BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17074
(632 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 451 bits (1160), Expect = e-127, Method: Compositional matrix adjust.
Identities = 229/348 (65%), Positives = 259/348 (74%), Gaps = 53/348 (15%)
Query: 332 KEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLL 391
KEGT++SQG PQL+SNI+ACQ + +AVRTTLGPRGMDKLIVD GK+TISNDGATI+KLL
Sbjct: 1 KEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLL 60
Query: 392 DIVHPAAKTLVDIAKSQDAEI--------------------------------------- 412
D+VHPAAKTLVDIAKSQDAE+
Sbjct: 61 DVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTAT 120
Query: 413 --------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL 458
+K D E R LLEKCA TALSSKLI QQK FF+KMVVDAVM LDDL
Sbjct: 121 QLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDDL 180
Query: 459 LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAE 518
L L MIGIKKV GGALE+S LV GV+FKKTF+YAGFEMQPK Y NP IALLN+ELELKAE
Sbjct: 181 LQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAE 240
Query: 519 RDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMF 578
+DNAEIR+ +VE+YQ +VDAEW ILY+KL+KIH SGA+VVLSKLPIGDVATQYFADRDMF
Sbjct: 241 KDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMF 300
Query: 579 CAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
CAGRVPEEDLKRTM ACGG++ T+ + L+ VLG C VF+E QIG ER
Sbjct: 301 CAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGER 348
Score = 277 bits (709), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 126/164 (76%), Positives = 145/164 (88%)
Query: 48 DEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK 107
++YQ +VDAEW ILY+KL+KIH SGA+VVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK
Sbjct: 252 EDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK 311
Query: 108 RTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQ 167
RTM ACGG++ T+ + L+ VLG C VF+E QIG ER+N F+GC A+TCTII+RGGAEQ
Sbjct: 312 RTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQ 371
Query: 168 FLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
F+EETERSLHDAIMIVRR I+N +VVAGGGAIEMELSK LRDYS
Sbjct: 372 FMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYS 415
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/83 (80%), Positives = 76/83 (91%)
Query: 234 GFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHA 293
GFEMQPK Y NP IALLN+ELELKAE+DNAEIR+ +VE+YQ +VDAEW ILY+KL+KIH
Sbjct: 215 GFEMQPKKYHNPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHH 274
Query: 294 SGAQVVLSKLPIGDVATQYFADR 316
SGA+VVLSKLPIGDVATQYFADR
Sbjct: 275 SGAKVVLSKLPIGDVATQYFADR 297
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 372 bits (956), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/359 (52%), Positives = 248/359 (69%), Gaps = 53/359 (14%)
Query: 324 RQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISND 383
+ P I++LKEGT+ SQGK Q+ISNINAC AV +A++ TLGP G D LIV N K+TISND
Sbjct: 6 QTPTIVVLKEGTDASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISND 65
Query: 384 GATIMKLLDIVHPAAKTLVDIAKSQDA--------------EIQK--------------- 414
GATI+KLLD+VHPAAKTLVDI+++QDA E+ K
Sbjct: 66 GATILKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLI 125
Query: 415 -----------------------SDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDA 451
S+ R LLE+CA TA+SSKLIH FF KM VDA
Sbjct: 126 MKGYRKAVSLAVEKINELAVDITSEKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDA 185
Query: 452 VMSLD-DLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLN 510
V+SLD + L +IGIKK+ GGA+E+SL ++GV+FKKTF+YAGFE QPK + NPKI LN
Sbjct: 186 VLSLDRNDLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLN 245
Query: 511 IELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQ 570
+ELELKAE+DNAE+R++ VE+YQ +VDAEW++++EKL ++ +GA +VLSKLPIGD+ATQ
Sbjct: 246 VELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQ 305
Query: 571 YFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTL 629
+FADR++FCAGRV +D+ R ++A GG++ +T D+ LGTCA+F+E QIGSER L
Sbjct: 306 FFADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNL 364
Score = 232 bits (591), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 98/164 (59%), Positives = 135/164 (82%)
Query: 48 DEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK 107
++YQ +VDAEW++++EKL ++ +GA +VLSKLPIGD+ATQ+FADR++FCAGRV +D+
Sbjct: 265 EDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFADRNIFCAGRVSADDMN 324
Query: 108 RTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQ 167
R ++A GG++ +T D+ LGTCA+F+E QIGSER+N+F GC A+TCT+++RGGAEQ
Sbjct: 325 RVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGCPQAKTCTLLLRGGAEQ 384
Query: 168 FLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
+ E ERSLHDAIMIV+R ++N +VAGGGA EME+SK LRDYS
Sbjct: 385 VIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYS 428
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 54/83 (65%), Positives = 72/83 (86%)
Query: 234 GFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHA 293
GFE QPK + NPKI LN+ELELKAE+DNAE+R++ VE+YQ +VDAEW++++EKL ++
Sbjct: 228 GFEQQPKKFNNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEE 287
Query: 294 SGAQVVLSKLPIGDVATQYFADR 316
+GA +VLSKLPIGD+ATQ+FADR
Sbjct: 288 TGANIVLSKLPIGDLATQFFADR 310
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 185 bits (470), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 120/366 (32%), Positives = 197/366 (53%), Gaps = 61/366 (16%)
Query: 319 TSQVFRQPQ---ILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQN 375
T+ V P+ +++LKEG+ + GK + +NI A +AV +A+++T GPRGMDK++VD
Sbjct: 4 TATVATTPEGIPVIILKEGSSRTYGKEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSL 63
Query: 376 GKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAE---------------IQKSDSGEY 420
G TI+NDGATI+ +D+ HPAAK LV IAK QD E ++K++ Y
Sbjct: 64 GDITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLY 123
Query: 421 RG----------------------------------LLEKCAATALSSKLIHQQKGFFSK 446
+ LL K A T+LSSK + + + +
Sbjct: 124 KDVHPTIIISGYKKAEEVALQTIQELAQTVSINDTDLLRKIAMTSLSSKAVAGAREYIAD 183
Query: 447 MVVDAVMSLDDL------LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKT 500
+VV AV + +L + L+ I I K AGG++ D+ LV G+ K + G PK
Sbjct: 184 IVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGM---PKR 240
Query: 501 YKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLS 560
+N KIAL++ LE++ +AEIR++ + QK +D E ++ EK+DKI A+GA V++
Sbjct: 241 LENAKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIIC 300
Query: 561 KLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDER 620
+ I +VA Y A + + R + DL++ +A GG V++ ++++ LG ++ +ER
Sbjct: 301 QKGIDEVAQSYLAKKGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEER 360
Query: 621 QIGSER 626
++G ++
Sbjct: 361 KVGEDK 366
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 106/165 (64%)
Query: 47 PDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL 106
P + QK +D E ++ EK+DKI A+GA V++ + I +VA Y A + + R + DL
Sbjct: 269 PTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKKGVLAVRRAKKSDL 328
Query: 107 KRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAE 166
++ +A GG V++ ++++ LG ++ +ER++G ++ G KN ++ +I++RGG E
Sbjct: 329 EKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAKNPKSISILIRGGLE 388
Query: 167 QFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
+ ++ETER+L DA+ V I++ +AGGGA+E+E++K LR Y+
Sbjct: 389 RLVDETERALRDALGTVADVIKDGRAIAGGGAVEIEIAKKLRKYA 433
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%)
Query: 239 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV 298
PK +N KIAL++ LE++ +AEIR++ + QK +D E ++ EK+DKI A+GA V
Sbjct: 238 PKRLENAKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANV 297
Query: 299 VLSKLPIGDVATQYFADR 316
++ + I +VA Y A +
Sbjct: 298 IICQKGIDEVAQSYLAKK 315
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
Length = 545
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 120/358 (33%), Positives = 177/358 (49%), Gaps = 56/358 (15%)
Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
Q IL+LKEGT+ QGK +NI A +A+ DAVRTTLGP+GMDK++VD G ISNDG
Sbjct: 5 QVPILVLKEGTQREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDG 64
Query: 385 ATIMKLLDIVHPAAKTLVDIAKSQDAEIQKSD------SGE------------------- 419
ATI+K +D+ HP AK +V+++K+QD + SGE
Sbjct: 65 ATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVIS 124
Query: 420 --YR--------------------GLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD 457
YR L K A TALS K F + +VV AV ++ +
Sbjct: 125 NGYRLAVNEARKIIDEIAEKSTDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAE 184
Query: 458 ------LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511
++ I + K GG++ D+ + G+ K ++ P KN KIAL++
Sbjct: 185 VRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKM---PDVVKNAKIALIDS 241
Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQY 571
LE+K A++++ + Q ++ E + ++KI SGA VVL + I DVA Y
Sbjct: 242 ALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHY 301
Query: 572 FADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTL 629
A ++ RV + D+++ KA G ++T DL SVLG +ER+IG +R T
Sbjct: 302 LAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTF 359
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 134/266 (50%), Gaps = 10/266 (3%)
Query: 47 PDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL 106
P + Q ++ E + ++KI SGA VVL + I DVA Y A ++ RV + D+
Sbjct: 259 PSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDM 318
Query: 107 KRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAE 166
++ KA G ++T DL SVLG +ER+IG +R GCKN + +I++RGG +
Sbjct: 319 EKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNPKAVSILIRGGTD 378
Query: 167 QFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNS 226
+ E ER+L+DAI +V T + + GGGA+E EL+ L Y+ G +
Sbjct: 379 HVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYAN-----SVGGREQLA 433
Query: 227 FHAISPDGFEMQPKTY-KNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILY 285
A + E+ P+T +N I +N ++LKA+ + I + + V D + K +
Sbjct: 434 IEAFAK-ALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVV 492
Query: 286 EKLD-KIHA--SGAQVVLSKLPIGDV 308
+ L K HA S +V L I DV
Sbjct: 493 DPLRVKTHALESAVEVATMILRIDDV 518
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 239 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV 298
P KN KIAL++ LE+K A++++ + Q ++ E + ++KI SGA V
Sbjct: 228 PDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANV 287
Query: 299 VLSKLPIGDVATQYFA 314
VL + I DVA Y A
Sbjct: 288 VLCQKGIDDVAQHYLA 303
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 163 bits (412), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 181/356 (50%), Gaps = 59/356 (16%)
Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
QP I +LKEGT+ GK + NI A A+ ++VR++LGPRGMDK++VD G I+NDG
Sbjct: 5 QP-IFILKEGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDG 63
Query: 385 ATIMKLLDIVHPAAKTLVDIAKSQDA---------------------------------- 410
TI+K +D+ HPAAK +V+++K+QD+
Sbjct: 64 VTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVIS 123
Query: 411 ---------------EIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL 455
EI + + LL K A T+L+SK K +++ +AV S+
Sbjct: 124 EGYRMASEEAKRVIDEISTKIGADEKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSV 183
Query: 456 DDL------LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALL 509
+L + + I + K GGA++D+ L++G+ K + G P K+ KIALL
Sbjct: 184 AELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGM---PDVVKDAKIALL 240
Query: 510 NIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVAT 569
+ LE+K + +R++ QK + E +L E +DKI + GA VV+++ I D+A
Sbjct: 241 DAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQ 300
Query: 570 QYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSE 625
Y + ++ RV + D+ + KA G ++++T +++ S LGT ++ ++G +
Sbjct: 301 HYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGED 356
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 80/137 (58%)
Query: 47 PDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL 106
P QK + E +L E +DKI + GA VV+++ I D+A Y + ++ RV + D+
Sbjct: 260 PSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDM 319
Query: 107 KRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAE 166
+ KA G ++++T +++ S LGT ++ ++G + +GCKN + +I+VRG E
Sbjct: 320 DKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKNPKAVSILVRGETE 379
Query: 167 QFLEETERSLHDAIMIV 183
++E ERS+ D++ +V
Sbjct: 380 HVVDEMERSITDSLHVV 396
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 239 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV 298
P K+ KIALL+ LE+K + +R++ QK + E +L E +DKI + GA V
Sbjct: 229 PDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANV 288
Query: 299 VLSKLPIGDVATQYFA 314
V+++ I D+A Y +
Sbjct: 289 VITQKGIDDMAQHYLS 304
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 112/362 (30%), Positives = 176/362 (48%), Gaps = 61/362 (16%)
Query: 320 SQVFRQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKST 379
+Q+ QP +++L EGT+ G+ NI A + + + VRTTLGP+GMDK++VD G
Sbjct: 2 AQLSGQP-VVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIV 60
Query: 380 ISNDGATIMKLLDIVHPAAKTLVDIAKSQ--------------------------DAEIQ 413
++NDGATI+ +D+ HPAAK +V++AK+Q D I
Sbjct: 61 VTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIH 120
Query: 414 KS------------------------DSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVV 449
S D + LL K AAT+++ K K +K+ V
Sbjct: 121 PSIITKGYALAAEKAQEILDEIAIRVDPDDEETLL-KIAATSITGKNAESHKELLAKLAV 179
Query: 450 DAVMSLDD------LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKN 503
+AV + + ++ L+ I +K AG +E+S LV GV K + PK +N
