Query psy17074
Match_columns 632
No_of_seqs 395 out of 3410
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 21:13:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17074.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17074hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02339 thermosome_arch ther 100.0 4E-55 8.6E-60 489.7 31.1 299 330-632 4-360 (519)
2 cd03340 TCP1_eta TCP-1 (CTT or 100.0 1.6E-54 3.5E-59 485.1 32.3 303 330-632 4-359 (522)
3 cd03343 cpn60 cpn60 chaperonin 100.0 2.8E-54 6.1E-59 483.3 30.7 299 330-632 3-357 (517)
4 TIGR02347 chap_CCT_zeta T-comp 100.0 1.5E-53 3.2E-58 476.0 32.5 300 330-632 4-366 (531)
5 TIGR02343 chap_CCT_epsi T-comp 100.0 1.1E-53 2.3E-58 478.1 30.9 303 327-632 10-371 (532)
6 KOG0361|consensus 100.0 2.2E-54 4.8E-59 434.6 19.8 309 324-632 2-363 (543)
7 cd03339 TCP1_epsilon TCP-1 (CT 100.0 3.1E-53 6.6E-58 474.9 30.8 301 329-632 8-367 (526)
8 cd03336 TCP1_beta TCP-1 (CTT o 100.0 6.8E-53 1.5E-57 470.8 33.3 298 331-632 2-354 (517)
9 PTZ00212 T-complex protein 1 s 100.0 5.2E-53 1.1E-57 473.1 32.4 304 325-632 5-366 (533)
10 TIGR02344 chap_CCT_gamma T-com 100.0 3.1E-53 6.8E-58 475.1 29.9 299 330-632 4-361 (525)
11 TIGR02345 chap_CCT_eta T-compl 100.0 7.2E-53 1.6E-57 471.2 30.8 303 329-632 5-360 (522)
12 cd03335 TCP1_alpha TCP-1 (CTT 100.0 2.5E-52 5.3E-57 467.7 30.9 294 336-632 2-358 (527)
13 cd03338 TCP1_delta TCP-1 (CTT 100.0 7.2E-52 1.6E-56 463.4 30.8 294 336-632 2-355 (515)
14 TIGR02342 chap_CCT_delta T-com 100.0 1.1E-51 2.3E-56 461.2 31.2 292 338-632 5-356 (517)
15 TIGR02340 chap_CCT_alpha T-com 100.0 2.4E-51 5.2E-56 460.3 32.1 295 335-632 5-362 (536)
16 TIGR02341 chap_CCT_beta T-comp 100.0 4E-51 8.7E-56 456.1 32.4 299 330-632 2-355 (519)
17 TIGR02346 chap_CCT_theta T-com 100.0 7E-51 1.5E-55 455.3 31.5 298 329-632 4-357 (531)
18 KOG0358|consensus 100.0 1.2E-51 2.6E-56 414.3 17.0 292 337-632 21-373 (534)
19 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 8.9E-50 1.9E-54 442.1 27.6 268 333-632 3-323 (484)
20 cd03343 cpn60 cpn60 chaperonin 100.0 5.3E-50 1.2E-54 448.7 21.4 269 33-310 240-515 (517)
21 TIGR02339 thermosome_arch ther 100.0 8.2E-50 1.8E-54 446.9 20.8 269 33-310 243-518 (519)
22 cd03339 TCP1_epsilon TCP-1 (CT 100.0 1.3E-49 2.7E-54 445.7 21.8 265 37-310 252-526 (526)
23 TIGR02344 chap_CCT_gamma T-com 100.0 1.4E-49 3E-54 445.6 20.2 269 34-311 244-521 (525)
24 cd03335 TCP1_alpha TCP-1 (CTT 100.0 2.5E-49 5.5E-54 443.4 21.6 268 34-310 236-524 (527)
25 TIGR02347 chap_CCT_zeta T-comp 100.0 2.3E-49 5.1E-54 442.2 20.7 270 33-311 239-525 (531)
26 PTZ00212 T-complex protein 1 s 100.0 4.6E-49 9.9E-54 441.2 21.0 265 39-312 255-526 (533)
27 TIGR02343 chap_CCT_epsi T-comp 100.0 4.4E-49 9.6E-54 440.9 20.8 265 37-310 256-530 (532)
28 KOG0362|consensus 100.0 3.3E-48 7.1E-53 402.5 25.6 299 327-631 10-359 (537)
29 cd03336 TCP1_beta TCP-1 (CTT o 100.0 6.3E-49 1.4E-53 439.0 21.5 264 39-311 243-513 (517)
30 KOG0363|consensus 100.0 6.9E-49 1.5E-53 392.7 16.7 303 326-632 2-359 (527)
31 cd03338 TCP1_delta TCP-1 (CTT 100.0 1.7E-48 3.7E-53 436.1 21.9 265 37-310 237-514 (515)
32 TIGR02342 chap_CCT_delta T-com 100.0 1.9E-48 4.2E-53 435.0 22.0 266 36-310 237-515 (517)
33 cd03340 TCP1_eta TCP-1 (CTT or 100.0 1.9E-48 4.2E-53 436.1 21.6 269 34-311 243-519 (522)
34 TIGR02341 chap_CCT_beta T-comp 100.0 7.6E-48 1.7E-52 429.7 21.5 264 39-311 244-514 (519)
35 TIGR02340 chap_CCT_alpha T-com 100.0 1.1E-47 2.3E-52 430.9 21.6 269 34-311 240-529 (536)
36 TIGR02346 chap_CCT_theta T-com 100.0 9.6E-48 2.1E-52 430.1 21.1 269 35-312 242-520 (531)
37 COG0459 GroL Chaperonin GroEL 100.0 4.4E-47 9.6E-52 418.5 25.5 295 334-632 3-352 (524)
38 cd03337 TCP1_gamma TCP-1 (CTT 100.0 4.9E-47 1.1E-51 420.1 24.5 258 330-632 4-320 (480)
39 TIGR02345 chap_CCT_eta T-compl 100.0 2.5E-47 5.4E-52 426.6 21.3 268 35-311 245-519 (522)
40 KOG0360|consensus 100.0 4.7E-47 1E-51 391.3 20.4 295 334-632 11-369 (545)
41 cd03341 TCP1_theta TCP-1 (CTT 100.0 3.6E-45 7.8E-50 404.4 26.0 250 339-632 5-309 (472)
42 cd00309 chaperonin_type_I_II c 100.0 9.8E-45 2.1E-49 401.5 26.6 251 337-632 3-306 (464)
43 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 2.3E-45 4.9E-50 406.9 17.0 229 74-311 247-482 (484)
44 KOG0364|consensus 100.0 1.1E-45 2.4E-50 377.7 12.5 304 325-632 2-361 (527)
45 KOG0361|consensus 100.0 1.6E-45 3.5E-50 370.8 12.6 268 36-312 249-523 (543)
46 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 6.2E-44 1.4E-48 397.9 26.4 274 354-631 1-322 (485)
47 COG0459 GroL Chaperonin GroEL 100.0 4.4E-45 9.4E-50 402.7 16.6 274 33-315 230-517 (524)
48 KOG0358|consensus 100.0 1.4E-44 2.9E-49 363.5 15.2 270 33-310 250-532 (534)
49 cd03341 TCP1_theta TCP-1 (CTT 100.0 1.8E-44 3.9E-49 398.8 16.0 230 72-310 231-470 (472)
50 KOG0364|consensus 100.0 1.7E-44 3.7E-49 369.0 12.5 275 32-314 242-523 (527)
51 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 1E-43 2.2E-48 396.2 13.7 265 38-311 211-483 (485)
52 PRK00013 groEL chaperonin GroE 100.0 1.3E-41 2.8E-46 379.8 28.6 259 337-632 5-334 (542)
53 cd03337 TCP1_gamma TCP-1 (CTT 100.0 3E-43 6.6E-48 389.8 15.3 227 75-310 244-479 (480)
54 PRK12849 groEL chaperonin GroE 100.0 2.4E-41 5.3E-46 377.6 27.9 258 337-632 5-334 (542)
55 PRK12851 groEL chaperonin GroE 100.0 7.8E-43 1.7E-47 389.9 14.8 240 59-313 231-525 (541)
56 cd03344 GroEL GroEL_like type 100.0 5.1E-41 1.1E-45 374.0 28.3 257 338-632 4-332 (520)
57 PTZ00114 Heat shock protein 60 100.0 3.8E-41 8.3E-46 377.7 27.2 258 336-631 16-346 (555)
58 PRK12850 groEL chaperonin GroE 100.0 2.4E-42 5.1E-47 386.2 16.8 239 59-312 231-524 (544)
59 TIGR02348 GroEL chaperonin Gro 100.0 6.5E-41 1.4E-45 373.8 27.9 258 337-632 4-333 (524)
60 PRK12852 groEL chaperonin GroE 100.0 2.5E-42 5.4E-47 386.9 16.0 240 59-312 231-525 (545)
61 PRK12849 groEL chaperonin GroE 100.0 3.1E-42 6.7E-47 384.7 15.9 238 60-312 231-523 (542)
62 PRK00013 groEL chaperonin GroE 100.0 3E-42 6.5E-47 384.8 14.9 238 61-312 232-524 (542)
63 cd03344 GroEL GroEL_like type 100.0 7.4E-42 1.6E-46 380.7 16.3 236 61-311 230-520 (520)
64 PRK12851 groEL chaperonin GroE 100.0 1.9E-40 4.2E-45 370.6 27.6 259 337-632 6-335 (541)
65 KOG0357|consensus 100.0 4.2E-42 9.1E-47 341.6 12.5 243 61-311 144-395 (400)
66 cd00309 chaperonin_type_I_II c 100.0 5.7E-42 1.2E-46 379.4 14.5 227 75-310 231-464 (464)
67 PRK14104 chaperonin GroEL; Pro 100.0 8E-42 1.7E-46 381.7 15.3 254 39-312 217-525 (546)
68 PRK12850 groEL chaperonin GroE 100.0 4E-40 8.7E-45 368.3 28.2 259 337-632 6-335 (544)
69 KOG0363|consensus 100.0 3.2E-41 6.9E-46 337.7 17.2 265 39-312 248-519 (527)
70 PLN03167 Chaperonin-60 beta su 100.0 1E-40 2.3E-45 374.9 23.6 254 336-624 58-389 (600)
71 KOG0359|consensus 100.0 2.1E-42 4.6E-47 353.2 8.3 296 334-632 9-357 (520)
72 PRK12852 groEL chaperonin GroE 100.0 4.6E-40 9.9E-45 368.6 27.0 258 337-632 6-335 (545)
73 PTZ00114 Heat shock protein 60 100.0 1.5E-41 3.3E-46 381.0 15.0 239 60-312 243-540 (555)
74 TIGR02348 GroEL chaperonin Gro 100.0 2.8E-41 6.1E-46 376.7 15.0 237 60-311 230-521 (524)
75 CHL00093 groEL chaperonin GroE 100.0 1.3E-39 2.7E-44 363.9 25.6 259 337-631 5-334 (529)
76 KOG0362|consensus 100.0 3.7E-40 8E-45 342.6 19.7 275 35-317 245-526 (537)
77 PRK14104 chaperonin GroEL; Pro 100.0 2.8E-39 6.2E-44 361.2 27.0 258 337-632 6-335 (546)
78 CHL00093 groEL chaperonin GroE 100.0 2.4E-40 5.1E-45 369.7 12.9 239 59-312 231-525 (529)
79 PLN03167 Chaperonin-60 beta su 100.0 2.8E-40 6E-45 371.4 11.8 244 60-313 286-582 (600)
80 KOG0360|consensus 100.0 2.6E-40 5.6E-45 341.4 7.3 267 36-312 249-536 (545)
81 KOG0359|consensus 100.0 1.9E-39 4.2E-44 331.6 12.4 271 32-311 235-514 (520)
82 cd03334 Fab1_TCP TCP-1 like do 100.0 2E-31 4.3E-36 272.3 20.8 185 438-632 17-214 (261)
83 KOG0356|consensus 100.0 9.8E-33 2.1E-37 291.7 10.9 242 58-316 243-541 (550)
84 cd03333 chaperonin_like chaper 100.0 4.4E-28 9.5E-33 240.6 18.0 166 422-632 2-170 (209)
85 cd03334 Fab1_TCP TCP-1 like do 99.9 1.1E-26 2.4E-31 237.4 18.7 149 45-193 103-257 (261)
86 KOG0356|consensus 99.9 5.2E-27 1.1E-31 248.4 15.4 252 335-621 17-341 (550)
87 KOG0357|consensus 99.9 2.1E-23 4.6E-28 208.4 10.5 221 325-631 9-234 (400)
88 cd03333 chaperonin_like chaper 99.8 2.4E-20 5.3E-25 185.1 15.2 115 75-189 95-209 (209)
89 KOG0230|consensus 99.7 2.4E-16 5.1E-21 183.0 11.7 185 438-632 331-527 (1598)
90 KOG0230|consensus 99.5 4.9E-14 1.1E-18 164.1 9.5 153 47-199 419-576 (1598)
91 cd00851 MTH1175 This uncharact 59.4 23 0.00051 30.1 5.6 43 546-590 55-97 (103)
92 PRK13600 putative ribosomal pr 58.7 35 0.00075 28.7 6.2 50 544-593 19-72 (84)
93 PF02579 Nitro_FeMo-Co: Dinitr 56.9 31 0.00066 28.8 5.9 42 547-590 46-87 (94)
94 cd00851 MTH1175 This uncharact 56.1 31 0.00067 29.4 5.8 44 64-109 55-98 (103)
95 COG1433 Uncharacterized conser 55.2 45 0.00098 30.1 6.7 52 63-115 56-107 (121)
96 PF02579 Nitro_FeMo-Co: Dinitr 54.9 41 0.00089 28.0 6.3 44 64-109 45-88 (94)
97 COG1433 Uncharacterized conser 54.0 47 0.001 30.0 6.6 51 546-597 57-107 (121)
98 PRK13600 putative ribosomal pr 49.3 65 0.0014 27.1 6.3 50 61-110 18-71 (84)
99 cd00562 NifX_NifB This CD repr 49.2 44 0.00095 28.3 5.7 42 547-589 54-95 (102)
100 cd00562 NifX_NifB This CD repr 48.1 50 0.0011 27.9 5.8 43 64-107 53-95 (102)
101 PRK07283 hypothetical protein; 45.6 70 0.0015 27.6 6.3 49 64-115 26-78 (98)
102 PRK07283 hypothetical protein; 44.2 73 0.0016 27.4 6.2 49 546-597 26-78 (98)
103 cd01143 YvrC Periplasmic bindi 44.0 60 0.0013 30.9 6.4 53 63-115 51-110 (195)
104 PRK13602 putative ribosomal pr 41.0 97 0.0021 25.8 6.2 51 63-116 18-72 (82)
105 PRK06683 hypothetical protein; 40.0 1E+02 0.0022 25.7 6.1 51 64-117 19-73 (82)
106 PRK09534 btuF corrinoid ABC tr 39.3 68 0.0015 34.5 6.4 53 64-116 111-170 (359)
107 TIGR03659 IsdE heme ABC transp 39.0 67 0.0015 33.1 6.2 54 63-116 82-141 (289)
108 PRK04175 rpl7ae 50S ribosomal 38.4 99 0.0021 27.9 6.3 48 65-115 39-91 (122)
109 PRK06683 hypothetical protein; 38.0 1.1E+02 0.0023 25.6 6.0 51 546-599 19-73 (82)
110 cd03465 URO-D_like The URO-D _ 37.7 2.9E+02 0.0062 28.9 10.9 124 43-178 152-296 (330)
111 cd01144 BtuF Cobalamin binding 37.5 84 0.0018 31.2 6.5 54 63-116 48-108 (245)
112 PF01248 Ribosomal_L7Ae: Ribos 37.1 71 0.0015 27.0 5.0 51 545-598 22-77 (95)
113 PRK13602 putative ribosomal pr 36.7 1.2E+02 0.0025 25.3 6.1 50 546-598 19-72 (82)
114 PRK04175 rpl7ae 50S ribosomal 36.6 1E+02 0.0022 27.7 6.1 50 546-598 38-92 (122)
115 PRK07714 hypothetical protein; 36.3 1.3E+02 0.0028 26.0 6.5 50 64-116 26-79 (100)
116 PRK13601 putative L7Ae-like ri 35.0 1.3E+02 0.0029 25.0 6.1 51 63-116 15-69 (82)
117 PF10669 Phage_Gp23: Protein g 35.0 73 0.0016 27.2 4.4 49 10-64 46-94 (121)
118 PRK07714 hypothetical protein; 34.7 1.3E+02 0.0029 25.9 6.4 50 546-598 26-79 (100)
119 cd01143 YvrC Periplasmic bindi 34.3 1E+02 0.0022 29.2 6.3 52 547-598 53-111 (195)
120 TIGR03677 rpl7ae 50S ribosomal 34.2 1.2E+02 0.0027 27.0 6.2 48 65-115 35-87 (117)
121 TIGR03677 rpl7ae 50S ribosomal 33.7 1.2E+02 0.0026 27.1 6.0 49 546-597 34-87 (117)
122 cd04743 NPD_PKS 2-Nitropropane 33.6 1.3E+02 0.0029 31.8 7.3 56 62-118 72-127 (320)
123 TIGR00129 fdhD_narQ formate de 33.5 68 0.0015 32.5 5.0 43 545-587 183-225 (237)
124 PF01248 Ribosomal_L7Ae: Ribos 33.3 88 0.0019 26.4 5.0 52 62-116 21-77 (95)
125 PTZ00106 60S ribosomal protein 33.0 1.3E+02 0.0028 26.6 6.0 49 64-115 33-86 (108)
126 TIGR03659 IsdE heme ABC transp 32.9 91 0.002 32.2 6.0 52 547-598 84-141 (289)
127 TIGR03151 enACPred_II putative 32.6 1.6E+02 0.0034 31.0 7.7 57 62-118 77-133 (307)
128 KOG2422|consensus 32.1 13 0.00028 41.8 -0.5 20 393-412 481-500 (665)
129 PF01497 Peripla_BP_2: Peripla 31.6 1.4E+02 0.0031 29.2 7.0 51 65-115 53-111 (238)
130 PF02603 Hpr_kinase_N: HPr Ser 31.1 57 0.0012 29.5 3.6 61 41-101 50-112 (127)
131 TIGR00129 fdhD_narQ formate de 31.0 78 0.0017 32.0 4.9 60 60-119 154-219 (237)
132 PRK01018 50S ribosomal protein 30.4 1.8E+02 0.0038 25.1 6.4 49 64-115 24-77 (99)
133 cd01144 BtuF Cobalamin binding 29.8 1.3E+02 0.0028 29.9 6.3 52 547-598 50-108 (245)
134 cd01141 TroA_d Periplasmic bin 29.8 68 0.0015 30.5 4.2 37 63-99 60-97 (186)
135 PRK00724 formate dehydrogenase 29.4 85 0.0018 32.3 5.0 42 545-586 212-253 (263)
136 PTZ00106 60S ribosomal protein 28.8 1.6E+02 0.0034 26.0 5.8 50 546-598 33-87 (108)
137 COG1504 Uncharacterized conser 28.5 2.4E+02 0.0052 25.0 6.6 52 547-598 54-111 (121)
138 PRK13601 putative L7Ae-like ri 28.3 2E+02 0.0043 24.0 6.1 50 546-598 16-69 (82)
139 COG1358 RPL8A Ribosomal protei 28.1 1.9E+02 0.0042 25.9 6.3 48 63-110 34-86 (116)
140 PRK09534 btuF corrinoid ABC tr 28.1 1.3E+02 0.0029 32.3 6.4 52 547-598 112-170 (359)
141 COG1358 RPL8A Ribosomal protei 27.8 1.8E+02 0.004 26.0 6.1 47 545-591 34-85 (116)
142 PRK00724 formate dehydrogenase 27.7 94 0.002 32.0 4.9 59 61-119 184-248 (263)
143 cd01141 TroA_d Periplasmic bin 27.4 1.2E+02 0.0026 28.8 5.4 50 547-596 62-119 (186)
144 cd01139 TroA_f Periplasmic bin 27.1 1.3E+02 0.0027 31.8 6.0 52 64-115 83-147 (342)
145 PRK03379 vitamin B12-transport 26.8 1.5E+02 0.0033 30.0 6.3 38 63-100 63-101 (260)
146 COG4359 Uncharacterized conser 26.6 1.3E+02 0.0029 29.2 5.2 76 541-622 76-155 (220)
147 PRK11778 putative inner membra 25.6 2.4E+02 0.0051 30.1 7.5 30 162-191 226-255 (330)
148 PF00809 Pterin_bind: Pterin b 25.3 2E+02 0.0043 28.4 6.6 64 55-118 53-120 (210)
149 PF14876 RSF: Respiratory grow 24.9 82 0.0018 32.0 3.7 67 10-78 249-316 (374)
150 COG1526 FdhD Uncharacterized p 24.4 1.2E+02 0.0025 31.4 4.8 43 545-587 212-254 (266)
151 cd00852 NifB NifB belongs to a 23.1 2.2E+02 0.0048 24.4 5.8 35 553-588 64-98 (106)
152 PF02634 FdhD-NarQ: FdhD/NarQ 23.1 79 0.0017 31.9 3.3 41 545-585 183-223 (236)
153 cd00852 NifB NifB belongs to a 22.7 2.4E+02 0.0053 24.2 6.0 31 71-102 64-94 (106)
154 PRK01018 50S ribosomal protein 22.6 2.8E+02 0.0061 23.8 6.2 50 546-598 24-78 (99)
155 PRK05583 ribosomal protein L7A 22.4 2.8E+02 0.0061 24.2 6.2 50 64-116 25-78 (104)
156 COG1526 FdhD Uncharacterized p 22.2 1.3E+02 0.0028 31.0 4.6 42 63-104 212-253 (266)
157 PF03060 NMO: Nitronate monoox 21.9 2.8E+02 0.006 29.4 7.4 57 61-117 102-159 (330)
158 cd00636 TroA-like Helical back 21.6 2.4E+02 0.0052 24.4 6.0 37 63-99 52-88 (148)
159 PRK03379 vitamin B12-transport 21.5 2.1E+02 0.0046 29.0 6.2 52 547-598 65-123 (260)
160 TIGR01283 nifE nitrogenase mol 21.5 2.8E+02 0.006 30.9 7.5 45 166-210 303-348 (456)
161 PF02603 Hpr_kinase_N: HPr Ser 21.5 1.1E+02 0.0024 27.6 3.6 45 540-584 67-113 (127)
162 PRK05583 ribosomal protein L7A 21.5 3E+02 0.0065 24.0 6.2 51 546-599 25-79 (104)
163 TIGR01496 DHPS dihydropteroate 21.3 3.7E+02 0.0081 27.4 7.9 64 55-119 57-123 (257)
164 cd03308 CmuA_CmuC_like CmuA_Cm 21.0 7.8E+02 0.017 26.6 10.7 57 58-114 254-311 (378)
165 PF02634 FdhD-NarQ: FdhD/NarQ 20.8 1.2E+02 0.0025 30.7 4.0 58 61-118 155-218 (236)
166 cd01147 HemV-2 Metal binding p 20.8 2E+02 0.0044 28.7 5.9 53 63-115 65-126 (262)
167 cd01968 Nitrogenase_NifE_I Nit 20.7 4.9E+02 0.011 28.4 9.2 45 166-210 264-309 (410)
168 cd00853 NifX NifX belongs to a 20.7 2.8E+02 0.0062 23.6 5.9 31 71-102 60-90 (102)
No 1
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=4e-55 Score=489.71 Aligned_cols=299 Identities=40% Similarity=0.634 Sum_probs=282.5
Q ss_pred hcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhcc
Q psy17074 330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQD 409 (632)
Q Consensus 330 ~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~ 409 (632)
+++++.+.++|.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~qd 83 (519)
T TIGR02339 4 ILKEGTQRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQD 83 (519)
T ss_pred cccCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc--------------------------c------------------------cCCchhhHHHHHHHHhhhcCCccc-c
Q psy17074 410 AEI--------------------------Q------------------------KSDSGEYRGLLEKCAATALSSKLI-H 438 (632)
Q Consensus 410 ~~~--------------------------~------------------------~~~~~~~~~~L~~va~t~l~sK~~-~ 438 (632)
+++ + +++. .+++.|.++|+|+++||+. +
T Consensus 84 ~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~-~~~~~L~~ia~tsl~sk~~~~ 162 (519)
T TIGR02339 84 AEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISP-EDRDLLKKVAETSLTGKASAE 162 (519)
T ss_pred HHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCc-ccHHHHHHHHHhhhccccccc
Confidence 999 0 1111 2357899999999999999 6
Q ss_pred chhhHHHHHHHHHHHHhcc-------cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecc
Q psy17074 439 QQKGFFSKMVVDAVMSLDD-------LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511 (632)
Q Consensus 439 ~~~~~l~~li~~A~~~v~~-------~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~ 511 (632)
.+.++|++|+++|+.++++ .+|+++|+|+++.||+..||++++|++|++++.+++ ||+.++||||+++++
T Consensus 163 ~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~---m~~~i~n~kIlll~~ 239 (519)
T TIGR02339 163 VTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPG---MPKRVKNAKIALLDA 239 (519)
T ss_pred hhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCC---CccccCCCcEEEEec
Confidence 8999999999999999963 377889999999999999999999999999999984 899999999999999
Q ss_pred cchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHH
Q psy17074 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRT 591 (632)
Q Consensus 512 ~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rI 591 (632)
+|++++++.++++.+++++++.+++++|+++++++++.|++.|++||+++++|++.+++||.++||++++++++++|+||
T Consensus 240 ~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~rI 319 (519)
T TIGR02339 240 PLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEKL 319 (519)
T ss_pred cccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 592 MKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 592 a~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
|++|||+++++++++++++||+|++|+++++|+++|++|+|
T Consensus 320 a~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~ 360 (519)
T TIGR02339 320 ARATGAKIVSSIKEITESDLGYAGLVEERKVGDDKMTFVEG 360 (519)
T ss_pred HHHhCCEEeCchhhCChhhccCCceEEEEEECCeEEEEEEc
Confidence 99999999999999999999999999999999999999975
No 2
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.6e-54 Score=485.11 Aligned_cols=303 Identities=74% Similarity=1.109 Sum_probs=287.4
Q ss_pred hcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhcc
Q psy17074 330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQD 409 (632)
Q Consensus 330 ~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~ 409 (632)
+++++++.++|.+++.+|+.||..|+++++|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~ 83 (522)
T cd03340 4 LLKEGTDTSQGKGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQD 83 (522)
T ss_pred cccCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHHhH
Confidence 56788888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc--------------------------------------------------ccCCch---hhHHHHHHHHhhhcCCcc
Q psy17074 410 AEI--------------------------------------------------QKSDSG---EYRGLLEKCAATALSSKL 436 (632)
Q Consensus 410 ~~~--------------------------------------------------~~~~~~---~~~~~L~~va~t~l~sK~ 436 (632)
+++ .+.+.. .+++.|.++|+|+++||+
T Consensus 84 ~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~ 163 (522)
T cd03340 84 AEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKL 163 (522)
T ss_pred hHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCc
Confidence 999 011110 126679999999999999
Q ss_pred ccchhhHHHHHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhh
Q psy17074 437 IHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELK 516 (632)
Q Consensus 437 ~~~~~~~l~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~ 516 (632)
.+.+.++|++++++|+..+++++|.++|+|+++.||+..||++++|++|+++|.+|+|.+||+.++||+|++++++|++.
T Consensus 164 ~~~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~Le~~ 243 (522)
T cd03340 164 IASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVELELK 243 (522)
T ss_pred chhHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeCCCCCC
Confidence 99999999999999999998778889999999999999999999999999999999988899999999999999999999
Q ss_pred hccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcC
Q psy17074 517 AERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACG 596 (632)
Q Consensus 517 ~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tG 596 (632)
+++.+.++.++++++++.+.+.|+++++++++.+++.|++||+|+++|+|.+++||.++||++++++++++|+|||++||
T Consensus 244 ~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~tG 323 (522)
T cd03340 244 AEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVAQATG 323 (522)
T ss_pred ccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 597 GAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 597 a~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
|+++++++++++++||+|++|+++++|+++|++|+|
T Consensus 324 a~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~ 359 (522)
T cd03340 324 GSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTG 359 (522)
T ss_pred CEEeeccccCCccccccceEEEEEEECCEEEEEEEC
Confidence 999999999999999999999999999999999975
No 3
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.8e-54 Score=483.25 Aligned_cols=299 Identities=39% Similarity=0.621 Sum_probs=282.6
Q ss_pred hcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhcc
Q psy17074 330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQD 409 (632)
Q Consensus 330 ~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~ 409 (632)
+++++.+.++|.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+|+|++++|++||
T Consensus 3 ~~~~~~~~~~~~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~ 82 (517)
T cd03343 3 ILKEGTQRTSGRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQD 82 (517)
T ss_pred ccCCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHHH
Confidence 45777888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc--------------------------------------------------ccCCchhhHHHHHHHHhhhcCCccccc
Q psy17074 410 AEI--------------------------------------------------QKSDSGEYRGLLEKCAATALSSKLIHQ 439 (632)
Q Consensus 410 ~~~--------------------------------------------------~~~~~~~~~~~L~~va~t~l~sK~~~~ 439 (632)
+++ .+++. .+++.|.++|+|+++||+.+.
