{Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A*
3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A*
3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Length = 543
Score = 193 bits (494), Expect = 3e-59
Identities = 51/116 (43%), Positives = 74/116 (63%)
Query: 98 DDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEM 157
D CK+ + T+++RG E +EE R++ DA+ +V TI + +V+GGG+ E+
Sbjct: 350 GDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEV 409
Query: 158 ELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQ 213
ELS LR+Y+ I+G+EQL + A A A EVIPR L++NAG DA IL K+R HA
Sbjct: 410 ELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHAS 465
Score = 130 bits (329), Expect = 2e-35
Identities = 31/99 (31%), Positives = 61/99 (61%), Gaps = 4/99 (4%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
VGDGTT+ V++AGE+L++ + +++ VHP IV+K + A A + + +A ++ D
Sbjct: 89 VGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQD-- 146
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD 99
+ +L K A T+++ K + K ++++V+AV ++ D
Sbjct: 147 --KEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVD 183
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A
{Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1q2v_A* 1q3s_A* 1q3r_A
Length = 548
Score = 193 bits (493), Expect = 4e-59
Identities = 44/117 (37%), Positives = 71/117 (60%)
Query: 98 DDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEM 157
+ GCKN + TI++RGG E ++E ER+L DA+ +V+ + + AV+ GGA E+
Sbjct: 357 GENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEI 416
Query: 158 ELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQG 214
EL+ L +Y++ + GKE L I A A ++IP+ L++NAG D +L K+ +H
Sbjct: 417 ELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNR 473
Score = 132 bits (335), Expect = 2e-36
Identities = 31/99 (31%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
GDGTT+ V++AGE+L++ + +++ +HP I+ K A A + +DE+A+++ D
Sbjct: 93 AGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPDD-- 150
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD 99
L K AAT+++ K K +K+ V+AV + +
Sbjct: 151 --EETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAE 187
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone,
NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Length = 553
Score = 193 bits (492), Expect = 7e-59
Identities = 49/117 (41%), Positives = 74/117 (63%)
Query: 98 DDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEM 157
+D G KN ++ +I++RGG E+ ++ETER+L DA+ V I++ +AGGGA+E+
Sbjct: 364 EDKMVFVEGAKNPKSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAVEI 423
Query: 158 ELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQG 214
E++K LR Y+ + GKEQL + A A A E + L +NAGFD ++L KLR H
Sbjct: 424 EIAKKLRKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHENE 480
Score = 129 bits (328), Expect = 2e-35
Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
DGT + V+ +GE++K+ + + + VHP I+I +KA +ALQ I ELA + +D
Sbjct: 100 TADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTVSIND-- 157
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLFN 102
LL K A T+LSSK + + + + +VV AV + +L
Sbjct: 158 --TDLLRKIAMTSLSSKAVAGAREYIADIVVKAVTQVAELRG 197
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 518
Score = 190 bits (485), Expect = 3e-58
Identities = 50/118 (42%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
Query: 98 DDLFNVFSGCKN-ARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIE 156
+GC + +T TI+VRG + +EE ERS+HDA+ ++R ++ A++AGGGA E
Sbjct: 349 SGKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPE 408
Query: 157 MELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQG 214
+EL+ L +YSR+++G E I A A A EVIP L++NAG + + + +LR +HAQG
Sbjct: 409 IELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQG 466
Score = 129 bits (328), Expect = 2e-35