Sbjct: 180 EAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRM---PKRVEN 236
Query: 504 PKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLP 563
KIAL+N LE+K +A+I + S ++ ++ E K+L + +D I +GA VV +
Sbjct: 237 AKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKG 296
Query: 564 IGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIG 623
I D+A Y A + RV + D+++ KA G ++T DL LG V +ER++
Sbjct: 297 IDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLA 356
Query: 624 SE 625
E
Sbjct: 357 GE 358
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 93/165 (56%)
Query: 47 PDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL 106
PD+ ++ E K+L + +D I +GA VV + I D+A Y A + RV + D+
Sbjct: 262 PDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDM 321
Query: 107 KRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAE 166
++ KA G ++T DL LG V +ER++ E GCKN + TI++RGG E
Sbjct: 322 EKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNPKAVTILIRGGTE 381
Query: 167 QFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
++E ER+L DA+ +V+ + + AV+ GGA E+EL+ L +Y+
Sbjct: 382 HVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYA 426
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 239 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV 298
PK +N KIAL+N LE+K +A+I + S ++ ++ E K+L + +D I +GA V
Sbjct: 231 PKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANV 290
Query: 299 VLSKLPIGDVATQYFA 314
V + I D+A Y A
Sbjct: 291 VFVQKGIDDLAQHYLA 306
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 111/362 (30%), Positives = 175/362 (48%), Gaps = 61/362 (16%)
Query: 320 SQVFRQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKST 379
+Q+ QP +++L EGT+ G+ NI A + + + VRTTLGP+GMDK++VD G
Sbjct: 2 AQLSGQP-VVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIV 60
Query: 380 ISNDGATIMKLLDIVHPAAKTLVDIAKSQ--------------------------DAEIQ 413
++ND ATI+ +D+ HPAAK +V++AK+Q D I
Sbjct: 61 VTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIH 120
Query: 414 KS------------------------DSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVV 449
S D + LL K AAT+++ K K +K+ V
Sbjct: 121 PSIITKGYALAAEKAQEILDEIAIRVDPDDEETLL-KIAATSITGKNAESHKELLAKLAV 179
Query: 450 DAVMSLDD------LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKN 503
+AV + + ++ L+ I +K AG +E+S LV GV K + PK +N
Sbjct: 180 EAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRM---PKRVEN 236
Query: 504 PKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLP 563
KIAL+N LE+K +A+I + S ++ ++ E K+L + +D I +GA VV +
Sbjct: 237 AKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKG 296
Query: 564 IGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIG 623
I D+A Y A + RV + D+++ KA G ++T DL LG V +ER++
Sbjct: 297 IDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLA 356
Query: 624 SE 625
E
Sbjct: 357 GE 358
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 93/165 (56%)
Query: 47 PDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL 106
PD+ ++ E K+L + +D I +GA VV + I D+A Y A + RV + D+
Sbjct: 262 PDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDM 321
Query: 107 KRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAE 166
++ KA G ++T DL LG V +ER++ E GCKN + TI++RGG E
Sbjct: 322 EKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNPKAVTILIRGGTE 381
Query: 167 QFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
++E ER+L DA+ +V+ + + AV+ GGA E+EL+ L +Y+
Sbjct: 382 HVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYA 426
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 239 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV 298
PK +N KIAL+N LE+K +A+I + S ++ ++ E K+L + +D I +GA V
Sbjct: 231 PKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANV 290
Query: 299 VLSKLPIGDVATQYFA 314
V + I D+A Y A
Sbjct: 291 VFVQKGIDDLAQHYLA 306
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 111/362 (30%), Positives = 175/362 (48%), Gaps = 61/362 (16%)
Query: 320 SQVFRQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKST 379
+Q+ QP +++L EGT+ G+ NI A + + + VRTTLGP+GMDK++VD G
Sbjct: 2 AQLSGQP-VVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIV 60
Query: 380 ISNDGATIMKLLDIVHPAAKTLVDIAKSQ--------------------------DAEIQ 413
++ND ATI+ +D+ HPAAK +V++AK+Q D I
Sbjct: 61 VTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIH 120
Query: 414 KS------------------------DSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVV 449
S D + LL K AAT+++ K K +K+ V
Sbjct: 121 PSIIIKGYALAAEKAQEILDEIAIRVDPDDEETLL-KIAATSITGKNAESHKELLAKLAV 179
Query: 450 DAVMSLDD------LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKN 503
+AV + + ++ L+ I +K AG +E+S LV GV K + PK +N
Sbjct: 180 EAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRM---PKRVEN 236
Query: 504 PKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLP 563
KIAL+N LE+K +A+I + S ++ ++ E K+L + +D I +GA VV +
Sbjct: 237 AKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKG 296
Query: 564 IGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIG 623
I D+A Y A + RV + D+++ KA G ++T DL LG V +ER++
Sbjct: 297 IDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLA 356
Query: 624 SE 625
E
Sbjct: 357 GE 358
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 93/165 (56%)
Query: 47 PDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL 106
PD+ ++ E K+L + +D I +GA VV + I D+A Y A + RV + D+
Sbjct: 262 PDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDM 321
Query: 107 KRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAE 166
++ KA G ++T DL LG V +ER++ E GCKN + TI++RGG E
Sbjct: 322 EKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNPKAVTILIRGGTE 381
Query: 167 QFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
++E ER+L DA+ +V+ + + AV+ GGA E+EL+ L +Y+
Sbjct: 382 HVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYA 426
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 239 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV 298
PK +N KIAL+N LE+K +A+I + S ++ ++ E K+L + +D I +GA V
Sbjct: 231 PKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANV 290
Query: 299 VLSKLPIGDVATQYFA 314
V + I D+A Y A
Sbjct: 291 VFVQKGIDDLAQHYLA 306
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
Length = 543
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/351 (29%), Positives = 176/351 (50%), Gaps = 57/351 (16%)
Query: 324 RQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISND 383
+QP +L E + G+ NI A + + + VR+TLGP+GMDK++VD G ++ND
Sbjct: 3 QQPGVL--PENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTND 60
Query: 384 GATIMKLLDIVHPAAKTLVDIAKSQDAEI------------------------------- 412
G TI++ + + HPAAK L+++AK+Q+ E+
Sbjct: 61 GVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIV 120
Query: 413 --------QKSD----------SGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMS 454
QK+ + + +L K A T+++ K + K ++++V+AV +
Sbjct: 121 VKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSA 180
Query: 455 LDD---LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511
+ D + ++I I+K +G +++D+ L+ GV K A PK + KIALLN
Sbjct: 181 VVDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQM---PKKVTDAKIALLNC 237
Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQY 571
+E+K +AEIR+ + + ++ E K+L + + +I ASGA V+ + I D+A Y
Sbjct: 238 AIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHY 297
Query: 572 FADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQI 622
A + A RV + D+++ KA G V+T DL+ LG + +ER+I
Sbjct: 298 LAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKI 348
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 95/165 (57%)
Query: 47 PDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL 106
P + + ++ E K+L + + +I ASGA V+ + I D+A Y A + A RV + D+
Sbjct: 255 PAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDM 314
Query: 107 KRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAE 166
++ KA G V+T DL+ LG + +ER+I + CK+ + T+++RG E
Sbjct: 315 EKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTE 374
Query: 167 QFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
+EE R++ DA+ +V TI + +V+GGG+ E+ELS LR+Y+
Sbjct: 375 HVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 419
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 239 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV 298
PK + KIALLN +E+K +AEIR+ + + ++ E K+L + + +I ASGA V
Sbjct: 224 PKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANV 283
Query: 299 VLSKLPIGDVATQYFA 314
+ + I D+A Y A
Sbjct: 284 LFCQKGIDDLAQHYLA 299
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
Length = 513
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/345 (28%), Positives = 173/345 (50%), Gaps = 55/345 (15%)
Query: 330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMK 389
+L E + G+ NI A + + + VR+TLGP+GMDK++VD G ++NDG TI++
Sbjct: 1 VLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILR 60
Query: 390 LLDIVHPAAKTLVDIAKSQDAEI------------------------------------- 412
+ + HPAAK L+++AK+Q+ E+
Sbjct: 61 EMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQA 120
Query: 413 --QKSD----------SGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD--- 457
QK+ + + +L K A T+++ K + K ++++V+AV ++ D
Sbjct: 121 AAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEG 180
Query: 458 LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKA 517
+ ++I I+K +G +++D+ L+ GV K A PK + KIALLN +E+K
Sbjct: 181 KVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQM---PKKVTDAKIALLNCAIEIKE 237
Query: 518 ERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM 577
+AEIR+ + + ++ E K+L + + +I ASGA V+ + I D+A Y A +
Sbjct: 238 TETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGI 297
Query: 578 FCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQI 622
A RV + D+++ KA G V+T DL+ LG + +ER+I
Sbjct: 298 VAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKI 342
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 95/165 (57%)
Query: 47 PDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL 106
P + + ++ E K+L + + +I ASGA V+ + I D+A Y A + A RV + D+
Sbjct: 249 PAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDM 308
Query: 107 KRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAE 166
++ KA G V+T DL+ LG + +ER+I + CK+ + T+++RG E
Sbjct: 309 EKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTE 368
Query: 167 QFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
+EE R++ DA+ +V TI + +V+GGG+ E+ELS LR+Y+
Sbjct: 369 HVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 413
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 239 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV 298
PK + KIALLN +E+K +AEIR+ + + ++ E K+L + + +I ASGA V
Sbjct: 218 PKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANV 277
Query: 299 VLSKLPIGDVATQYFA 314
+ + I D+A Y A
Sbjct: 278 LFCQKGIDDLAQHYLA 293
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
Length = 543
Score = 139 bits (349), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 100/351 (28%), Positives = 174/351 (49%), Gaps = 57/351 (16%)
Query: 324 RQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISND 383
+QP +L E + G+ NI A + + + VR+TLGP+GMDK++VD G ++ND
Sbjct: 3 QQPGVL--PENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTND 60
Query: 384 GATIMKLLDIVHPAAKTLVDIAKSQDAEI------------------------------- 412
G TI++ + + HPAAK L+++AK+Q+ E+
Sbjct: 61 GVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIV 120
Query: 413 --------QKSD----------SGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMS 454
QK+ + + +L K A T+++ K + K ++++V+AV +
Sbjct: 121 VKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSA 180
Query: 455 LDD---LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511
+ D + ++I I+K +G +++D+ L+ GV K A PK + KIALLN
Sbjct: 181 VVDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQM---PKKVTDAKIALLNC 237
Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQY 571
+E+K +AEIR+ + + ++ E K+L + + +I ASGA V+ + I D+A Y
Sbjct: 238 AIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHY 297
Query: 572 FADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQI 622
A + A RV + D+++ KA G V+ L+ LG + +ER+I
Sbjct: 298 LAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKI 348
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 93/165 (56%)
Query: 47 PDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL 106
P + + ++ E K+L + + +I ASGA V+ + I D+A Y A + A RV + D+
Sbjct: 255 PAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDM 314
Query: 107 KRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAE 166
++ KA G V+ L+ LG + +ER+I + CK+ + T+++RG E
Sbjct: 315 EKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTE 374
Query: 167 QFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
+EE R++ DA+ +V TI + +V+GGG+ E+ELS LR+Y+
Sbjct: 375 HVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 419
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 239 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV 298
PK + KIALLN +E+K +AEIR+ + + ++ E K+L + + +I ASGA V
Sbjct: 224 PKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANV 283
Query: 299 VLSKLPIGDVATQYFA 314
+ + I D+A Y A
Sbjct: 284 LFCQKGIDDLAQHYLA 299
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
Length = 513
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 171/345 (49%), Gaps = 55/345 (15%)
Query: 330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMK 389
+L E + G+ NI A + + + VR+TLGP+GMDK++VD G ++NDG TI++
Sbjct: 1 VLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILR 60