T Consensus 83 ~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~-~~~~~l~~va~ts~~sk~~~~ 161 (517)
T cd03343 83 EEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDP-DDKDTLRKIAKTSLTGKGAEA 161 (517)
T ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCC-CCHHHHHHHHHHhhcccchhh
Confidence 999 01111 146789999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcc------cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccc
Q psy17074 440 QKGFFSKMVVDAVMSLDD------LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIEL 513 (632)
Q Consensus 440 ~~~~l~~li~~A~~~v~~------~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~L 513 (632)
+.+.|++++++|+..+++ .+|+++|+|.+++||+++||++++|++|+++|.||+ |++.++||+|++++++|
T Consensus 162 ~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~---m~~~~~n~~Illl~~~L 238 (517)
T cd03343 162 AKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPG---MPKRVENAKIALLDAPL 238 (517)
T ss_pred HHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCCC---CccccCCCcEEEEeccc
Confidence 999999999999999863 467788999999999999999999999999999986 68999999999999999
Q ss_pred hhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHH
Q psy17074 514 ELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMK 593 (632)
Q Consensus 514 e~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~ 593 (632)
|+++++.++++.+++++++.++.++|+++++++++.|++.|++|||++++|++.+++||.++||++|+++++++|+|||+
T Consensus 239 e~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia~ 318 (517)
T cd03343 239 EVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLAR 318 (517)
T ss_pred cCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 594 ACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 594 ~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
+|||+++++++++++++||+|++|+++++|+++|++|+|
T Consensus 319 ~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~ 357 (517)
T cd03343 319 ATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEG 357 (517)
T ss_pred HhCCEEecchhhCChhhCCccceEEEEEECCeEEEEEEc
Confidence 999999999999999999999999999999999999975
No 4
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.5e-53 Score=476.00 Aligned_cols=300 Identities=27% Similarity=0.429 Sum_probs=281.0
Q ss_pred hcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhcc
Q psy17074 330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQD 409 (632)
Q Consensus 330 ~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~ 409 (632)
+++++.+++.|.+++..|+.||.+|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++||
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~qd 83 (531)
T TIGR02347 4 LLNPKAESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQD 83 (531)
T ss_pred cccCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhh
Confidence 45677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc--------------------------c------------------------cCCchhhHHHHHHHHhhhcCCccccc
Q psy17074 410 AEI--------------------------Q------------------------KSDSGEYRGLLEKCAATALSSKLIHQ 439 (632)
Q Consensus 410 ~~~--------------------------~------------------------~~~~~~~~~~L~~va~t~l~sK~~~~ 439 (632)
+++ + +.....+.+.|.++|+|+++||+.+.
T Consensus 84 ~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~ 163 (531)
T TIGR02347 84 DITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKLPID 163 (531)
T ss_pred hhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhccccchh
Confidence 999 0 11002356789999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcc---cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhh
Q psy17074 440 QKGFFSKMVVDAVMSLDD---LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELK 516 (632)
Q Consensus 440 ~~~~l~~li~~A~~~v~~---~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~ 516 (632)
+.++|++++++|+..+++ .+|+++|++++..||+..||++++|++|++++.+|+ ||+.++||+|++++++|++.
T Consensus 164 ~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~---~~~~~~n~~Ill~~~~le~~ 240 (531)
T TIGR02347 164 LADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPD---MPRRVKNAYILTCNVSLEYE 240 (531)
T ss_pred hHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCccccEEEeeEEEecCcCCCC---CceeccCceEEEEeCCCCCC
Confidence 999999999999999974 367788999999999999999999999999999986 68999999999999999999
Q ss_pred hccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcC-------Cc---EEEEeCCccHHHHHHHHHCCcEEEecCCch
Q psy17074 517 AERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASG-------AQ---VVLSKLPIGDVATQYFADRDMFCAGRVPEE 586 (632)
Q Consensus 517 ~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~g-------v~---vvi~~~~I~~~al~~L~~~~I~~v~~v~~~ 586 (632)
+++..+++.+++++++..+++.|++++++++++|++.| ++ ||+|+++|++.+++||.++||+++++++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~rv~~~ 320 (531)
T TIGR02347 241 KTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRRAKRR 320 (531)
T ss_pred ccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEccCCHH
Confidence 99999999999999999999999999999999999976 25 999999999999999999999999999999
Q ss_pred hHHHHHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 587 DLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 587 ~L~rIa~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
+|+|||++|||+++++++++++++||+|++|+++.+|+++|++|+|
T Consensus 321 ~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~ 366 (531)
T TIGR02347 321 NMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEE 366 (531)
T ss_pred HHHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEc
Confidence 9999999999999999999999999999999999999999999975
No 5
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-53 Score=478.10 Aligned_cols=303 Identities=31% Similarity=0.518 Sum_probs=281.9
Q ss_pred hhhhccc--CccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHH
Q psy17074 327 QILLLKE--GTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDI 404 (632)
Q Consensus 327 ~~~~~~~--~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~ 404 (632)
|..++++ +.+++.|.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+|+|++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~~~ 89 (532)
T TIGR02343 10 PFIIIKDQDKKKRLKGLEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPIAKLMVEL 89 (532)
T ss_pred CchhhccccccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHHHH
Confidence 3345666 56788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccc--------------------------------------------------ccCC-chhhHHHHHHHHhhhcC
Q psy17074 405 AKSQDAEI--------------------------------------------------QKSD-SGEYRGLLEKCAATALS 433 (632)
Q Consensus 405 a~~q~~~~--------------------------------------------------~~~~-~~~~~~~L~~va~t~l~ 433 (632)
|++||+++ .+.+ ...+++.|.++|+|+++
T Consensus 90 a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~ 169 (532)
T TIGR02343 90 SKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLG 169 (532)
T ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhc
Confidence 99999999 0111 01236789999999999
Q ss_pred CccccchhhHHHHHHHHHHHHhcc----cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEe
Q psy17074 434 SKLIHQQKGFFSKMVVDAVMSLDD----LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALL 509 (632)
Q Consensus 434 sK~~~~~~~~l~~li~~A~~~v~~----~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~ 509 (632)
||+.+.+.+.|++++++|+..+.+ .+|+++|+|+++.||+++||++++|++|++++.|++ ||+.++||||+++
T Consensus 170 sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~---m~~~~~n~kI~l~ 246 (532)
T TIGR02343 170 SKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQ---MPKEVKDAKIAIL 246 (532)
T ss_pred cchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccceeEeeEEEecCcCCCC---CCeeecCCcEEEE
Confidence 998888899999999999999852 578899999999999999999999999999999985 7899999999999
Q ss_pred cccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHH
Q psy17074 510 NIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK 589 (632)
Q Consensus 510 ~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~ 589 (632)
+++|++++++.++++.+++++++..+.++|+++++++++.|++.|++||||+++||+.+++||.++||++|+++++++|+
T Consensus 247 ~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~l~ 326 (532)
T TIGR02343 247 TCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHELE 326 (532)
T ss_pred EeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcC--eEEEEecC
Q psy17074 590 RTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGS--ERDTLNRE 632 (632)
Q Consensus 590 rIa~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~ 632 (632)
|||++|||+++++++++++++||+|++|+++++|+ ++|++|+|
T Consensus 327 ~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~ 371 (532)
T TIGR02343 327 LIAIATGGRIVPRFEELSEDKLGKAGLVREISFGTTKDRMLVIEQ 371 (532)
T ss_pred HHHHHhCCEEecccccCCHhHCcccceEEEEEecCCcceEEEEEC
Confidence 99999999999999999999999999999999998 48898864
No 6
>KOG0361|consensus
Probab=100.00 E-value=2.2e-54 Score=434.65 Aligned_cols=309 Identities=75% Similarity=1.143 Sum_probs=295.2
Q ss_pred ccchhhhcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHH
Q psy17074 324 RQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVD 403 (632)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~ 403 (632)
+++|..++++|+....|.-.+.+|+.||..+++.++|||||+||||+|++..|+++|||||+||||.|++-||+|+.|++
T Consensus 2 m~~~ii~lkegtd~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlVd 81 (543)
T KOG0361|consen 2 MQPPIILLKEGTDPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLVD 81 (543)
T ss_pred CCCCEEEeecccCcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHHH
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccc-----------------------------------------------------ccCCchhhHHHHHHHHhh
Q psy17074 404 IAKSQDAEI-----------------------------------------------------QKSDSGEYRGLLEKCAAT 430 (632)
Q Consensus 404 ~a~~q~~~~-----------------------------------------------------~~~~~~~~~~~L~~va~t 430 (632)
+|++||.++ ...+....++.|.++|.|
T Consensus 82 ia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T 161 (543)
T KOG0361|consen 82 IARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAAT 161 (543)
T ss_pred HHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHH
Confidence 999999999 001112347789999999
Q ss_pred hcCCccccchhhHHHHHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEec
Q psy17074 431 ALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLN 510 (632)
Q Consensus 431 ~l~sK~~~~~~~~l~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~ 510 (632)
+|+||.+.+..++|+++++||+..+....+++.|.|.|++||++.||.+++|+.|.+.|.+.+|+++|+++.||||+++|
T Consensus 162 ~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~Ln 241 (543)
T KOG0361|consen 162 ALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLN 241 (543)
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEEEEe
Confidence 99999999999999999999999998777889999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHH
Q psy17074 511 IELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKR 590 (632)
Q Consensus 511 ~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~r 590 (632)
..||.+..+.++.+.+.++++++.+...||+.+.+.+++|.++|.+||++.=.|.|.|.+||..++|-|-.|++.+||.|
T Consensus 242 vELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~R 321 (543)
T KOG0361|consen 242 VELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLNR 321 (543)
T ss_pred eeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 591 TMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 591 Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
+..++|+++.++..++.++.||+|..|+++++|+++|-+|+|
T Consensus 322 v~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Feg 363 (543)
T KOG0361|consen 322 VMQACGGSIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEG 363 (543)
T ss_pred HHHhcCcchhhhhhhcchhhcchhhhHHHHhhcchhhhhhcC
Confidence 999999999999999999999999999999999999999986
No 7
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.1e-53 Score=474.93 Aligned_cols=301 Identities=31% Similarity=0.503 Sum_probs=280.2
Q ss_pred hhcccC--ccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHH
Q psy17074 329 LLLKEG--TENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAK 406 (632)
Q Consensus 329 ~~~~~~--~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~ 406 (632)
.+++++ .+..+|.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+|+|++++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~~~a~ 87 (526)
T cd03339 8 IIVREQEKKKRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVELSK 87 (526)
T ss_pred EEecCCCccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHHHHHHHH
Confidence 345666 468899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccc--------------------------------------------------ccCCc-hhhHHHHHHHHhhhcCCc
Q psy17074 407 SQDAEI--------------------------------------------------QKSDS-GEYRGLLEKCAATALSSK 435 (632)
Q Consensus 407 ~q~~~~--------------------------------------------------~~~~~-~~~~~~L~~va~t~l~sK 435 (632)
+|++++ .+.+. ..+.+.|.++|+|+++||
T Consensus 88 ~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk 167 (526)
T cd03339 88 SQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSK 167 (526)
T ss_pred hhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhccc
Confidence 999999 01110 124678999999999999
Q ss_pred cccchhhHHHHHHHHHHHHhcc----cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecc
Q psy17074 436 LIHQQKGFFSKMVVDAVMSLDD----LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511 (632)
Q Consensus 436 ~~~~~~~~l~~li~~A~~~v~~----~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~ 511 (632)
+.+.+.+.|++++++|+..+.+ .+|++.|+|.+++||+..||++++|++|++++.|++ |++.++||||+++++
T Consensus 168 ~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~---m~~~~~n~kI~ll~~ 244 (526)
T cd03339 168 IVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQ---MPKEVKDAKIAILTC 244 (526)
T ss_pred chhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHcceeeeEEEecccCCCC---CCceecCCCEEEEEe
Confidence 8888899999999999998852 467789999999999999999999999999999986 789999999999999
Q ss_pred cchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHH
Q psy17074 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRT 591 (632)
Q Consensus 512 ~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rI 591 (632)
+|++++++.++++.++++++++++.++|+++++++++.+++.|++||||+++||+.+++||.++||++|+++++++|+||
T Consensus 245 ~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~LerI 324 (526)
T cd03339 245 PFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIELI 324 (526)
T ss_pred cccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEeecccCCCCCCCeeeeEEEEEEEcC--eEEEEecC
Q psy17074 592 MKACGGAVMTTAHDLNDSVLGTCAVFDERQIGS--ERDTLNRE 632 (632)
Q Consensus 592 a~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~ 632 (632)
|++|||+++++++++++++||+|+.|+++.+|+ ++|+||+|
T Consensus 325 a~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g 367 (526)
T cd03339 325 AIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEG 367 (526)
T ss_pred HHHhCCEEecchhhCChhhcccCceEEEEEecCCCcEEEEEEC
Confidence 999999999999999999999999999999996 68898865
No 8
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.8e-53 Score=470.84 Aligned_cols=298 Identities=34% Similarity=0.496 Sum_probs=279.2
Q ss_pred cccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcC--CCCeEEccChHHHHhhccccChHhHHHHHHHHhc
Q psy17074 331 LKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQ--NGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQ 408 (632)
Q Consensus 331 ~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~--~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q 408 (632)
++++.+.++|.+++..|+.||..|+++++|||||+||+|||+++ +|+++|||||+||+++|+++||+|+|++++|++|
T Consensus 2 ~~~~~~~~~~~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q 81 (517)
T cd03336 2 LKDGAQEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQ 81 (517)
T ss_pred CCCccccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHH
Confidence 45566788899999999999999999999999999999999998 5999999999999999999999999999999999
Q ss_pred cccc--------------------------------------------------ccCCc--hhhHHHHHHHHhhhcCCcc
Q psy17074 409 DAEI--------------------------------------------------QKSDS--GEYRGLLEKCAATALSSKL 436 (632)
Q Consensus 409 ~~~~--------------------------------------------------~~~~~--~~~~~~L~~va~t~l~sK~ 436 (632)
|+++ .+.+. ..+++.|.++|+|+++||+
T Consensus 82 d~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~ 161 (517)
T cd03336 82 DDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKI 161 (517)
T ss_pred HhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccc
Confidence 9999 01111 1235789999999999999
Q ss_pred ccchhhHHHHHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhh
Q psy17074 437 IHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELK 516 (632)
Q Consensus 437 ~~~~~~~l~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~ 516 (632)
.+.++++|++|+++|+..+++.+++++|++++++||++.||++++|+++++++.++ ||++++||||++++++|+++
T Consensus 162 ~~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~~----~~~~~~n~kIli~~~~le~~ 237 (517)
T cd03336 162 LTQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGVN----QPKRIENAKILIANTPMDTD 237 (517)
T ss_pred cchhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCccceEEEeeEEEecccCCC----CCCeeccccEEEEecCCCcc
Confidence 99999999999999999998778899999999999999999999999999987653 78999999999999999999
Q ss_pred hccC-CceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHc
Q psy17074 517 AERD-NAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKAC 595 (632)
Q Consensus 517 ~~~~-~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~t 595 (632)
+++. ++++.+++++++..+.+.|+++++++++.|++.|+++++|++.|++.+++||.++||++|+++++++|+|||++|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~t 317 (517)
T cd03336 238 KIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALVT 317 (517)
T ss_pred cccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHh
Confidence 9987 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 596 GGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 596 Ga~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
||+++++++++++++||+|++|++..+|+++|++|+|
T Consensus 318 Ga~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~ 354 (517)
T cd03336 318 GGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSG 354 (517)
T ss_pred CCEEecccCCCCcccccccceEEEEEECCeEEEEEEc
Confidence 9999999999999999999999999999999999974
No 9
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=5.2e-53 Score=473.09 Aligned_cols=304 Identities=34% Similarity=0.490 Sum_probs=284.6
Q ss_pred cchhhhcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcC-----CCCeEEccChHHHHhhccccChHhH
Q psy17074 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQ-----NGKSTISNDGATIMKLLDIVHPAAK 399 (632)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~-----~g~~~ITnDG~tIlk~l~i~hP~ak 399 (632)
+.|..+++++++.++|.+++..|+.||..|+++++|||||+||+|||+++ .|+++|||||+|||++|+++||+|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~ak 84 (533)
T PTZ00212 5 NVPPQVLKQGAQEEKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAAK 84 (533)
T ss_pred ccchHHhcCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHHHH
Confidence 45566789999999999999999999999999999999999999999998 6999999999999999999999999
Q ss_pred HHHHHHHhccccc--------------------------------------------------ccCCch--hhHHHHHHH
Q psy17074 400 TLVDIAKSQDAEI--------------------------------------------------QKSDSG--EYRGLLEKC 427 (632)
Q Consensus 400 ll~~~a~~q~~~~--------------------------------------------------~~~~~~--~~~~~L~~v 427 (632)
|++++|++||+++ .+.+.. .+++.|.++
T Consensus 85 ll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~v 164 (533)
T PTZ00212 85 ILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNI 164 (533)
T ss_pred HHHHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHH
Confidence 9999999999999 011111 125789999
Q ss_pred HhhhcCCccccchhhHHHHHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEE
Q psy17074 428 AATALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIA 507 (632)
Q Consensus 428 a~t~l~sK~~~~~~~~l~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIl 507 (632)
|+|+++||+.+.+.+.|++++++|+..+.+.++++.|++++++||++.||++++|+++++++.++ ||++++||||+
T Consensus 165 a~t~l~sk~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~~----~~~~i~n~kIl 240 (533)
T PTZ00212 165 ARTTLSSKLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGVG----QPKRLENCKIL 240 (533)
T ss_pred HHHHhcccccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCccccEEEEeEEEecccCCC----CCccccCCcEE
Confidence 99999999988899999999999999998778899999999999999999999999999997653 78999999999
Q ss_pred EecccchhhhccC-CceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCch
Q psy17074 508 LLNIELELKAERD-NAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEE 586 (632)
Q Consensus 508 l~~~~Le~~~~~~-~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~ 586 (632)
+++++||+++++. ++++.+++++++..+.++|+++++++++.|++.|+++++++++|++.+++||.++||++|++++++
T Consensus 241 l~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v~~~ 320 (533)
T PTZ00212 241 VANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHADFD 320 (533)
T ss_pred EEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecCCHH
Confidence 9999999999997 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 587 DLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 587 ~L~rIa~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
+++|||++|||+++++++++++++||+|++|+++.+|+++|++|+|
T Consensus 321 ~l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~ 366 (533)
T PTZ00212 321 GMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSG 366 (533)
T ss_pred HHHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEECCeEEEEEEc
Confidence 9999999999999999999999999999999999999999999975
No 10
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.1e-53 Score=475.07 Aligned_cols=299 Identities=28% Similarity=0.523 Sum_probs=279.1
Q ss_pred hcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhcc
Q psy17074 330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQD 409 (632)
Q Consensus 330 ~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~ 409 (632)
+++++.+..+|.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q~ 83 (525)
T TIGR02344 4 VLNQNTKRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQD 83 (525)
T ss_pred eccCCCccccHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhhh
Confidence 45667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc--------------------------------------------------ccCCchhhHHHHHHHHhhhcCCccccc
Q psy17074 410 AEI--------------------------------------------------QKSDSGEYRGLLEKCAATALSSKLIHQ 439 (632)
Q Consensus 410 ~~~--------------------------------------------------~~~~~~~~~~~L~~va~t~l~sK~~~~ 439 (632)
+++ .+.+. .+.+.|.++++|+++||+.+.
T Consensus 84 ~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~-~~~~~l~~i~~t~l~sk~~~~ 162 (525)
T TIGR02344 84 EEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDV-NDDAAMLKLIQSCIGTKFVSR 162 (525)
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCC-CCHHHHHHHHHHhhccccchh
Confidence 999 01111 145679999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcc-------cCCCC-cEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecc
Q psy17074 440 QKGFFSKMVVDAVMSLDD-------LLPLN-MIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511 (632)
Q Consensus 440 ~~~~l~~li~~A~~~v~~-------~~~~~-~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~ 511 (632)
|.+.|++++++|+..++. .+|++ +|+|++++||+++||++++|++|++++.++ +||++++||+|+++++
T Consensus 163 ~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~---~m~~~~~n~kIlll~~ 239 (525)
T TIGR02344 163 WSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHP---KMRRYIENPRIVLLDC 239 (525)
T ss_pred HHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCC---CCccccCCCCEEEEec
Confidence 999999999999999962 23433 489999999999999999999999998877 4899999999999999
Q ss_pred cchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHH
Q psy17074 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRT 591 (632)
Q Consensus 512 ~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rI 591 (632)
+|++.+++.++++.+++++++++++++|++++++++++|.+.|++||+|+++|++.+++||.++||++++++++++|+||
T Consensus 240 ~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~LerI 319 (525)
T TIGR02344 240 PLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRI 319 (525)
T ss_pred ccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEeecccCCCCCCCee-eeEEEEEEEcCeEEEEecC
Q psy17074 592 MKACGGAVMTTAHDLNDSVLGT-CAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 592 a~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~ 632 (632)
|++|||+++++++++++++||+ |+.|+++++|+++|++|+|
T Consensus 320 a~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g 361 (525)
T TIGR02344 320 ARACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTE 361 (525)
T ss_pred HHHhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEc
Confidence 9999999999999999999999 9999999999999999975
No 11
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.2e-53 Score=471.19 Aligned_cols=303 Identities=70% Similarity=1.081 Sum_probs=286.6
Q ss_pred hhcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhc
Q psy17074 329 LLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQ 408 (632)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q 408 (632)
.+++++.+.++|.+++..|+.||.+|+++|+|||||+||+|||+++.| ++|||||+|||++|+++||+|+|++++|++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a~~q 83 (522)
T TIGR02345 5 VLLKEGTDTSQGKGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIAKSQ 83 (522)
T ss_pred chhcCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHHHHH
Confidence 467888889999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred cccc--------------------------------------------------ccCCc--hhhHHHHHHHHhhhcCCcc
Q psy17074 409 DAEI--------------------------------------------------QKSDS--GEYRGLLEKCAATALSSKL 436 (632)
Q Consensus 409 ~~~~--------------------------------------------------~~~~~--~~~~~~L~~va~t~l~sK~ 436 (632)
|+++ .+.+. ..+.+.|.++|+|+++||+
T Consensus 84 ~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~ 163 (522)
T TIGR02345 84 DSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKL 163 (522)
T ss_pred HHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhcccc
Confidence 9999 01110 0135689999999999999
Q ss_pred ccchhhHHHHHHHHHHHHhcc-cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchh
Q psy17074 437 IHQQKGFFSKMVVDAVMSLDD-LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELEL 515 (632)
Q Consensus 437 ~~~~~~~l~~li~~A~~~v~~-~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~ 515 (632)
.+.++++|++++++|+..++. .+|+++|+|+++.||+..||++++|++|+++|.+|+|.+||+.++||+|++++++|++
T Consensus 164 ~~~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~~Le~ 243 (522)
T TIGR02345 164 IAHEKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNVELEL 243 (522)
T ss_pred ccchHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHHhcceecceEEecccCccccccCCceeccceEEEEecCccc
Confidence 999999999999999999974 5888999999999999999999999999999999998889999999999999999999
Q ss_pred hhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHc
Q psy17074 516 KAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKAC 595 (632)
Q Consensus 516 ~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~t 595 (632)
.+.+.+..+.++++++++++.+.|++++.++++++++.|++||+|+++|++.+++||.++||++++++++++++|||++|
T Consensus 244 ~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ria~~t 323 (522)
T TIGR02345 244 KAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRVVKAC 323 (522)
T ss_pred CccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 596 GGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 596 Ga~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
||+++++++++++++||+|+.|+++++|+++|++|+|
T Consensus 324 ga~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g 360 (522)
T TIGR02345 324 GGSIQSTTSDLEADVLGTCALFEERQIGSERYNYFTG 360 (522)
T ss_pred CCeEEcchhhCChhhccCCceEEEEEECCeEEEEEEc
Confidence 9999999999999999999999999999999999975
No 12
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.5e-52 Score=467.72 Aligned_cols=294 Identities=35% Similarity=0.536 Sum_probs=273.2
Q ss_pred cccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc---
Q psy17074 336 ENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI--- 412 (632)
Q Consensus 336 ~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~--- 412 (632)
+..+|.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+|+|++++|++|++++
T Consensus 2 ~~~~~~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDG 81 (527)
T cd03335 2 ERTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDG 81 (527)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCC
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----------------------cc---------------------C--Cch-hhHHHHHHHHhhhcCCccccchhhHHH
Q psy17074 413 -----------------------QK---------------------S--DSG-EYRGLLEKCAATALSSKLIHQQKGFFS 445 (632)
Q Consensus 413 -----------------------~~---------------------~--~~~-~~~~~L~~va~t~l~sK~~~~~~~~l~ 445 (632)
+| . ... .+++.|.++|+|+++||+.+.+.++|+
T Consensus 82 TTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls 161 (527)
T cd03335 82 TTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFA 161 (527)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHH
Confidence 00 0 110 156789999999999999988899999
Q ss_pred HHHHHHHHHhc---c----cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhhc
Q psy17074 446 KMVVDAVMSLD---D----LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAE 518 (632)
Q Consensus 446 ~li~~A~~~v~---~----~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~ 518 (632)
+++++|+..++ . .+|+++|+|+++.||+..+|++++|++|++++.++ +||+.++||+|++++++|++.++
T Consensus 162 ~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~---~m~~~i~n~kIlll~~~Le~~~~ 238 (527)
T cd03335 162 NMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQ---GMPTRVKNAKIACLDFNLQKTKM 238 (527)
T ss_pred HHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccCCC---CCcccccCCcEEEEeccCCCCcc
Confidence 99999999984 1 37889999999999999999999999999999988 48999999999999999999999
Q ss_pred cCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCCe
Q psy17074 519 RDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGA 598 (632)
Q Consensus 519 ~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ 598 (632)
+.++++.++++.+++.+.++|+++++++++.|++.|++||||+++||+.+++||.++||++++++++++|+|||++|||+
T Consensus 239 ~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~tGa~ 318 (527)
T cd03335 239 KLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGAT 318 (527)
T ss_pred ccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccCC------CCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 599 VMTTAHDL------NDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 599 ii~~l~~l------~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
++++++++ ++++||+|++|+++++|+++|++|+|
T Consensus 319 ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g 358 (527)
T cd03335 319 LVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKG 358 (527)
T ss_pred EecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEc
Confidence 99998655 34589999999999999999999975
No 13
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.2e-52 Score=463.36 Aligned_cols=294 Identities=31% Similarity=0.478 Sum_probs=275.6
Q ss_pred cccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc---
Q psy17074 336 ENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI--- 412 (632)
Q Consensus 336 ~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~--- 412 (632)
.+..+.+++.+|+.||..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++||+++
T Consensus 2 ~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDG 81 (515)
T cd03338 2 DKEKPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDG 81 (515)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCC
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----------------------------------------------ccCCchhhHHHHHHHHhhhcCCccccchhhHHH
Q psy17074 413 -----------------------------------------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFS 445 (632)
Q Consensus 413 -----------------------------------------------~~~~~~~~~~~L~~va~t~l~sK~~~~~~~~l~ 445 (632)
.+++. .+.+.|.++|+|+++||+.+.+++.|+
T Consensus 82 Ttt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~-~~~~~l~~va~ts~~sK~~~~~~~~ls 160 (515)
T cd03338 82 TTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDL-NDRESLIKSATTSLNSKVVSQYSSLLA 160 (515)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCHHHHHHHHHHHhccccchhhHHHHH
Confidence 11111 246789999999999999999999999
Q ss_pred HHHHHHHHHhcc-----cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhhccC
Q psy17074 446 KMVVDAVMSLDD-----LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERD 520 (632)
Q Consensus 446 ~li~~A~~~v~~-----~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~~ 520 (632)
+++++|+.++++ .+|+++|+|.+..||+++||++++|++|++++.++++ ||+.++||+|++++|+|++.+++.