Identities = 36/99 (36%), Positives = 60/99 (60%), Gaps = 4/99 (4%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
GDGTTSVV++AG +L +++G+HP I+ ++ +KA ++ + +++ ++ SD
Sbjct: 81 AGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELSD-- 138
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD 99
R L AAT+L+SK++ Q S M VDAVM + D
Sbjct: 139 --RETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVID 175
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d*
Length = 528
Score = 189 bits (482), Expect = 1e-57
Identities = 44/128 (34%), Positives = 76/128 (59%), Gaps = 3/128 (2%)
Query: 90 VVDAVMSLDDLFNVFSGCKNA---RTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNH 146
+V+ + S +G +N T ++++RG ++ETERSLHDA+ ++R ++
Sbjct: 349 LVEEIDSDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKER 408
Query: 147 AVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNK 206
++AGGGA E+E+S+ L +RS+ G + + A A EVIP L++NAG ++ ++ +
Sbjct: 409 GLIAGGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTE 468
Query: 207 LRQKHAQG 214
LR KH G
Sbjct: 469 LRSKHENG 476
Score = 131 bits (331), Expect = 8e-36
Identities = 34/100 (34%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
GDGTTSVV+L G +L + + +G+HP I+ + + A ++ + E+ K+ SD
Sbjct: 89 AGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHKVSLSD-- 146
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL 100
R L + A+T+LSSK++ Q F + + VD+V+ + D
Sbjct: 147 --REQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKISDE 184
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 517
Score = 186 bits (475), Expect = 1e-56
Identities = 36/117 (30%), Positives = 68/117 (58%)
Query: 98 DDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEM 157
++ F C N R+ T++++G + L + + ++ D + V+ I + VV G GA+E+
Sbjct: 349 EEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEV 408
Query: 158 ELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQG 214
+++AL Y S+ G+ QL + A A A +IP+ L+ N+GFD L K++ +H++
Sbjct: 409 AMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSES 465
Score = 126 bits (320), Expect = 2e-34
Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
GDGTTS VL+ GE+LKQ Y+ EG+HPRI+ + A ALQ ++++ V +
Sbjct: 80 TGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEMD--- 136
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD 99
R L A T+L +K+ + ++ VVD+++++
Sbjct: 137 --RETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKK 173
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 512
Score = 185 bits (471), Expect = 3e-56
Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Query: 98 DDLFNVFSGCKN-ARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIE 156
D VF K TI++RG + +++ ER++ D + + R+ +V GGGA E
Sbjct: 341 DTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATE 400
Query: 157 MELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQG 214
+EL+K + Y + G EQ I A+AFE IPR L++N+G A +++KL H +G
Sbjct: 401 IELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEG 458
Score = 114 bits (288), Expect = 8e-30
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 15/132 (11%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
VGDGT V++ AG +L+ + + G+ VI+ A A + + +L K+
Sbjct: 81 VGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNL-- 138
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD---LFNVFSGCKNARTCTIIV 117
+ T++ SK + F +K++ A +S+ FNV N R C I+
Sbjct: 139 RDVDEVSSLLHTSVMSKQYG-NEVFLAKLIAQACVSIFPDSGHFNV----DNIRVCKIL- 192
Query: 118 RGGAEQFLEETE 129
G + +
Sbjct: 193 -GSG---VHSSS 200
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h*
Length = 568
Score = 181 bits (461), Expect = 3e-54
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 98 DDLFNVFS--GCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHA--VVAGGG 153
D VF + +RT TII+RG + L++ ER++ D + V+ ++ ++ G G
Sbjct: 365 GDRVTVFKQEQGEISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLPGAG 424