Query: 390 LLDIVHPAAKTLVDIAKSQDAEI------------------------------------- 412
+ + HPAAK L+++AK+Q+ E+
Sbjct: 61 EMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQA 120
Query: 413 --QKSD----------SGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD--- 457
QK+ + + +L K A T+++ K + K ++++V+AV ++ D
Sbjct: 121 AAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEG 180
Query: 458 LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKA 517
+ ++I I+K +G +++D+ L+ GV K A PK + KIALLN +E+K
Sbjct: 181 KVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQM---PKKVTDAKIALLNCAIEIKE 237
Query: 518 ERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM 577
+AEIR+ + + ++ E K+L + + +I ASGA V+ + I D+A Y A +
Sbjct: 238 TETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGI 297
Query: 578 FCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQI 622
A RV + D+++ KA G V+ L+ LG + +ER+I
Sbjct: 298 VAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKI 342
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 93/165 (56%)
Query: 47 PDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL 106
P + + ++ E K+L + + +I ASGA V+ + I D+A Y A + A RV + D+
Sbjct: 249 PAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDM 308
Query: 107 KRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAE 166
++ KA G V+ L+ LG + +ER+I + CK+ + T+++RG E
Sbjct: 309 EKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTE 368
Query: 167 QFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
+EE R++ DA+ +V TI + +V+GGG+ E+ELS LR+Y+
Sbjct: 369 HVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 413
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 239 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV 298
PK + KIALLN +E+K +AEIR+ + + ++ E K+L + + +I ASGA V
Sbjct: 218 PKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANV 277
Query: 299 VLSKLPIGDVATQYFA 314
+ + I D+A Y A
Sbjct: 278 LFCQKGIDDLAQHYLA 293
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 529
Score = 132 bits (331), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 98/328 (29%), Positives = 159/328 (48%), Gaps = 60/328 (18%)
Query: 336 ENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVH 395
+ S G+ N+ A ++ + V+++LGP G+DK++VD G TI+NDGATI+KLL++ H
Sbjct: 4 DRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 63
Query: 396 PAAKTLVDIAKSQD--------------AEIQKS-----------------------DSG 418
PAAK L ++A QD AE+ K+ ++
Sbjct: 64 PAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAV 123
Query: 419 EY-------------RGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL--DDL----- 458
Y R L A T++SSK+I FF+ +VVDAV+++ D+
Sbjct: 124 RYISENLIINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPR 183
Query: 459 LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAE 518
P+N I + K G + +S+L++G + G + PK N KIA L+ L+
Sbjct: 184 YPVNSINVLKAHGRSQMESMLINGYALN---CVVGSQGMPKRIVNAKIACLDFSLQKTKM 240
Query: 519 RDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMF 578
+ ++ + E+ ++ E I E++ KI A+GA V+L+ I D+ +YF +
Sbjct: 241 KLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAM 300
Query: 579 CAGRVPEEDLKRTMKACGGAVMTTAHDL 606
RV + DLKR KA G V++T +L
Sbjct: 301 AVRRVLKRDLKRIAKASGATVLSTLANL 328
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 6/171 (3%)
Query: 47 PDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL 106
P++ ++ E I E++ KI A+GA V+L+ I D+ +YF + RV + DL
Sbjct: 251 PEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDL 310
Query: 107 KRTMKACGGAVMTTAHDLND------SVLGTCAVFDERQIGSERFNVFSGCKNARTCTII 160
KR KA G V++T +L S+LG + +I + + K + ++I
Sbjct: 311 KRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSASVI 370
Query: 161 VRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
+RG + +E ERSLHDA+ +V+R + + +VV GGGA+E LS L +Y+
Sbjct: 371 LRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYA 421
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 234 GFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHA 293
G + PK N KIA L+ L+ + ++ + E+ ++ E I E++ KI A
Sbjct: 215 GSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILA 274
Query: 294 SGAQVVLSKLPIGDVATQYFAD 315
+GA V+L+ I D+ +YF +
Sbjct: 275 TGANVILTTGGIDDMCLKYFVE 296
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 149/309 (48%), Gaps = 59/309 (19%)
Query: 370 LIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEIQKSD------SGE---- 419
++VD G I+NDGATI+K +DI HPAAK +V+++K+QDAE+ SGE
Sbjct: 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSK 60
Query: 420 -----------------YRGLLEKC----------------------AATALSSKLIHQQ 440
YR EKC A TA++ K
Sbjct: 61 AEELIMKGVHSTIISEGYRHAAEKCREILETITIAISPDDEAALIKIAGTAITGKGAEAY 120
Query: 441 KGFFSKMVVDAVMSL----DDLLPLNM---IGIKKVAGGALEDSLLVDGVSFKKTFAYAG 493
K S + V AV S+ +D L +N+ I I+K AGG+++DS L+DG+ K ++
Sbjct: 121 KEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHPN 180
Query: 494 FEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHAS 553
P+ +N KI LL+ +E + ++EI++ S + Q +D E K++ E +K+ AS
Sbjct: 181 M---PEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIAS 237
Query: 554 GAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGT 613
GA VV + I D+A Y ++ RV + DLKR K G ++ + +GT
Sbjct: 238 GANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGT 297
Query: 614 CAVFDERQI 622
+ +E+++
Sbjct: 298 AGLVEEKEV 306
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 91/165 (55%)
Query: 47 PDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL 106
P + Q +D E K++ E +K+ ASGA VV + I D+A Y ++ RV + DL
Sbjct: 213 PGQMQLFLDQEEKMMREMAEKVIASGANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDL 272
Query: 107 KRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAE 166
KR K G ++ + +GT + +E+++ + +GC+N++ T+++ GG E
Sbjct: 273 KRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRGGKMTYVTGCQNSKAVTVLLHGGTE 332
Query: 167 QFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
++ + +L+DA+ +V I + VV GGG+ E+ELS L +Y+
Sbjct: 333 HVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVELSLRLSEYA 377
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 239 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV 298
P+ +N KI LL+ +E + ++EI++ S + Q +D E K++ E +K+ ASGA V
Sbjct: 182 PEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANV 241
Query: 299 VLSKLPIGDVATQYFADRVYTSQVFR 324
V + I D+A QY+ ++ V R
Sbjct: 242 VFCQKGIDDMA-QYYIEKAGIYAVRR 266
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/366 (26%), Positives = 174/366 (47%), Gaps = 61/366 (16%)
Query: 325 QPQILLLKEGTENSQ-GKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISND 383
+P I++ +G + Q G S+I A ++V ++T+LGPRG+DK+++ +G+ TI+ND
Sbjct: 27 RPFIIVKDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITND 86
Query: 384 GATIMKLLDIVHPAAKTLVDIAKSQDAE----------------------IQK------- 414
GATI+ +++ + AK LV ++KSQD E IQK
Sbjct: 87 GATILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKI 146
Query: 415 ------------------------SDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVD 450
S+ +R L + A T+L SK++ + F++M V+
Sbjct: 147 ANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDRFAEMAVE 206
Query: 451 AVMSLDDL----LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFE--MQPKTYKNP 504
AV+++ D + ++I ++ GG++ DS L++GV K F++ + PK +
Sbjct: 207 AVINVMDKDRKDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEGSDG 266
Query: 505 -KIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLP 563
K+A+L E + ++ + SVEEYQK+ E E +D + +GA VV+ +
Sbjct: 267 VKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWG 326
Query: 564 IGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIG 623
D A D+ V ++L+ + G ++ DL+ LGTC+ E++ G
Sbjct: 327 FDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFG 386
Query: 624 SERDTL 629
+ +D +
Sbjct: 387 TTKDRM 392
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 2/164 (1%)
Query: 48 DEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK 107
+EYQK+ E E +D + +GA VV+ + D A D+ V ++L+
Sbjct: 293 EEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQNDLPAVRWVGGQELE 352
Query: 108 RTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGS--ERFNVFSGCKNARTCTIIVRGGA 165
+ G ++ DL+ LGTC+ E++ G+ +R + K +T T VRG
Sbjct: 353 HIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQSKETKTVTCFVRGSN 412
Query: 166 EQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRD 209
+ ++E ER+LHD++ +VR +++ VV GGGA E+ +S A+ +
Sbjct: 413 KMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSE 456
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 246 KIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI 305
K+A+L E + ++ + SVEEYQK+ E E +D + +GA VV+ +
Sbjct: 268 KLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGF 327
Query: 306 GDVATQYF 313
D A
Sbjct: 328 DDEANHLL 335
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
Length = 521
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 164/351 (46%), Gaps = 79/351 (22%)
Query: 324 RQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISND 383
+QP +L E + G+ NI A + + + VR+TLGP+GMDK++VD G ++ND
Sbjct: 3 QQPGVL--PENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTND 60
Query: 384 GATIMKLLDIVHPAAKTLVDIAKSQDAEI------------------------------- 412
G TI++ + + HPAAK L+++AK+Q+ E+
Sbjct: 61 GVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIV 120
Query: 413 --------QKSD----------SGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMS 454
QK+ + + +L K A T+++ K + K ++++V+AV +
Sbjct: 121 VKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSA 180
Query: 455 LDD---LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511
+ D + ++I I+K +G +++D+ L+ GV K A PK + KIALLN
Sbjct: 181 VVDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQM---PKKVTDAKIALLNC 237
Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQY 571
+E A ++L + + +I ASGA V+ + I D+A Y
Sbjct: 238 AIEETA----------------------SEMLKDMVAEIKASGANVLFCQKGIDDLAQHY 275
Query: 572 FADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQI 622
A + A RV + D+++ KA G V+T DL+ LG + +ER+I
Sbjct: 276 LAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKI 326
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 89/153 (58%)
Query: 59 KILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVM 118
++L + + +I ASGA V+ + I D+A Y A + A RV + D+++ KA G V+
Sbjct: 245 EMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVI 304
Query: 119 TTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHD 178
T DL+ LG + +ER+I + CK+ + T+++RG E +EE R++ D
Sbjct: 305 TNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDD 364
Query: 179 AIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
A+ +V TI + +V+GGG+ E+ELS LR+Y+
Sbjct: 365 AVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 397
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 161/345 (46%), Gaps = 77/345 (22%)
Query: 330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMK 389
+L E + G+ NI A + + + VR+TLGP+GMDK++VD G ++NDG TI++
Sbjct: 1 VLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILR 60
Query: 390 LLDIVHPAAKTLVDIAKSQDAEI------------------------------------- 412
+ + HPAAK L+++AK+Q+ E+
Sbjct: 61 EMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQA 120
Query: 413 --QKSD----------SGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD--- 457
QK+ + + +L K A T+++ K + K ++++V+AV ++ D
Sbjct: 121 AAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEG 180
Query: 458 LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKA 517
+ ++I I+K +G +++D+ L+ GV K A PK + KIALLN +E A
Sbjct: 181 KVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQM---PKKVTDAKIALLNCAIEETA 237
Query: 518 ERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM 577
++L + + +I ASGA V+ + I D+A Y A +
Sbjct: 238 ----------------------SEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGI 275
Query: 578 FCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQI 622
A RV + D+++ KA G V+T DL+ LG + +ER+I
Sbjct: 276 VAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKI 320
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 88/153 (57%)
Query: 59 KILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVM 118
++L + + +I ASGA V+ + I D+A Y A + A RV + D+++ KA G V+
Sbjct: 239 EMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVI 298
Query: 119 TTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHD 178
T DL+ LG + +ER+I + CK+ + T+++RG E +EE R++
Sbjct: 299 TNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDA 358
Query: 179 AIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
A+ +V TI + +V+GGG+ E+ELS LR+Y+
Sbjct: 359 AVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 391
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
Length = 491
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 161/345 (46%), Gaps = 77/345 (22%)
Query: 330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMK 389
+L E + G+ NI A + + + VR+TLGP+GMDK++VD G ++NDG TI++
Sbjct: 1 VLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILR 60
Query: 390 LLDIVHPAAKTLVDIAKSQDAEI------------------------------------- 412
+ + HPAAK L+++AK+Q+ E+
Sbjct: 61 EMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQA 120
Query: 413 --QKSD----------SGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD--- 457
QK+ + + +L K A T+++ K + K ++++V+AV ++ D
Sbjct: 121 AAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEG 180
Query: 458 LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKA 517
+ ++I I+K +G +++D+ L+ GV K A PK + KIALLN +E A
Sbjct: 181 KVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQM---PKKVTDAKIALLNCAIEETA 237