T Consensus 161 ~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~--~p~~i~n~ki~ll~~~le~~~~~~ 238 (515)
T cd03338 161 PIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAG--GPTRIEKAKIGLIQFCLSPPKTDM 238 (515)
T ss_pred HHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcCC--CCccccCCcEEEEecccccccccc
Confidence 999999999973 4788999999999999999999999999999998753 489999999999999999999999
Q ss_pred CceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCc-----cHHHHHHHHHCCcEEEecCCchhHHHHHHHc
Q psy17074 521 NAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVATQYFADRDMFCAGRVPEEDLKRTMKAC 595 (632)
Q Consensus 521 ~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I-----~~~al~~L~~~~I~~v~~v~~~~L~rIa~~t 595 (632)
..++.++++++++.+.++|+++++++++.|++.|++||||+++| ++.+++||.++||++|+++++++|+|||++|
T Consensus 239 ~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~~t 318 (515)
T cd03338 239 DNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKTI 318 (515)
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 8999999999999999999999999999999
Q ss_pred CCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 596 GGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 596 Ga~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
||+++++++++++++||+|++|+++++|+++|++|++
T Consensus 319 Ga~ii~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~ 355 (515)
T cd03338 319 GCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITG 355 (515)
T ss_pred CCEEecccccCCHhhCCCCceEEEEEECCeEEEEEEe
Confidence 9999999999999999999999999999999999974
No 14
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-51 Score=461.24 Aligned_cols=292 Identities=30% Similarity=0.476 Sum_probs=274.1
Q ss_pred cCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc-----
Q psy17074 338 SQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI----- 412 (632)
Q Consensus 338 ~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~----- 412 (632)
..+.+++.+|+.||..|+++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++||+++
T Consensus 5 ~~~~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGTt 84 (517)
T TIGR02342 5 DKPTDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDGTT 84 (517)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCCcc
Confidence 456778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------------------------------------------ccCCchhhHHHHHHHHhhhcCCccccchhhHHHHH
Q psy17074 413 ---------------------------------------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKM 447 (632)
Q Consensus 413 ---------------------------------------------~~~~~~~~~~~L~~va~t~l~sK~~~~~~~~l~~l 447 (632)
.+.+. .+++.|.++|+|+++||+.+.+.++|+++
T Consensus 85 t~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~-~~~~~l~~va~tsl~sK~~~~~~~~ls~l 163 (517)
T TIGR02342 85 SVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDL-SDREILIKSATTSLSSKVVSQYSSLLAPL 163 (517)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCc-cCHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 11111 24678999999999999999999999999
Q ss_pred HHHHHHHhcc-----cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhhccCCc
Q psy17074 448 VVDAVMSLDD-----LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNA 522 (632)
Q Consensus 448 i~~A~~~v~~-----~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~~~~ 522 (632)
+++|+..+++ .+|+++|+|+++.||+..+|++++|++|++++.++. +||+.++||||++++|+|++++++...
T Consensus 164 ~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~--~mpk~i~n~kI~ll~~~Le~~~~~~~~ 241 (517)
T TIGR02342 164 AVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASRSA--GGPTRIEKAKIGLIQFQISPPKTDMEN 241 (517)
T ss_pred HHHHHHHHhccccCCccCHHHeeEEeccCCChhhcEEEeeEEEeccccccC--CCCccccCCcEEEEecCCCCCcccccc
Confidence 9999999964 478899999999999999999999999999998842 489999999999999999999999999
Q ss_pred eEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCc-----cHHHHHHHHHCCcEEEecCCchhHHHHHHHcCC
Q psy17074 523 EIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVATQYFADRDMFCAGRVPEEDLKRTMKACGG 597 (632)
Q Consensus 523 ~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I-----~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa 597 (632)
++.++++++++.++++|+++++++++.+++.|++||+|+++| ++.+++||.++||++|+++++++|+|||++|||
T Consensus 242 ~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~tGa 321 (517)
T TIGR02342 242 QVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICKTIGC 321 (517)
T ss_pred eEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred eEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 598 AVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 598 ~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
+++++++++++++||+|+.|+++++|+++|++|++
T Consensus 322 ~ii~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~ 356 (517)
T TIGR02342 322 KPIASIDHFTADKLGSAELVEEVTTDGGKIIKITG 356 (517)
T ss_pred EEEcchhhcCcccCcCCceEEEEEECCeEEEEEEc
Confidence 99999999999999999999999999999998864
No 15
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.4e-51 Score=460.30 Aligned_cols=295 Identities=37% Similarity=0.534 Sum_probs=274.0
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc--
Q psy17074 335 TENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI-- 412 (632)
Q Consensus 335 ~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~-- 412 (632)
.++++|.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+|+|++++|++||+++
T Consensus 5 ~~~~~~~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GD 84 (536)
T TIGR02340 5 GERTSGQDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVGD 84 (536)
T ss_pred cceecHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhCC
Confidence 457788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------------------------cc-----------------------CCch-hhHHHHHHHHhhhcCCccccchhhHH
Q psy17074 413 ------------------------QK-----------------------SDSG-EYRGLLEKCAATALSSKLIHQQKGFF 444 (632)
Q Consensus 413 ------------------------~~-----------------------~~~~-~~~~~L~~va~t~l~sK~~~~~~~~l 444 (632)
+| .... .+.+.|.++|+|+++||+.+.+++.|
T Consensus 85 GTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l 164 (536)
T TIGR02340 85 GTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFF 164 (536)
T ss_pred ChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHH
Confidence 00 0010 14677999999999999999999999
Q ss_pred HHHHHHHHHHhc--c-----cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhh
Q psy17074 445 SKMVVDAVMSLD--D-----LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKA 517 (632)
Q Consensus 445 ~~li~~A~~~v~--~-----~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~ 517 (632)
++++++|+..++ + .+|+++|+++++.||+..+|++++|++|+++|.++ +||+.++||+|++++++|++.+
T Consensus 165 s~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~---~m~~~~~n~kIli~~~~L~~~~ 241 (536)
T TIGR02340 165 SNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRASQ---QMPKRIKKAKIACLDFNLQKQK 241 (536)
T ss_pred HHHHHHHHHHHhcccccCccccchHHeEEEEecCCCccccEEEEEEEEecccCCC---CCcceecCCcEEEEecCCCCCc
Confidence 999999999985 1 36889999999999999999999999999999988 4899999999999999999999
Q ss_pred ccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCC
Q psy17074 518 ERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGG 597 (632)
Q Consensus 518 ~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa 597 (632)
++.++++.++++.+++.+.++|++++.++++.|++.|++||+++++|++.+++||.++||++++++++++|+|||++|||
T Consensus 242 ~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~tGa 321 (536)
T TIGR02340 242 MALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGG 321 (536)
T ss_pred ccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeecccCC------CCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 598 AVMTTAHDL------NDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 598 ~ii~~l~~l------~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
++++++.++ ++++||+|++|+++++|+++|++|+|
T Consensus 322 ~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~ 362 (536)
T TIGR02340 322 TLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKG 362 (536)
T ss_pred EEecchhhcCccccccccccccCceEEEEEECCeEEEEEEc
Confidence 999998554 45569999999999999999999975
No 16
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4e-51 Score=456.08 Aligned_cols=299 Identities=31% Similarity=0.472 Sum_probs=278.4
Q ss_pred hcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCC--CCeEEccChHHHHhhccccChHhHHHHHHHHh
Q psy17074 330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQN--GKSTISNDGATIMKLLDIVHPAAKTLVDIAKS 407 (632)
Q Consensus 330 ~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~--g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~ 407 (632)
+++++.+.+++.+++..|+.||.+|+++++|||||+||+|||+++. |+++|||||+|||++|+++||+|+|++++|++
T Consensus 2 ~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~~ 81 (519)
T TIGR02341 2 IFKDNAQEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSKV 81 (519)
T ss_pred CccCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHH
Confidence 4567778889999999999999999999999999999999999985 99999999999999999999999999999999
Q ss_pred ccccc--------------------------------------------------ccCCch--hhHHHHHHHHhhhcCCc
Q psy17074 408 QDAEI--------------------------------------------------QKSDSG--EYRGLLEKCAATALSSK 435 (632)
Q Consensus 408 q~~~~--------------------------------------------------~~~~~~--~~~~~L~~va~t~l~sK 435 (632)
||+++ .+.+.. .+++.|.++|+|+++||
T Consensus 82 qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~sk 161 (519)
T TIGR02341 82 QDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSK 161 (519)
T ss_pred hHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhh
Confidence 99999 011100 13578999999999999
Q ss_pred cccchhhHHHHHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchh
Q psy17074 436 LIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELEL 515 (632)
Q Consensus 436 ~~~~~~~~l~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~ 515 (632)
+.+.+.+.|++++++|+..+.+..+.++|++.++.||++.+|++++|+++++++.++ ||+.++||+|++++++|++
T Consensus 162 i~~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~~----~~~~~~n~~Ili~~~~Le~ 237 (519)
T TIGR02341 162 ILSQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDSYLDEGFLLEKKIGVN----QPKRIENAKILIANTPMDT 237 (519)
T ss_pred hhhhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcccceEEeeEEEeccCCCC----CceeeccccEEEEecCCCC
Confidence 998999999999999999997656778899999999999999999999999997653 7899999999999999999
Q ss_pred hhccC-CceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHH
Q psy17074 516 KAERD-NAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKA 594 (632)
Q Consensus 516 ~~~~~-~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~ 594 (632)
.+++. ++++.+++++++..+.+.|++++.++++.|++.|+++++|++.|++.+++||.++||++++++++.+|+|||++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~~ 317 (519)
T TIGR02341 238 DKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLALV 317 (519)
T ss_pred CccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHHHH
Confidence 99887 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 595 CGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 595 tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
|||+++++++++++++||+|+.|+++.+|+++|++|+|
T Consensus 318 tGa~ii~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~ 355 (519)
T TIGR02341 318 TGGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSG 355 (519)
T ss_pred hCCEEecccccCCccccccCceEEEEEECCEEEEEEEc
Confidence 99999999999999999999999999999999999974
No 17
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7e-51 Score=455.33 Aligned_cols=298 Identities=26% Similarity=0.411 Sum_probs=275.1
Q ss_pred hhcccCccccCCc-hhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHh
Q psy17074 329 LLLKEGTENSQGK-PQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKS 407 (632)
Q Consensus 329 ~~~~~~~~~~~~~-~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~ 407 (632)
.+++++....+|. +++..|+.||..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||+|+|++++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a~s 83 (531)
T TIGR02346 4 SLLKEGYRHMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASEM 83 (531)
T ss_pred ccccCCcccccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHHHH
Confidence 3456665666665 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc--------------------------------------------------c-cCCchhhHHHHHHHHhhhcCCcc
Q psy17074 408 QDAEI--------------------------------------------------Q-KSDSGEYRGLLEKCAATALSSKL 436 (632)
Q Consensus 408 q~~~~--------------------------------------------------~-~~~~~~~~~~L~~va~t~l~sK~ 436 (632)
||+++ . +++...+.+.|.++++|+++||+
T Consensus 84 qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~ 163 (531)
T TIGR02346 84 QENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQ 163 (531)
T ss_pred HhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhcccc
Confidence 99999 0 11111236789999999999999
Q ss_pred ccchhhHHHHHHHHHHHHhcc----cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEeccc
Q psy17074 437 IHQQKGFFSKMVVDAVMSLDD----LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIE 512 (632)
Q Consensus 437 ~~~~~~~l~~li~~A~~~v~~----~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~ 512 (632)
.+. +++|++++++|+..++. .++++.|+|+++.||+.+||++++|++|++++. .||+.++||||+++++|
T Consensus 164 ~~~-~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~~-----~~~k~i~n~kI~l~~~~ 237 (531)
T TIGR02346 164 YGN-EDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREAE-----GSVKRVKNAKVAVFSCP 237 (531)
T ss_pred Cch-HHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhceeEeeeEEeccCC-----CCceeccCCCEEEEecC
Confidence 877 99999999999999973 578899999999999999999999999999843 26899999999999999
Q ss_pred chhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHH
Q psy17074 513 LELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTM 592 (632)
Q Consensus 513 Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa 592 (632)
+++.+++.++++.++++.++..+.+.|+++++++++.+++.|++||||+++|+|.+++||.++||+||+++++.+|+|||
T Consensus 238 l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~Ia 317 (531)
T TIGR02346 238 LDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRLC 317 (531)
T ss_pred cCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 593 KACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 593 ~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
++|||+++++++++++++||+|++|+++++|+++|++|++
T Consensus 318 ~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~ 357 (531)
T TIGR02346 318 KTVGATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQ 357 (531)
T ss_pred HHHCCEEecccccCCHhHccccceEEEEEECCEEEEEEEc
Confidence 9999999999999999999999999999999999999864
No 18
>KOG0358|consensus
Probab=100.00 E-value=1.2e-51 Score=414.32 Aligned_cols=292 Identities=29% Similarity=0.464 Sum_probs=270.0
Q ss_pred ccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc----
Q psy17074 337 NSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI---- 412 (632)
Q Consensus 337 ~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~---- 412 (632)
..+..++|.+||.|+++++|++||||||+||||||++..|+++|||||+|||+.|++-||+|+||++++..||.++
T Consensus 21 ~ekp~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaGDGT 100 (534)
T KOG0358|consen 21 KEKPEQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAGDGT 100 (534)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccccCCc
Confidence 3455789999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ----------------------------------------------ccCCchhhHHHHHHHHhhhcCCccccchhhHHHH
Q psy17074 413 ----------------------------------------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSK 446 (632)
Q Consensus 413 ----------------------------------------------~~~~~~~~~~~L~~va~t~l~sK~~~~~~~~l~~ 446 (632)
.++.. .+++.|.+.|.|+|+||+.+++...+++
T Consensus 101 TsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~vel-sdre~Li~~atTsLnSKvvSq~s~llap 179 (534)
T KOG0358|consen 101 TSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVEL-SDRESLIKSATTSLNSKVVSQYSSLLAP 179 (534)
T ss_pred eEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCccc-CcHHHHHHHHHhHhhHHHHHhhccccch
Confidence 11222 3678899999999999999999999999
Q ss_pred HHHHHHHHhcc-----cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhhccCC
Q psy17074 447 MVVDAVMSLDD-----LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDN 521 (632)
Q Consensus 447 li~~A~~~v~~-----~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~~~ 521 (632)
++++|++++.+ +.|+.+|+|+|..||.++|+++++|++|++...... -|++++++||.++.|.++++++.+.
T Consensus 180 mAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~~---gptriekAkIglIQF~iS~PKtdme 256 (534)
T KOG0358|consen 180 MAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKSA---GPTRIEKAKIGLIQFQISPPKTDME 256 (534)
T ss_pred HHHHHHHhccCcccccccchhhhhhHHhhCCccchhhhhcceEEeeecccCC---CcchhhhceeeEEEEEecCCCCCcc
Confidence 99999999863 578899999999999999999999999998765432 5889999999999999999999999
Q ss_pred ceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCc-----cHHHHHHHHHCCcEEEecCCchhHHHHHHHcC
Q psy17074 522 AEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVATQYFADRDMFCAGRVPEEDLKRTMKACG 596 (632)
Q Consensus 522 ~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I-----~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tG 596 (632)
.++.++++.+|+.++++|++|+.+++++|++.|++|+++|++| +|.++|||.+.+||+|+.+.++|++.+|+.+|
T Consensus 257 n~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefick~l~ 336 (534)
T KOG0358|consen 257 NQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICKTLG 336 (534)
T ss_pred cceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHhhcC
Confidence 9999999999999999999999999999999999999999987 89999999999999999999999999999999
Q ss_pred CeEeecccCCCCCCCeeeeEEEEE-EEcCeEEEEecC
Q psy17074 597 GAVMTTAHDLNDSVLGTCAVFDER-QIGSERDTLNRE 632 (632)
Q Consensus 597 a~ii~~l~~l~~~~lG~~~~v~~~-~ig~~~~~~~~~ 632 (632)
+.++.++++++++.||+++.+++. .-|+.+++.+.|
T Consensus 337 c~Pia~id~f~~d~Lg~adlveE~~~~G~gkivk~tg 373 (534)
T KOG0358|consen 337 CKPIADIDHFTADKLGSADLVEETDSSGEGKIVKITG 373 (534)
T ss_pred CeecchhhhcChhhcCcchhhhhcccCCCccEEEEEE
Confidence 999999999999999999999987 445557776654
No 19
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8.9e-50 Score=442.05 Aligned_cols=268 Identities=26% Similarity=0.399 Sum_probs=248.6
Q ss_pred cCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc
Q psy17074 333 EGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI 412 (632)
Q Consensus 333 ~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~ 412 (632)
++.+..+|.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++||+++
T Consensus 3 ~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~~ 82 (484)
T cd03342 3 PKAEVLRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDIT 82 (484)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhHh
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------ccCCchhhHHHHHHHHhhhcCCccccchhh
Q psy17074 413 --------------------------------------------------QKSDSGEYRGLLEKCAATALSSKLIHQQKG 442 (632)
Q Consensus 413 --------------------------------------------------~~~~~~~~~~~L~~va~t~l~sK~~~~~~~ 442 (632)
.+++...+.+.|.++|+|+++||+.+.+.+
T Consensus 83 GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~ 162 (484)
T cd03342 83 GDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLAD 162 (484)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHH
Confidence 011110257789999999999999999999
Q ss_pred HHHHHHHHHHHHhcc---cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhhcc
Q psy17074 443 FFSKMVVDAVMSLDD---LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAER 519 (632)
Q Consensus 443 ~l~~li~~A~~~v~~---~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~ 519 (632)
.|++++++|+..++. .+|+++|+|+++.||+..||++++|++|++++.+|+ ||++++||+|++++++|++.+++
T Consensus 163 ~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~---m~~~~~n~~Ill~~~~le~~~~~ 239 (484)
T cd03342 163 QLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPD---MPKRVENAYILTCNVSLEYEKTE 239 (484)
T ss_pred HHHHHHHHHHHHHhhcCCccChhHeEEEEecCCChhhceEEeeEEEecCCCCCC---CCccccCceEEEEeCCCCCCccc
Confidence 999999999999973 578899999999999999999999999999999986 68999999999999999999888
Q ss_pred CCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCCeE
Q psy17074 520 DNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAV 599 (632)
Q Consensus 520 ~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~i 599 (632)
...++.++ ||||+++|++.+++||.++||++|+++++++|+|||++|||++
T Consensus 240 ~~~~~~~~-----------------------------lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tGa~i 290 (484)
T cd03342 240 VNSGFFYS-----------------------------VVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACGGVA 290 (484)
T ss_pred cCcEEEEE-----------------------------EEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCEE
Confidence 77766542 9999999999999999999999999999999999999999999
Q ss_pred eecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 600 MTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 600 i~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
+++++++++++||+|++|+++.+|+++|+||+|
T Consensus 291 i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~ 323 (484)
T cd03342 291 MNSVDDLSPECLGYAGLVYERTLGEEKYTFIEG 323 (484)
T ss_pred ecccccCChhhCcccceEEEEEECCeEEEEEEC
Confidence 999999999999999999999999999999975
No 20
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=5.3e-50 Score=448.73 Aligned_cols=269 Identities=33% Similarity=0.540 Sum_probs=252.8
Q ss_pred hccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHH
Q psy17074 33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKA 112 (632)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~ 112 (632)
++..++++++.+++++++..++++|+++++++++++++.|+||||++++|++.|++||.++||++++++++++|+|||++
T Consensus 240 ~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia~~ 319 (517)
T cd03343 240 VKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLARA 319 (517)
T ss_pred CCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHHHHHH
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeE
Q psy17074 113 CGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAV 192 (632)
Q Consensus 113 tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~v 192 (632)
|||+++++++++++++||+|++|++.++++++|++|++|.++..|||+|||+|+.+++|++|+++|||+++++++++|++
T Consensus 320 tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~v 399 (517)
T cd03343 320 TGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNPKAVTILLRGGTEHVVDELERALEDALRVVADALEDGKV 399 (517)
T ss_pred hCCEEecchhhCChhhCCccceEEEEEECCeEEEEEEcCCCCceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCChhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC--CCccccc
Q psy17074 193 VAGGGAIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD--NAEIRLD 268 (632)
Q Consensus 193 vpGGGa~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~--~~~~G~d 268 (632)
|||||++|++++.+|++++ ..+++ +++++++| ++||+.||++|+ |||+|+.+++.+|+..|. +..+|||
T Consensus 400 vpGGG~~e~~ls~~L~~~~~~~~~~------~~~~~~~~-~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d 472 (517)
T cd03343 400 VAGGGAVEIELAKRLREYARSVGGR------EQLAVEAF-ADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLD 472 (517)
T ss_pred eeCCCHHHHHHHHHHHHHHhcCCCH------HHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeee
Confidence 9999999999999999886 33444 45577888 999999999998 999999999999987664 2347999
Q ss_pred cccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccc
Q psy17074 269 SVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVAT 310 (632)
Q Consensus 269 ~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~ 310 (632)
. .+|.++||.+.|||||+ +++|++|+++|+++||+|++|.
T Consensus 473 ~--~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 515 (517)
T cd03343 473 V--YTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIA 515 (517)
T ss_pred c--CCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhhhHhhh
Confidence 9 99999999999999999 8999999999999999999984
No 21
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=8.2e-50 Score=446.87 Aligned_cols=269 Identities=29% Similarity=0.522 Sum_probs=252.5
Q ss_pred hccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHH
Q psy17074 33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKA 112 (632)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~ 112 (632)
++..++++++.+++++++.+++++|+++++.++++|++.|+|||+++++|++.|++||.++||++++++++++|+|||++
T Consensus 243 ~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~rIa~~ 322 (519)
T TIGR02339 243 VEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEKLARA 322 (519)
T ss_pred ccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHH
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeE
Q psy17074 113 CGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAV 192 (632)
Q Consensus 113 tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~v 192 (632)
|||++++++++++++.||+|++|+++++++++|++|++|.++..|||+|||+|+.+++|.+|+++|||+++++++++|++
T Consensus 323 tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~v 402 (519)
T TIGR02339 323 TGAKIVSSIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNPKAVTILLRGGTEHVVDELERSIQDALHVVASALEDGKV 402 (519)
T ss_pred hCCEEeCchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred EecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC--CCccccc
Q psy17074 193 VAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD--NAEIRLD 268 (632)
Q Consensus 193 vpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~--~~~~G~d 268 (632)
|||||++||++|.+|++++. .+++ +++++++| ++||+.||++|+ |||+|+.+++.+|+..|. +..+|||
T Consensus 403 vpGGGa~e~~ls~~l~~~~~~~~~~------~~~~~~~~-a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid 475 (519)
T TIGR02339 403 VAGGGAVEIELALRLRSYARKIGGR------EQLAIEAF-ADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGIN 475 (519)
T ss_pred eeCCCHHHHHHHHHHHHHhhcCCCH------HHHHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEE
Confidence 99999999999999998863 3444 45677888 999999999998 999999999999987664 2348999
Q ss_pred cccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccc
Q psy17074 269 SVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVAT 310 (632)
Q Consensus 269 ~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~ 310 (632)
. .+|+++||.+.|||||+ ++++++|+++|+++||+|++|.
T Consensus 476 ~--~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 518 (519)
T TIGR02339 476 V--FTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIA 518 (519)
T ss_pred c--CCCCccchhhccceEcHHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence 9 99999999999999999 8999999999999999999874
No 22
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.3e-49 Score=445.74 Aligned_cols=265 Identities=26% Similarity=0.415 Sum_probs=248.5
Q ss_pred cccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCE
Q psy17074 37 KKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGA 116 (632)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ 116 (632)
+++.++.++++++|+.++++|+++++++++++.+.|+||||++++|++.|++||.++||++++++++.+|+|||++|||+
T Consensus 252 ~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~LerIa~~tGa~ 331 (526)
T cd03339 252 KTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIELIAIATGGR 331 (526)
T ss_pred ccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHHHHHHHHhCCE
Confidence 46678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccCCCCCCCCCcceEEEEEEcc--eEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Q psy17074 117 VMTTAHDLNDSVLGTCAVFDERQIGS--ERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVA 194 (632)
Q Consensus 117 ii~~l~~l~~~~lG~~~~v~~~~i~~--~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvp 194 (632)
+++++++++++.||+|+.|+++.++. ++|++|++|+++++|||+|||+|+.+++|+||+++|||+++++++++|++||
T Consensus 332 ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vvp 411 (526)
T cd03339 332 IVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVY 411 (526)
T ss_pred EecchhhCChhhcccCceEEEEEecCCCcEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEe
Confidence 99999999999999999999999985 6889999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC---CCcccccc
Q psy17074 195 GGGAIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD---NAEIRLDS 269 (632)
Q Consensus 195 GGGa~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~---~~~~G~d~ 269 (632)
|||++||++|.+|++++ ..+++ +++++++| ++||++||++|+ |||+|+.+++.+|+..|. +..+|||.
T Consensus 412 GGGa~e~~ls~~l~~~~~~~~~~------~~~~~~~~-a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~ 484 (526)
T cd03339 412 GGGAAEISCSLAVEKAADKCSGI------EQYAMRAF-ADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDC 484 (526)
T ss_pred CCCHHHHHHHHHHHHHhccCCCH------HHHHHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeec
Confidence 99999999999999986 33444 45577888 999999999998 999999999999987763 22379999
Q ss_pred ccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccc
Q psy17074 270 VEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVAT 310 (632)
Q Consensus 270 ~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~ 310 (632)
.+|.++||.+.|||||+ +++|++|+++|+++||+|++|+
T Consensus 485 --~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii~ 526 (526)
T cd03339 485 --LGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV 526 (526)
T ss_pred --CCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhhceecC
Confidence 99999999999999999 8999999999999999999874
No 23
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.4e-49 Score=445.64 Aligned_cols=269 Identities=27% Similarity=0.490 Sum_probs=252.6
Q ss_pred ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHh
Q psy17074 34 KKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKAC 113 (632)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~t 113 (632)
...+.++++.++++++++.++++|+++++.++++|.+.|++||+++++|++.++++|.++||++++++++++|+|||++|
T Consensus 244 ~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~LerIa~~t 323 (525)
T TIGR02344 244 KKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIARAC 323 (525)
T ss_pred ccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHHHHHHh
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEeccccCCCCCCCCC-cceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeE
Q psy17074 114 GGAVMTTAHDLNDSVLGT-CAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAV 192 (632)
Q Consensus 114 Ga~ii~~l~~l~~~~lG~-~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~v 192 (632)
||++++++++++++++|+ |+.|+++++++++|++|++|.++.+|||+|||+|+.+++|+||+++||+++++++++++++
T Consensus 324 Ga~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~v 403 (525)
T TIGR02344 324 GATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKL 403 (525)
T ss_pred CCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCCCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCChhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCC---Ccccc
Q psy17074 193 VAGGGAIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDN---AEIRL 267 (632)
Q Consensus 193 vpGGGa~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~---~~~G~ 267 (632)
||||||+|++||.+|++++ ...++ +++++++| ++||+.||++|+ |||+|+.+++.+|+..|.+ ..+||
T Consensus 404 vpGGGa~e~~ls~~l~~~~~~~~~~------~~~~~~~~-a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gi 476 (525)
T TIGR02344 404 LPGGGATEMAVSVYLAKKASKLEGV------QQWPYRAV-ADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGI 476 (525)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCH------HHHHHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeE
Confidence 9999999999999999986 33454 45577888 999999999998 9999999999999887742 23799
Q ss_pred ccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074 268 DSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ 311 (632)
Q Consensus 268 d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~ 311 (632)
|. .+|+++||.+.|||||+ ++++++|+++|+++||+|++|..