Query: 154 AIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQ 213
A E+EL + Y G QL I A AFEV+PR L++ AG D +L L H
Sbjct: 425 ATEIELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAAHNV 484
Query: 214 G 214
Sbjct: 485 T 485
Score = 114 bits (288), Expect = 8e-30
Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 13/134 (9%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
+GDGT V++LAGE+L + + G+ +I+ A L+++DE+ V +
Sbjct: 96 MGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDKND 155
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLFNVFSGC-----KNARTCTI 115
+ L K +SSK + S++V +AV + + + R I
Sbjct: 156 --KNELLKMIKPVISSKKYGSED-ILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKI 212
Query: 116 IVRGGAEQFLEETE 129
+ GG+ L +
Sbjct: 213 M--GGS---LSNST 221
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f*
Length = 546
Score = 180 bits (459), Expect = 4e-54
Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Query: 98 DDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEM 157
++ F + + ++CTI+++G L +T+ ++ D + V +++ ++ G GA +
Sbjct: 361 EEKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYI 420
Query: 158 ELSKALRDYSRS---IAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQG 214
LS+ LR + + GK + I A A+A VIP+ L N+GFD ++L + +
Sbjct: 421 ALSRYLRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDA 480
Query: 215 RLK 217
+
Sbjct: 481 QDS 483
Score = 128 bits (324), Expect = 8e-35
Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
GDGTT+VV L GE+L+Q +++EGVHPRI+ A +++ +DE + +
Sbjct: 87 TGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLSND 146
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL 100
R L + A ++L +K+ + +V DAV+S+ D
Sbjct: 147 --REFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSVYDA 184
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B
2bbn_B
Length = 590
Score = 133 bits (337), Expect = 1e-36
Identities = 52/164 (31%), Positives = 80/164 (48%), Gaps = 1/164 (0%)
Query: 52 VKIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL-DDLFNVFSGCKNA 110
K S SG EK + K + + +L + +
Sbjct: 371 CKEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALGSGHHHHHHHHGSG 430
Query: 111 RTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSI 170
+ CTI++RGG++ L E +R+L DA+ + R + + ++ GGGA EM +S L + ++ +
Sbjct: 431 KACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQL 490
Query: 171 AGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQG 214
G +Q AVA A E IPR L NAG D +L++LR KHAQG
Sbjct: 491 EGIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQG 534
Score = 127 bits (322), Expect = 2e-34
Identities = 32/101 (31%), Positives = 60/101 (59%), Gaps = 5/101 (4%)
Query: 1 VGDGTTSVVLLAGEILKQVKPY-VEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDS 59
VGDGTT+V++LAGEIL Q PY +E+ +HP I+I+A++KA + AL+ I +++ + +
Sbjct: 89 VGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSKPVDVEN- 147
Query: 60 GEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL 100
++K ++ +K + ++ +DAV ++
Sbjct: 148 ---DAAMKKLIQASIGTKYVIHWSEKMCELALDAVKTVRKD 185
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin,
tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Length = 178
Score = 48.7 bits (117), Expect = 1e-07
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 98 DDLFNVFSGCKNARTCTIIVRGGAEQFLEE 127
D+ F + CK+ + CTI++RG +
Sbjct: 149 DEYFTFITDCKDPKACTILLRGASHHHHHH 178
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 7e-06
Identities = 39/238 (16%), Positives = 76/238 (31%), Gaps = 66/238 (27%)
Query: 7 SVVLLAGEILKQVKPYV----EEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEY 62
S L+ + Q+ YV G P + ++ AT + + AV I ++DS E
Sbjct: 237 SCPLIG---VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV--TAVAIAETDSWES 291
Query: 63 RGLLEKCAATALSSKLIH-----QQKGFFSKMVVDAVMSLDDLFNVFSGCKNARTCTIIV 117
A++ L + + + + D L N + + +