Query: 518 ERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM 577
++L + + +I ASGA V+ + I D+A Y A +
Sbjct: 238 ----------------------SEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGI 275
Query: 578 FCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQI 622
A RV + D+++ KA G V+T DL+ LG + +ER+I
Sbjct: 276 VAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKI 320
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 89/153 (58%)
Query: 59 KILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVM 118
++L + + +I ASGA V+ + I D+A Y A + A RV + D+++ KA G V+
Sbjct: 239 EMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVI 298
Query: 119 TTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHD 178
T DL+ LG + +ER+I + CK+ + T+++RG E +EE R++ D
Sbjct: 299 TNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDD 358
Query: 179 AIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
A+ +V TI + +V+GGG+ E+ELS LR+Y+
Sbjct: 359 AVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 391
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
Length = 491
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 159/345 (46%), Gaps = 77/345 (22%)
Query: 330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMK 389
+L E + G+ NI A + + + VR+TLGP+GMDK++VD G ++NDG TI++
Sbjct: 1 VLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILR 60
Query: 390 LLDIVHPAAKTLVDIAKSQDAEI------------------------------------- 412
+ + HPAAK L+++AK+Q+ E+
Sbjct: 61 EMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQA 120
Query: 413 --QKSD----------SGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD--- 457
QK+ + + +L K A T+++ K + K ++++V+AV ++ D
Sbjct: 121 AAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEG 180
Query: 458 LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKA 517
+ ++I I+K +G +++D+ L+ GV K A PK + KIALLN +E A
Sbjct: 181 KVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQM---PKKVTDAKIALLNCAIEETA 237
Query: 518 ERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM 577
++L + + +I ASGA V+ + I D+A Y A +
Sbjct: 238 ----------------------SEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGI 275
Query: 578 FCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQI 622
A RV + D+++ KA G V+ L+ LG + +ER+I
Sbjct: 276 VAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKI 320
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 87/153 (56%)
Query: 59 KILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVM 118
++L + + +I ASGA V+ + I D+A Y A + A RV + D+++ KA G V+
Sbjct: 239 EMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVI 298
Query: 119 TTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHD 178
L+ LG + +ER+I + CK+ + T+++RG E +EE R++ D
Sbjct: 299 AAIAALSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDD 358
Query: 179 AIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
A+ +V TI + +V+GGG+ E+ELS LR+Y+
Sbjct: 359 AVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 391
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 159/345 (46%), Gaps = 58/345 (16%)
Query: 340 GKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAK 399
G L S+I A +AV + ++T+LGP G+DK++VD++G T++NDGATI+ ++D+ H AK
Sbjct: 8 GLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAK 67
Query: 400 TLVDIAKSQDAEIQKSDSG----------EYRGLLEK----------------------- 426
+V+++KSQD EI +G E LL++
Sbjct: 68 LMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLD 127
Query: 427 ------------------CAATALSSKLIHQQKGFFSKMVVDAVMSLDDL----LPLNMI 464
A T L SK+++ +++ V+AV+++ D+ + +I
Sbjct: 128 KISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELI 187
Query: 465 GIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEI 524
++ GG LED+ L+ GV K F++ PK ++ KIA+L E + ++
Sbjct: 188 KVEGKVGGRLEDTKLIKGVIVDKDFSHPQM---PKQVEDAKIAILTCPFEPPKPKTKHKL 244
Query: 525 RLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVP 584
+ SVE+++ + E + E + +I +GA + + + D A D+ V
Sbjct: 245 DVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAVRWVG 304
Query: 585 EEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTL 629
+++ A GG ++ +L LG + E G+ +D +
Sbjct: 305 GPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKDKM 349
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 2/147 (1%)
Query: 63 EKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAH 122
E + +I +GA + + + D A D+ V +++ A GG ++
Sbjct: 265 EMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFS 324
Query: 123 DLNDSVLGTCAVFDERQIGS--ERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAI 180
+L LG + E G+ ++ V CKN+R TI +RGG + +EE +RSLHDA+
Sbjct: 325 ELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDAL 384
Query: 181 MIVRRTIRNHAVVAGGGAIEMELSKAL 207
++R IR++ VV GGGA E+ + A+
Sbjct: 385 CVIRNLIRDNRVVYGGGAAEISCALAV 411
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 518
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 101/341 (29%), Positives = 155/341 (45%), Gaps = 67/341 (19%)
Query: 341 KPQLI--SNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAA 398
KP I SNI+A +AV DA+RT+LGP+GMDK+I D G TI+NDGATI+K + ++HPAA
Sbjct: 8 KPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAA 67
Query: 399 KTLVDIAKSQDAE----------------------IQKS-----DSGEYRGLLEK----- 426
+ LV+++K+QD E +QK S ++ LEK
Sbjct: 68 RMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEIL 127
Query: 427 -----------------CAATALSSKLIHQQKGFFSKMVVDAVMSLDD-----LLPLNMI 464
AAT+L+SK++ Q S M VDAVM + D + L I
Sbjct: 128 TDMSRPVELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRDI 187
Query: 465 GIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELEL-KAERDNAE 523
I K GG ++D LV+G+ + A +G K KI L+ L K + DN
Sbjct: 188 KIVKKLGGTIDDCELVEGLVLTQKVANSGITRVEKA----KIGLIQFCLSAPKTDMDNQI 243
Query: 524 IRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVATQYFADRDMF 578
+ D V + +V+ E + + +I +G V+L + I D+A + +
Sbjct: 244 VVSDYV-QMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIM 302
Query: 579 CAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDE 619
+ ED++ K G + +LG+ + +E
Sbjct: 303 VVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEE 343
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 86/170 (50%), Gaps = 7/170 (4%)
Query: 49 EYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVATQYFADRDMFCAGRVPE 103
+ +V+ E + + +I +G V+L + I D+A + + +
Sbjct: 250 QMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIER 309
Query: 104 EDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQI-GSERFNVFSGCKN-ARTCTIIV 161
ED++ K G + +LG+ + +E + GS + +GC + +T TI+V
Sbjct: 310 EDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGCASPGKTVTIVV 369
Query: 162 RGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
RG + +EE ERS+HDA+ ++R ++ A++AGGGA E+EL+ L +YS
Sbjct: 370 RGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYS 419
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/348 (23%), Positives = 159/348 (45%), Gaps = 60/348 (17%)
Query: 335 TENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIV 394
T+ G+ NINA + + D +RT LGP+ M K+++D G ++NDG I++ + +
Sbjct: 2 TKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQ 61
Query: 395 HPAAKTLVDIAKSQDAEIQKSDS------GE---------------------YRGLLEKC 427
HPAAK++++I+++QD E+ + GE YR L+
Sbjct: 62 HPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDM 121
Query: 428 AAT----------------------ALSSKLIHQQKGFFSKMVVDAVMSLD-------DL 458
+T ++++K+I + + +DAV ++ ++
Sbjct: 122 ISTLKKISIPVDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEI 181
Query: 459 LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAE 518
++K+ GG +EDS ++ GV K + + KNP+I LL+ LE K
Sbjct: 182 DIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMR---RYIKNPRIVLLDSSLEYKKG 238
Query: 519 RDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMF 578
+I + E++ +++ E + + + + I VV+++ I D+A Y ++
Sbjct: 239 ESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANIT 298
Query: 579 CAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCA-VFDERQIGSE 625
RV + D R +ACG +++ +L + +GT A + + ++IG E
Sbjct: 299 AIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDE 346
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 93/165 (56%), Gaps = 1/165 (0%)
Query: 48 DEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK 107
+++ +++ E + + + + I VV+++ I D+A Y ++ RV + D
Sbjct: 250 EDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNN 309
Query: 108 RTMKACGGAVMTTAHDLNDSVLGTCA-VFDERQIGSERFNVFSGCKNARTCTIIVRGGAE 166
R +ACG +++ +L + +GT A + + ++IG E F + CK+ + CTI++RG ++
Sbjct: 310 RIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITECKDPKACTILLRGASK 369
Query: 167 QFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
+ L E ER+L DA+ + R + + +V GGGA EM ++ AL + S
Sbjct: 370 EILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKS 414
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|L Chain L, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|DD Chain d, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|LL Chain l, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|D Chain D, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|L Chain L, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|DD Chain d, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|LL Chain l, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 528
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 145/324 (44%), Gaps = 64/324 (19%)
Query: 334 GTENSQGKPQLI--SNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLL 391
T ++ KPQ + +NI A ++V DA+RT+LGP+GMDK+I G+ ISNDG TI+K +
Sbjct: 9 ATFKNKEKPQEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQM 68
Query: 392 DIVHPAAKTLVDIAKSQDAE-----------------------------------IQKSD 416
I+HP A+ LV+++ +QD+E Q +
Sbjct: 69 AILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAA 128
Query: 417 SGEYRGLLEKC--------------AATALSSKLIHQQKGFFSKMVVDAVMSLDDL---- 458
LLE C A+T+LSSK++ Q F + + VD+V+ + D
Sbjct: 129 KRSVDILLEMCHKVSLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKISDENSKN 188
Query: 459 LPLNMIGIKKVAGGALEDSLLVDGVSFKKT-FAYAGFEMQPKTYKNPKIALLNIELELKA 517
+ LN I + K GG ++D+ ++DGV +T AG P + KI L+ ++
Sbjct: 189 VDLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKSAG---GPTRKEKAKIGLIQFQISPPK 245
Query: 518 ERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVATQYF 572
I ++ + K++ E L KI + V+L + I D+A +
Sbjct: 246 PDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFL 305
Query: 573 ADRDMFCAGRVPEEDLKRTMKACG 596
+ ++ + E+++ K G
Sbjct: 306 SKLNIMVVKDIEREEIEFLSKGLG 329
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 67/129 (51%), Gaps = 3/129 (2%)
Query: 82 IGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIG 141
+ D+A + + ++ + E+++ K G + + L + + +E
Sbjct: 297 VNDLALHFLSKLNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSADLVEEIDSD 356
Query: 142 SERFNVFSGCKN--AR-TCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGA 198
+ +G +N AR T ++++RG ++ETERSLHDA+ ++R ++ ++AGGGA
Sbjct: 357 GSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGA 416
Query: 199 IEMELSKAL 207
E+E+S+ L
Sbjct: 417 PEIEISRRL 425
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|J Chain J, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|BB Chain b, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|JJ Chain j, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|B Chain B, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|J Chain J, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|BB Chain b, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|JJ Chain j, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 527
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 140/328 (42%), Gaps = 59/328 (17%)
Query: 353 AVVDAVRTTLGPRGMDKLIVDQNGKS-TISNDGATIMKLLDIVHPAAKT----------- 400
AV D V++TLGP+GMDKL+ + + ++NDGATI+K + + +PAAK
Sbjct: 28 AVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDE 87
Query: 401 ---------------------LVDIAKSQDAEI---------------------QKSDSG 418
L+D +K I D
Sbjct: 88 VGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKT 147
Query: 419 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSL 478
+R L A T LSSK++ Q K F+++ +A++ L L I I K+ GG L DS
Sbjct: 148 MFREDLIHIAKTTLSSKILSQDKDHFAELATNAILRLKGSTNLEHIQIIKILGGKLSDSF 207
Query: 479 LVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELEL-KAERDNAEIRLDSVEEYQKVVD 537
L +G K F QPK +N KI + N L+ K + + ++DS + ++
Sbjct: 208 LDEGFILAKKFG----NNQPKRIENAKILIANTTLDTDKVKIFGTKFKVDSTAKLAQLEK 263
Query: 538 AEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGG 597
AE + + K+ KI G +++ I D Q F D + E ++R GG
Sbjct: 264 AEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGINSIEHADFEGVERLALVTGG 323
Query: 598 AVMTTAHDLNDSVLGTCAVFDERQIGSE 625
V++T + + LG C V +E +G +
Sbjct: 324 EVVSTFDEPSKCKLGECDVIEEIMLGEQ 351
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 81/152 (53%)
Query: 56 AEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGG 115
AE + + K+ KI G +++ I D Q F D + E ++R GG
Sbjct: 264 AEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGINSIEHADFEGVERLALVTGG 323
Query: 116 AVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERS 175
V++T + + LG C V +E +G + F FSGCK CTI++RG +Q L+E ERS
Sbjct: 324 EVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCKAGEACTIVLRGATDQTLDEAERS 383
Query: 176 LHDAIMIVRRTIRNHAVVAGGGAIEMELSKAL 207
LHDA+ ++ +T + V GGG EM +SKA+
Sbjct: 384 LHDALSVLSQTTKETRTVLGGGCAEMVMSKAV 415
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
pdb|3KTT|B Chain B, Atomic Model Of Bovine Tric Cct2(Beta) Subunit Derived