T Consensus 477 d~--~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 521 (525)
T TIGR02344 477 DG--ETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSG 521 (525)
T ss_pred EC--CCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHhhc
Confidence 99 99999999999999999 88999999999999999999865
No 24
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.5e-49 Score=443.39 Aligned_cols=268 Identities=30% Similarity=0.438 Sum_probs=248.8
Q ss_pred ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHh
Q psy17074 34 KKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKAC 113 (632)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~t 113 (632)
.+.+.++++.++++++++.+.++|++++++++++|++.|+||||++++|++.|++||.++||++++++++++|+|||++|
T Consensus 236 ~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~t 315 (527)
T cd03335 236 TKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKAT 315 (527)
T ss_pred CccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHh
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEeccccCC------CCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHH
Q psy17074 114 GGAVMTTAHDL------NDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTI 187 (632)
Q Consensus 114 Ga~ii~~l~~l------~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~ 187 (632)
||+++++++++ ++.+||+|++|+++++++++|++|++|.++++|||+|||+|+.+++|++|+++||++++++++
T Consensus 316 Ga~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~ 395 (527)
T cd03335 316 GATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRTL 395 (527)
T ss_pred CCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999987655 345899999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeEEecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCC---
Q psy17074 188 RNHAVVAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDN--- 262 (632)
Q Consensus 188 ~~~~vvpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~--- 262 (632)
++|++|||||++|++++.+|++++. .+++ +++++++| ++||+.||++|+ |||+|+.+++.+|++.|..
T Consensus 396 ~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~------~~~~i~~~-a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~ 468 (527)
T cd03335 396 ESNSVVPGGGAVETALSIYLENFATTLGSR------EQLAIAEF-AEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQV 468 (527)
T ss_pred hCCCEeeCCCHHHHHHHHHHHHHHhccCcH------HHHHHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999863 3444 45677888 999999999998 9999999999999876632
Q ss_pred -------CccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccc
Q psy17074 263 -------AEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVAT 310 (632)
Q Consensus 263 -------~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~ 310 (632)
..+|||. .+|+++||.+.|||||+ .++|+.|+++|+++||+|++|.
T Consensus 469 ~~~~~~~~~~Gid~--~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii~ 524 (527)
T cd03335 469 KPDKKHLKWYGLDL--INGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIK 524 (527)
T ss_pred ccccccCceEeEEC--CCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhcceee
Confidence 2379999 99999999999999999 8899999999999999999884
No 25
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.3e-49 Score=442.25 Aligned_cols=270 Identities=22% Similarity=0.389 Sum_probs=252.0
Q ss_pred hccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcC-------Cc---EEEEecCcChhHHHHHHHCCceEEEeCC
Q psy17074 33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASG-------AQ---VVLSKLPIGDVATQYFADRDMFCAGRVP 102 (632)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g-------~~---lvi~~~~I~~~al~~l~~~~I~~~~~v~ 102 (632)
+.+.+.+.++.+++++++..+++.|+++++.++++|++.| ++ ||+|+++|++.+++||.++||+++++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~rv~ 318 (531)
T TIGR02347 239 YEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRRAK 318 (531)
T ss_pred CCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEccCC
Confidence 3345678899999999999999999999999999999977 26 9999999999999999999999999999
Q ss_pred chhHHHHHHHhCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHH
Q psy17074 103 EEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMI 182 (632)
Q Consensus 103 ~~~l~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~ 182 (632)
+++|+|||++|||+++++++++++++||+|++|+++.+++++|++|++|.++++|||+|||+|+.+++|++|+++||+++
T Consensus 319 ~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TI~lrG~t~~~l~E~er~l~DAl~v 398 (531)
T TIGR02347 319 RRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNPKSCTILIKGPNDHTIKQIKDAVRDGLRA 398 (531)
T ss_pred HHHHHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEEecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhcc
Q psy17074 183 VRRTIRNHAVVAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAER 260 (632)
Q Consensus 183 ~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~ 260 (632)
+++++++|++||||||+|+++|.+|++++. .+++ +++++++| ++||+.||++|+ |||+|+.+++.+|+..|
T Consensus 399 ~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~------~~~~i~~f-a~ALe~ip~~La~NaG~d~~~vl~~l~~~~ 471 (531)
T TIGR02347 399 VKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGK------AKLGVEAF-ANALLVIPKTLAENSGLDAQDTLVKLEDEH 471 (531)
T ss_pred HHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCH------HHHHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999863 3444 45677888 999999999998 99999999999998777
Q ss_pred CC--CccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074 261 DN--AEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ 311 (632)
Q Consensus 261 ~~--~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~ 311 (632)
.+ ..+|||. .+|.++||.+.|||||+ +++|++|+++|+++||+|++|..
T Consensus 472 ~~~~~~~Gid~--~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~ 525 (531)
T TIGR02347 472 DEGGEVVGVDL--ETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRA 525 (531)
T ss_pred HccCCceeeec--cCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhC
Confidence 53 2479999 99999999999999999 89999999999999999998854
No 26
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=4.6e-49 Score=441.25 Aligned_cols=265 Identities=25% Similarity=0.384 Sum_probs=250.2
Q ss_pred cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEEe
Q psy17074 39 EEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVM 118 (632)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ii 118 (632)
++++.+++++++..+.++|+++++++++.|++.|+++++++++|++.+++||.++||.+++++++.+++|||++|||+++
T Consensus 255 ~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v~~~~l~rIa~~tGa~ii 334 (533)
T PTZ00212 255 GAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHADFDGMERLAAALGAEIV 334 (533)
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEEe
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCh
Q psy17074 119 TTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGA 198 (632)
Q Consensus 119 ~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa 198 (632)
++++++++++||+|++|++..+++++|++|++|..+++|||+|||+|+.+++|.||+++|||+++++++++|++||||||
T Consensus 335 s~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa 414 (533)
T PTZ00212 335 STFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAKGEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGC 414 (533)
T ss_pred ecCCCCCHHHccCCceEEEEEECCeEEEEEEccCCCCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCC--Cccccccccccc
Q psy17074 199 IEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDN--AEIRLDSVEEYQ 274 (632)
Q Consensus 199 ~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~--~~~G~d~~~~~~ 274 (632)
+|+++|.+|++++. ..++ +++++++| ++||+.||++|+ |||+|+.+++.+|+..|.+ ..+|||. .+|
T Consensus 415 ~e~~ls~~L~~~~~~~~~~------~~~~i~~~-a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~--~~g 485 (533)
T PTZ00212 415 SEMLMANAVEELAKKVEGK------KSLAIEAF-AKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDM--EKG 485 (533)
T ss_pred HHHHHHHHHHHHHhhCCCH------HHHHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceec--cCC
Confidence 99999999999863 3444 45577888 999999999998 9999999999999876642 2379999 999
Q ss_pred hhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074 275 KVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY 312 (632)
Q Consensus 275 ~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~ 312 (632)
.++||.+.|||||+ +++|++|+++|+++||+|++|...
T Consensus 486 ~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~ 526 (533)
T PTZ00212 486 TVGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCA 526 (533)
T ss_pred cccchhhccceecHHHHHHHHHHHHHHHHHHHhhhHhhhcC
Confidence 99999999999999 999999999999999999999764
No 27
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.4e-49 Score=440.90 Aligned_cols=265 Identities=27% Similarity=0.416 Sum_probs=248.4
Q ss_pred cccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCE
Q psy17074 37 KKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGA 116 (632)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ 116 (632)
+++.++.++++++++.+.++|+++++++++++++.|+|||||+++|++.+++||.++||++++++++++|+|||++|||+
T Consensus 256 ~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~l~~Ia~~tGa~ 335 (532)
T TIGR02343 256 KTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHELELIAIATGGR 335 (532)
T ss_pred ccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHHHHHHHHHhCCE
Confidence 46678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccCCCCCCCCCcceEEEEEEcc--eEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Q psy17074 117 VMTTAHDLNDSVLGTCAVFDERQIGS--ERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVA 194 (632)
Q Consensus 117 ii~~l~~l~~~~lG~~~~v~~~~i~~--~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvp 194 (632)
++++++++++++||+|++|+++.+|. ++|++|++|+++.+|||+|||+|+.+++|+||+++||++++++++++|++||
T Consensus 336 ~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~vvp 415 (532)
T TIGR02343 336 IVPRFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRIVY 415 (532)
T ss_pred EecccccCCHhHCcccceEEEEEecCCcceEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEe
Confidence 99999999999999999999999987 4899999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC---CCcccccc
Q psy17074 195 GGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD---NAEIRLDS 269 (632)
Q Consensus 195 GGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~---~~~~G~d~ 269 (632)
|||++|+++|++|++++. ..++ +++++++| ++||+.||++|+ |||+|+.+++.+++..|. +..+|||.
T Consensus 416 GGGa~e~~ls~~l~~~~~~~~~~------~~~~i~~f-a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~ 488 (532)
T TIGR02343 416 GGGAAEISCSLAVSQEADKYSGV------EQYAIRAF-ADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDC 488 (532)
T ss_pred CcCHHHHHHHHHHHHHhccCCcH------HHHHHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeC
Confidence 999999999999998863 3444 45577888 999999999998 999999999999987663 22379999
Q ss_pred ccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccc
Q psy17074 270 VEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVAT 310 (632)
Q Consensus 270 ~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~ 310 (632)
.+|.++||.+.|||||+ .++|++|+++|+++||+|++|.
T Consensus 489 --~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~ 530 (532)
T TIGR02343 489 --LGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKIDDVIS 530 (532)
T ss_pred --CCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhHhhhcc
Confidence 99999999999999999 8999999999999999999985
No 28
>KOG0362|consensus
Probab=100.00 E-value=3.3e-48 Score=402.52 Aligned_cols=299 Identities=26% Similarity=0.420 Sum_probs=272.0
Q ss_pred hhhhcccCccccCCc-hhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHH
Q psy17074 327 QILLLKEGTENSQGK-PQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIA 405 (632)
Q Consensus 327 ~~~~~~~~~~~~~~~-~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a 405 (632)
-.++++.|.+..+|. ++..+|++||+.|++++||+|||+|||||++|+.|+.++|||.+||+++++++||+|||+++++
T Consensus 10 ~~q~~k~g~r~~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPaakllv~a~ 89 (537)
T KOG0362|consen 10 IPQMLKEGARSPSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPAAKLLVEAT 89 (537)
T ss_pred hhhHHhccccCcccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcHHHHHHHHH
Confidence 346889998888775 5889999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhccccc--------------------------ccCC----------------------chhhHHHHHHHHhhhcCCccc
Q psy17074 406 KSQDAEI--------------------------QKSD----------------------SGEYRGLLEKCAATALSSKLI 437 (632)
Q Consensus 406 ~~q~~~~--------------------------~~~~----------------------~~~~~~~L~~va~t~l~sK~~ 437 (632)
++|+.++ .+.. ...+.++..++++++++||..
T Consensus 90 ~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~~~~rs~i~skq~ 169 (537)
T KOG0362|consen 90 QMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKEWALRSVIMSKQY 169 (537)
T ss_pred HHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChHHHHHHHHHHhhc
Confidence 9999887 0000 000111223788899988854
Q ss_pred cchhhHHHHHHHHHHHHhccc--CCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchh
Q psy17074 438 HQQKGFFSKMVVDAVMSLDDL--LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELEL 515 (632)
Q Consensus 438 ~~~~~~l~~li~~A~~~v~~~--~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~ 515 (632)
...+++++++++|+.++... |+.++|+++|+.||++++|+++.||+|.+.+.- .++.-+.+||++++||++.
T Consensus 170 -~~ed~l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~eG-----~v~~ak~arvAvf~cP~d~ 243 (537)
T KOG0362|consen 170 -GNEDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLEDSCVVCGMVFKRDPEG-----EVKSAKDARVAVFACPFDI 243 (537)
T ss_pred -chHHHHHHHHHHHHHhhcccccccccceEEEEEecCCcccceeeEEEEeccccCC-----cccccccceeEEEecCCCc
Confidence 46899999999999999855 899999999999999999999999999998763 3467778999999999999
Q ss_pred hhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHc
Q psy17074 516 KAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKAC 595 (632)
Q Consensus 516 ~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~t 595 (632)
..+++++++.+++++++.+|.+.|+..++..++.|+..|++||++.+.|+++++|||++++|++++..++.||+|||+..
T Consensus 244 ~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk~eLrrlcrtv 323 (537)
T KOG0362|consen 244 AQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSKFDLRRLCRTV 323 (537)
T ss_pred ccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccHhhHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEec
Q psy17074 596 GGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNR 631 (632)
Q Consensus 596 Ga~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~ 631 (632)
||++++++..+.++.+|+|++|+..++|++.++.|+
T Consensus 324 GA~~l~rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~ 359 (537)
T KOG0362|consen 324 GATALPRLFPPAPEELGYCDSVSTQEIGDTLVVVFR 359 (537)
T ss_pred CCccchhccCCCCccccccceeeeeecCCceEEEEe
Confidence 999999999999999999999999999999999996
No 29
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.3e-49 Score=438.96 Aligned_cols=264 Identities=25% Similarity=0.382 Sum_probs=249.9
Q ss_pred cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEEe
Q psy17074 39 EEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVM 118 (632)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ii 118 (632)
++++.+++++++..+.+.|++++++++++|++.|+++++++++|++.+++||.++||++++++++.+|+|||++|||+++
T Consensus 243 ~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~tGa~ii 322 (517)
T cd03336 243 GAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALVTGGEIA 322 (517)
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEe
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCh
Q psy17074 119 TTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGA 198 (632)
Q Consensus 119 ~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa 198 (632)
++++++++++||+|+.|++..+|+++|++|++|+++++|||+|||+|+.+++|.||+++|||+++++++++|++|||||+
T Consensus 323 ~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa 402 (517)
T cd03336 323 STFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGC 402 (517)
T ss_pred cccCCCCcccccccceEEEEEECCeEEEEEEccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCC--Cccccccccccc
Q psy17074 199 IEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDN--AEIRLDSVEEYQ 274 (632)
Q Consensus 199 ~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~--~~~G~d~~~~~~ 274 (632)
+|+++|.+|++++. ..++ +++++++| ++||+.||++|+ |||+|+.+++.+|+..|.+ ..+|||. .+|
T Consensus 403 ~e~~ls~~l~~~~~~~~~~------~~~~i~~~-a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~--~~g 473 (517)
T cd03336 403 SEMLMAKAVEELAKKTPGK------KSLAIEAF-AKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDM--RKG 473 (517)
T ss_pred HHHHHHHHHHHHhhhCCCH------HHHHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeec--CCC
Confidence 99999999999863 3444 45577888 999999999998 9999999999999887642 3379999 999
Q ss_pred hhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074 275 KVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ 311 (632)
Q Consensus 275 ~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~ 311 (632)
.++||.+.|||||+ +++|++|+++|+++||+|++|..
T Consensus 474 ~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 513 (517)
T cd03336 474 TVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKC 513 (517)
T ss_pred CccchhhcCceecHHHHHHHHHHHHHHHHHHHhHhHHhhc
Confidence 99999999999999 89999999999999999999975
No 30
>KOG0363|consensus
Probab=100.00 E-value=6.9e-49 Score=392.66 Aligned_cols=303 Identities=33% Similarity=0.503 Sum_probs=285.8
Q ss_pred chhhhcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcC--CCCeEEccChHHHHhhccccChHhHHHHH
Q psy17074 326 PQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQ--NGKSTISNDGATIMKLLDIVHPAAKTLVD 403 (632)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~--~g~~~ITnDG~tIlk~l~i~hP~akll~~ 403 (632)
.|+.+++++..+++|+++|++.+.|+.+++|+|+|||||+||+||++.. .|.+.+||||+|||+++.+++|+||+|++
T Consensus 2 ~p~~i~~~~~~eErge~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvLv~ 81 (527)
T KOG0363|consen 2 NPVQIFKDGATEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVLVD 81 (527)
T ss_pred ChhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCchhhheec
Confidence 4678999999999999999999999999999999999999999999974 57899999999999999999999999999
Q ss_pred HHHhccccc----------------------------------------------------ccCCchhhHHHHHHHHhhh
Q psy17074 404 IAKSQDAEI----------------------------------------------------QKSDSGEYRGLLEKCAATA 431 (632)
Q Consensus 404 ~a~~q~~~~----------------------------------------------------~~~~~~~~~~~L~~va~t~ 431 (632)
.++.||+++ +..+....+++|.++|+|.
T Consensus 82 ~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTT 161 (527)
T KOG0363|consen 82 ISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTT 161 (527)
T ss_pred cccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHH
Confidence 999999999 0112233588999999999
Q ss_pred cCCccccchhhHHHHHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecc
Q psy17074 432 LSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511 (632)
Q Consensus 432 l~sK~~~~~~~~l~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~ 511 (632)
|+||+++++.++|++|+++|+.++.++-|++.|.|+|..||++.||++-+|+++++.+-. .+|++++||+||+-+.
T Consensus 162 L~SKiLsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv----~qpkriena~iLIANT 237 (527)
T KOG0363|consen 162 LSSKILSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIGV----NQPKRIENAKILIANT 237 (527)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCccccccccccceeccccCC----CCcccccccceEEecC
Confidence 999999999999999999999999988899999999999999999999999999998764 3799999999999999
Q ss_pred cchhhhcc-CCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHH
Q psy17074 512 ELELKAER-DNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKR 590 (632)
Q Consensus 512 ~Le~~~~~-~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~r 590 (632)
+++..+.+ +.+.|.+++...+..+...|++.|+..+++|.+.|+|++|..+-|.++..++|...||+++.....+-+||
T Consensus 238 ~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiER 317 (527)
T KOG0363|consen 238 PMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIER 317 (527)
T ss_pred CCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhHHH
Confidence 99997766 57999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 591 TMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 591 Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
|+.+||+.++++|++++...||+|+.+++.-||+++++.|+|
T Consensus 318 LalvtGGeI~STFd~p~~~klG~C~~IeeimiGed~li~FSG 359 (527)
T KOG0363|consen 318 LALVTGGEIVSTFDNPELVKLGECDLIEEIMIGEDKLIKFSG 359 (527)
T ss_pred HhhcccceeeeccCCcchhccccchhhHHHhcCccceeeecc
Confidence 999999999999999999999999999999999999999987
No 31
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.7e-48 Score=436.13 Aligned_cols=265 Identities=23% Similarity=0.397 Sum_probs=248.0
Q ss_pred cccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCc-----ChhHHHHHHHCCceEEEeCCchhHHHHHH
Q psy17074 37 KKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVATQYFADRDMFCAGRVPEEDLKRTMK 111 (632)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I-----~~~al~~l~~~~I~~~~~v~~~~l~~ia~ 111 (632)
+.+.++.++++++++.++++|+++++++++++++.|+||||++++| ++.+++||.++||.+++++++++|+|||+
T Consensus 237 ~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~ 316 (515)
T cd03338 237 DMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICK 316 (515)
T ss_pred ccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHHH
Confidence 3456788899999999999999999999999999999999999998 89999999999999999999999999999
Q ss_pred HhCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCC-CceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCC
Q psy17074 112 ACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKN-ARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNH 190 (632)
Q Consensus 112 ~tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~-~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~ 190 (632)
+|||+++++++++++++||+|+.|++.+++++++++|++|.+ +++|||+|||+|+.+++|+||+++||++++++++++|
T Consensus 317 ~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~ 396 (515)
T cd03338 317 TIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKR 396 (515)
T ss_pred HHCCEEecccccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999987 6999999999999999999999999999999999999
Q ss_pred eEEecCChhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC--CCccc
Q psy17074 191 AVVAGGGAIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD--NAEIR 266 (632)
Q Consensus 191 ~vvpGGGa~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~--~~~~G 266 (632)
++|||||++|++++.+|++++ ..+++ +++++++| ++||+.||++|+ |||+|+.+++.+|+..|. +..+|
T Consensus 397 ~vvpGGG~~e~~ls~~l~~~~~~~~~~------~~~~~~~~-a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G 469 (515)
T cd03338 397 ALIPGGGAPEIEIALQLSEWARTLTGV------EQYCVRAF-ADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAG 469 (515)
T ss_pred CEEECCCHHHHHHHHHHHHHhccCCcH------HHHHHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccc
Confidence 999999999999999999986 33444 45577887 999999999998 999999999999988764 33479
Q ss_pred cccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccc
Q psy17074 267 LDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVAT 310 (632)
Q Consensus 267 ~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~ 310 (632)
||+ .+|.++||.+.|||||+ ++++++|+++|+++||+|++|.
T Consensus 470 ~d~--~~g~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii~ 514 (515)
T cd03338 470 INV--RKGAITNILEENVVQPLLVSTSAITLATETVRMILKIDDIVL 514 (515)
T ss_pred eec--cCCCccchhhcCceecHHHHHHHHHHHHHHHHHHhccchhhc
Confidence 999 99999999999999999 8999999999999999999875
No 32
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.9e-48 Score=435.01 Aligned_cols=266 Identities=21% Similarity=0.365 Sum_probs=248.9
Q ss_pred ccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCc-----ChhHHHHHHHCCceEEEeCCchhHHHHH
Q psy17074 36 KKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVATQYFADRDMFCAGRVPEEDLKRTM 110 (632)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I-----~~~al~~l~~~~I~~~~~v~~~~l~~ia 110 (632)
.+.+.++.++++++++.++++|+++++++++++.+.|+|||+|+++| ++.+++||.++||.+++++++++|+|||
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa 316 (517)
T TIGR02342 237 TDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFIC 316 (517)
T ss_pred ccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHH
Confidence 44577899999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHhCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCC-CceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhC
Q psy17074 111 KACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKN-ARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRN 189 (632)
Q Consensus 111 ~~tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~-~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~ 189 (632)
++|||+++++++++++.+||+|+.|++.+++++.++++.+|++ +++|||+|||+|+.+++|++|+++||++++++++++
T Consensus 317 ~~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~ 396 (517)
T TIGR02342 317 KTIGCKPIASIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKK 396 (517)
T ss_pred HHHCCEEEcchhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999987 489999999999999999999999999999999999
Q ss_pred CeEEecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC--CCcc
Q psy17074 190 HAVVAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD--NAEI 265 (632)
Q Consensus 190 ~~vvpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~--~~~~ 265 (632)
+++|||||++||++|.+|++++. .++. +++++++| ++||+.||++|+ |||+|+.+++.+|+..|. +..+
T Consensus 397 ~~~VpGGGa~e~~ls~~l~~~~~~~~~~------~~~~i~~~-a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~ 469 (517)
T TIGR02342 397 RGLIPGGGAPEIEIAIKLSKLARTMKGV------ESYCVRAF-ADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYA 469 (517)
T ss_pred CCEEECcCHHHHHHHHHHHHHHhcCCcH------HHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999999999863 3444 45677888 999999999998 999999999999988764 2237
Q ss_pred ccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccc
Q psy17074 266 RLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVAT 310 (632)
Q Consensus 266 G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~ 310 (632)
|||. .+|.++||.+.|||||+ ++++++|+++|+++||+|++|.
T Consensus 470 Gid~--~~g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~ 515 (517)
T TIGR02342 470 GISV--RKGGITDMLEEEVLQPLLVTTSAVTLASETVRMILKIDDIVF 515 (517)
T ss_pred ceec--CCCCccchhhccceEcHHHHHHHHHHHHHHHHHHhcccceee
Confidence 9999 99999999999999999 8999999999999999999885
No 33
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.9e-48 Score=436.09 Aligned_cols=269 Identities=51% Similarity=0.837 Sum_probs=252.0
Q ss_pred ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHh
Q psy17074 34 KKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKAC 113 (632)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~t 113 (632)
...+++.++.++++++++.+.+.|++++.++++++++.|++||+++++|+|.+++||.++||++++++++++|+|||++|
T Consensus 243 ~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~t 322 (522)
T cd03340 243 KAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVAQAT 322 (522)
T ss_pred CccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHH
Confidence 34446678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEE
Q psy17074 114 GGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVV 193 (632)
Q Consensus 114 Ga~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vv 193 (632)
||++++++++++++.||+|++|+++++|+++|++|++|..+++|||+|||+|+.+++|.||+++||++++++++++|++|
T Consensus 323 Ga~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vv 402 (522)
T cd03340 323 GGSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVV 402 (522)
T ss_pred CCEEeeccccCCccccccceEEEEEEECCEEEEEEECCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCC---Cccccc
Q psy17074 194 AGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDN---AEIRLD 268 (632)
Q Consensus 194 pGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~---~~~G~d 268 (632)
||||++|++++.+|++++. .+++ +++++++| ++||+.||++|+ |||+|+.+++.+|++.|.+ ..+|||
T Consensus 403 pGGG~~E~~ls~~l~~~~~~~~~~------~~~~~~~f-a~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid 475 (522)
T cd03340 403 AGGGAIEMELSKYLRDYSRTIAGK------QQLVINAF-AKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVD 475 (522)
T ss_pred ECcCHHHHHHHHHHHHHhccCCCH------HHHHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeee
Confidence 9999999999999999863 3444 45577888 999999999998 9999999999999987743 237999
Q ss_pred cccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074 269 SVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ 311 (632)
Q Consensus 269 ~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~ 311 (632)
. .+|.++||.+.|||||+ ++++++|+++|+++||+|++|..
T Consensus 476 ~--~~g~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~id~ii~~ 519 (522)
T cd03340 476 I--NNEGIADNFEAFVWEPSLVKINALTAATEAACLILSVDETIKN 519 (522)
T ss_pred C--CCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHhhhhhheeC
Confidence 9 99999999999999999 89999999999999999999854
No 34
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.6e-48 Score=429.75 Aligned_cols=264 Identities=25% Similarity=0.377 Sum_probs=249.2
Q ss_pred cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEEe
Q psy17074 39 EEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVM 118 (632)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ii 118 (632)
++++.+++++++..+.+.|++++.++++.|++.|++++++++.|++.+++||.++||++++++++.+|+|||++|||+++
T Consensus 244 ~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~~tGa~ii 323 (519)
T TIGR02341 244 GSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLALVTGGEIV 323 (519)
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEe
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCh
Q psy17074 119 TTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGA 198 (632)
Q Consensus 119 ~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa 198 (632)
++++++++++||+|+.|++..+|+++|++|++|+++++|||+|||+|+.+++|.||+++|||++++++++++++||||||
T Consensus 324 ~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa 403 (519)
T TIGR02341 324 STFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKLGEACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGGGC 403 (519)
T ss_pred cccccCCccccccCceEEEEEECCEEEEEEEcCCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCCC--ccccccccccc
Q psy17074 199 IEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDNA--EIRLDSVEEYQ 274 (632)
Q Consensus 199 ~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~~--~~G~d~~~~~~ 274 (632)
+|++++.+|++++. .+++ +++++++| ++||+.||++|+ |||+|+.+++.+|+..|.+. .+|||. .+|
T Consensus 404 ~e~~ls~~l~~~~~~~~~~------~~~~i~~~-a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~--~~g 474 (519)
T TIGR02341 404 SEMLMSKAVAVEAQKVPGK------EALAVEAF-ARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDM--EEG 474 (519)
T ss_pred HHHHHHHHHHHHhhcCCCh------HHHHHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceec--CCC
Confidence 99999999998863 3444 45577888 999999999998 99999999999998876432 379999 999
Q ss_pred hhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074 275 KVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ 311 (632)
Q Consensus 275 ~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~ 311 (632)
+++||.+.|||||+ ++++++|+++|+++|++|++|..
T Consensus 475 ~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 514 (519)
T TIGR02341 475 EIADMRKLGIIESYKVKRAVVSSAAEAAEVILRVDNIIKA 514 (519)
T ss_pred cccchhhccceEcHHHHHHHHHHHHHHHHHHHhHHHHHhc
Confidence 99999999999999 89999999999999999999865
No 35
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-47 Score=430.86 Aligned_cols=269 Identities=29% Similarity=0.430 Sum_probs=248.3
Q ss_pred ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHh
Q psy17074 34 KKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKAC 113 (632)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~t 113 (632)
.....+.++.++++.+++.+.++|++++.+.+++|++.|++||+++++|++.+++||.++||++++++++++|+|||++|
T Consensus 240 ~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~t 319 (536)
T TIGR02340 240 QKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKAT 319 (536)
T ss_pred CcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHHh
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEeccccCC------CCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHH
Q psy17074 114 GGAVMTTAHDL------NDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTI 187 (632)
Q Consensus 114 Ga~ii~~l~~l------~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~ 187 (632)
||++++++.++ ++.+||+|++|+++++++++|++|++|.++.+|||+|||+|+.+++|++|+++|||+++++++
T Consensus 320 Ga~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~ 399 (536)
T TIGR02340 320 GGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGRKSASIILRGANDFMLDEMERSLHDALCVVKRTL 399 (536)
T ss_pred CCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999987544 455699999999999999999999999988999999999999999999999999999999999
Q ss_pred hCCeEEecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCC---
Q psy17074 188 RNHAVVAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDN--- 262 (632)
Q Consensus 188 ~~~~vvpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~--- 262 (632)
++|++|||||++|++++.+|++++. .+++ +++++++| ++||+.||++|+ |||+|+.+++.+|++.|.+
T Consensus 400 ~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~------~~~~~~~f-a~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~ 472 (536)
T TIGR02340 400 ESNSVVPGGGAVETALSIYLENFATTLGSR------EQLAIAEF-AEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQL 472 (536)
T ss_pred cCCCEEECCCHHHHHHHHHHHHHhhhCCCh------hHHHHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCc
Confidence 9999999999999999999998863 3344 45677888 999999999998 9999999999999876642
Q ss_pred -------CccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074 263 -------AEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ 311 (632)
Q Consensus 263 -------~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~ 311 (632)
..+|||+ .+|.++||.+.|||||+ .++|+.|+++|+++|++|++|..