Sbjct: 292 ---FFVSVRKAITV-LFFIGVRCYE--AYPNTSLPPSILEDSLEN---NEGVP-SPMLSI 341
Query: 118 RG----GAEQFLEETERSL--HDAIMIVRRTIRNHAVVAG------GGAIEMELSKALRD 165
+ ++ +T L + I + VV+G G L+ LR
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG------LNLTLRK 395
Query: 166 YSRSIAGKEQ----------------LLIGA------VAKAFEVIPRQL-SDNAGFDA 200
+G +Q L + + + A ++I + L +N F+A
Sbjct: 396 AKAP-SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA 452
Score = 40.0 bits (93), Expect = 5e-04
Identities = 48/247 (19%), Positives = 81/247 (32%), Gaps = 57/247 (23%)
Query: 3 DGTTSVVLLAGEILKQVKPYVEE---GVHPRIVIKAVRKATSMALQKID--ELAVKIQKS 57
D T+ L G+ L V VE G +++ + + + L+ D LA K+ +
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE 111
Query: 58 DSGE--YRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLFNVFSGCKNARTCTI 115
+ L K TA K S + L +F G
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG--------- 162
Query: 116 IVRGGAEQFLEETERSLHDA-IMIVRRTIRNHAVVAGGGAIEMELSKALRD----YSRSI 170
+G + + EE R L+ ++V I+ A EL + D +++ +
Sbjct: 163 --QGNTDDYFEEL-RDLYQTYHVLVGDLIKFSA------ETLSELIRTTLDAEKVFTQGL 213
Query: 171 AGKEQL--------------------LIGAVAKA-FEVIPRQLSDNAGFDATNILNKLR- 208
E L LIG + A + V + L GF + + L+
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL----GFTPGELRSYLKG 269
Query: 209 -QKHAQG 214
H+QG
Sbjct: 270 ATGHSQG 276
Score = 36.6 bits (84), Expect = 0.006
Identities = 40/257 (15%), Positives = 72/257 (28%), Gaps = 114/257 (44%)
Query: 3 DGTTSVVLLAGEILKQVKPYV---EEGV-------HPRIVIKAVRKATSMA-LQKIDELA 51
DG + EI + Y E+G+ P + A + +
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT------LMEKAAFEDLKSKG 1751
Query: 52 VKIQKSD-----S-GEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDA-VMSLDDLFNVF 104
+ I S GEY AL+S A VMS++
Sbjct: 1752 L-IPADATFAGHSLGEY---------AALASL---------------ADVMSIES----- 1781
Query: 105 SGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIR----------------NHAV 148
+ +V R N+ +
Sbjct: 1782 ------------------------------LVEVVF--YRGMTMQVAVPRDELGRSNYGM 1809
Query: 149 VA-GGGAIEMELSK-ALRDYSRSIAGKEQLLIGAVAKAFEVIPRQ--LS-DNAGFD-ATN 202
+A G + S+ AL+ + + L+ V + V +Q + D D TN
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV--NYNVENQQYVAAGDLRALDTVTN 1867
Query: 203 ILNKLRQKHAQGRLKIL 219
+LN ++ + ++ I+
Sbjct: 1868 VLNFIKLQ----KIDII 1880
Score = 28.1 bits (62), Expect = 3.1
Identities = 6/46 (13%), Positives = 17/46 (36%), Gaps = 9/46 (19%)
Query: 4 GTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDE 49
G + +L +K + I + S++L++++
Sbjct: 1857 GDLRALDTVTNVLNFIK------LQK---IDIIELQKSLSLEEVEG 1893
Score = 26.9 bits (59), Expect = 7.3
Identities = 9/48 (18%), Positives = 13/48 (27%), Gaps = 17/48 (35%)
Query: 157 MELSKALRDYSRSIAGKEQLLIGAVAKA-FEVIPRQLSDNAGFDATNI 203
M+L Y S A+ + D GF +I
Sbjct: 1633 MDL------YKTS----------KAAQDVWNRADNHFKDTYGFSILDI 1664
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding,
ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Length = 543
Score = 42.9 bits (102), Expect = 3e-05
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 148 VVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKL 207
+V GGG + A+ + + + G E V +A E RQ+++NAG++ + I+ ++
Sbjct: 409 IVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQI 468
Query: 208 RQK 210
+
Sbjct: 469 LAE 471
Score = 31.7 bits (73), Expect = 0.18
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 2 GDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDS 59
GDGTT+ +LA I+++ V G +P + + + KA A++KI LA+ ++ +
Sbjct: 85 GDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVEDRKA 142
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone;
HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1
c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A
1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A
3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A
3cau_A ...