From A 4.0 Angstrom Cryo-Em Map
pdb|4A0O|A Chain A, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|B Chain B, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|C Chain C, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|D Chain D, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|E Chain E, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|F Chain F, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|G Chain G, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|H Chain H, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|I Chain I, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|J Chain J, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|K Chain K, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|L Chain L, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|M Chain M, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|N Chain N, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|O Chain O, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|P Chain P, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0V|A Chain A, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|B Chain B, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|C Chain C, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|D Chain D, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|E Chain E, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|F Chain F, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|G Chain G, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|H Chain H, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|I Chain I, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|J Chain J, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|K Chain K, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|L Chain L, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|M Chain M, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|N Chain N, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|O Chain O, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|P Chain P, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0W|A Chain A, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|B Chain B, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|C Chain C, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|D Chain D, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|E Chain E, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|F Chain F, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|G Chain G, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|H Chain H, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|I Chain I, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|J Chain J, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|K Chain K, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|L Chain L, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|M Chain M, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|N Chain N, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|O Chain O, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|P Chain P, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A13|A Chain A, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|B Chain B, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|C Chain C, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|D Chain D, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|E Chain E, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|F Chain F, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|G Chain G, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|H Chain H, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|I Chain I, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|J Chain J, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|K Chain K, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|L Chain L, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|M Chain M, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|N Chain N, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|O Chain O, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|P Chain P, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
Length = 513
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 153/348 (43%), Gaps = 59/348 (16%)
Query: 334 GTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVD--QNGKSTISNDGATIMKLL 391
G + + + +S+ A+ D V++TLGP+GMDK+++ ++ ++NDGATI+K +
Sbjct: 2 GADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNI 61
Query: 392 DIVHPAAKTLVDIAKSQDAEI--------------------------------------- 412
+ +PAAK LVD+++ QD E+
Sbjct: 62 GVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREAT 121
Query: 413 -------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLL 459
SD ++R L A T LSSKL+ K F+K+ V+AV+ L
Sbjct: 122 KAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSG 181
Query: 460 PLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELEL-KAE 518
L I + K GG+L DS L +G K QPK +N KI + N ++ K +
Sbjct: 182 NLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVN----QPKRIENAKILIANTGMDTDKIK 237
Query: 519 RDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMF 578
+ +R+DS + ++ AE + + EK+++I G +++ I + Q F +
Sbjct: 238 IFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVM 297
Query: 579 CAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
++R GG + +T LG+C + +E IG ++
Sbjct: 298 AIEHADFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDK 345
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 59/102 (57%)
Query: 106 LKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGA 165
++R GG + +T LG+C + +E IG ++ FSG CTI++RG
Sbjct: 307 VERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGAT 366
Query: 166 EQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKAL 207
+Q L+E ERSLHDA+ ++ +T+++ V GGG EM ++ A+
Sbjct: 367 QQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAV 408
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 93/171 (54%), Gaps = 6/171 (3%)
Query: 47 PDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL 106
P++ +++ E I+ E++ KI +GAQVVL+ I D+ + F + + R +EDL
Sbjct: 267 PEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEAKIMGVRRCKKEDL 326
Query: 107 KRTMKACGGAVMTTAHDLN------DSVLGTCAVFDERQIGSERFNVFSGCKNARTCTII 160
+R +A G ++++ +L S LG C + + + + G + +II
Sbjct: 327 RRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKGTSKHSSSSII 386
Query: 161 VRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
+RG + L+E ERSLHD++ +V+RT+ + VV GGG +E L+ L +++
Sbjct: 387 LRGANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDNFA 437
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 90/360 (25%), Positives = 153/360 (42%), Gaps = 68/360 (18%)
Query: 320 SQVFRQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLI-------- 371
SQ+F + L G E G N+ A AV + V+++LGP G+DK++
Sbjct: 2 SQLFNNSRSDTLFLGGEKISGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFT 61
Query: 372 VDQNGKSTIS-----------------------NDGATIMKLL-------------DIVH 395
V +G + +S DG T + ++ + +H
Sbjct: 62 VTNDGATILSLLDVQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIH 121
Query: 396 PAA------KTLVDIAKSQDAEIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVV 449
P L + + + + S + L A T++SSK+I FFS MVV
Sbjct: 122 PTTIITGFRVALREAIRFINEVLSTSVDTLGKETLINIAKTSMSSKIIGADSDFFSNMVV 181
Query: 450 DAVMSLDDL-------LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYK 502
DA++++ P+ + + K G + +SLLV G + T A + PK
Sbjct: 182 DALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVAS---QAMPKRIA 238
Query: 503 --NPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLS 560
N KIA L++ L+ +I +D E+ +++ E I+ E++ KI +GAQVVL+
Sbjct: 239 GGNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLT 298
Query: 561 KLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDL------NDSVLGTC 614
I D+ + F + + R +EDL+R +A G ++++ +L S LG C
Sbjct: 299 TKGIDDLCLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLC 358
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 244 NPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKL 303
N KIA L++ L+ +I +D E+ +++ E I+ E++ KI +GAQVVL+
Sbjct: 241 NVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTK 300
Query: 304 PIGDVATQYFAD 315
I D+ + F +
Sbjct: 301 GIDDLCLKEFVE 312
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
pdb|1ASX|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
Length = 159
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 71/132 (53%)
Query: 498 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV 557
P KN KIAL++ LE+K A++++ + Q ++ E + ++KI SGA V
Sbjct: 16 PDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANV 75
Query: 558 VLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVF 617
VL + I DVA Y A ++ RV + D+++ KA G ++T DL SVLG
Sbjct: 76 VLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETV 135
Query: 618 DERQIGSERDTL 629
+ER+IG +R T
Sbjct: 136 EERKIGDDRMTF 147
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 57/107 (53%)
Query: 47 PDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL 106
P + Q ++ E + ++KI SGA VVL + I DVA Y A ++ RV + D+
Sbjct: 47 PSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDM 106
Query: 107 KRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKN 153
++ KA G ++T DL SVLG +ER+IG +R GCKN
Sbjct: 107 EKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKN 153
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 239 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV 298
P KN KIAL++ LE+K A++++ + Q ++ E + ++KI SGA V
Sbjct: 16 PDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANV 75
Query: 299 VLSKLPIGDVATQYFA 314
VL + I DVA Y A
Sbjct: 76 VLCQKGIDDVAQHYLA 91
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 590
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 59/88 (67%)
Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
Q ++ + E + G+ ISNI A +AV D +RT LGP+ M K+++D G ++NDG
Sbjct: 2 QAPVVFMNASQERTTGRQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDG 61
Query: 385 ATIMKLLDIVHPAAKTLVDIAKSQDAEI 412
I++ +D+ HPAAK++++++++QD E+
Sbjct: 62 HAILREIDVAHPAAKSMLELSRTQDEEV 89
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 86/217 (39%), Gaps = 57/217 (26%)
Query: 48 DEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK 107
+++ +++ E + + ++I A +V+++ + D+A Y RV + D
Sbjct: 267 EDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLKGGCSVLRRVKKSDNN 326
Query: 108 RTMKACGGAVMTTAHDLNDSVLGT-CAVFD-----------------------------E 137
R + G ++ DL +S +GT C +F E
Sbjct: 327 RIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNCKEPGSGSGWSHPQFE 386
Query: 138 RQIGSERF----------NVFSGCKNA-----------------RTCTIIVRGGAEQFLE 170
+ G R+ N F ++ + CTI++RGG++ L
Sbjct: 387 KGSGKRRWKKNFIAVSAANRFKKISSSGALGSGHHHHHHHHGSGKACTIMLRGGSKDILN 446
Query: 171 ETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKAL 207
E +R+L DA+ + R + + ++ GGGA EM +S L
Sbjct: 447 EIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKL 483
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 87/173 (50%), Gaps = 11/173 (6%)
Query: 48 DEYQKVVDAEWKILYEKLDKI---------HASGAQVVLSKLPIGDVATQYFADRDMFCA 98
+E +K+V AE K + +++ KI + VV+++ I + A +
Sbjct: 246 EEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIIAL 305
Query: 99 GRVPEEDLKRTMKACGGAVMTTAHDLN-DSVLGTCAVFDERQIGSERFNVFSGCKNARTC 157
R +++R ACGG + + DLN D +LG V+ E +G E+F C N R+
Sbjct: 306 RRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAGVY-EYTLGEEKFTFIEKCNNPRSV 364
Query: 158 TIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDY 210
T++++G + L + + ++ D + V+ I + VV G GA+E+ +++AL Y
Sbjct: 365 TLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKY 417
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/355 (22%), Positives = 149/355 (41%), Gaps = 65/355 (18%)
Query: 336 ENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVH 395
E ++ + L NI+A + + D +RT LGP+G K++V G ++ DG ++ + I H
Sbjct: 4 EVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQH 63
Query: 396 PAAKTLVDIAKSQD--------------------AEIQKSDSGEYRGLLE---------- 425
P A + +A +QD A++ S+ R + E
Sbjct: 64 PTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKAL 123
Query: 426 ------------------KCAATALSSKLIHQQKGFFSKMVVDAVMSL---DDLLPLNMI 464
A T+L +K+ + ++ VVD+++++ D+ + L M+
Sbjct: 124 QFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQDEPIDLFMV 183
Query: 465 GIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEI 524
I ++ + D+ L+ G+ + + K ++ I N+ LE + N+
Sbjct: 184 EIMEMKHKSETDTSLIRGLVLDHGARHPDMK---KRVEDAYILTCNVSLEYEKTEVNSGF 240
Query: 525 RLDSVEEYQKVVDAEWKILYEKLDKI---------HASGAQVVLSKLPIGDVATQYFADR 575
S EE +K+V AE K + +++ KI + VV+++ I + A
Sbjct: 241 FYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKE 300
Query: 576 DMFCAGRVPEEDLKRTMKACGGAVMTTAHDLN-DSVLGTCAVFDERQIGSERDTL 629
+ R +++R ACGG + + DLN D +LG V+ E +G E+ T
Sbjct: 301 GIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAGVY-EYTLGEEKFTF 354
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 84/370 (22%), Positives = 149/370 (40%), Gaps = 64/370 (17%)
Query: 324 RQPQILLLKEGTEN-SQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISN 382
+ P L K+G + S Q+I +I A + + T++GP G +K+IV+ GK I+N
Sbjct: 7 QNPNAGLFKQGYNSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITN 66
Query: 383 DGATIMKLLDIVHPAAKTLVDIAKSQDAEIQKSD------SGEYRGLLEKCAATALSSKL 436
D AT+++ LDIVHPA K LV + Q ++ +GE + EK + LS+
Sbjct: 67 DAATMLRELDIVHPAVKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVE 126