T Consensus 473 ~~~~~~~~~~Gid~--~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~ 529 (536)
T TIGR02340 473 KPEKKHLKWYGLDL--SNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKL 529 (536)
T ss_pred ccccccCceEeEEc--cCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 2379999 99999999999999999 88999999999999999999855
No 36
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=9.6e-48 Score=430.06 Aligned_cols=269 Identities=20% Similarity=0.341 Sum_probs=250.5
Q ss_pred cccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhC
Q psy17074 35 KKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACG 114 (632)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tG 114 (632)
+.+++.++.++++.++..+.+.|+++++++++++++.|+||||++++|++.+++||.++||.++++++..+|+|||.+||
T Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~Ia~~tG 321 (531)
T TIGR02346 242 TTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRLCKTVG 321 (531)
T ss_pred cccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHHHHHHC
Confidence 44557889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccC-CCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEE
Q psy17074 115 GAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK-NARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVV 193 (632)
Q Consensus 115 a~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~-~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vv 193 (632)
|+++++++++++++||+|++|++..+++++|.+|.+|. .+++|||+|||+|+.+++|+||+++|||+++++++++|++|
T Consensus 322 a~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vV 401 (531)
T TIGR02346 322 ATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFL 401 (531)
T ss_pred CEEecccccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999999999999999999999887 58999999999999999999999999999999999999999
Q ss_pred ecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC--CCcccccc
Q psy17074 194 AGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD--NAEIRLDS 269 (632)
Q Consensus 194 pGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~--~~~~G~d~ 269 (632)
||||++||++|.+|++++. .+++ +++++++| ++||+.||++|+ |||+|+.+++.+|+..|. +..+|||.
T Consensus 402 pGGG~~e~~ls~~L~~~~~~~~~~------~~~~~~~~-a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~ 474 (531)
T TIGR02346 402 PGAGATEIELALRLKKYANKLPGL------DQYAIKKF-AEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDI 474 (531)
T ss_pred ECcCHHHHHHHHHHHHHhccCCCH------HHHHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceee
Confidence 9999999999999999863 3444 45567887 999999999998 999999999999987763 33479999
Q ss_pred ccccch--hHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074 270 VEEYQK--VVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY 312 (632)
Q Consensus 270 ~~~~~~--~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~ 312 (632)
.+|. ++||.+.|||||+ +++|++|+++|+++||+|++|...
T Consensus 475 --~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 520 (531)
T TIGR02346 475 --EAESDGVKDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMAK 520 (531)
T ss_pred --eCCCccccChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhccC
Confidence 9999 5999999999999 899999999999999999999754
No 37
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-47 Score=418.52 Aligned_cols=295 Identities=35% Similarity=0.481 Sum_probs=271.0
Q ss_pred CccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc-
Q psy17074 334 GTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI- 412 (632)
Q Consensus 334 ~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~- 412 (632)
+..+.+|.++|..|+.|++.|+++|||||||+||||||+++.|+|+|||||+|||++|+++||.|+|++++|++||+++
T Consensus 3 ~~~~~~~~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~G 82 (524)
T COG0459 3 GKERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAG 82 (524)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHhc
Confidence 4567789999999999999999999999999999999999977999999999999999999999999999999999999
Q ss_pred -------------------------ccCCc----------------------hhhHHHHHHHHhhhcCCccccchhhHHH
Q psy17074 413 -------------------------QKSDS----------------------GEYRGLLEKCAATALSSKLIHQQKGFFS 445 (632)
Q Consensus 413 -------------------------~~~~~----------------------~~~~~~L~~va~t~l~sK~~~~~~~~l~ 445 (632)
+|... ..+.... +++.|+++||...++ ++|+
T Consensus 83 DGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~-~~~~t~v~sk~~~~~-~~i~ 160 (524)
T COG0459 83 DGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEEL-KIAITSVASKSANSD-EEIG 160 (524)
T ss_pred CchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhh-hhhhheeeeeeccCh-HHHH
Confidence 11100 0011111 678899999987666 9999
Q ss_pred HHHHHHHHHhcc-cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCc-eeecCceEEEecccchhhhccCCce
Q psy17074 446 KMVVDAVMSLDD-LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQP-KTYKNPKIALLNIELELKAERDNAE 523 (632)
Q Consensus 446 ~li~~A~~~v~~-~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~-~~~~n~kIll~~~~Le~~~~~~~~~ 523 (632)
+++++|+.+|++ +.|++.|.+++..||+..+|++++||+||++|.+|+| || +.++||+|++++++|++.+++.+..
T Consensus 161 ~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~--~~~~~~e~~~Ili~d~~l~~~k~~l~~e 238 (524)
T COG0459 161 ELVVEAVEKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYF--MPDKRLENPKILLLDKKLEIKKPELPLE 238 (524)
T ss_pred HHHHHHHHHhcccccccCCeEEEEecCCCccceEEEeeEEecCCccCCCC--CCccccccceEEEEccccccccccCcce
Confidence 999999999984 2377999999999999999999999999999998886 89 8999999999999999999999999
Q ss_pred EEecCHHHHHHHHHHHH-HHHHHHHHHHHhcCCc-EEEEeCCccHHHHHHHHHCCcEEEecCCchhH-HHHHHHcCCeEe
Q psy17074 524 IRLDSVEEYQKVVDAEW-KILYEKLDKIHASGAQ-VVLSKLPIGDVATQYFADRDMFCAGRVPEEDL-KRTMKACGGAVM 600 (632)
Q Consensus 524 v~i~~~~~l~~~~~~E~-~~l~~~v~~i~~~gv~-vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L-~rIa~~tGa~ii 600 (632)
+.++++++|..|.++|+ +.+..+++++.+.|.+ +++++++|+|.+++||.+.+|++++++.++++ ++|++++||+++
T Consensus 239 ~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ga~~v 318 (524)
T COG0459 239 IVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLGGAKIV 318 (524)
T ss_pred eEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHccCceEE
Confidence 99999999999999999 9999999999999999 99999999999999999999999999999999 899999999999
Q ss_pred ecccCCCCCCCee--eeEEEEEEEcCeEEEEecC
Q psy17074 601 TTAHDLNDSVLGT--CAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 601 ~~l~~l~~~~lG~--~~~v~~~~ig~~~~~~~~~ 632 (632)
+.++++++..+|. |+.|++..+|++.+++|++
T Consensus 319 ~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~ 352 (524)
T COG0459 319 SVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQE 352 (524)
T ss_pred eecccCceeecCccccceEEEeeccchhhhhhhh
Confidence 9999999999999 9999999999999998874
No 38
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.9e-47 Score=420.11 Aligned_cols=258 Identities=29% Similarity=0.562 Sum_probs=237.9
Q ss_pred hcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhcc
Q psy17074 330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQD 409 (632)
Q Consensus 330 ~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~ 409 (632)
+++++.+.+.|.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~ 83 (480)
T cd03337 4 VLNQNTKRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQD 83 (480)
T ss_pred eccCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhHH
Confidence 45677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc--------------------------------------------------ccCCchhhHHHHHHHHhhhcCCccccc
Q psy17074 410 AEI--------------------------------------------------QKSDSGEYRGLLEKCAATALSSKLIHQ 439 (632)
Q Consensus 410 ~~~--------------------------------------------------~~~~~~~~~~~L~~va~t~l~sK~~~~ 439 (632)
+++ .+.+. .+.+.|.++++|+++||+.+.
T Consensus 84 ~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~-~~~~~l~~i~~t~l~sK~~~~ 162 (480)
T cd03337 84 EEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDV-NDRAQMLKIIKSCIGTKFVSR 162 (480)
T ss_pred HHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccc-CCHHHHHHHHHHHhccCcchh
Confidence 999 01111 256779999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcc-------cCCCC-cEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecc
Q psy17074 440 QKGFFSKMVVDAVMSLDD-------LLPLN-MIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511 (632)
Q Consensus 440 ~~~~l~~li~~A~~~v~~-------~~~~~-~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~ 511 (632)
|.+.|++++++|+..++. ++|++ +|+|++++||+..||++++|++|++++.|+ +||++++||+|++++|
T Consensus 163 ~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~---~m~~~~~n~kIlll~~ 239 (480)
T cd03337 163 WSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHP---KMRRRIENPRIVLLDC 239 (480)
T ss_pred HHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCC---CCCcEecCCCEEEEec
Confidence 999999999999999963 24443 599999999999999999999999999987 4899999999999999
Q ss_pred cchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHH
Q psy17074 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRT 591 (632)
Q Consensus 512 ~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rI 591 (632)
+|++ ||||+++|++.+++||.++||++++++++++|+||
T Consensus 240 ~Le~-----------------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~rI 278 (480)
T cd03337 240 PLEY-----------------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKTDNNRI 278 (480)
T ss_pred Ccce-----------------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHHHH
Confidence 9875 99999999999999999999999999999999999
Q ss_pred HHHcCCeEeecccCCCCCCCee-eeEEEEEEEcCeEEEEecC
Q psy17074 592 MKACGGAVMTTAHDLNDSVLGT-CAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 592 a~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~ 632 (632)
|++|||+++++++++++++||+ |+.++++++|+++|+||+|
T Consensus 279 a~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~ 320 (480)
T cd03337 279 ARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITE 320 (480)
T ss_pred HHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEc
Confidence 9999999999999999999999 7888889999999999975
No 39
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.5e-47 Score=426.58 Aligned_cols=268 Identities=49% Similarity=0.805 Sum_probs=251.0
Q ss_pred cccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhC
Q psy17074 35 KKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACG 114 (632)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tG 114 (632)
..+.+..+.++++++++.+.+.|++++.++++++++.|++||+|+++|++.+++||.++||+++++++..+++++|++||
T Consensus 245 ~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ria~~tg 324 (522)
T TIGR02345 245 AEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRVVKACG 324 (522)
T ss_pred ccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhC
Confidence 33456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Q psy17074 115 GAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVA 194 (632)
Q Consensus 115 a~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvp 194 (632)
|+++++++++++++||+|+.|+++++++++|++|+||+++++|||+|||+|+.+++|.+|+++|||++++++++++++||
T Consensus 325 a~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvp 404 (522)
T TIGR02345 325 GSIQSTTSDLEADVLGTCALFEERQIGSERYNYFTGCPHAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVA 404 (522)
T ss_pred CeEEcchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEe
Confidence 99999999999999999999999999999999999999899999999999999999999999999999999999988999
Q ss_pred cCChhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCC--Cccccccc
Q psy17074 195 GGGAIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDN--AEIRLDSV 270 (632)
Q Consensus 195 GGGa~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~--~~~G~d~~ 270 (632)
|||++|++++.+|++++ ..+++ +++++++| ++||+.||++|+ |||+|+.+++.+|+..|.. ..+|||.
T Consensus 405 GGG~~e~~ls~~l~~~~~~~~~~------~~~~i~~~-a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~- 476 (522)
T TIGR02345 405 GGGAIEMELSKILREHSKKIDGK------QQLIIEAF-AKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDI- 476 (522)
T ss_pred CCCHHHHHHHHHHHHHHhhCCCH------HHHHHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeC-
Confidence 99999999999999886 33444 45577887 999999999998 9999999999999886642 2379999
Q ss_pred cccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074 271 EEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ 311 (632)
Q Consensus 271 ~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~ 311 (632)
.+|+|.||.+.|||||+ +++|++|+++|+++||+|++|..
T Consensus 477 -~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 519 (522)
T TIGR02345 477 -NTEDIGDNFENFVWEPLLVKKNALKAAFEAACTILSIDETIMN 519 (522)
T ss_pred -CCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHHhHHHHHhC
Confidence 99999999999999999 89999999999999999999854
No 40
>KOG0360|consensus
Probab=100.00 E-value=4.7e-47 Score=391.27 Aligned_cols=295 Identities=34% Similarity=0.526 Sum_probs=275.2
Q ss_pred CccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc-
Q psy17074 334 GTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI- 412 (632)
Q Consensus 334 ~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~- 412 (632)
++++.+|..+|..|..|+..++++|++||||-|+|||++++.|++.+||||+|||+.+.++||++|+|+++++.|++++
T Consensus 11 ~ge~~sg~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvelaq~qd~evg 90 (545)
T KOG0360|consen 11 KGERLSGERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELAQLQDEEVG 90 (545)
T ss_pred cCCcccchhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchHHHHHHHHHHhcccccc
Confidence 4567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------------c-------------------------cCCchhhHHHHHHHHhhhcCCccccchhh
Q psy17074 413 -------------------------Q-------------------------KSDSGEYRGLLEKCAATALSSKLIHQQKG 442 (632)
Q Consensus 413 -------------------------~-------------------------~~~~~~~~~~L~~va~t~l~sK~~~~~~~ 442 (632)
+ +++ ...++.|.++++|+++||++....+
T Consensus 91 Dgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd-~lg~~~Lin~~ktsmsSK~i~~ds~ 169 (545)
T KOG0360|consen 91 DGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVD-SLGTQILINLAKTSMSSKIIGMDSD 169 (545)
T ss_pred CCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehh-hcchHHHHHHHHhhhcceecccchH
Confidence 0 111 1246789999999999999999999
Q ss_pred HHHHHHHHHHHHhc-------ccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchh
Q psy17074 443 FFSKMVVDAVMSLD-------DLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELEL 515 (632)
Q Consensus 443 ~l~~li~~A~~~v~-------~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~ 515 (632)
+|++++++|++.+. ..++++.++|.|.+|++..||.++.|+.++....+. .||.++.|+||+++|+.|+.
T Consensus 170 ~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq---~m~~~i~~~Kiacld~~Lqk 246 (545)
T KOG0360|consen 170 FFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQ---MMPLRIKNAKIACLDFTLQK 246 (545)
T ss_pred HHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhh---ccccccccceeeeEeccccc
Confidence 99999999999875 246779999999999999999999999999988775 48999999999999999999
Q ss_pred hhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHc
Q psy17074 516 KAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKAC 595 (632)
Q Consensus 516 ~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~t 595 (632)
.+......+.+.+|.+++++.+.|....++.+++|...|+|||+++++|||+++.||..+|+++|+|++++||++|+++|
T Consensus 247 ~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iakat 326 (545)
T KOG0360|consen 247 TKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAKAT 326 (545)
T ss_pred ccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeecccC------CCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 596 GGAVMTTAHD------LNDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 596 Ga~ii~~l~~------l~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
|+++++++.+ +.++.+|+|+.|.+.+||+|.++++.|
T Consensus 327 Gat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg 369 (545)
T KOG0360|consen 327 GATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKG 369 (545)
T ss_pred CCeeeehhhccccccccChhhccchhHHHHHhcccceeEEecc
Confidence 9999999874 457789999999999999999999865
No 41
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.6e-45 Score=404.41 Aligned_cols=250 Identities=27% Similarity=0.444 Sum_probs=229.6
Q ss_pred CCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc------
Q psy17074 339 QGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI------ 412 (632)
Q Consensus 339 ~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~------ 412 (632)
.+.+++..|+.||..|++++++||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++|++++
T Consensus 5 ~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTTt 84 (472)
T cd03341 5 GLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTNL 84 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------c------------------------c-CCchhhHHHHHHHHhhhcCCccccchhhHHHHH
Q psy17074 413 --------------------Q------------------------K-SDSGEYRGLLEKCAATALSSKLIHQQKGFFSKM 447 (632)
Q Consensus 413 --------------------~------------------------~-~~~~~~~~~L~~va~t~l~sK~~~~~~~~l~~l 447 (632)
+ + .+...+.+.|.++++|+++||..+ +.++|+++
T Consensus 85 ~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~-~~~~l~~l 163 (472)
T cd03341 85 VVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYG-NEDFLSPL 163 (472)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccc-hHHHHHHH
Confidence 0 1 111124567899999999999875 78999999
Q ss_pred HHHHHHHhc----ccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhhccCCce
Q psy17074 448 VVDAVMSLD----DLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAE 523 (632)
Q Consensus 448 i~~A~~~v~----~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~~~~~ 523 (632)
+++|+..++ +.+++++|+|++++||+..||++++|++|++.+. .+++.++||+|++++++|++
T Consensus 164 ~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~-----~~~~~~~n~~Ili~~~~Le~-------- 230 (472)
T cd03341 164 VAEACISVLPENIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREPE-----GSVKRVKKAKVAVFSCPFDI-------- 230 (472)
T ss_pred HHHHHHHHhhccCCcCChhHeEEEEecCCCcccceEEeeEEEccccC-----CCceeccCCcEEEEeccccC--------
Confidence 999999986 3578899999999999999999999999987653 24588999999999999985
Q ss_pred EEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCCeEeecc
Q psy17074 524 IRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTA 603 (632)
Q Consensus 524 v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~l 603 (632)
|++|||++++|++.+++||.++||++++++++++|+|||++|||++++++
T Consensus 231 ------------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~~~ 280 (472)
T cd03341 231 ------------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRL 280 (472)
T ss_pred ------------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEeccc
Confidence 89999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 604 HDLNDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 604 ~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
+++++++||+|++|+++++|+++|++|++
T Consensus 281 ~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 309 (472)
T cd03341 281 GAPTPEEIGYCDSVYVEEIGDTKVVVFRQ 309 (472)
T ss_pred ccCCHhHCCCceEEEEEEECCeeEEEEEc
Confidence 99999999999999999999999999974
No 42
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=9.8e-45 Score=401.47 Aligned_cols=251 Identities=44% Similarity=0.638 Sum_probs=235.0
Q ss_pred ccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc----
Q psy17074 337 NSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI---- 412 (632)
Q Consensus 337 ~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~---- 412 (632)
..++.+++..|++||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++||+++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGT 82 (464)
T cd00309 3 REFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGT 82 (464)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCch
Confidence 3467899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----------------------------------------------ccCCchhhHHHHHHHHhhhcCCccccchhhHHHH
Q psy17074 413 ----------------------------------------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSK 446 (632)
Q Consensus 413 ----------------------------------------------~~~~~~~~~~~L~~va~t~l~sK~~~~~~~~l~~ 446 (632)
.+.+ ..+.+.|.++++|+++||+.+.|+++|++
T Consensus 83 tt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~-~~~~~~l~~ia~tsl~sK~~~~~~~~l~~ 161 (464)
T cd00309 83 TTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPID-VEDREELLKVATTSLNSKLVSGGDDFLGE 161 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccC-CCCHHHHHHHhHhcccccccccchHHHHH
Confidence 0111 23567899999999999999999999999
Q ss_pred HHHHHHHHhcc---cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhhccCCce
Q psy17074 447 MVVDAVMSLDD---LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAE 523 (632)
Q Consensus 447 li~~A~~~v~~---~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~~~~~ 523 (632)
++++|+..++. .++.+.|+|++++||++.||++++|++|++++.+++ |++.++||+|++++++|++
T Consensus 162 l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~---m~~~~~n~~Ili~~~~Le~-------- 230 (464)
T cd00309 162 LVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPY---MPKRLENAKILLLDCKLEY-------- 230 (464)
T ss_pred HHHHHHHHhccccCccccceEEEEecCCCCcccceeeeeEEEecCCCCCC---CceeecCceEEEEecCcce--------
Confidence 99999999975 466799999999999999999999999999999986 6899999999999999985
Q ss_pred EEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCCeEeecc
Q psy17074 524 IRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTA 603 (632)
Q Consensus 524 v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~l 603 (632)
||+++++|++.+++||.++||++|+++++++|+|||++|||++++++
T Consensus 231 ---------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~~ 277 (464)
T cd00309 231 ---------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRL 277 (464)
T ss_pred ---------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEeccc
Confidence 99999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 604 HDLNDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 604 ~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
++++++++|+|+.|+++++|+++|++|++
T Consensus 278 ~~~~~~~lG~~~~v~~~~~g~~~~~~~~~ 306 (464)
T cd00309 278 EDLTPEDLGTAGLVEETKIGDEKYTFIEG 306 (464)
T ss_pred ccCCcccCccccEEEEEEEcCeeEEEEEe
Confidence 99999999999999999999999999964
No 43
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.3e-45 Score=406.91 Aligned_cols=229 Identities=23% Similarity=0.437 Sum_probs=215.1
Q ss_pred cEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCC
Q psy17074 74 QVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKN 153 (632)
Q Consensus 74 ~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~ 153 (632)
+||||+++|++.+++||.++||++++++++++|+|||++|||+++++++++++++||+|++|+++.+++++|++|++|.+
T Consensus 247 ~lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~ 326 (484)
T cd03342 247 SVVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKN 326 (484)
T ss_pred EEEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCEEecccccCChhhCcccceEEEEEECCeEEEEEECCCC
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeecc
Q psy17074 154 ARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISP 232 (632)
Q Consensus 154 ~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a 232 (632)
++.|||+|||+|+.+++|+||+++|||+++++++++|++||||||+|++++.+|++++. .+++ +++++++| +
T Consensus 327 ~~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~------~~~~i~~~-a 399 (484)
T cd03342 327 PKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGK------AKLGVQAF-A 399 (484)
T ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCH------HHHHHHHH-H
Confidence 99999999999999999999999999999999999999999999999999999999873 3444 45677888 9
Q ss_pred ccccccccccc-CCCCchhhHHHHHHhccC--CCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccc
Q psy17074 233 DGFEMQPKTYK-NPKIALLNIELELKAERD--NAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIG 306 (632)
Q Consensus 233 ~ALe~ip~~La-NaG~~~~~v~~~l~~~~~--~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~ 306 (632)
+||+.||++|+ |||+|+.+++.+|+..|. +..+|||+ .+|+|+||.+.|||||+ +++|++|+++|+++||+|
T Consensus 400 ~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~--~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID 477 (484)
T cd03342 400 DALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDL--DTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLVD 477 (484)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeC--CCCcccchhhcCcEEcHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999998 999999999999987663 22379999 99999999999999999 899999999999999999
Q ss_pred ccccc
Q psy17074 307 DVATQ 311 (632)
Q Consensus 307 ~ii~~ 311 (632)
++|..
T Consensus 478 ~ii~~ 482 (484)
T cd03342 478 EIIRA 482 (484)
T ss_pred Hhhhc
Confidence 98753
No 44
>KOG0364|consensus
Probab=100.00 E-value=1.1e-45 Score=377.74 Aligned_cols=304 Identities=26% Similarity=0.496 Sum_probs=285.6
Q ss_pred cchhhhcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHH
Q psy17074 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDI 404 (632)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~ 404 (632)
+.|...+..++.+++|..+...|++|+++++|+++|||||+.|.||+.++.|.+..||||..|+++|++.||+|+.++++
T Consensus 2 ~apv~~~~~~~~re~g~kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpaaksmiel 81 (527)
T KOG0364|consen 2 QAPVLVLSKNTKRESGRKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIEL 81 (527)
T ss_pred CCceeecccccCcCccccccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcchhhHhhh
Confidence 45666778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccc--------------------------------------------------ccCCchhhHHHHHHHHhhhcCC
Q psy17074 405 AKSQDAEI--------------------------------------------------QKSDSGEYRGLLEKCAATALSS 434 (632)
Q Consensus 405 a~~q~~~~--------------------------------------------------~~~~~~~~~~~L~~va~t~l~s 434 (632)
+++||+++ .+++. .+...+.++.++++.+
T Consensus 82 ~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~-~~~~km~~vi~~~v~t 160 (527)
T KOG0364|consen 82 SRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDV-KDQAKMLRVINSSVGT 160 (527)
T ss_pred hhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCc-ccHHHHHhhhhhhhhh
Confidence 99999998 11221 2456788899999999
Q ss_pred ccccchhhHHHHHHHHHHHHhcc----cCCC-CcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEe
Q psy17074 435 KLIHQQKGFFSKMVVDAVMSLDD----LLPL-NMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALL 509 (632)
Q Consensus 435 K~~~~~~~~l~~li~~A~~~v~~----~~~~-~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~ 509 (632)
|+.+.|.+.++++..+|+..|+. .+|+ .+.++.|++||.+.+|++++|+.++++..||. |.+.++||+|.|+
T Consensus 161 k~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpk---mrr~IenprivLl 237 (527)
T KOG0364|consen 161 KFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPK---MRRAIENPRIVLL 237 (527)
T ss_pred hhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCcccccccceecceeeccccCcHH---HHHHhhcCcEEEe
Confidence 99999999999999999999983 3776 78999999999999999999999999999994 7899999999999
Q ss_pred cccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHH
Q psy17074 510 NIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK 589 (632)
Q Consensus 510 ~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~ 589 (632)
||+|+|.+.++.+++.+.-.+++..+++-|++|+..+++.|....++||++.++++|.++|||.+.||.++++.++.|..
