RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17073
(219 letters)
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 243
Score = 59.7 bits (144), Expect = 1e-11
Identities = 34/69 (49%), Positives = 45/69 (65%)
Query: 147 AVVAGGGAIEMELSKALRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNK 206
A AGGGA E++ LR Y++ I G++QL I A A E IPR L++NAG D +IL K
Sbjct: 126 AYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLK 185
Query: 207 LRQKHAQGR 215
LR +HA+G
Sbjct: 186 LRAEHAKGN 194
Score = 43.5 bits (102), Expect = 6e-06
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
VGDGTT+ V++AG +L+Q + + + VHP ++ + R A+ A + IDE++ KI + G
Sbjct: 72 VGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIAYAAGG 131
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
2303]}
Length = 245
Score = 56.7 bits (136), Expect = 2e-10
Identities = 41/116 (35%), Positives = 62/116 (53%)
Query: 103 VFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKA 162
V SG + T++ +G + R + + I + + GGGA+E EL+
Sbjct: 85 VLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSFLWGGGAVEAELAMR 144
Query: 163 LRDYSRSIAGKEQLLIGAVAKAFEVIPRQLSDNAGFDATNILNKLRQKHAQGRLKI 218
L Y+ S+ G+EQL I A AKA E+IPR L++NAG D N L KL+ +GR+ +
Sbjct: 145 LAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISV 200
Score = 47.8 bits (113), Expect = 2e-07
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
VGDGTT+ V+L+GE+LKQ + +++GVHP ++ R A + A + IDE + + G
Sbjct: 76 VGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDE--IAEKSFLWG 133
Query: 61 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLFNVFSGCKNARTCTII 116
E A + + ++ + A+ + +G T +
Sbjct: 134 GGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKL 189
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain
{Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
79679]}
Length = 107
Score = 47.2 bits (112), Expect = 6e-08
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 18/101 (17%)
Query: 63 RGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL---------DDLFNV---------F 104
L K AAT+++ K K +K+ V+AV + DL N+
Sbjct: 6 EETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGV 65
Query: 105 SGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRN 145
+ + TI++RGG E ++E ER+L DA+ +V+ + +
Sbjct: 66 EESELVKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMED 106
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain
{Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
2303]}
Length = 105
Score = 44.1 bits (104), Expect = 7e-07
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 18/99 (18%)
Query: 63 RGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLD---------DLFNV---------F 104
L K A TALS K F + +VV AV ++ D N+
Sbjct: 3 DATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSV 62
Query: 105 SGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTI 143
+ + +I++RGG + + E ER+L+DAI +V T
Sbjct: 63 NDTQFISAVSILIRGGTDHVVSEVERALNDAIRVVAITK 101
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 107
Score = 41.8 bits (98), Expect = 6e-06
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 63 RGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD 99
+ LL K A T+L+SK K +++ +AV S+ +
Sbjct: 5 KALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAE 41
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus),
gamma chain [TaxId: 10090]}
Length = 168
Score = 39.3 bits (91), Expect = 9e-05
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 69 CAATALSS-KLIHQQKGFFSKMVVDAVMSLDDLFNVFSGCKNARTCTIIVRG 119
C A +S + + + +++ D+ F + CK+ + CTI++RG
Sbjct: 117 CGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRG 168
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain
{Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
Length = 180
Score = 36.3 bits (83), Expect = 0.001
Identities = 13/63 (20%), Positives = 28/63 (44%)
Query: 1 VGDGTTSVVLLAGEILKQVKPYVEEGVHPRIVIKAVRKATSMALQKIDELAVKIQKSDSG 60
GDGTT+ +LA ++++ V G +P + + + KA + + + A +
Sbjct: 22 AGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKIVAGGGVT 81
Query: 61 EYR 63
+
Sbjct: 82 LLQ 84
>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase
{Pseudomonas putida [TaxId: 303]}
Length = 185
Score = 26.3 bits (56), Expect = 2.5
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 144 RNHAVVAGGGAIEMELSKALRD 165
++ V+ G G +E++ LR
Sbjct: 3 NDNVVIVGTGLAGVEVAFGLRA 24
>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase
{Pyrococcus furiosus [TaxId: 2261]}
Length = 167
Score = 25.8 bits (55), Expect = 3.3
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 145 NHAVVAGGGAIEMELSKALRD 165
+ V+ G G EL+K L
Sbjct: 1 SKVVIVGNGPGGFELAKQLSQ 21
>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M
oxidoreductase/carboxylase {Xanthobacter sp., py2
[TaxId: 35809]}
Length = 121
Score = 25.3 bits (54), Expect = 4.0
Identities = 5/22 (22%), Positives = 7/22 (31%)
Query: 145 NHAVVAGGGAIEMELSKALRDY 166
+ VV GG +E
Sbjct: 23 STVVVVGGSKTAVEYGCFFNAT 44
>d1u1ha1 c.1.22.2 (A:2-395)
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase MetE {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 394
Score = 25.7 bits (56), Expect = 5.3
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 36 VRKATSMALQKIDELAVKIQKSDSGEYRGLLE---KCAATALSSKLIH 80
++ + A QK+ E+ + + L A+ SS +
Sbjct: 346 IKSWMAFAAQKVVEVNALAKALAGQKDEALFSANAAALASRRSSPRVT 393
>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus
faecalis [TaxId: 1351]}
Length = 198
Score = 24.8 bits (52), Expect = 7.3
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 148 VVAGGGAIEMELSKALRDYSR 168
+V G E + L +
Sbjct: 4 IVLGSSHGGYEAVEELLNLHP 24
>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch
{Escherichia coli [TaxId: 562]}
Length = 153
Score = 24.4 bits (52), Expect = 8.4
Identities = 4/27 (14%), Positives = 12/27 (44%)
Query: 144 RNHAVVAGGGAIEMELSKALRDYSRSI 170
++H +V G + + L +++
Sbjct: 3 KDHFIVCGHSILAINTILQLNQRGQNV 29
>d1aopa3 d.134.1.1 (A:149-345) Sulfite reductase hemoprotein
(SiRHP), domains 2 and 4 {Escherichia coli [TaxId: 562]}
Length = 197
Score = 24.5 bits (53), Expect = 8.8
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 90 VVDAVMSLDDLFNVFSGCKNARTCTIIVRGGAEQFLEETERSL 132
V +AV++ + + KNA+T + R G E F E ER
Sbjct: 137 VAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRA 179
>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide
dehydrogenase, FCSD, flavin-binding subunit {Purple
phototrophic bacterium (Chromatium vinosum) [TaxId:
1049]}
Length = 186
Score = 24.4 bits (51), Expect = 9.9
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 146 HAVVAGGGAIEMELSKALRD 165
VV GGG +K ++
Sbjct: 4 KVVVVGGGTGGATAAKYIKL 23
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.366
Gapped
Lambda K H
0.267 0.0734 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 758,380
Number of extensions: 34091
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 26
Length of query: 219
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,281,736
Effective search space: 175597832
Effective search space used: 175597832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)