Query: 437 IHQQKGFFSK--------MVVDAVMSLDD------------------------------- 457
I Q K MVV + +D
Sbjct: 127 IIQGYNMARKFTLKELDEMVVGEITDKNDKNELLKMIKPVISSKKYGSEDILSELVSEAV 186
Query: 458 --LLP------------LNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKN 503
+LP ++ I + K+ GG+L +S ++ G+ F + G K
Sbjct: 187 SHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNR--EPEGHVKSLSEDKK 244
Query: 504 PKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLP 563
K+A+ L++ + L + +E E K + + +I G + +++
Sbjct: 245 HKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAG 304
Query: 564 IGDVATQYFADRDMFCAGRVPEE-DLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQI 622
+G++A Y +R +VP + +L+R + CG + LG +I
Sbjct: 305 VGELALHYL-NRYGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEI 363
Query: 623 GSERDTLNRE 632
G +R T+ ++
Sbjct: 364 GGDRVTVFKQ 373
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 56 AEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEE-DLKRTMKACG 114
E K + + +I G + +++ +G++A Y +R +VP + +L+R + CG
Sbjct: 279 GEEKQIDAMMKEIADMGVECIVAGAGVGELALHYL-NRYGILVLKVPSKFELRRLCRVCG 337
Query: 115 GAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKN--ARTCTIIVRGGAEQFLEET 172
+ LG +IG +R VF + +RT TII+RG + L++
Sbjct: 338 ATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQGEISRTSTIILRGATQNNLDDI 397
Query: 173 ERSLHDAIMIVRRTIRNHA--VVAGGGAIEMELSKALRDY 210
ER++ D + V+ ++ ++ G GA E+EL + Y
Sbjct: 398 ERAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKY 437
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 512
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 139/339 (41%), Gaps = 65/339 (19%)
Query: 333 EGTENSQGKPQLI-SNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLL 391
EG ++ G + + NI AC+ + RT GP GM+K++++ K ++ND ATI++ L
Sbjct: 1 EGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILREL 60
Query: 392 DIVHPAAKTLVDIAKSQDAEI------------------------QKSDSGEYRGL---- 423
++ HPAAK +V + Q+ E+ S S G
Sbjct: 61 EVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIAC 120
Query: 424 ---------LEKCAATALS-----SKLIH-----QQKG---FFSKMVVDAVMSL---DDL 458
L C+A L S L+H +Q G F +K++ A +S+
Sbjct: 121 KKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEVFLAKLIAQACVSIFPDSGH 180
Query: 459 LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAE 518
++ I + K+ G + S ++ G+ FKK E + K+ KIA+ + +
Sbjct: 181 FNVDNIRVCKILGSGVHSSSVLHGMVFKKE-----TEGDVTSVKDAKIAVYSCPFDGMIT 235
Query: 519 RDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMF 578
+ + S EE E ++ ++ I +GA VV++ + D+A Y ++
Sbjct: 236 ETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIM 295
Query: 579 CAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVL---GTC 614
+ DL+R K G T LN VL G C
Sbjct: 296 LVRLNSKWDLRRLCKTVGA---TALPRLNPPVLEEMGHC 331
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 7/167 (4%)
Query: 48 DEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK 107
+E E ++ ++ I +GA VV++ + D+A Y ++ + DL+
Sbjct: 247 EELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLVRLNSKWDLR 306
Query: 108 RTMKACGGAVMTTAHDLNDSVL---GTCAVFDERQIGSERFNVFSGCK-NARTCTIIVRG 163
R K G T LN VL G C ++G + VF K + TI++RG
Sbjct: 307 RLCKTVGA---TALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRG 363
Query: 164 GAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDY 210
+ +++ ER++ D + + R+ +V GGGA E+EL+K + Y
Sbjct: 364 STDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSY 410
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome
Length = 159
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 79/146 (54%), Gaps = 3/146 (2%)
Query: 480 VDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAE 539
++G+ K + G P K+ KIALL+ LE+K + +R++ QK + E
Sbjct: 1 MNGIIVDKEKVHPGM---PDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQE 57
Query: 540 WKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAV 599
+L E +DKI + GA VV+++ I D+A Y + ++ RV + D+ + KA G ++
Sbjct: 58 ENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASI 117
Query: 600 MTTAHDLNDSVLGTCAVFDERQIGSE 625
++T +++ S LGT ++ ++G +
Sbjct: 118 VSTIDEISSSDLGTAERVEQVKVGED 143
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 59/107 (55%)
Query: 47 PDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL 106
P QK + E +L E +DKI + GA VV+++ I D+A Y + ++ RV + D+
Sbjct: 47 PSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDM 106
Query: 107 KRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKN 153
+ KA G ++++T +++ S LGT ++ ++G + +G KN
Sbjct: 107 DKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGSKN 153
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 239 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV 298
P K+ KIALL+ LE+K + +R++ QK + E +L E +DKI + GA V
Sbjct: 16 PDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANV 75
Query: 299 VLSKLPIGDVATQYFA 314
V+++ I D+A Y +
Sbjct: 76 VITQKGIDDMAQHYLS 91
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|N Chain N, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|FF Chain f, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|NN Chain n, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|F Chain F, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|N Chain N, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|FF Chain f, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|NN Chain n, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 546
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 86/184 (46%), Gaps = 12/184 (6%)
Query: 48 DEYQKVVDAEWKILYEKLDKI----------HASGAQVVLSKLPIGDVATQYFADRDMFC 97
D+ K+ +E K + KL KI V++++ I ++ FA ++
Sbjct: 257 DQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNILA 316
Query: 98 AGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTC 157
R +++R GG + DL+ +LG + + IG E+F + + ++C
Sbjct: 317 LRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEEKFTYVTENTDPKSC 376
Query: 158 TIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALR--DYSGLGD 215
TI+++G L +T+ ++ D + V +++ ++ G GA + LS+ LR + + LG
Sbjct: 377 TILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRYLRSANMNKLGA 436
Query: 216 KVRT 219
K +T
Sbjct: 437 KGKT 440
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/364 (20%), Positives = 139/364 (38%), Gaps = 68/364 (18%)
Query: 330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMK 389
LL E+ + L N+ + + + + T LGP+G K++VD G ++ DG ++
Sbjct: 5 LLNPKAESLRRDAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLT 64
Query: 390 LLDIVHPAAKTLVDIAKSQDA--------------------------------------- 410
+ I P A + A +QD
Sbjct: 65 EMQIQSPTAVLIARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEI 124
Query: 411 ------------EIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL 458
+I K++ R L + A ++L +K+ + +V DAV+S+ D
Sbjct: 125 ARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSVYDA 184
Query: 459 ----LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELE 514
L L+M+ I ++ + +D+ + G+ + P KN + +LN+ LE
Sbjct: 185 QADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDM---PTRVKNAYVLILNVSLE 241
Query: 515 LKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKI----------HASGAQVVLSKLPI 564
+ N+ S ++ K+ +E K + KL KI V++++ I
Sbjct: 242 YEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGI 301
Query: 565 GDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGS 624
++ FA ++ R +++R GG + DL+ +LG + + IG
Sbjct: 302 DPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGE 361
Query: 625 ERDT 628
E+ T
Sbjct: 362 EKFT 365
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GN1|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|E Chain E, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|F Chain F, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|G Chain G, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|H Chain H, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
Length = 178
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 4/153 (2%)
Query: 474 LEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQ 533
+EDS ++ GV K + + KNP+I LL+ LE K +I + E++
Sbjct: 1 MEDSCVLRGVMINKDVTHPRMR---RYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFT 57
Query: 534 KVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMK 593
+++ E + +++ + I VV+++ I D+A Y ++ RV + D R +
Sbjct: 58 RILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIAR 117
Query: 594 ACGGAVMTTAHDLNDSVLGTCA-VFDERQIGSE 625
ACG +++ +L + +GT A + + ++IG E
Sbjct: 118 ACGARIVSRPEELREDDVGTGAGLLEIKKIGDE 150
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
Query: 48 DEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK 107
+++ +++ E + +++ + I VV+++ I D+A Y ++ RV + D
Sbjct: 54 EDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNN 113
Query: 108 RTMKACGGAVMTTAHDLNDSVLGTCA-VFDERQIGSERFNVFSGCKNARTCTIIVRGGA 165
R +ACG +++ +L + +GT A + + ++IG E F + CK+ + CTI++RG +
Sbjct: 114 RIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGAS 172
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
pdb|3RTK|B Chain B, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
Length = 546
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 351 CQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHP----AAKTLVDIAK 406
A+ DAV+ TLGP+G + ++ + G TI+NDG +I K +++ P A+ + ++AK
Sbjct: 19 LNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAK 78
Query: 407 SQD 409
D
Sbjct: 79 KTD 81
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|B Chain B, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|C Chain C, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|D Chain D, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|E Chain E, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|F Chain F, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|G Chain G, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|H Chain H, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|I Chain I, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|J Chain J, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|K Chain K, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|L Chain L, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|M Chain M, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|N Chain N, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|AA Chain a, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|BB Chain b, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|CC Chain c, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|DD Chain d, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|EE Chain e, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|FF Chain f, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|GG Chain g, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|HH Chain h, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|II Chain i, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|JJ Chain j, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|KK Chain k, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|LL Chain l, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|MM Chain m, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|NN Chain n, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 543
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 351 CQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDI 393
AV +AV+ TLGPRG + ++ + G TI+ DG T+ K +++
Sbjct: 19 VNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVEL 61
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|B Chain B, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|C Chain C, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|D Chain D, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|E Chain E, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|F Chain F, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|G Chain G, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
Length = 545
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 337 NSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDI 393
NS + +++ +N + DAV+ TLGP+G + +I G I+ DG ++ K +++
Sbjct: 9 NSDARDRMLKGVNI---LADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIEL 62
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|B Chain B, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|C Chain C, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|D Chain D, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|E Chain E, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|F Chain F, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|G Chain G, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|H Chain H, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|I Chain I, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|J Chain J, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|K Chain K, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|L Chain L, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|M Chain M, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|N Chain N, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|A Chain A, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|B Chain B, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|C Chain C, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|D Chain D, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|E Chain E, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|F Chain F, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|G Chain G, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|H Chain H, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|I Chain I, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|J Chain J, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|K Chain K, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|L Chain L, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|M Chain M, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|N Chain N, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1MNF|A Chain A, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|B Chain B, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|C Chain C, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|D Chain D, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|E Chain E, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|F Chain F, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|G Chain G, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|H Chain H, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|I Chain I, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|J Chain J, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|K Chain K, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|L Chain L, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|M Chain M, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|N Chain N, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1XCK|A Chain A, Crystal Structure Of Apo Groel