T Consensus 238 D~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rKtDn~ 317 (527)
T KOG0364|consen 238 DCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRKTDNN 317 (527)
T ss_pred cCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEeecccCCCCCCCee-eeEEEEEEEcCeEEEEecC
Q psy17074 590 RTMKACGGAVMTTAHDLNDSVLGT-CAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 590 rIa~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~ 632 (632)
||+++|||+++++.+|+.+.+.|+ |+.|++.++|+++|+||.+
T Consensus 318 ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~ 361 (527)
T KOG0364|consen 318 RIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTD 361 (527)
T ss_pred hhhhhcCceeccChhhCchhccCcccceeeeeccCchhhhhhhh
Confidence 999999999999999999999996 9999999999999999863
No 45
>KOG0361|consensus
Probab=100.00 E-value=1.6e-45 Score=370.75 Aligned_cols=268 Identities=52% Similarity=0.852 Sum_probs=253.6
Q ss_pred ccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCC
Q psy17074 36 KKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGG 115 (632)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa 115 (632)
|..+..++++++++++.+.+.||+.+.+++++|.++|+|||++.-.|.|.|-+||.+++|.+.+|++.+||.|+..++|+
T Consensus 249 EkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~Rv~~acGG 328 (543)
T KOG0361|consen 249 EKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLNRVMQACGG 328 (543)
T ss_pred cccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHHHHHHHHhcCc
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEec
Q psy17074 116 AVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAG 195 (632)
Q Consensus 116 ~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpG 195 (632)
.+.++..++.+..||.|..|+++++|.++|-+|+||+..+.||++|||+-++.+.|.+|++|||++++|.++++..+|+|
T Consensus 329 si~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~vVaG 408 (543)
T KOG0361|consen 329 SIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVAG 408 (543)
T ss_pred chhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCCCc--ccccccc
Q psy17074 196 GGAIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDNAE--IRLDSVE 271 (632)
Q Consensus 196 GGa~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~~~--~G~d~~~ 271 (632)
||++||++|+.|++|+ ...+++ |+.+.++ ++|||.||++|+ |||+|...++.+|+..|.+.+ +|+|-
T Consensus 409 GGaiEMElSk~lRd~S~ti~gK~------q~~i~A~-akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi-- 479 (543)
T KOG0361|consen 409 GGAIEMELSKYLRDYSRTIAGKQ------QLFINAY-AKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDI-- 479 (543)
T ss_pred CceeeehHHHHHHHhhcccCcHH------HHHHHHH-HHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeee--
Confidence 9999999999999999 445654 4466787 999999999998 999999999999999998665 58998
Q ss_pred ccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074 272 EYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY 312 (632)
Q Consensus 272 ~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~ 312 (632)
.++.+.|+++.+||+|. .+++.+|+++|+++|.+|+-|..-
T Consensus 480 ~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn~ 523 (543)
T KOG0361|consen 480 NTEGIADNFEKFVWEPSIVKINAITAATEAACLILSVDETIKNP 523 (543)
T ss_pred cccchhhHHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcCC
Confidence 88999999999999999 899999999999999999877543
No 46
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=6.2e-44 Score=397.93 Aligned_cols=274 Identities=38% Similarity=0.590 Sum_probs=254.6
Q ss_pred HHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc---------------------
Q psy17074 354 VVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI--------------------- 412 (632)
Q Consensus 354 la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~--------------------- 412 (632)
|+++|++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~l 80 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKL 80 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999998
Q ss_pred -----ccCC---------------------chhhH-HHHHHHHhhhcCCccccchhhHHHHHHHHHHHHhcccCCCCcEE
Q psy17074 413 -----QKSD---------------------SGEYR-GLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIG 465 (632)
Q Consensus 413 -----~~~~---------------------~~~~~-~~L~~va~t~l~sK~~~~~~~~l~~li~~A~~~v~~~~~~~~I~ 465 (632)
+|.. ..... +.|.++++|++++|+...|.++|++++++|+..+..++|+++++
T Consensus 81 i~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~~~i~ 160 (485)
T PF00118_consen 81 IKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDLDNIK 160 (485)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHGGGEE
T ss_pred hhccccccchhhhhhhhhhhhhhhhhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccccchh
Confidence 0000 00111 78999999999999999999999999999996554446778899
Q ss_pred EEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhhccCCceEEecCHHHHHHHHHHHHHHHHH
Q psy17074 466 IKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYE 545 (632)
Q Consensus 466 I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~ 545 (632)
++++.||+.+||++++|++|++++.++ +||++++||+|++++++|++.++ .++++.+++++++..+.++|++++++
T Consensus 161 i~~i~g~~~~dS~li~Giv~~~~~~~~---~~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~e~~~l~~ 236 (485)
T PF00118_consen 161 IIKIPGGSISDSELINGIVLDKGFSSP---NMPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQEKKYLKK 236 (485)
T ss_dssp EEEEESSSSGGEEEESEEEESSSBSST---TSBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHHHHHHHHH
T ss_pred hhhhccccccccccccceeeecccccc---ccccccccceEEeeecccccccc-cccccchhhHHHHHHHHhhhhhhhcc
Confidence 999999999999999999999999987 48999999999999999999988 89999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcCe
Q psy17074 546 KLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSE 625 (632)
Q Consensus 546 ~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~ 625 (632)
+++.+.+.|++|||++++|++.++++|.++||++++++++++|++||++|||++++++++++++++|+|++++++.+|++
T Consensus 237 ~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v~~~~i~~~ 316 (485)
T PF00118_consen 237 ILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKSVEEREIGNK 316 (485)
T ss_dssp HHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEEEEEEETSS
T ss_pred ccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccccchhhhhhhhhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred EEEEec
Q psy17074 626 RDTLNR 631 (632)
Q Consensus 626 ~~~~~~ 631 (632)
+|++|+
T Consensus 317 ~~~~~~ 322 (485)
T PF00118_consen 317 KYIFIE 322 (485)
T ss_dssp EEEEEE
T ss_pred cccccc
Confidence 999997
No 47
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-45 Score=402.70 Aligned_cols=274 Identities=24% Similarity=0.332 Sum_probs=254.8
Q ss_pred hccccccceEEecCHHHHHHHHHHHH-HHHHHHHHHHHHcCCc-EEEEecCcChhHHHHHHHCCceEEEeCCchhH-HHH
Q psy17074 33 KKKKKKEEEEEEEEPDEYQKVVDAEW-KILYEKLDKIHASGAQ-VVLSKLPIGDVATQYFADRDMFCAGRVPEEDL-KRT 109 (632)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~E~-~~i~~~~~~i~~~g~~-lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l-~~i 109 (632)
..++..+..+.++++++|..|.++|+ +.+..++..+++.|+| +++++++|+|.+++||.+.+|++++++.++++ ++|
T Consensus 230 ~~k~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l 309 (524)
T COG0459 230 IKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERL 309 (524)
T ss_pred cccccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHH
Confidence 34455558999999999999999999 9999999999999999 99999999999999999999999999999999 799
Q ss_pred HHHhCCEEeccccCCCCCCCCC--cceEEEEEEcceEEEEEeccCC--CceEEEEecCCChhhHHHHHHHHHHHHHHHHH
Q psy17074 110 MKACGGAVMTTAHDLNDSVLGT--CAVFDERQIGSERFNVFSGCKN--ARTCTIIVRGGAEQFLEETERSLHDAIMIVRR 185 (632)
Q Consensus 110 a~~tGa~ii~~l~~l~~~~lG~--~~~v~~~~i~~~~~~~~~~~~~--~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~ 185 (632)
+.++||++++.++++++..+|. |+.|++..+++..+++|.+|.. +++|||++||+|+.+++|.||+++|||+++|+
T Consensus 310 ~~~~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ 389 (524)
T COG0459 310 AKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRA 389 (524)
T ss_pred HHccCceEEeecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 9999999999999999999986 88999999999999999999999999999999
Q ss_pred HHhCCeEEecCChhHHHHHHHHhhh-ccCCC-ccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCC
Q psy17074 186 TIRNHAVVAGGGAIEMELSKALRDY-SGLGD-KVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDN 262 (632)
Q Consensus 186 a~~~~~vvpGGGa~e~~ls~~L~~~-~~~~~-~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~ 262 (632)
++++|++|||||++|++++.+|+++ ....+ ++ ++++++| ++|||.||++|+ |||+||.+++.+|++.|..
T Consensus 390 ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e------~~~i~~~-a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~~ 462 (524)
T COG0459 390 AVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDE------QLGIEAF-ARALEAPPRQLAENAGLDPIEVLSKLRSAHAT 462 (524)
T ss_pred HHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHH------HHHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHhcccC
Confidence 9999999999999999999999998 33333 54 5567888 999999999998 9999999999999998763
Q ss_pred Cccccccccccchh-HhHHHHhHHHHH---HHHHHhhchhheecccccccccccccc
Q psy17074 263 AEIRLDSVEEYQKV-VDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQYFAD 315 (632)
Q Consensus 263 ~~~G~d~~~~~~~~-~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~~~~ 315 (632)
.++|||+ .+++| .||.+.|||||+ +++|++|+++|+++||+|++|.+.-..
T Consensus 463 ~~~G~d~--~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~d~iI~~~~~~ 517 (524)
T COG0459 463 TNYGIDA--FTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEE 517 (524)
T ss_pred Cccceec--cCCccccchHhccCcChHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Confidence 4489999 99999 779999999999 999999999999999999999987543
No 48
>KOG0358|consensus
Probab=100.00 E-value=1.4e-44 Score=363.49 Aligned_cols=270 Identities=23% Similarity=0.375 Sum_probs=252.5
Q ss_pred hccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCc-----ChhHHHHHHHCCceEEEeCCchhHH
Q psy17074 33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVATQYFADRDMFCAGRVPEEDLK 107 (632)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I-----~~~al~~l~~~~I~~~~~v~~~~l~ 107 (632)
+++.|...++.++|+.+|+++++.|++|++++|++|.+.|+||+++|++| +|.|+|||.+.+|+++.++.++|++
T Consensus 250 ~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRedie 329 (534)
T KOG0358|consen 250 PPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIE 329 (534)
T ss_pred CCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHH
Confidence 67788899999999999999999999999999999999999999999987 8999999999999999999999999
Q ss_pred HHHHHhCCEEeccccCCCCCCCCCcceEEEE-EEcceEEEEEeccCC-CceEEEEecCCChhhHHHHHHHHHHHHHHHHH
Q psy17074 108 RTMKACGGAVMTTAHDLNDSVLGTCAVFDER-QIGSERFNVFSGCKN-ARTCTIIVRGGAEQFLEETERSLHDAIMIVRR 185 (632)
Q Consensus 108 ~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~-~i~~~~~~~~~~~~~-~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~ 185 (632)
.+|+.+|+.+++++++++++.||+++.+++. .-|+.+++.+.|+.+ +..+||++||++..+++|.+|++|||||++|+
T Consensus 330 fick~l~c~Pia~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDALCVirC 409 (534)
T KOG0358|consen 330 FICKTLGCKPIADIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRC 409 (534)
T ss_pred HHHhhcCCeecchhhhcChhhcCcchhhhhcccCCCccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhhHHHHh
Confidence 9999999999999999999999999999776 345668999999887 78999999999999999999999999999999
Q ss_pred HHhCCeEEecCChhHHHHHHHHhhhccCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCCCc
Q psy17074 186 TIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDNAE 264 (632)
Q Consensus 186 a~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~~~ 264 (632)
.++.+.++||||+.|++++..|..++.. .-|+ +.+++++| ++|||.+|+||| |||++|..++.+|+..|.+.+
T Consensus 410 Lvk~r~li~GGGapEieia~~L~~~a~t----~eG~-~~yc~raf-A~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge 483 (534)
T KOG0358|consen 410 LVKKRALIAGGGAPEIEIALRLSALART----LEGV-EAYCWRAF-ADALEVIPYTLAENAGLNPIATVTELRNRHAQGE 483 (534)
T ss_pred hhhccceecCCCCcchHHHHHHHHHHhh----hccc-hhHHHHHH-HHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCC
Confidence 9999999999999999999999999842 2344 67789998 999999999998 999999999999999987664
Q ss_pred --cccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccc
Q psy17074 265 --IRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVAT 310 (632)
Q Consensus 265 --~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~ 310 (632)
.|+|. ..|...||.++.|+-|+ .++++.|.+.+.++|++|+|+.
T Consensus 484 ~~aGInV--Rkg~~tni~ee~VvQPllVs~SaitlA~Etvr~ILKIDDIv~ 532 (534)
T KOG0358|consen 484 KNAGINV--RKGGITNILEENVVQPLLVSISAITLATETVRSILKIDDIVN 532 (534)
T ss_pred cccceee--ecccchhhHHHhcccceeeeHHHHHHHHHHHHHHhhhhhhcc
Confidence 69999 99999999999999999 8899999999999999999874
No 49
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.8e-44 Score=398.84 Aligned_cols=230 Identities=21% Similarity=0.381 Sum_probs=216.0
Q ss_pred CCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEecc
Q psy17074 72 GAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGC 151 (632)
Q Consensus 72 g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~ 151 (632)
|+||||++++|++.+++||.++||.+++++++.+|+|||++|||++++++++++++++|+|++|++.++|+++|++|.+|
T Consensus 231 g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~ 310 (472)
T cd03341 231 GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQN 310 (472)
T ss_pred CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCHhHCCCceEEEEEEECCeeEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceee
Q psy17074 152 KN-ARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHA 229 (632)
Q Consensus 152 ~~-~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~ 229 (632)
.+ +++|||+|||+|+.+++|.||+++|||+++++++++|++|||||++|++++.+|++++. .+++ +++++++
T Consensus 311 ~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~------~~~~~~~ 384 (472)
T cd03341 311 KEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGL------EQYAIKK 384 (472)
T ss_pred CCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCH------HHHHHHH
Confidence 87 89999999999999999999999999999999999999999999999999999999863 3444 4557788
Q ss_pred eccccccccccccc-CCCCchhhHHHHHHhccCC--Cccccccccccc--hhHhHHHHhHHHHH---HHHHHhhchhhee
Q psy17074 230 ISPDGFEMQPKTYK-NPKIALLNIELELKAERDN--AEIRLDSVEEYQ--KVVDAEWKILYEKL---DKIHASGAQVVLS 301 (632)
Q Consensus 230 ~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~--~~~G~d~~~~~~--~~~d~~~~gI~Dp~---~~~l~~a~~va~~ 301 (632)
| ++||+.||++|+ |||+|+.+++.+|+..|.+ ..+|||+ .+| +|+||.+.|||||+ +++|++|+++|++
T Consensus 385 ~-a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~--~~g~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~ 461 (472)
T cd03341 385 F-AEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDI--ESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVT 461 (472)
T ss_pred H-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeec--cCCCCCccChhhccceecHHHHHHHHHHHHHHHHH
Confidence 7 999999999998 9999999999999876632 2479999 999 99999999999999 8999999999999
Q ss_pred ccccccccc
Q psy17074 302 KLPIGDVAT 310 (632)
Q Consensus 302 ~l~~~~ii~ 310 (632)
+||+|++|.
T Consensus 462 iL~id~ii~ 470 (472)
T cd03341 462 VLRVDQIIM 470 (472)
T ss_pred Hhhhcceee
Confidence 999999884
No 50
>KOG0364|consensus
Probab=100.00 E-value=1.7e-44 Score=368.97 Aligned_cols=275 Identities=26% Similarity=0.435 Sum_probs=260.5
Q ss_pred hhccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHH
Q psy17074 32 KKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMK 111 (632)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~ 111 (632)
+|.+...++.+++...+++.+.++-|++++..+++.|+...++||++.++++|.|++||.++||.+++++++.|..|+|+
T Consensus 242 eykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rKtDn~ria~ 321 (527)
T KOG0364|consen 242 EYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRKTDNNRIAR 321 (527)
T ss_pred cCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhccccchhhh
Confidence 57788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCEEeccccCCCCCCCCC-cceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCC
Q psy17074 112 ACGGAVMTTAHDLNDSVLGT-CAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNH 190 (632)
Q Consensus 112 ~tGa~ii~~l~~l~~~~lG~-~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~ 190 (632)
++||+++++.+++.+.+.|+ |+.+++..+|+++|++|..|++|+.|||++||||..+++|.+|.++||+.++|+.+-+|
T Consensus 322 acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pkaCtillrg~skdil~e~ernlqda~~varn~ii~P 401 (527)
T KOG0364|consen 322 ACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPKACTILLRGPSKDILNEVERNLQDAMGVARNVIINP 401 (527)
T ss_pred hcCceeccChhhCchhccCcccceeeeeccCchhhhhhhhcCCCcceEEEeccCchhHHHHHHHHhhhHHHHHHHhccCC
Confidence 99999999999999999995 88999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCChhHHHHHHHHhhhccCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCCCc--ccc
Q psy17074 191 AVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDNAE--IRL 267 (632)
Q Consensus 191 ~vvpGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~~~--~G~ 267 (632)
+++|||||+||++|+.|++.+.. ..|+ ++|+|.++ +.|||.+|++|+ |||.++...+..++..|.+.. +|+
T Consensus 402 klvPGGGAtEMAvs~~L~qksa~----~~GV-ekwPY~Av-a~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi 475 (527)
T KOG0364|consen 402 KLVPGGGATEMAVSHELRQKSAL----MTGV-EKWPYGAV-AGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGI 475 (527)
T ss_pred cccCCccHHHHHHHHHHHHHHhh----ccch-hccchhhh-hcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecc
Confidence 99999999999999999986532 2456 89999998 999999999998 999999999999998887542 799
Q ss_pred ccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccccc
Q psy17074 268 DSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQYFA 314 (632)
Q Consensus 268 d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~~~ 314 (632)
|. ++|..+||.+.|+|+|. .+..++|.++++++||+|.+++....
T Consensus 476 ~g--~tg~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRIddIvsg~kk 523 (527)
T KOG0364|consen 476 DG--ETGVIVDMVELGIWEPEAVKLQTGKTAVESACLLLRIDDIVSGKKK 523 (527)
T ss_pred cC--ceeeEeeeeeccccchhhhhhhhhhHHHHHHHHHHhhhceeeeeee
Confidence 99 99999999999999999 78999999999999999999988744
No 51
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=1e-43 Score=396.17 Aligned_cols=265 Identities=31% Similarity=0.516 Sum_probs=249.4
Q ss_pred ccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEE
Q psy17074 38 KEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAV 117 (632)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~i 117 (632)
.++++.++++++++.+.++|++++.++++++.+.|+|||+++++|++.++++|.++||.+++++++.+|++||++|||++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~i 290 (485)
T PF00118_consen 211 FKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASI 290 (485)
T ss_dssp STEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBE
T ss_pred cccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCCCCCCCCcceEEEEEEcceEEEEEe--ccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEec
Q psy17074 118 MTTAHDLNDSVLGTCAVFDERQIGSERFNVFS--GCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAG 195 (632)
Q Consensus 118 i~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~--~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpG 195 (632)
++++++++++.+|+|+.++++.+++++|++|+ +|..+..+||+|||+|+.+++|.+|+++||++++++++++|++|||
T Consensus 291 i~~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpG 370 (485)
T PF00118_consen 291 ISSLDDLSDEDLGFCKSVEEREIGNKKYIFIEGIGCLSSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPG 370 (485)
T ss_dssp BSSCGGSTGGGSEEEEEEEEEEETSSEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEET
T ss_pred ecccccccchhhhhhhhhhhcccccccccccccccccccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeec
Confidence 99999999988999999999999999999999 6888999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC-CCccccccccc
Q psy17074 196 GGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD-NAEIRLDSVEE 272 (632)
Q Consensus 196 GGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~-~~~~G~d~~~~ 272 (632)
||++|++++.+|++++. .+++ +++++++| ++||+.||++|+ |||+|+.+++++|+..|. +..+|||. .
T Consensus 371 GG~~e~~l~~~L~~~~~~~~~~------~~~~~~~~-a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~~~~g~d~--~ 441 (485)
T PF00118_consen 371 GGATELHLSKALRKYAKSLSGK------EQLAIEAF-ADALESIPKTLAQNAGLDSSEVISKLKSFHNNGNNYGIDL--D 441 (485)
T ss_dssp TTHHHHHHHHHHHHHHHCSSSH------HHHHHHHH-HHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHSTTTEEEET--T
T ss_pred CcchhhhhhhhHHHhhhcccCc------hhhhHHHH-HHHHHHhhhhhhhccCCCceeeehhhHhhhccccccCcCc--c
Confidence 99999999999988874 3344 34577888 999999999998 999999999999988553 23479999 9
Q ss_pred cchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074 273 YQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ 311 (632)
Q Consensus 273 ~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~ 311 (632)
+|++.||.+.|||||+ .++++.|+++|+++|++|++|..
T Consensus 442 ~~~i~~~~~~gi~dp~~~k~~~l~~A~~~a~~iL~id~iI~~ 483 (485)
T PF00118_consen 442 TGEIVDMKEAGILDPLLVKISALKSAVEIASLILRIDEIIMA 483 (485)
T ss_dssp TTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred CCceeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999 89999999999999999999875
No 52
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.3e-41 Score=379.76 Aligned_cols=259 Identities=17% Similarity=0.281 Sum_probs=228.1
Q ss_pred ccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccCh----HhHHHHHHHHhccccc
Q psy17074 337 NSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHP----AAKTLVDIAKSQDAEI 412 (632)
Q Consensus 337 ~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP----~akll~~~a~~q~~~~ 412 (632)
..+|.+++..|+.||..++++|+|||||+||+|||+++.|+++|||||+|||++|+++|| .|+|++++|++||+++
T Consensus 5 ~~~~~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~e~ 84 (542)
T PRK00013 5 IKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVA 84 (542)
T ss_pred hhchHHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCccc
Confidence 457889999999999999999999999999999999999999999999999999999999 6999999999999999
Q ss_pred --------------------------ccCC---------------------chhhHHHHHHHHhhhcCCccccchhhHHH
Q psy17074 413 --------------------------QKSD---------------------SGEYRGLLEKCAATALSSKLIHQQKGFFS 445 (632)
Q Consensus 413 --------------------------~~~~---------------------~~~~~~~L~~va~t~l~sK~~~~~~~~l~ 445 (632)
+|.. ...+.+.|.++|+|+++ +++.|+
T Consensus 85 GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~------~~~~ls 158 (542)
T PRK00013 85 GDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISAN------GDEEIG 158 (542)
T ss_pred CCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccc------chHHHH
Confidence 0100 01145668888888753 678999
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCc----CCceeecCceEEEecccchhhhccCC
Q psy17074 446 KMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAERDN 521 (632)
Q Consensus 446 ~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~~~ 521 (632)
+++++|+..++.+ +.|+|.+..| ...+|++++|++|+++|.+|+|. +|++.++||+|+++|+.+
T Consensus 159 ~lv~~Av~~v~~~---g~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i-------- 226 (542)
T PRK00013 159 KLIAEAMEKVGKE---GVITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKI-------- 226 (542)
T ss_pred HHHHHHHHHhCcC---CcEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCcc--------
Confidence 9999999998743 4588888777 77899999999999999999873 578999999999999964
Q ss_pred ceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCC------cEEEecCC-----chhHHH
Q psy17074 522 AEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRD------MFCAGRVP-----EEDLKR 590 (632)
Q Consensus 522 ~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~------I~~v~~v~-----~~~L~r 590 (632)
++++++. ++++.+++.|++|||++++|++.++++|..++ |++|++++ +++|+|
T Consensus 227 -----~~~~~l~-----------~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ 290 (542)
T PRK00013 227 -----SNIQDLL-----------PVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLED 290 (542)
T ss_pred -----CCHHHHH-----------HHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHH
Confidence 4666654 55999999999999999999999999999996 99999997 889999
Q ss_pred HHHHcCCeEee-----cccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 591 TMKACGGAVMT-----TAHDLNDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 591 Ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
||++|||++++ +++++++++||+|+.|++.. ++|++|+|
T Consensus 291 ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~ 334 (542)
T PRK00013 291 IAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTK---DNTTIVDG 334 (542)
T ss_pred HHHHcCCEEecccccCCcccCCHHHCCeeeEEEEec---CEEEEEeC
Confidence 99999999999 79999999999999999864 88998864
No 53
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3e-43 Score=389.83 Aligned_cols=227 Identities=28% Similarity=0.520 Sum_probs=212.3
Q ss_pred EEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEEeccccCCCCCCCCC-cceEEEEEEcceEEEEEeccCC
Q psy17074 75 VVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGT-CAVFDERQIGSERFNVFSGCKN 153 (632)
Q Consensus 75 lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~i~~~~~~~~~~~~~ 153 (632)
||+++++|++.|++||.++||++++++++++|+|||++|||++++++++++++.||+ |+.++++.+++++|++|++|.+
T Consensus 244 lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~ 323 (480)
T cd03337 244 LVITEKGVSDLAQHYLVKAGITALRRVRKTDNNRIARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECKD 323 (480)
T ss_pred EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCC
Confidence 899999999999999999999999999999999999999999999999999999999 6788888889999999999999
Q ss_pred CceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeecc
Q psy17074 154 ARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISP 232 (632)
Q Consensus 154 ~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a 232 (632)
+++|||+|||+|+.+++|.||+++||+++++++++++++|||||++||++|.+|++++. .+++ +++++++| +
T Consensus 324 ~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~------~~~~~~~~-a 396 (480)
T cd03337 324 PKACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGV------EQWPYKAV-A 396 (480)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCH------HHHHHHHH-H
Confidence 99999999999999999999999999999999999999999999999999999998873 3444 45677888 9
Q ss_pred ccccccccccc-CCCCchhhHHHHHHhccCCC---ccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccc
Q psy17074 233 DGFEMQPKTYK-NPKIALLNIELELKAERDNA---EIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPI 305 (632)
Q Consensus 233 ~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~~---~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~ 305 (632)
+||+.||++|+ |||+|+.+++.+|++.|... .+|+|. .+|.++||.+.|||||+ ++++++|+++|+++||+
T Consensus 397 ~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~--~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~i 474 (480)
T cd03337 397 SALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDG--ETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRI 474 (480)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeec--cCCCcccchhccCeEcHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999998 99999999999998876432 379999 99999999999999999 89999999999999999
Q ss_pred ccccc
Q psy17074 306 GDVAT 310 (632)
Q Consensus 306 ~~ii~ 310 (632)
|++|.
T Consensus 475 d~ii~ 479 (480)
T cd03337 475 DDIVS 479 (480)
T ss_pred hheec
Confidence 99874
No 54
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.4e-41 Score=377.55 Aligned_cols=258 Identities=17% Similarity=0.250 Sum_probs=223.6
Q ss_pred ccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccCh----HhHHHHHHHHhccccc
Q psy17074 337 NSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHP----AAKTLVDIAKSQDAEI 412 (632)
Q Consensus 337 ~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP----~akll~~~a~~q~~~~ 412 (632)
..+|.+++..|+.|+..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++|| +|+|++++|++||+++
T Consensus 5 ~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~ 84 (542)
T PRK12849 5 IKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDVA 84 (542)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCCcc
Confidence 346789999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred --------------------------ccCC---------------------chhhHHHHHHHHhhhcCCccccchhhHHH
Q psy17074 413 --------------------------QKSD---------------------SGEYRGLLEKCAATALSSKLIHQQKGFFS 445 (632)
Q Consensus 413 --------------------------~~~~---------------------~~~~~~~L~~va~t~l~sK~~~~~~~~l~ 445 (632)
+|.. ...+.+.|.++|+|+.+ ++++|+
T Consensus 85 GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~------~~~~l~ 158 (542)
T PRK12849 85 GDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISAN------GDEEIG 158 (542)
T ss_pred CCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcC------ChHHHH
Confidence 1100 01145568888888743 679999
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEecCCCccc-ceeEEeEEEecccCCCCCc----CCceeecCceEEEecccchhhhccC
Q psy17074 446 KMVVDAVMSLDDLLPLNMIGIKKVAGGALED-SLLVDGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAERD 520 (632)
Q Consensus 446 ~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~d-S~li~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~~ 520 (632)
+++++|+..++.+ +.+.+. .|++.+| +++++|++|+++|.+|+|. +|++.++||+|+++|+.+
T Consensus 159 ~lv~~Av~~v~~~---g~i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i------- 226 (542)
T PRK12849 159 ELIAEAMEKVGKD---GVITVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKI------- 226 (542)
T ss_pred HHHHHHHHHhccC---CcEeEE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCc-------
Confidence 9999999998743 344454 6888876 7999999999999999874 588999999999999964
Q ss_pred CceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHC------CcEEEecCCc-----hhHH
Q psy17074 521 NAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADR------DMFCAGRVPE-----EDLK 589 (632)
Q Consensus 521 ~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~------~I~~v~~v~~-----~~L~ 589 (632)
++++++. ++++++.+.|++|||++++|++.|+++|.++ ||++|+++++ ++|+
T Consensus 227 ------~~~~~~~-----------~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~ 289 (542)
T PRK12849 227 ------SSLQDLL-----------PLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLE 289 (542)
T ss_pred ------CCHHHHH-----------HHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHH
Confidence 4555554 4689999999999999999999999999999 9999999984 4599
Q ss_pred HHHHHcCCeEee-----cccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 590 RTMKACGGAVMT-----TAHDLNDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 590 rIa~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
|||++|||++++ +++++++++||+|+.|++.+ ++|++|+|
T Consensus 290 ~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g 334 (542)
T PRK12849 290 DIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITK---DNTTIVDG 334 (542)
T ss_pred HHHHHhCCEEecccccCCcccCCHHHCceeeEEEEee---eeEEEEeC
Confidence 999999999999 68999999999999999854 88888864
No 55
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=7.8e-43 Score=389.87 Aligned_cols=240 Identities=14% Similarity=0.155 Sum_probs=218.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCc------eEEE-----eCCchhHHHHHHHhCCEEec-----ccc
Q psy17074 59 KILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM------FCAG-----RVPEEDLKRTMKACGGAVMT-----TAH 122 (632)
Q Consensus 59 ~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I------~~~~-----~v~~~~l~~ia~~tGa~ii~-----~l~ 122 (632)
+.+.++++++.+.|+||||++++|++.|+++|..||| ++++ ++++++|+|||.+|||++++ +++
T Consensus 231 ~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~ 310 (541)
T PRK12851 231 QDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLE 310 (541)
T ss_pred HHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcC
Confidence 3588999999999999999999999999999999997 5555 59999999999999999999 789
Q ss_pred CCCCCCCCCcceEEEEEEcceEEEEEeccCCC-----------------------------------ceEEEEecCCChh
Q psy17074 123 DLNDSVLGTCAVFDERQIGSERFNVFSGCKNA-----------------------------------RTCTIIVRGGAEQ 167 (632)
Q Consensus 123 ~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~-----------------------------------~~~TI~lrG~t~~ 167 (632)
++++++||+|+.|++.+ ++|+++++|.++ .++||+|||+|+.