Length = 547
Score = 39.1 bits (92), Expect = 8e-04
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 148 VVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKL 207
VVAGGG + ++ L D R + + I +A E RQ+ N G + + + N +
Sbjct: 410 VVAGGGVALIRVASKLADL-RGQNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTV 468
Query: 208 RQK 210
+
Sbjct: 469 KGG 471
Score = 31.4 bits (72), Expect = 0.21
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 2 GDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDS 59
GDGTT+ +LA I+ + V G++P + + + KA ++A++++ L+V S +
Sbjct: 85 GDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDSKA 142
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A
{Mycobacterium tuberculosis} PDB: 1sjp_A
Length = 546
Score = 38.3 bits (90), Expect = 0.001
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 148 VVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKL 207
+VAGGG ++ + L + + G E V A E +Q++ N+G + + K+
Sbjct: 409 IVAGGGVTLLQAAPTLDELK--LEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKV 466
Query: 208 RQK 210
R
Sbjct: 467 RNL 469
Score = 31.8 bits (73), Expect = 0.15
Identities = 13/58 (22%), Positives = 30/58 (51%)
Query: 2 GDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDS 59
GDGTT+ +LA ++++ V G +P + + + KA + + + A +++ +
Sbjct: 85 GDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVETKEQ 142
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1
Length = 545
Score = 38.3 bits (90), Expect = 0.001
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 148 VVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKL 207
+V GGG ++ +K L + I + +A E RQ+++NAG D + K+
Sbjct: 411 IVVGGGVALVQGAKVLEGL-SGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKV 469
Query: 208 RQ 209
R+
Sbjct: 470 RE 471
Score = 32.2 bits (74), Expect = 0.14
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 2 GDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDS 59
GDGTT+ +LA I+++ V G++P + + + AT+ ++ I A + S
Sbjct: 86 GDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSSE 143
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.014
Identities = 32/239 (13%), Positives = 69/239 (28%), Gaps = 72/239 (30%)
Query: 21 PYVEEGVHPRIV--IKAV-----------RKATSMALQKIDELAVKIQKSDSGEYRGLLE 67
P +PR + I + L I E ++ + + EYR + +
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA--EYRKMFD 376
Query: 68 KCA----ATALSSKLIHQQKGFFSKMVVDAVMSLDDLFNVFSGCK---NARTCTIIVRGG 120
+ + + + + L+ + ++ VM + + + +S + T +I
Sbjct: 377 RLSVFPPSAHIPTILL---SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI----- 428
Query: 121 AEQFLE-----ETERSLHDAIMIVRRTIRN---------------------HAVVAGGGA 154
+LE E E +LH +I+ + H
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 155 IEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLR--QKH 211
D+ R + K + + NA N L +L+ + +
Sbjct: 489 RMTLFRMVFLDF-RFLEQK-------------IRHDSTAWNASGSILNTLQQLKFYKPY 533
Score = 30.2 bits (67), Expect = 0.59
Identities = 32/214 (14%), Positives = 62/214 (28%), Gaps = 43/214 (20%)
Query: 6 TSVVLLAGEIL-KQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSGEYRG 64
+++L ++ V +V K + S+ ++ E + I Y
Sbjct: 388 PTILL---SLIWFDVIKSDVM----VVVNKLHKY--SLVEKQPKESTISIP----SIYLE 434
Query: 65 LLEKCAA-TALSSKLIHQ---QKGFFSKMVVDAVMSLDDLFNVFSG--CKNARTCTIIVR 118
L K AL ++ K F S ++ LD F G KN
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIP--PYLDQYFYSHIGHHLKNIEH------ 486
Query: 119 GGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLI 178
E+ L + + IR+ + + + L+ Y I +
Sbjct: 487 --PERMTLFRMVFLDFRFL--EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND---- 538
Query: 179 GAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHA 212
+E + + D N+ + K+
Sbjct: 539 ----PKYERLVNAILDFLPKIEENL---ICSKYT 565
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.097
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 5/24 (20%)
Query: 16 LKQV----KPYVEEGVHPRIVIKA 35
LK++ K Y ++ P + IKA
Sbjct: 22 LKKLQASLKLYADDSA-PALAIKA 44
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 30.2 bits (69), Expect = 0.58
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 15/90 (16%)
Query: 130 RSLHDAIMIVRRTIRN---HAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFE 186
DA+ I + + V+ GGG I +E+++A GK +I
Sbjct: 131 DLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAA-----QGKNVTMI-------V 178
Query: 187 VIPRQLSDNAGFDATNILNKLRQKHAQGRL 216
R L + + T+IL + +KH RL
Sbjct: 179 RGERVLRRSFDKEVTDILEEKLKKHVNLRL 208