pdb|1XCK|B Chain B, Crystal Structure Of Apo Groel
pdb|1XCK|C Chain C, Crystal Structure Of Apo Groel
pdb|1XCK|D Chain D, Crystal Structure Of Apo Groel
pdb|1XCK|E Chain E, Crystal Structure Of Apo Groel
pdb|1XCK|F Chain F, Crystal Structure Of Apo Groel
pdb|1XCK|G Chain G, Crystal Structure Of Apo Groel
pdb|1XCK|H Chain H, Crystal Structure Of Apo Groel
pdb|1XCK|I Chain I, Crystal Structure Of Apo Groel
pdb|1XCK|J Chain J, Crystal Structure Of Apo Groel
pdb|1XCK|K Chain K, Crystal Structure Of Apo Groel
pdb|1XCK|L Chain L, Crystal Structure Of Apo Groel
pdb|1XCK|M Chain M, Crystal Structure Of Apo Groel
pdb|1XCK|N Chain N, Crystal Structure Of Apo Groel
pdb|2C7C|A Chain A, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|B Chain B, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|C Chain C, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|D Chain D, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|E Chain E, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|F Chain F, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|G Chain G, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|H Chain H, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|I Chain I, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|J Chain J, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|K Chain K, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|L Chain L, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|M Chain M, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|N Chain N, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|A Chain A, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|B Chain B, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|C Chain C, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|D Chain D, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|E Chain E, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|F Chain F, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|G Chain G, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|H Chain H, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|I Chain I, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|J Chain J, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|K Chain K, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|L Chain L, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|M Chain M, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|N Chain N, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2CGT|A Chain A, Groel-Adp-Gp31 Complex
pdb|2CGT|B Chain B, Groel-Adp-Gp31 Complex
pdb|2CGT|C Chain C, Groel-Adp-Gp31 Complex
pdb|2CGT|D Chain D, Groel-Adp-Gp31 Complex
pdb|2CGT|E Chain E, Groel-Adp-Gp31 Complex
pdb|2CGT|F Chain F, Groel-Adp-Gp31 Complex
pdb|2CGT|G Chain G, Groel-Adp-Gp31 Complex
pdb|2CGT|H Chain H, Groel-Adp-Gp31 Complex
pdb|2CGT|I Chain I, Groel-Adp-Gp31 Complex
pdb|2CGT|J Chain J, Groel-Adp-Gp31 Complex
pdb|2CGT|K Chain K, Groel-Adp-Gp31 Complex
pdb|2CGT|L Chain L, Groel-Adp-Gp31 Complex
pdb|2CGT|M Chain M, Groel-Adp-Gp31 Complex
pdb|2CGT|N Chain N, Groel-Adp-Gp31 Complex
pdb|2NWC|A Chain A, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|B Chain B, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|C Chain C, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|D Chain D, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|E Chain E, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|F Chain F, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|G Chain G, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|H Chain H, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|I Chain I, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|J Chain J, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|K Chain K, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|L Chain L, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|M Chain M, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|N Chain N, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|3E76|A Chain A, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|B Chain B, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|C Chain C, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|D Chain D, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|E Chain E, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|F Chain F, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|G Chain G, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|H Chain H, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|I Chain I, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|J Chain J, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|K Chain K, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|L Chain L, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|M Chain M, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|N Chain N, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
Length = 547
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 340 GKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDI 393
G + + + DAV+ TLGP+G + ++ G TI+ DG ++ + +++
Sbjct: 8 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes
pdb|1PCQ|B Chain B, Crystal Structure Of Groel-Groes
pdb|1PCQ|C Chain C, Crystal Structure Of Groel-Groes
pdb|1PCQ|D Chain D, Crystal Structure Of Groel-Groes
pdb|1PCQ|E Chain E, Crystal Structure Of Groel-Groes
pdb|1PCQ|F Chain F, Crystal Structure Of Groel-Groes
pdb|1PCQ|G Chain G, Crystal Structure Of Groel-Groes
pdb|1PCQ|H Chain H, Crystal Structure Of Groel-Groes
pdb|1PCQ|I Chain I, Crystal Structure Of Groel-Groes
pdb|1PCQ|J Chain J, Crystal Structure Of Groel-Groes
pdb|1PCQ|K Chain K, Crystal Structure Of Groel-Groes
pdb|1PCQ|L Chain L, Crystal Structure Of Groel-Groes
pdb|1PCQ|M Chain M, Crystal Structure Of Groel-Groes
pdb|1PCQ|N Chain N, Crystal Structure Of Groel-Groes
pdb|1PF9|A Chain A, Groel-Groes-Adp
pdb|1PF9|B Chain B, Groel-Groes-Adp
pdb|1PF9|C Chain C, Groel-Groes-Adp
pdb|1PF9|D Chain D, Groel-Groes-Adp
pdb|1PF9|E Chain E, Groel-Groes-Adp
pdb|1PF9|F Chain F, Groel-Groes-Adp
pdb|1PF9|G Chain G, Groel-Groes-Adp
pdb|1PF9|H Chain H, Groel-Groes-Adp
pdb|1PF9|I Chain I, Groel-Groes-Adp
pdb|1PF9|J Chain J, Groel-Groes-Adp
pdb|1PF9|K Chain K, Groel-Groes-Adp
pdb|1PF9|L Chain L, Groel-Groes-Adp
pdb|1PF9|M Chain M, Groel-Groes-Adp
pdb|1PF9|N Chain N, Groel-Groes-Adp
pdb|1SVT|A Chain A, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|B Chain B, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|C Chain C, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|D Chain D, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|E Chain E, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|F Chain F, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|G Chain G, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|H Chain H, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|I Chain I, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|J Chain J, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|K Chain K, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|L Chain L, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|M Chain M, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|N Chain N, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|A Chain A, Groel-Groes-Adp7
pdb|1SX4|B Chain B, Groel-Groes-Adp7
pdb|1SX4|C Chain C, Groel-Groes-Adp7
pdb|1SX4|D Chain D, Groel-Groes-Adp7
pdb|1SX4|E Chain E, Groel-Groes-Adp7
pdb|1SX4|F Chain F, Groel-Groes-Adp7
pdb|1SX4|G Chain G, Groel-Groes-Adp7
pdb|1SX4|H Chain H, Groel-Groes-Adp7
pdb|1SX4|I Chain I, Groel-Groes-Adp7
pdb|1SX4|J Chain J, Groel-Groes-Adp7
pdb|1SX4|K Chain K, Groel-Groes-Adp7
pdb|1SX4|L Chain L, Groel-Groes-Adp7
pdb|1SX4|M Chain M, Groel-Groes-Adp7
pdb|1SX4|N Chain N, Groel-Groes-Adp7
pdb|2YNJ|A Chain A, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|B Chain B, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|C Chain C, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|D Chain D, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|E Chain E, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|F Chain F, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|G Chain G, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|H Chain H, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|I Chain I, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|J Chain J, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|K Chain K, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|L Chain L, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|M Chain M, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|N Chain N, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
Length = 524
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 340 GKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDI 393
G + + + DAV+ TLGP+G + ++ G TI+ DG ++ + +++
Sbjct: 8 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|B Chain B, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|C Chain C, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|D Chain D, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|E Chain E, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|F Chain F, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|G Chain G, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|H Chain H, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|I Chain I, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|J Chain J, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|K Chain K, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|L Chain L, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|M Chain M, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|N Chain N, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
Length = 524
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 340 GKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDI 393
G + + + DAV+ TLGP+G + ++ G TI+ DG ++ + +++
Sbjct: 8 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|B Chain B, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|C Chain C, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|D Chain D, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|E Chain E, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|F Chain F, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|G Chain G, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|H Chain H, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|I Chain I, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|J Chain J, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|K Chain K, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|L Chain L, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|M Chain M, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|N Chain N, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
Length = 526
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 340 GKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDI 393
G + + + DAV+ TLGP+G + ++ G TI+ DG ++ + +++
Sbjct: 8 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|B Chain B, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|C Chain C, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|D Chain D, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|E Chain E, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|F Chain F, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|G Chain G, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|H Chain H, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|I Chain I, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|J Chain J, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|K Chain K, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|L Chain L, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|M Chain M, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|N Chain N, Crystal Structure Of The Chaperonin Groel-E461k
Length = 548
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 340 GKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDI 393
G + + + DAV+ TLGP+G + ++ G TI+ DG ++ + +++