T Consensus 311 ~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~ 387 (541)
T PRK12851 311 NVTLEQLGRAKKVVVEK---ENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEV 387 (541)
T ss_pred cCCHHHcCCccEEEEEc---ceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHH
Confidence 99999999999996655 889999988764 3889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhccCCCccccCCCCCcceeeeccccccccccccc-CCC
Q psy17074 168 FLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPK 246 (632)
Q Consensus 168 ~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG 246 (632)
+++|++|+++|||+++++++++| +|||||++|+++|..|++++...++ +++++++| ++||+.||++|+ |||
T Consensus 388 ~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~s~~L~~~~~~~~~------~~~~~~~~-a~AL~~ip~~La~NaG 459 (541)
T PRK12851 388 EVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRAVKALDKLETANGD------QRTGVEIV-RRALEAPVRQIAENAG 459 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHHHHHHHHHhcCCcH------HHHHHHHH-HHHHHHHHHHHHHhcC
Confidence 99999999999999999999998 9999999999999999988743444 45677888 999999999998 999
Q ss_pred CchhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccccc
Q psy17074 247 IALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQYF 313 (632)
Q Consensus 247 ~~~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~~ 313 (632)
+|+.+++.+|++.|. .+|||. .+|+++||.+.|||||+ +++|++|+++|+++|++|++|...-
T Consensus 460 ~d~~~vl~~l~~~~~--~~G~d~--~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~id~iI~~~~ 525 (541)
T PRK12851 460 AEGSVVVGKLREKPG--GYGFNA--ATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKP 525 (541)
T ss_pred CCHHHHHHHHHhhCC--CeeeeC--CCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhHHHhhhcCC
Confidence 999999999988764 489999 99999999999999999 8999999999999999999997753
No 56
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=5.1e-41 Score=373.98 Aligned_cols=257 Identities=18% Similarity=0.290 Sum_probs=225.5
Q ss_pred cCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccCh----HhHHHHHHHHhccccc-
Q psy17074 338 SQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHP----AAKTLVDIAKSQDAEI- 412 (632)
Q Consensus 338 ~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP----~akll~~~a~~q~~~~- 412 (632)
.+|.+++..|++||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++|| +|+|++++|++||+++
T Consensus 4 ~~g~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~G 83 (520)
T cd03344 4 KFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAG 83 (520)
T ss_pred cchHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhccccC
Confidence 46788999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred -------------------------ccCC---------------------chhhHHHHHHHHhhhcCCccccchhhHHHH
Q psy17074 413 -------------------------QKSD---------------------SGEYRGLLEKCAATALSSKLIHQQKGFFSK 446 (632)
Q Consensus 413 -------------------------~~~~---------------------~~~~~~~L~~va~t~l~sK~~~~~~~~l~~ 446 (632)
+|.. ...+.+.|.++|+|++++ +++|++
T Consensus 84 DGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~------~~~l~~ 157 (520)
T cd03344 84 DGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANG------DEEIGE 157 (520)
T ss_pred CCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCC------hHHHHH
Confidence 1110 012466789999998764 589999
Q ss_pred HHHHHHHHhcccCCCCcEEEEEecCCCccc-ceeEEeEEEecccCCCCCc----CCceeecCceEEEecccchhhhccCC
Q psy17074 447 MVVDAVMSLDDLLPLNMIGIKKVAGGALED-SLLVDGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAERDN 521 (632)
Q Consensus 447 li~~A~~~v~~~~~~~~I~I~ki~Gg~~~d-S~li~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~~~ 521 (632)
++++|+..++.+ +.|.+ ..||+..| +++++|++|++++.+|+|. +|++.++||+|+++|+++
T Consensus 158 lv~~A~~~v~~~---~~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l-------- 224 (520)
T cd03344 158 LIAEAMEKVGKD---GVITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKI-------- 224 (520)
T ss_pred HHHHHHHHhccC---CcEEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCC--------
Confidence 999999998743 34544 48999988 7999999999999999873 356789999999999995
Q ss_pred ceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCc------EEEecC-----CchhHHH
Q psy17074 522 AEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM------FCAGRV-----PEEDLKR 590 (632)
Q Consensus 522 ~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I------~~v~~v-----~~~~L~r 590 (632)
++++++. ++++.+.+.|+||||++++|++.++++|..+|| ++|+++ ++++|+|
T Consensus 225 -----~~~~~l~-----------~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~ 288 (520)
T cd03344 225 -----SSIQELL-----------PILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLED 288 (520)
T ss_pred -----CCHHHHH-----------HHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHH
Confidence 4555544 458999999999999999999999999999998 999988 7899999
Q ss_pred HHHHcCCeEee-----cccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 591 TMKACGGAVMT-----TAHDLNDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 591 Ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
||++|||++++ +++++++++||+|+.|++++ ++|++|+|
T Consensus 289 la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~ 332 (520)
T cd03344 289 IAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK---DDTTIIGG 332 (520)
T ss_pred HHHHhCCEEecccccCCcccCCHHHCCcceEEEEee---ceEEEEeC
Confidence 99999999999 78999999999999999977 78888864
No 57
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=3.8e-41 Score=377.73 Aligned_cols=258 Identities=19% Similarity=0.285 Sum_probs=224.9
Q ss_pred cccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccCh----HhHHHHHHHHhcccc
Q psy17074 336 ENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHP----AAKTLVDIAKSQDAE 411 (632)
Q Consensus 336 ~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP----~akll~~~a~~q~~~ 411 (632)
+..++.+++..|+.||..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++|| +|+|++++|++||++
T Consensus 16 ~~~~~~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd~e 95 (555)
T PTZ00114 16 EIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDK 95 (555)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhccc
Confidence 4567789999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred c--------------------------ccCC---------------------chhhHHHHHHHHhhhcCCccccchhhHH
Q psy17074 412 I--------------------------QKSD---------------------SGEYRGLLEKCAATALSSKLIHQQKGFF 444 (632)
Q Consensus 412 ~--------------------------~~~~---------------------~~~~~~~L~~va~t~l~sK~~~~~~~~l 444 (632)
+ +|.. ...+.+.|.++|+|++++ ++.|
T Consensus 96 vGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~------~~~l 169 (555)
T PTZ00114 96 AGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANG------DVEI 169 (555)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCC------hHHH
Confidence 9 0100 011456789999988654 5789
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEecCCCcccc-eeEEeEEEecccCCCCCc----CCceeecCceEEEecccchhhhcc
Q psy17074 445 SKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDS-LLVDGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAER 519 (632)
Q Consensus 445 ~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS-~li~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~ 519 (632)
++++++|+..++.+ + .|.+..|++..|| ++++|++|+++|.+|+|. +|++.++||+|+++|++|+
T Consensus 170 ~~li~eAv~~vg~~---g--~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~----- 239 (555)
T PTZ00114 170 GSLIADAMDKVGKD---G--TITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKIS----- 239 (555)
T ss_pred HHHHHHHHHHhCcC---C--cEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCC-----
Confidence 99999999998743 2 2666789999998 799999999999999883 5899999999999999976
Q ss_pred CCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCC------cEEEecC-----CchhH
Q psy17074 520 DNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRD------MFCAGRV-----PEEDL 588 (632)
Q Consensus 520 ~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~------I~~v~~v-----~~~~L 588 (632)
++++ +.++++.+++.|+||||++++|++.++++|..++ |++|+++ ++++|
T Consensus 240 --------~~~~-----------i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l 300 (555)
T PTZ00114 240 --------SIQS-----------ILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDIL 300 (555)
T ss_pred --------CHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHH
Confidence 3333 4566899999999999999999999999999986 9999985 56999
Q ss_pred HHHHHHcCCeEeecc------cCCCCCCCeeeeEEEEEEEcCeEEEEec
Q psy17074 589 KRTMKACGGAVMTTA------HDLNDSVLGTCAVFDERQIGSERDTLNR 631 (632)
Q Consensus 589 ~rIa~~tGa~ii~~l------~~l~~~~lG~~~~v~~~~ig~~~~~~~~ 631 (632)
+|||++|||++++++ +++++++||+|++|++++ +++++|+
T Consensus 301 ~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~---~~~~~~~ 346 (555)
T PTZ00114 301 QDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK---DETVILT 346 (555)
T ss_pred HHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe---ceEEEEe
Confidence 999999999999997 888889999999999988 5555653
No 58
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.4e-42 Score=386.24 Aligned_cols=239 Identities=14% Similarity=0.174 Sum_probs=218.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCc------eEEEe-----CCchhHHHHHHHhCCEEec-----ccc
Q psy17074 59 KILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM------FCAGR-----VPEEDLKRTMKACGGAVMT-----TAH 122 (632)
Q Consensus 59 ~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I------~~~~~-----v~~~~l~~ia~~tGa~ii~-----~l~ 122 (632)
+.+.++++++.+.|+||||++++|++.|+++|..||| +++++ +++.+|+|||++|||++++ +++
T Consensus 231 ~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~ 310 (544)
T PRK12850 231 QDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLE 310 (544)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcc
Confidence 3589999999999999999999999999999999999 77665 8999999999999999999 789
Q ss_pred CCCCCCCCCcceEEEEEEcceEEEEEeccCCC-----------------------------------ceEEEEecCCChh
Q psy17074 123 DLNDSVLGTCAVFDERQIGSERFNVFSGCKNA-----------------------------------RTCTIIVRGGAEQ 167 (632)
Q Consensus 123 ~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~-----------------------------------~~~TI~lrG~t~~ 167 (632)
++++++||+|+.|++. .++|++|++|.++ ++|||+|||+|+.
T Consensus 311 ~~~~~~LG~~~~v~~~---~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~ 387 (544)
T PRK12850 311 NVTLDMLGRAKRVLIT---KENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEV 387 (544)
T ss_pred cCCHHHcCCCcEEEEE---eeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHH
Confidence 9999999999999655 4789999988764 4899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhccCCCccccCCCCCcceeeeccccccccccccc-CCC
Q psy17074 168 FLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPK 246 (632)
Q Consensus 168 ~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG 246 (632)
+++|++|+++|||+++++++++| +|||||++|++++..|+++...+++ +++++++| ++||+.||++|+ |||
T Consensus 388 ~l~E~er~i~DAl~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~~~~~~~------~~~~i~~~-a~Al~~ip~~La~NaG 459 (544)
T PRK12850 388 EVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRARSALRGLKGANAD------ETAGIDIV-RRALEEPLRQIATNAG 459 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHhccCCChH------HHHHHHHH-HHHHHHHHHHHHHhcC
Confidence 99999999999999999999998 9999999999999999988433444 45677888 999999999998 999
Q ss_pred CchhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074 247 IALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY 312 (632)
Q Consensus 247 ~~~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~ 312 (632)
+|+.+++.+|++.|. .+|||+ .+|++.||.+.|||||+ .++|++|+++|+++|++|++|...
T Consensus 460 ~d~~~v~~~l~~~~~--~~G~d~--~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~ 524 (544)
T PRK12850 460 FEGSVVVGKVAELPG--NFGFNA--QTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEA 524 (544)
T ss_pred CCHHHHHHHHHhhCC--CcceeC--CCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhHHHhhccC
Confidence 999999999988764 489999 99999999999999999 899999999999999999998765
No 59
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=6.5e-41 Score=373.81 Aligned_cols=258 Identities=16% Similarity=0.260 Sum_probs=223.1
Q ss_pred ccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccCh----HhHHHHHHHHhccccc
Q psy17074 337 NSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHP----AAKTLVDIAKSQDAEI 412 (632)
Q Consensus 337 ~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP----~akll~~~a~~q~~~~ 412 (632)
..+|.+++..|+.|+..|+++++|||||+||+|||+++.|+++|||||+||+++|+++|| +|+|++++|++||+++
T Consensus 4 ~~~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~ 83 (524)
T TIGR02348 4 IKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDVA 83 (524)
T ss_pred ccccHHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCcee
Confidence 346789999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred --------------------------ccCC---------------------chhhHHHHHHHHhhhcCCccccchhhHHH
Q psy17074 413 --------------------------QKSD---------------------SGEYRGLLEKCAATALSSKLIHQQKGFFS 445 (632)
Q Consensus 413 --------------------------~~~~---------------------~~~~~~~L~~va~t~l~sK~~~~~~~~l~ 445 (632)
+|.. ...+.+.|.++|+|+.+ ++++|+
T Consensus 84 GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~------~~~~l~ 157 (524)
T TIGR02348 84 GDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGKKEIAQVATISAN------NDEEIG 157 (524)
T ss_pred CCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcc------ChHHHH
Confidence 0100 01145678888888743 578999
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEecCCCc-ccceeEEeEEEecccCCCCCc----CCceeecCceEEEecccchhhhccC
Q psy17074 446 KMVVDAVMSLDDLLPLNMIGIKKVAGGAL-EDSLLVDGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAERD 520 (632)
Q Consensus 446 ~li~~A~~~v~~~~~~~~I~I~ki~Gg~~-~dS~li~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~~ 520 (632)
+++++|+..++.+ +.|.|. .|+.. .+|++++|++|+++|.+|+|. +|++.++||+|+++++.+
T Consensus 158 ~lv~~A~~~v~~~---~~i~v~--~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i------- 225 (524)
T TIGR02348 158 SLIAEAMEKVGKD---GVITVE--ESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKI------- 225 (524)
T ss_pred HHHHHHHHHhCcC---CcEeee--cCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCc-------
Confidence 9999999998743 345555 36666 669999999999999999873 478999999999999974
Q ss_pred CceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHC------CcEEEecCCc-----hhHH
Q psy17074 521 NAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADR------DMFCAGRVPE-----EDLK 589 (632)
Q Consensus 521 ~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~------~I~~v~~v~~-----~~L~ 589 (632)
++++++ .++++.+++.|+||||++++|++.++++|..+ ||++|+++++ ++|+
T Consensus 226 ------~~~~~i-----------~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~ 288 (524)
T TIGR02348 226 ------SNIKDL-----------LPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLE 288 (524)
T ss_pred ------CCHHHH-----------HHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHH
Confidence 355554 56699999999999999999999999999997 8999999965 8999
Q ss_pred HHHHHcCCeEee-----cccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 590 RTMKACGGAVMT-----TAHDLNDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 590 rIa~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
|||++|||++++ +++++++++||+|+.|++.. +++++|+|
T Consensus 289 ~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~ 333 (524)
T TIGR02348 289 DIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK---DNTTIVEG 333 (524)
T ss_pred HHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee---cEEEEEcC
Confidence 999999999999 89999999999999999875 78888864
No 60
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.5e-42 Score=386.91 Aligned_cols=240 Identities=14% Similarity=0.184 Sum_probs=219.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHC------CceEEEe-----CCchhHHHHHHHhCCEEec-----ccc
Q psy17074 59 KILYEKLDKIHASGAQVVLSKLPIGDVATQYFADR------DMFCAGR-----VPEEDLKRTMKACGGAVMT-----TAH 122 (632)
Q Consensus 59 ~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~------~I~~~~~-----v~~~~l~~ia~~tGa~ii~-----~l~ 122 (632)
+.+.++++.+.+.|+||||++++|++.|+++|..| +|+++++ +++++|+|||++|||++++ +++
T Consensus 231 ~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~ 310 (545)
T PRK12852 231 QAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLE 310 (545)
T ss_pred HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcC
Confidence 48899999999999999999999999999999987 6888875 4599999999999999999 799
Q ss_pred CCCCCCCCCcceEEEEEEcceEEEEEeccCC-----------------------------------CceEEEEecCCChh
Q psy17074 123 DLNDSVLGTCAVFDERQIGSERFNVFSGCKN-----------------------------------ARTCTIIVRGGAEQ 167 (632)
Q Consensus 123 ~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~-----------------------------------~~~~TI~lrG~t~~ 167 (632)
++++++||+|+.|++.. +++++++++.. ++++||+|||+|+.
T Consensus 311 ~~~~~~lG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~ 387 (545)
T PRK12852 311 NVTLKMLGRAKKVVIDK---ENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEV 387 (545)
T ss_pred CCCHHHCCCCcEEEEEc---cEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHH
Confidence 99999999999996554 78899998765 37899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhccCCCccccCCCCCcceeeeccccccccccccc-CCC
Q psy17074 168 FLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPK 246 (632)
Q Consensus 168 ~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG 246 (632)
+++|++|+++||+|++++++++| +|||||++|++++.+|++++...++ +++++++| ++||+.||++|+ |||
T Consensus 388 ~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~s~~L~~~~~~~~~------~q~~i~~~-a~AL~~ip~~La~NaG 459 (545)
T PRK12852 388 EVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRAKKAVGRINNDNAD------VQAGINIV-LKALEAPIRQIAENAG 459 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHHHHHHHHHhhcCCcH------HHHHHHHH-HHHHHHHHHHHHHHcC
Confidence 99999999999999999999998 9999999999999999998744444 45677888 999999999998 999
Q ss_pred CchhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074 247 IALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY 312 (632)
Q Consensus 247 ~~~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~ 312 (632)
+|+.+++.+|++.| +..+|||+ .+|+++||.+.|||||+ +++|++|+++|+++|++|++|...
T Consensus 460 ~d~~~vl~~l~~~~-~~~~G~d~--~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~iI~~~ 525 (545)
T PRK12852 460 VEGSIVVGKILENK-SETFGFDA--QTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAEL 525 (545)
T ss_pred CCHHHHHHHHHhhc-CCCeeEeC--cCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhHHHHhhcC
Confidence 99999999998767 45689999 99999999999999999 899999999999999999999874
No 61
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.1e-42 Score=384.74 Aligned_cols=238 Identities=16% Similarity=0.185 Sum_probs=217.1
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHC------CceEEEeCC-----chhHHHHHHHhCCEEec-----cccC
Q psy17074 60 ILYEKLDKIHASGAQVVLSKLPIGDVATQYFADR------DMFCAGRVP-----EEDLKRTMKACGGAVMT-----TAHD 123 (632)
Q Consensus 60 ~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~------~I~~~~~v~-----~~~l~~ia~~tGa~ii~-----~l~~ 123 (632)
.+.++++++.+.|+||||++++|++.|+++|..| ||+++++++ +++|+|||.+|||++++ ++++
T Consensus 231 ~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~ 310 (542)
T PRK12849 231 DLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEE 310 (542)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCccc
Confidence 4667899999999999999999999999999999 899998776 55699999999999999 6899
Q ss_pred CCCCCCCCcceEEEEEEcceEEEEEeccCCC-----------------------------------ceEEEEecCCChhh
Q psy17074 124 LNDSVLGTCAVFDERQIGSERFNVFSGCKNA-----------------------------------RTCTIIVRGGAEQF 168 (632)
Q Consensus 124 l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~-----------------------------------~~~TI~lrG~t~~~ 168 (632)
+++++||+|+.|++ ++++|+++++|.++ +.|||+|||+|+.+
T Consensus 311 ~~~~~LG~~~~v~~---~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~ 387 (542)
T PRK12849 311 VTLDDLGRAKRVTI---TKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVE 387 (542)
T ss_pred CCHHHCceeeEEEE---eeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHH
Confidence 99999999999955 45889999988764 58999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhccCCCccccCCCCCcceeeeccccccccccccc-CCCC
Q psy17074 169 LEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKI 247 (632)
Q Consensus 169 l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~ 247 (632)
++|.+|+++|||+++++++++| +|||||++|+++|.+|++++...++ +++++++| ++||+.||++|+ |||+
T Consensus 388 l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ls~~L~~~~~~~g~------~~~~i~~~-a~Al~~ip~~La~NaG~ 459 (542)
T PRK12849 388 LKERKDRVEDALNATRAAVEEG-IVPGGGVALLRAAKALDELAGLNGD------QAAGVEIV-RRALEAPLRQIAENAGL 459 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHHHHHHHHHhhCCChH------HHHHHHHH-HHHHHHHHHHHHHHCCC
Confidence 9999999999999999999998 9999999999999999998743444 45677898 999999999998 9999
Q ss_pred chhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074 248 ALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY 312 (632)
Q Consensus 248 ~~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~ 312 (632)
|+.+++.+|++.|. .+|||. .+|+++||.+.|||||+ .++|++|+++|+++|++|++|...
T Consensus 460 d~~~vi~~L~~~~~--~~G~d~--~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~~~ 523 (542)
T PRK12849 460 DGSVVVAKVLELED--GFGFNA--ATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADK 523 (542)
T ss_pred CHHHHHHHHHhhCC--CcceeC--CCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHhcC
Confidence 99999999988763 489999 99999999999999999 899999999999999999999764
No 62
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3e-42 Score=384.84 Aligned_cols=238 Identities=16% Similarity=0.189 Sum_probs=217.3
Q ss_pred HHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCC------ceEEEeCC-----chhHHHHHHHhCCEEec-----cccCC
Q psy17074 61 LYEKLDKIHASGAQVVLSKLPIGDVATQYFADRD------MFCAGRVP-----EEDLKRTMKACGGAVMT-----TAHDL 124 (632)
Q Consensus 61 i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~------I~~~~~v~-----~~~l~~ia~~tGa~ii~-----~l~~l 124 (632)
+.++++++.+.|+||||++++|++.|+++|..|+ |+++++++ +++|+|||.+|||++++ +++++
T Consensus 232 l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~ 311 (542)
T PRK00013 232 LLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDA 311 (542)
T ss_pred HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccC
Confidence 5588999999999999999999999999999997 88888665 88999999999999999 79999
Q ss_pred CCCCCCCcceEEEEEEcceEEEEEeccCCCc-----------------------------------eEEEEecCCChhhH
Q psy17074 125 NDSVLGTCAVFDERQIGSERFNVFSGCKNAR-----------------------------------TCTIIVRGGAEQFL 169 (632)
Q Consensus 125 ~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~-----------------------------------~~TI~lrG~t~~~l 169 (632)
++++||+|+.|++. .++|++|++|.++. .+||+|||+|+.++
T Consensus 312 ~~~~LG~~~~v~~~---~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l 388 (542)
T PRK00013 312 TLEDLGQAKKVVVT---KDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEM 388 (542)
T ss_pred CHHHCCeeeEEEEe---cCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHH
Confidence 99999999999654 58899999887754 78999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhccCCCccccCCCCCcceeeeccccccccccccc-CCCCc
Q psy17074 170 EETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIA 248 (632)
Q Consensus 170 ~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~ 248 (632)
+|++|+++|||+++++++++| +|||||++|+++|.+|+++....++ +++++++| ++||+.||++|+ |||+|
T Consensus 389 ~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~s~~L~~~~~~~~~------~~~~i~~~-a~Al~~ip~~La~NaG~d 460 (542)
T PRK00013 389 KEKKDRVEDALHATRAAVEEG-IVPGGGVALLRAAPALEALKGLNGD------EATGINIV-LRALEAPLRQIAENAGLE 460 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHHHHHHHHhcCCChH------HHHHHHHH-HHHHHHHHHHHHHHcCCC
Confidence 999999999999999999998 9999999999999999988433444 45677888 999999999998 99999
Q ss_pred hhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074 249 LLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY 312 (632)
Q Consensus 249 ~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~ 312 (632)
+.+++.+|+..| +..+|||. .+|+++||.+.|||||+ +++|++|+++|+++|++|++|...
T Consensus 461 ~~~vl~~l~~~~-~~~~G~d~--~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~ 524 (542)
T PRK00013 461 GSVVVEKVKNGK-GKGYGYNA--ATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVVADK 524 (542)
T ss_pred HHHHHHHHHhhc-CCCEeEeC--CCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999998877 45589999 99999999999999999 899999999999999999998764
No 63
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=7.4e-42 Score=380.72 Aligned_cols=236 Identities=16% Similarity=0.192 Sum_probs=216.2
Q ss_pred HHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCc------eEEEe-----CCchhHHHHHHHhCCEEec-----cccCC
Q psy17074 61 LYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM------FCAGR-----VPEEDLKRTMKACGGAVMT-----TAHDL 124 (632)
Q Consensus 61 i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I------~~~~~-----v~~~~l~~ia~~tGa~ii~-----~l~~l 124 (632)
+.++++++.+.|+||||++++|++.|+++|..||| .++++ +++++|+|||.+|||++++ +++++
T Consensus 230 l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~ 309 (520)
T cd03344 230 LLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDV 309 (520)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccC
Confidence 66678999999999999999999999999999999 66654 4899999999999999999 78899
Q ss_pred CCCCCCCcceEEEEEEcceEEEEEeccCCC-----------------------------------ceEEEEecCCChhhH
Q psy17074 125 NDSVLGTCAVFDERQIGSERFNVFSGCKNA-----------------------------------RTCTIIVRGGAEQFL 169 (632)
Q Consensus 125 ~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~-----------------------------------~~~TI~lrG~t~~~l 169 (632)
++++||+|+.|++.+ ++|+++++|..+ +.|||+|||+|+.++
T Consensus 310 ~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l 386 (520)
T cd03344 310 TLEDLGRAKKVVVTK---DDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVEL 386 (520)
T ss_pred CHHHCCcceEEEEee---ceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHH
Confidence 989999999996654 789999988664 599999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhccCCCccccCCCCCcceeeeccccccccccccc-CCCCc
Q psy17074 170 EETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIA 248 (632)
Q Consensus 170 ~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~ 248 (632)
+|++|+++||++++++++++| +|||||++|+++|.+|++++...+. +++++++| ++||+.||++|+ |||+|
T Consensus 387 ~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~~~~~~~------~~~~~~~~-a~Al~~ip~~La~NaG~d 458 (520)
T cd03344 387 KEKKDRVEDALNATRAAVEEG-IVPGGGVALLRASPALDKLKALNGD------EKLGIEIV-RRALEAPLRQIAENAGVD 458 (520)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHHHHHHHHHhccCChH------HHHHHHHH-HHHHHHHHHHHHHhcCCC
Confidence 999999999999999999998 9999999999999999998754444 55677898 999999999998 99999
Q ss_pred hhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074 249 LLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ 311 (632)
Q Consensus 249 ~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~ 311 (632)
+.+++++|+..|. .+|||. .+|+++||.+.|||||+ .++|++|+++|+++|++|++|++
T Consensus 459 ~~~vi~~l~~~~~--~~G~d~--~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~id~~i~~ 520 (520)
T cd03344 459 GSVVVEKVLESPD--GFGYDA--ATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVVD 520 (520)
T ss_pred HHHHHHHHHhhcC--CEeEEC--CCCcccchHhccCeecHHHHHHHHHHHHHHHHHHHhhheEEeC
Confidence 9999999998775 489999 99999999999999999 89999999999999999999863
No 64
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.9e-40 Score=370.63 Aligned_cols=259 Identities=17% Similarity=0.249 Sum_probs=224.9
Q ss_pred ccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccCh----HhHHHHHHHHhccccc
Q psy17074 337 NSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHP----AAKTLVDIAKSQDAEI 412 (632)
Q Consensus 337 ~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP----~akll~~~a~~q~~~~ 412 (632)
..++.+++..|+.|+..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++|| +|+|++++|++||+++
T Consensus 6 ~~~~~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~ 85 (541)
T PRK12851 6 VKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDVA 85 (541)
T ss_pred ecccHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhHhh
Confidence 346678999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred --------------------------ccCC---------------------chhhHHHHHHHHhhhcCCccccchhhHHH
Q psy17074 413 --------------------------QKSD---------------------SGEYRGLLEKCAATALSSKLIHQQKGFFS 445 (632)
Q Consensus 413 --------------------------~~~~---------------------~~~~~~~L~~va~t~l~sK~~~~~~~~l~ 445 (632)
+|.. ...+.+.|.++|++++ ++++.|+
T Consensus 86 GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~------~~~~~l~ 159 (541)
T PRK12851 86 GDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISA------NGDAEIG 159 (541)
T ss_pred CCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhc------cChHHHH
Confidence 0100 0113556788887764 4679999
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCc----CCceeecCceEEEecccchhhhccCC
Q psy17074 446 KMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAERDN 521 (632)
Q Consensus 446 ~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~~~ 521 (632)
+++++|+..++.+ +.+.|.+.. ++..++++++|++|+++|.+|+|. +|++.++||+|+++|++++
T Consensus 160 ~lv~~Av~~vg~~---g~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~------- 228 (541)
T PRK12851 160 RLVAEAMEKVGNE---GVITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKIS------- 228 (541)
T ss_pred HHHHHHHHHhccc---CceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcC-------
Confidence 9999999999743 456777666 567789999999999999999874 3899999999999999853
Q ss_pred ceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCc------EEEec-----CCchhHHH
Q psy17074 522 AEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM------FCAGR-----VPEEDLKR 590 (632)
Q Consensus 522 ~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I------~~v~~-----v~~~~L~r 590 (632)
+.+ .+.++++.+.+.|+||||++++|++.++++|..+|| ++|++ +++++|+|
T Consensus 229 ------~~~-----------~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ 291 (541)
T PRK12851 229 ------NLQ-----------DLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLED 291 (541)
T ss_pred ------cHH-----------HHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHH
Confidence 222 256779999999999999999999999999999996 99997 78999999
Q ss_pred HHHHcCCeEee-----cccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 591 TMKACGGAVMT-----TAHDLNDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 591 Ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
||++|||++++ +++++++++||+|+.|++++ ++|++|.|
T Consensus 292 ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~ 335 (541)
T PRK12851 292 IAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK---ENTTIIDG 335 (541)
T ss_pred HHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc---ceEEEEcC
Confidence 99999999999 68999999999999999987 88888864
No 65
>KOG0357|consensus
Probab=100.00 E-value=4.2e-42 Score=341.56 Aligned_cols=243 Identities=26% Similarity=0.412 Sum_probs=225.9
Q ss_pred HHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEEeccccCCCCCCCCCcceEEEEEE
Q psy17074 61 LYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQI 140 (632)
Q Consensus 61 i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~i 140 (632)
+.++++++++.|++|++|||++||+|.|+|.+|+.|+++||...++|-||++|||++++++++++++.||+|+.|++..+
T Consensus 144 f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~aglVrE~sf 223 (400)
T KOG0357|consen 144 FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVREISF 223 (400)
T ss_pred HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccHhhhCHhhccccceEEEEec
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c--ceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhccCCCccc
Q psy17074 141 G--SERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVR 218 (632)
Q Consensus 141 ~--~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~ 218 (632)
| ++++.+++.|++++.+||.+||++..+++|.||++|||||++|+.++|.++|+|||++|+.+|-++.+-+. ..