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 29.0 bits (66), Expect = 1.3
Identities = 11/51 (21%), Positives = 15/51 (29%), Gaps = 8/51 (15%)
Query: 130 RSLHDAIMIVRRTIRN--HAVVAGGGAIEMELSKALRDYSRSIAGKEQLLI 178
+ L A+ + N V G G I ME L K +
Sbjct: 132 KFLSGALAA-VPLLENSQTVAVIGAGPIGMEAIDFLVK-----MKKTVHVF 176
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 29.0 bits (66), Expect = 1.3
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 130 RSLHDAIMIVRRTIRN---HAVVAGGGAIEMELSKALRDYSRSIAGKEQLLI 178
R+L D I + N +V G G + +E+ + L + G LI
Sbjct: 131 RNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYE-----RGLHPTLI 177
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 28.7 bits (65), Expect = 1.6
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 130 RSLHDAIMIVRRTIRN---HAVVAGGGAIEMELSKALRD 165
R++ D I++ N HA V GGG I +E+ ++L
Sbjct: 134 RNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHH 172
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 28.6 bits (65), Expect = 1.7
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 130 RSLHDAIMIVRRTIRN---HAVVAGGGAIEMELSKALRDYSRSIAGKEQLLI 178
+++ DA I++ N + GGGAI +E+++ + GK+ +I
Sbjct: 169 KTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVE-----LGKKVRMI 215
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 28.7 bits (65), Expect = 1.8
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 15/85 (17%)
Query: 130 RSLHDAIMIVRRTIRN---HAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFE 186
+ ++ ++ + V G G I +EL++A + GKE +LI +
Sbjct: 177 KLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQR-----KGKEVVLI-------D 224
Query: 187 VIPRQLSDNAGFDATNILNKLRQKH 211
V+ L+ D T+++ K ++H
Sbjct: 225 VVDTCLAGYYDRDLTDLMAKNMEEH 249
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 28.6 bits (65), Expect = 1.9
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 130 RSLHDAIMIVRRTIRN---HAVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFE 186
R AI + ++T+ + VV G G I +E ++A AGK+ +I +
Sbjct: 132 RGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAK-----AGKKVTVI-------D 179
Query: 187 VIPRQLSDNAGFDATNILNKLRQKH 211
++ R L + T++L + + +
Sbjct: 180 ILDRPLGVYLDKEFTDVLTEEMEAN 204
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 28.3 bits (64), Expect = 1.9
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 130 RSLHDAIMIVRRTIRN---HAVVAGGGAIEMELSKALRD 165
R++ D I HA V GGG I +E+ + LR+
Sbjct: 170 RNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRE 208
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 28.3 bits (64), Expect = 2.0
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 130 RSLHDAIMIVRRTIRN---HAVVAGGGAIEMELSKALRD 165
+L +A + AV+ GGG I +E++ +L D
Sbjct: 142 TNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLAD 180
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 28.2 bits (64), Expect = 2.1
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 130 RSLHDAIMIVRRTIR-NHAVVAGGGAIEMELSKALRDYSRSIAGKEQLLI 178
++ +DA + + + G G I EL++A + LI
Sbjct: 134 KNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSN-----QNYNVNLI 178
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 28.2 bits (63), Expect = 2.4
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 130 RSLHDAIMIVRRTIRN-HAVVAGGGAIEMELSKALRDYSRS 169
R + D + + + + GGG + EL+ AL +R+
Sbjct: 165 RKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARA 205
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 27.1 bits (61), Expect = 4.8
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 130 RSLHDAIMIVRRTIRN--HAVVAGGGAIEMELSKALRD 165
R++ DA I + +I N A++ GGG I +EL+ L +
Sbjct: 128 RTIFDADRI-KESIENSGEAIIIGGGFIGLELAGNLAE 164
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 26.8 bits (60), Expect = 5.5
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 130 RSLHDAIMIVRRTIRN-HAVVAGGGAIEMELSKALRD 165
S DA+ I A + GGG + +EL++A+ D
Sbjct: 131 YSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIID 167
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.366
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,301,356
Number of extensions: 205929
Number of successful extensions: 669
Number of sequences better than 10.0: 1
Number of HSP's gapped: 637
Number of HSP's successfully gapped: 91
Length of query: 219
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 129
Effective length of database: 4,188,903
Effective search space: 540368487
Effective search space used: 540368487
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)