Sbjct: 9 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 62
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
Length = 548
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 340 GKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDI 393
G + + + DAV+ TLGP+G + ++ G TI+ DG ++ + +++
Sbjct: 9 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 62
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|B Chain B, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|C Chain C, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|D Chain D, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|E Chain E, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|F Chain F, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|G Chain G, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|H Chain H, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|I Chain I, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|J Chain J, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|K Chain K, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|L Chain L, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|M Chain M, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|N Chain N, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|O Chain O, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|P Chain P, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Q Chain Q, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|R Chain R, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|S Chain S, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|T Chain T, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|U Chain U, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|V Chain V, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|W Chain W, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|X Chain X, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Y Chain Y, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Z Chain Z, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|1 Chain 1, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|2 Chain 2, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
Length = 547
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 340 GKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDI 393
G + + + DAV+ TLGP+G + ++ G TI+ DG ++ + +++
Sbjct: 8 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|B Chain B, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|C Chain C, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|D Chain D, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|E Chain E, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|F Chain F, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|G Chain G, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|H Chain H, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|I Chain I, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|J Chain J, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|K Chain K, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|L Chain L, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|M Chain M, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|N Chain N, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|2C7E|A Chain A, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|B Chain B, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|C Chain C, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|D Chain D, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|E Chain E, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|F Chain F, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|G Chain G, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|H Chain H, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|I Chain I, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|J Chain J, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|K Chain K, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|L Chain L, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|M Chain M, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|N Chain N, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
Length = 547
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 348 INACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDI 393
+ + DAV+ TLGP+G + ++ G TI+ DG ++ + +++
Sbjct: 16 LRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14
pdb|1SX3|B Chain B, Groel14-(Atpgammas)14
pdb|1SX3|C Chain C, Groel14-(Atpgammas)14
pdb|1SX3|D Chain D, Groel14-(Atpgammas)14
pdb|1SX3|E Chain E, Groel14-(Atpgammas)14
pdb|1SX3|F Chain F, Groel14-(Atpgammas)14
pdb|1SX3|G Chain G, Groel14-(Atpgammas)14
pdb|1SX3|H Chain H, Groel14-(Atpgammas)14
pdb|1SX3|I Chain I, Groel14-(Atpgammas)14
pdb|1SX3|J Chain J, Groel14-(Atpgammas)14
pdb|1SX3|K Chain K, Groel14-(Atpgammas)14
pdb|1SX3|L Chain L, Groel14-(Atpgammas)14
pdb|1SX3|M Chain M, Groel14-(Atpgammas)14
pdb|1SX3|N Chain N, Groel14-(Atpgammas)14
Length = 525
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 345 ISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDI 393
+ + + DAV+ TLGP+G + ++ G TI+ DG ++ + +++
Sbjct: 13 VKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|B Chain B, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|C Chain C, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|D Chain D, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|E Chain E, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|F Chain F, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|G Chain G, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
Length = 547
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 348 INACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDI 393
+ + DAV+ TLGP+G + ++ G TI+ DG ++ + +++
Sbjct: 16 LRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
>pdb|1SS8|A Chain A, Groel
pdb|1SS8|B Chain B, Groel
pdb|1SS8|C Chain C, Groel
pdb|1SS8|D Chain D, Groel
pdb|1SS8|E Chain E, Groel
pdb|1SS8|F Chain F, Groel
pdb|1SS8|G Chain G, Groel
Length = 524
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 348 INACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDI 393
+ + DAV+ TLGP+G + ++ G TI+ DG ++ + +++
Sbjct: 16 LRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|B Chain B, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|C Chain C, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|D Chain D, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|E Chain E, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|F Chain F, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|G Chain G, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|H Chain H, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|I Chain I, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|J Chain J, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|K Chain K, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|L Chain L, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|M Chain M, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|N Chain N, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
Length = 526
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 348 INACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDI 393
+ + DAV+ TLGP+G + ++ G TI+ DG ++ + +++
Sbjct: 16 LRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|B Chain B, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|C Chain C, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|D Chain D, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|E Chain E, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|F Chain F, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|G Chain G, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|H Chain H, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|I Chain I, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|J Chain J, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|K Chain K, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|L Chain L, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|M Chain M, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|N Chain N, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
Length = 547
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 348 INACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDI 393
+ + DAV+ TLGP+G + ++ G TI+ DG ++ + +++
Sbjct: 16 LRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|B Chain B, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|C Chain C, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|D Chain D, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|E Chain E, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|F Chain F, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|G Chain G, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
Length = 548
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 348 INACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDI 393
+ + DAV+ TLGP+G + ++ G TI+ DG ++ + +++
Sbjct: 17 LRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 62
>pdb|1TZL|A Chain A, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|B Chain B, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|C Chain C, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|D Chain D, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|E Chain E, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|F Chain F, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|G Chain G, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|H Chain H, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp
Length = 622
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 53/148 (35%), Gaps = 21/148 (14%)
Query: 57 EWKILYEKLDKIHASGA----QVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKA 112
EW LY K + +G + + L + +A +Y RD ++P +R+
Sbjct: 193 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLAEEYKGQRDF---QQIPLAATRRSPTF 249
Query: 113 CGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEET 172
+ T DL + ERFN+F A C +VR +E
Sbjct: 250 VEWSSANTVFDLQNR--------PNTDAPEERFNLFP----AVACERVVRNALNSEIESL 297
Query: 173 ERSLHDAIMIVRRTIRNHAVVAGGGAIE 200
+HD I R I+ V GA+
Sbjct: 298 H--IHDLISGDRFEIKADVYVLTAGAVH 323
>pdb|3J2I|B Chain B, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 245
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 142 SERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVA 194
S VFS N T ++ GG+E F E L DAI IV TI ++
Sbjct: 10 SNEIGVFSKLTN--TYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60
>pdb|2F6C|A Chain A, Reaction Geometry And Thermostability Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp.,
Thermostability Mutant E542k
Length = 595
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 53/148 (35%), Gaps = 21/148 (14%)
Query: 57 EWKILYEKLDKIHASGA----QVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKA 112
EW LY K + +G + + L + +A +Y RD ++P +R+
Sbjct: 166 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLAEEYKGQRDF---QQIPLAATRRSPTF 222
Query: 113 CGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEET 172
+ T DL + ERFN+F A C +VR +E
Sbjct: 223 VEWSSANTVFDLQNR--------PNTDAPEERFNLFP----AVACERVVRNALNSEIESL 270
Query: 173 ERSLHDAIMIVRRTIRNHAVVAGGGAIE 200
+HD I R I+ V GA+
Sbjct: 271 H--IHDLISGDRFEIKADVYVLTAGAVH 296
>pdb|2F5V|A Chain A, Reaction Geometry And Thermostability Mutant Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp
Length = 595
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 53/148 (35%), Gaps = 21/148 (14%)
Query: 57 EWKILYEKLDKIHASGA----QVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKA 112
EW LY K + +G + + L + +A +Y RD ++P +R+
Sbjct: 166 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLAEEYKGQRDF---QQIPLAATRRSPTF 222
Query: 113 CGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEET 172
+ T DL + ERFN+F A C +VR +E
Sbjct: 223 VEWSSANTVFDLQNR--------PNTDAPEERFNLFP----AVACERVVRNALNSEIESL 270
Query: 173 ERSLHDAIMIVRRTIRNHAVVAGGGAIE 200
+HD I R I+ V GA+
Sbjct: 271 H--IHDLISGDRFEIKADVYVLTAGAVH 296
>pdb|1G62|A Chain A, Crystal Structure Of S.Cerevisiae Eif6
pdb|2X7N|B Chain B, Mechanism Of Eif6s Anti-Association Activity
Length = 224
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 142 SERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVA 194
S VFS N T ++ GG+E F E L DAI IV TI ++
Sbjct: 10 SNEIGVFSKLTN--TYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60
>pdb|1FPO|A Chain A, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|B Chain B, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|C Chain C, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
Length = 171
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 221 HPSDNSFHAISPDGFEMQPKTYKNPKIALLNIELELKAERDNA-----EIRLDS-VEEYQ 274
HP + + +S GF++ + + A L +LEL+ E D E RL+S ++ +
Sbjct: 63 HPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVK 122
Query: 275 KVVDAEWKILYEKLDKIHASGAQVVLSKLPIGD 307
K+ D +++ E+LD A KL D
Sbjct: 123 KMFDTRHQLMVEQLDNETWDAAADTCRKLRFLD 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,265,739
Number of Sequences: 62578
Number of extensions: 693656
Number of successful extensions: 2016
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1782
Number of HSP's gapped (non-prelim): 234
length of query: 632
length of database: 14,973,337
effective HSP length: 105
effective length of query: 527
effective length of database: 8,402,647
effective search space: 4428194969
effective search space used: 4428194969
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)