T Consensus 224 gttkdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead----~~ 299 (400)
T KOG0357|consen 224 GTTKDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEAD----KI 299 (400)
T ss_pred ccccceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhc----cC
Confidence 7 58999999999999999999999999999999999999999999999999999999999999998887652 34
Q ss_pred cCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC---CCccccccccccchhHhHHHHhHHHHH---HHH
Q psy17074 219 TGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD---NAEIRLDSVEEYQKVVDAEWKILYEKL---DKI 291 (632)
Q Consensus 219 ~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~---~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~ 291 (632)
.|+ +|+++++| ++|||+||..|| |+|++|++.++.+++.+- ++.+|+|+ .-..--||.+.+++||+ ++-
T Consensus 300 ~g~-eqya~raf-a~ale~ipmalaensgl~pi~~ls~~ka~q~~~~~~~lGidc--l~~G~nDMk~~~vie~l~~KkqQ 375 (400)
T KOG0357|consen 300 PGI-EQYAFRAF-ADALESIPMALAENSGLDPIETLSDVKARQVKEMNPALGIDC--LHKGTNDMKEQHVIETLIGKKQQ 375 (400)
T ss_pred CcH-HHHHHHHH-HHHHhhcchhhhhccCCCchhhhhHhHHHHHHhcCcccCcch--hccCchhhhhhccHHHhhhhHHH
Confidence 566 88999998 999999999998 999999999999976532 44589999 66667899999999999 778
Q ss_pred HHhhchhheecccccccccc
Q psy17074 292 HASGAQVVLSKLPIGDVATQ 311 (632)
Q Consensus 292 l~~a~~va~~~l~~~~ii~~ 311 (632)
+..|+.++.|+|++|++++.
T Consensus 376 i~laTQ~vrMiLKiddv~~~ 395 (400)
T KOG0357|consen 376 ISLATQMVRMILKIDDVRKP 395 (400)
T ss_pred HHHHHHHHHHhhhccceecC
Confidence 88999999999999998864
No 66
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=5.7e-42 Score=379.45 Aligned_cols=227 Identities=33% Similarity=0.530 Sum_probs=212.8
Q ss_pred EEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCC
Q psy17074 75 VVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNA 154 (632)
Q Consensus 75 lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~ 154 (632)
||+++++|++.|+++|.++||.+++++++++|+|||++|||+++++++++++.++|+|+.|++.+++++++++|.+|..+
T Consensus 231 lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~ 310 (464)
T cd00309 231 VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGG 310 (464)
T ss_pred EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCcccCccccEEEEEEEcCeeEEEEEecCCC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccc
Q psy17074 155 RTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPD 233 (632)
Q Consensus 155 ~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ 233 (632)
++|||+|||+|+.+++|+||+++||++++++++++|++|||||++||+++.+|++++. ..+. +++++++| ++
T Consensus 311 ~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~------~~~~~~~~-a~ 383 (464)
T cd00309 311 KVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGK------EQLGIEAF-AD 383 (464)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchH------HHHHHHHH-HH
Confidence 9999999999999999999999999999999999999999999999999999998874 3444 45577887 99
Q ss_pred cccccccccc-CCCCchhhHHHHHHhccCCC--ccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccc
Q psy17074 234 GFEMQPKTYK-NPKIALLNIELELKAERDNA--EIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGD 307 (632)
Q Consensus 234 ALe~ip~~La-NaG~~~~~v~~~l~~~~~~~--~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ 307 (632)
||+.||++|+ |||+|+.+++.+|+..|.+. ..|+|. .+|+|.||.+.|||||+ .++++.|+++|+++||+|+
T Consensus 384 aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~--~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ 461 (464)
T cd00309 384 ALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDV--ETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDD 461 (464)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEEC--CCCcEeehhhccCeecHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999998 99999999999999877543 268999 99999999999999999 8899999999999999999
Q ss_pred ccc
Q psy17074 308 VAT 310 (632)
Q Consensus 308 ii~ 310 (632)
+|.
T Consensus 462 ii~ 464 (464)
T cd00309 462 IIV 464 (464)
T ss_pred HhC
Confidence 873
No 67
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=8e-42 Score=381.73 Aligned_cols=254 Identities=14% Similarity=0.166 Sum_probs=224.9
Q ss_pred cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHH------CCceEEEeC-----CchhHH
Q psy17074 39 EEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD------RDMFCAGRV-----PEEDLK 107 (632)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~------~~I~~~~~v-----~~~~l~ 107 (632)
+..+.+++ ..+..+ +.+.++++++.+.|+||||++++|+++|+++|.. .+|.++++. ++++|+
T Consensus 217 ~~~Ilv~d-~~i~~~-----~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~ 290 (546)
T PRK14104 217 DAYILINE-KKLSSL-----NELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQ 290 (546)
T ss_pred CcEEEEeh-hhhcCH-----HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHH
Confidence 45666665 233333 3488999999999999999999999999999996 457777544 589999
Q ss_pred HHHHHhCCEEecc-----ccCCCCCCCCCcceEEEEEEcceEEEEEeccCCC----------------------------
Q psy17074 108 RTMKACGGAVMTT-----AHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNA---------------------------- 154 (632)
Q Consensus 108 ~ia~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~---------------------------- 154 (632)
|||.+|||+++++ ++++++++||+|++| ++++++++++++|.++
T Consensus 291 ~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v---~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~e 367 (546)
T PRK14104 291 DIAILTGGQAISEDLGIKLENVTLQMLGRAKKV---MIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQE 367 (546)
T ss_pred HHHHHhCCEEEecCCCCCcCcCCHHHCCceeEE---EEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999998 899999999999999 5688999999998774
Q ss_pred -------ceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhccCCCccccCCCCCcce
Q psy17074 155 -------RTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSF 227 (632)
Q Consensus 155 -------~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~ 227 (632)
+++||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++..|+++....++ +++++
T Consensus 368 Ri~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~s~~L~~~~~~~~~------~~~~i 440 (546)
T PRK14104 368 RLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRASEQLKGIKTKNDD------QKTGV 440 (546)
T ss_pred HHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHHHHHHHHhhcCChH------HHHHH
Confidence 899999999999999999999999999999999998 9999999999999999987543344 45577
Q ss_pred eeeccccccccccccc-CCCCchhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheecc
Q psy17074 228 HAISPDGFEMQPKTYK-NPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKL 303 (632)
Q Consensus 228 ~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l 303 (632)
++| ++||+.||++|+ |||+|+.+++.+|+..+ +..+|||. .+|+++||.+.|||||+ +++|++|+++|+++|
T Consensus 441 ~~~-a~Al~~ip~~La~NaG~d~~~v~~~l~~~~-~~~~G~d~--~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL 516 (546)
T PRK14104 441 EIV-RKALSAPARQIAINAGEDGSVIVGKILEKE-QYSYGFDS--QTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLI 516 (546)
T ss_pred HHH-HHHHHhhHHHHHHhCCCCHHHHHHHHHhcC-CCcEeEeC--CCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHH
Confidence 888 999999999998 99999999999998655 44589999 99999999999999999 899999999999999
Q ss_pred ccccccccc
Q psy17074 304 PIGDVATQY 312 (632)
Q Consensus 304 ~~~~ii~~~ 312 (632)
++|++|...
T Consensus 517 ~id~~I~~~ 525 (546)
T PRK14104 517 TTEAMVAEL 525 (546)
T ss_pred HHHHHHhcC
Confidence 999999764
No 68
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4e-40 Score=368.32 Aligned_cols=259 Identities=15% Similarity=0.225 Sum_probs=221.2
Q ss_pred ccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChH----hHHHHHHHHhccccc
Q psy17074 337 NSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPA----AKTLVDIAKSQDAEI 412 (632)
Q Consensus 337 ~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~----akll~~~a~~q~~~~ 412 (632)
..++.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+|||++|+++||+ |+|++++|++||+++
T Consensus 6 ~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~e~ 85 (544)
T PRK12850 6 IRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDLA 85 (544)
T ss_pred ecccHHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcchh
Confidence 3467899999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred --------------------------ccCC---------------------chhhHHHHHHHHhhhcCCccccchhhHHH
Q psy17074 413 --------------------------QKSD---------------------SGEYRGLLEKCAATALSSKLIHQQKGFFS 445 (632)
Q Consensus 413 --------------------------~~~~---------------------~~~~~~~L~~va~t~l~sK~~~~~~~~l~ 445 (632)
+|.. ...+.+.|.+++++++++ ++.|+
T Consensus 86 GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~------~~~l~ 159 (544)
T PRK12850 86 GDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANG------DESIG 159 (544)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCC------HHHHH
Confidence 1110 011456688888887554 58999
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCc----CCceeecCceEEEecccchhhhccCC
Q psy17074 446 KMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAERDN 521 (632)
Q Consensus 446 ~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~~~ 521 (632)
+++++|+..++.+ +.+.+....+ .-.++++++|++|+++|.+|+|. +|++.++||+|+++|+.+
T Consensus 160 ~lv~eAv~~vg~~---g~i~v~~~~~-~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i-------- 227 (544)
T PRK12850 160 EMIAEAMDKVGKE---GVITVEEAKT-LGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKI-------- 227 (544)
T ss_pred HHHHHHHHHhccc---CceeeEEccc-cCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEeccc--------
Confidence 9999999999743 2344433221 12688999999999999999873 478999999999999964
Q ss_pred ceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCc------EEEec-----CCchhHHH
Q psy17074 522 AEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM------FCAGR-----VPEEDLKR 590 (632)
Q Consensus 522 ~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I------~~v~~-----v~~~~L~r 590 (632)
++.+ .+.++++.+.+.|++|||++++|++.++++|..+|| ++|++ .++++|+|
T Consensus 228 -----~~~~-----------~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ 291 (544)
T PRK12850 228 -----SNLQ-----------DLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLED 291 (544)
T ss_pred -----CCHH-----------HHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHH
Confidence 2322 266779999999999999999999999999999999 99998 67899999
Q ss_pred HHHHcCCeEee-----cccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 591 TMKACGGAVMT-----TAHDLNDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 591 Ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
||++|||++++ +++++++++||+|++|++.. ++|++|+|
T Consensus 292 ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g 335 (544)
T PRK12850 292 IAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK---ENTTIIDG 335 (544)
T ss_pred HHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe---eeEEEEeC
Confidence 99999999999 78999999999999999876 78888864
No 69
>KOG0363|consensus
Probab=100.00 E-value=3.2e-41 Score=337.71 Aligned_cols=265 Identities=25% Similarity=0.391 Sum_probs=252.1
Q ss_pred cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEEe
Q psy17074 39 EEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVM 118 (632)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ii 118 (632)
.+++.+.+..++.++...|++.|+..+++|.+.|+|+.|...-|.++..++|...||+++.+...+-+||++..||+.++
T Consensus 248 GarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiERLalvtGGeI~ 327 (527)
T KOG0363|consen 248 GARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIERLALVTGGEIV 327 (527)
T ss_pred cceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhHHHHhhcccceee
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCh
Q psy17074 119 TTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGA 198 (632)
Q Consensus 119 ~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa 198 (632)
+++++.....+|+|+.+++.-+|+++++.|+||..+..|||+|||+|.+++||.+|++|||||++...++|.+++.||||
T Consensus 328 STFd~p~~~klG~C~~IeeimiGed~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~ 407 (527)
T KOG0363|consen 328 STFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGC 407 (527)
T ss_pred eccCCcchhccccchhhHHHhcCccceeeecccccccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCCCc--cccccccccc
Q psy17074 199 IEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDNAE--IRLDSVEEYQ 274 (632)
Q Consensus 199 ~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~~~--~G~d~~~~~~ 274 (632)
.||.+++.+.+++. ..|+ +.+++++| ++||..+|.+|| |||+|+.+++++|++.|.+.. +|+|. .+|
T Consensus 408 sEm~Ma~av~~~A~~~pGk------ea~AieAf-arAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~--~~G 478 (527)
T KOG0363|consen 408 SEMLMAKAVDKEAQETPGK------EALAIEAF-ARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDV--RNG 478 (527)
T ss_pred HHHHHHHHHHHHHhhCCch------hhHHHHHH-HHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCccccccc--ccC
Confidence 99999999999984 3444 56688998 999999999999 999999999999999987553 79999 999
Q ss_pred hhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074 275 KVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY 312 (632)
Q Consensus 275 ~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~ 312 (632)
++.||.+.||+|.+ ++.+.+|++.|-++||.|+||.+.
T Consensus 479 ~i~dm~~~Gi~es~~vK~~vv~sasEaae~ilrvD~Iik~a 519 (527)
T KOG0363|consen 479 EIGDMRELGIVESLKVKQAVVSSASEAAEMILRVDNIIKAA 519 (527)
T ss_pred chhhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhcC
Confidence 99999999999999 778889999999999999999875
No 70
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=1e-40 Score=374.86 Aligned_cols=254 Identities=19% Similarity=0.290 Sum_probs=220.0
Q ss_pred cccCCc--hhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChH----hHHHHHHHHhcc
Q psy17074 336 ENSQGK--PQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPA----AKTLVDIAKSQD 409 (632)
Q Consensus 336 ~~~~~~--~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~----akll~~~a~~q~ 409 (632)
...+|. ++|...+.||+.|+++|+|||||+||+|||++++|+++|||||+||+++|+++||+ |+|++++|++||
T Consensus 58 ~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd 137 (600)
T PLN03167 58 ELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 137 (600)
T ss_pred eeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhh
Confidence 344667 69999999999999999999999999999999999999999999999999999995 999999999999
Q ss_pred ccc--------------------------ccCC--------------------chhhHHHHHHHHhhhcCCccccchhhH
Q psy17074 410 AEI--------------------------QKSD--------------------SGEYRGLLEKCAATALSSKLIHQQKGF 443 (632)
Q Consensus 410 ~~~--------------------------~~~~--------------------~~~~~~~L~~va~t~l~sK~~~~~~~~ 443 (632)
+++ +|.. ...+.+.|.++|+++++ +++.
T Consensus 138 ~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d~~L~~vA~tS~~------~~~~ 211 (600)
T PLN03167 138 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDSELADVAAVSAG------NNYE 211 (600)
T ss_pred hhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHhcc------CcHH
Confidence 999 0100 00012468889888865 4478
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEecCCCcccc-eeEEeEEEecccCCCCCc----CCceeecCceEEEecccchhhhc
Q psy17074 444 FSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDS-LLVDGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAE 518 (632)
Q Consensus 444 l~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS-~li~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~ 518 (632)
|++|+++|+..++++ +.|.+. .|++..|+ ++++|++|+++|.||||. +|++.++||+|+++++.
T Consensus 212 i~~liaeAv~~Vg~~---g~i~v~--~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~------ 280 (600)
T PLN03167 212 VGNMIAEAMSKVGRK---GVVTLE--EGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKK------ 280 (600)
T ss_pred HHHHHHHHHHHhccC---CcEEec--cCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccc------
Confidence 999999999999743 334333 78899987 899999999999999884 48899999999999986
Q ss_pred cCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHH------HCCcEEEecCC-----chh
Q psy17074 519 RDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFA------DRDMFCAGRVP-----EED 587 (632)
Q Consensus 519 ~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~------~~~I~~v~~v~-----~~~ 587 (632)
+++++++.++ ++.+.+.|+||||++++|+++++++|. ..+|++|++|+ +++
T Consensus 281 -------i~~~~~l~~~-----------le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~ 342 (600)
T PLN03167 281 -------ITNARDLIGI-----------LEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQY 342 (600)
T ss_pred -------cCCHHHHHHH-----------HHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHH
Confidence 4577777665 567888999999999999999999999 67899999996 889
Q ss_pred HHHHHHHcCCeEee-----cccCCCCCCCeeeeEEEEEE-----EcC
Q psy17074 588 LKRTMKACGGAVMT-----TAHDLNDSVLGTCAVFDERQ-----IGS 624 (632)
Q Consensus 588 L~rIa~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~-----ig~ 624 (632)
|+|||++|||++++ +++++++++||+|++|++++ +|+
T Consensus 343 L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~ 389 (600)
T PLN03167 343 LDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGD 389 (600)
T ss_pred HHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCC
Confidence 99999999999999 68999999999999999988 886
No 71
>KOG0359|consensus
Probab=100.00 E-value=2.1e-42 Score=353.21 Aligned_cols=296 Identities=25% Similarity=0.397 Sum_probs=276.8
Q ss_pred CccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc-
Q psy17074 334 GTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI- 412 (632)
Q Consensus 334 ~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~- 412 (632)
..+......++.-|+.++..|.+.+++.+||+|..||++++.|++.+|.||.+.+++|+++||.+-|+..+|..|++..
T Consensus 9 kAEv~~~~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqdd~tG 88 (520)
T KOG0359|consen 9 KAEVAQHQAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQDDITG 88 (520)
T ss_pred HHHHHhhhcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhhcccC
Confidence 3344455678889999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ---------------------------------------------ccCCchhhHHHHHHHHhhhcCCccccchhhHHHHH
Q psy17074 413 ---------------------------------------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKM 447 (632)
Q Consensus 413 ---------------------------------------------~~~~~~~~~~~L~~va~t~l~sK~~~~~~~~l~~l 447 (632)
++++...+++.|..+++|++.+|....-.+.++++
T Consensus 89 DGttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~~~~L~~va~tsl~Tkv~~~la~~lt~~ 168 (520)
T KOG0359|consen 89 DGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVDRETLKDVARTSLRTKVHAELADVLTPI 168 (520)
T ss_pred CCcceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchhHHHHHHHHHHhhcCcccHHHHhHhHHH
Confidence 12233457889999999999999999999999999
Q ss_pred HHHHHHHhc---ccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhhccCCceE
Q psy17074 448 VVDAVMSLD---DLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEI 524 (632)
Q Consensus 448 i~~A~~~v~---~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~~~~~v 524 (632)
+++|++.+. +.+|+.++.|.+...++..|+.+++|+++|++..||. ||++.+|++||++|.+|||.+++.++.|
T Consensus 169 vv~aVl~i~~~~~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpd---mp~~~e~a~iL~~NvSLEYEK~Einsgf 245 (520)
T KOG0359|consen 169 VVDSVLCIRRQEEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPD---MPRRVEDAYILICNVSLEYEKPEINSGF 245 (520)
T ss_pred HHhhheeeccCCCCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCcc---cccchhceEEEEeeccccccccccccch
Confidence 999999887 3578899999999999999999999999999999995 8999999999999999999999999999
Q ss_pred EecCHHHHHHHHHHHHHHHHHHHHHHHhcCCc----EEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCCeEe
Q psy17074 525 RLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ----VVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVM 600 (632)
Q Consensus 525 ~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~----vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii 600 (632)
.+++++|.+.+...|++++.+.+.+|++.+.. |||.|++|||..++.|.++||+++||.++..||||..+||+..+
T Consensus 246 fYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmERL~lacGG~a~ 325 (520)
T KOG0359|consen 246 FYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMERLVLACGGEAV 325 (520)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHHHHHhhcccee
Confidence 99999999999999999999999999998755 68889999999999999999999999999999999999999999
Q ss_pred ecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 601 TTAHDLNDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 601 ~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
++++|++|++||+|+.|++.++|+++|||+++
T Consensus 326 nsvddLtp~~LG~aglVye~tlGEEkfTFIE~ 357 (520)
T KOG0359|consen 326 NSVDDLTPDYLGYAGLVYEYTLGEEKFTFIEK 357 (520)
T ss_pred cccccCChhhccccceeEEeeccceeeEeeec
Confidence 99999999999999999999999999999985
No 72
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4.6e-40 Score=368.63 Aligned_cols=258 Identities=16% Similarity=0.241 Sum_probs=221.6
Q ss_pred ccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccc----cChHhHHHHHHHHhccccc
Q psy17074 337 NSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDI----VHPAAKTLVDIAKSQDAEI 412 (632)
Q Consensus 337 ~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i----~hP~akll~~~a~~q~~~~ 412 (632)
..+|.+++..|+.|+..|+++|+|||||+||+|||+++.|+++|||||+|||++|++ +||.|+|++++|++||+++
T Consensus 6 ~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~e~ 85 (545)
T PRK12852 6 VKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDLA 85 (545)
T ss_pred hhccHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCcee
Confidence 345678999999999999999999999999999999999999999999999999999 5999999999999999999
Q ss_pred --------------------------ccCC---------------------chhhHHHHHHHHhhhcCCccccchhhHHH
Q psy17074 413 --------------------------QKSD---------------------SGEYRGLLEKCAATALSSKLIHQQKGFFS 445 (632)
Q Consensus 413 --------------------------~~~~---------------------~~~~~~~L~~va~t~l~sK~~~~~~~~l~ 445 (632)
+|.. ...+.+.|.++|+++.++ ++.|+
T Consensus 86 GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~------~~~l~ 159 (545)
T PRK12852 86 GDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANG------DAAIG 159 (545)
T ss_pred cCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCC------hHHHH
Confidence 1100 011234588888877654 58899
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEecCCCc-ccceeEEeEEEecccCCCCCc----CCceeecCceEEEecccchhhhccC
Q psy17074 446 KMVVDAVMSLDDLLPLNMIGIKKVAGGAL-EDSLLVDGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAERD 520 (632)
Q Consensus 446 ~li~~A~~~v~~~~~~~~I~I~ki~Gg~~-~dS~li~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~~ 520 (632)
+++++|+..++.+ +.+.+. .|++. .++++++|+.|+++|.+|+|. .|+..++||+|+++++.+
T Consensus 160 ~li~eA~~~vg~~---g~i~v~--~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i------- 227 (545)
T PRK12852 160 KMIAQAMQKVGNE---GVITVE--ENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKL------- 227 (545)
T ss_pred HHHHHHHHHhccC---Cceeee--cCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCcc-------
Confidence 9999999999743 345555 47775 789999999999999999873 478899999999999864
Q ss_pred CceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHC------CcEEEecCC-----chhHH
Q psy17074 521 NAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADR------DMFCAGRVP-----EEDLK 589 (632)
Q Consensus 521 ~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~------~I~~v~~v~-----~~~L~ 589 (632)
++++ ++.++++.+++.|+||||++++|++.++++|..+ +|++|++++ +++|+
T Consensus 228 ------~~~~-----------~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~ 290 (545)
T PRK12852 228 ------SGLQ-----------AMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLE 290 (545)
T ss_pred ------CCHH-----------HHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHH
Confidence 3433 4566799999999999999999999999999986 799999887 89999
Q ss_pred HHHHHcCCeEee-----cccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 590 RTMKACGGAVMT-----TAHDLNDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 590 rIa~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
|||++|||++++ +++++++++||+|+.|++++ +++++|+|
T Consensus 291 ~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~---~~~~~i~~ 335 (545)
T PRK12852 291 DIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK---ENTTIVNG 335 (545)
T ss_pred HHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc---cEEEEEeC
Confidence 999999999999 79999999999999999987 67888764
No 73
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=1.5e-41 Score=380.98 Aligned_cols=239 Identities=14% Similarity=0.190 Sum_probs=215.9
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCC------ceEEEe-----CCchhHHHHHHHhCCEEeccc------c
Q psy17074 60 ILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRD------MFCAGR-----VPEEDLKRTMKACGGAVMTTA------H 122 (632)
Q Consensus 60 ~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~------I~~~~~-----v~~~~l~~ia~~tGa~ii~~l------~ 122 (632)
.+.++++++.+.|+||+|++++|+++|+++|..|+ |.++++ +++++|+|||.+|||+++++. +
T Consensus 243 ~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~ 322 (555)
T PTZ00114 243 SILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLD 322 (555)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcc
Confidence 47788999999999999999999999999999997 777855 778999999999999999987 7
Q ss_pred CCCCCCCCCcceEEEEEEcceEEEEEeccC-----------------------------------CCceEEEEecCCChh
Q psy17074 123 DLNDSVLGTCAVFDERQIGSERFNVFSGCK-----------------------------------NARTCTIIVRGGAEQ 167 (632)
Q Consensus 123 ~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~-----------------------------------~~~~~TI~lrG~t~~ 167 (632)
++++++||+|++|++.+ +++++++++. ++++|||+|||+|+.
T Consensus 323 ~~~~~~LG~a~~v~~~~---~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~ 399 (555)
T PTZ00114 323 DFDPSMLGSAKKVTVTK---DETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEV 399 (555)
T ss_pred cCCHHHcCCCceEEEEe---ceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHH
Confidence 88888999999997665 6677777765 678999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhcc---CCCccccCCCCCcceeeeccccccccccccc-
Q psy17074 168 FLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSG---LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK- 243 (632)
Q Consensus 168 ~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~---~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La- 243 (632)
+++|++|+++|||+++++++++| +|||||++|+++|..|++++. .+++ +++++.+| ++||+.||++|+
T Consensus 400 ~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~~~~------~~~~i~~~-a~AL~~ip~~La~ 471 (555)
T PTZ00114 400 EVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLRASKLLDKLEEDNELTPD------QRTGVKIV-RNALRLPTKQIAE 471 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHHHHHHHHHHhhccCCchH------HHHHHHHH-HHHHHHHHHHHHH
Confidence 99999999999999999999998 999999999999999998863 2344 45677888 999999999998
Q ss_pred CCCCchhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074 244 NPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY 312 (632)
Q Consensus 244 NaG~~~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~ 312 (632)
|||+|+.+++.+|++ ..+..+|||. .+|+++||.+.|||||+ +++|++|+++|+++|++|++|...
T Consensus 472 NaG~d~~~v~~~l~~-~~~~~~G~d~--~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~ 540 (555)
T PTZ00114 472 NAGVEGAVVVEKILE-KKDPSFGYDA--QTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAAIVDL 540 (555)
T ss_pred HcCCCHHHHHHHHHh-cCCCCEeEeC--CCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhHHHHHHhC
Confidence 999999999999976 2344589999 99999999999999999 899999999999999999999874
No 74
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=2.8e-41 Score=376.75 Aligned_cols=237 Identities=14% Similarity=0.178 Sum_probs=213.7
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHC------CceEEEeC-----CchhHHHHHHHhCCEEec-----cccC
Q psy17074 60 ILYEKLDKIHASGAQVVLSKLPIGDVATQYFADR------DMFCAGRV-----PEEDLKRTMKACGGAVMT-----TAHD 123 (632)
Q Consensus 60 ~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~------~I~~~~~v-----~~~~l~~ia~~tGa~ii~-----~l~~ 123 (632)
.+.++++++.+.|+||||++++|++.|+++|..| ||++++++ ++++|+|||++|||++++ ++++
T Consensus 230 ~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~ 309 (524)
T TIGR02348 230 DLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEE 309 (524)
T ss_pred HHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCc
Confidence 3688899999999999999999999999999997 78888766 448999999999999999 8999
Q ss_pred CCCCCCCCcceEEEEEEcceEEEEEeccCCCc-----------------------------------eEEEEecCCChhh
Q psy17074 124 LNDSVLGTCAVFDERQIGSERFNVFSGCKNAR-----------------------------------TCTIIVRGGAEQF 168 (632)
Q Consensus 124 l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~-----------------------------------~~TI~lrG~t~~~ 168 (632)
+++++||+|+.|++. .++|+++++|.+++ ++||+|||+|+.+
T Consensus 310 ~~~~~LG~~~~v~~~---~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~ 386 (524)
T TIGR02348 310 VTLDDLGKAKKVTVD---KDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETE 386 (524)
T ss_pred CCHHHCCCceEEEEe---ecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHH
Confidence 999999999999654 47899998876543 7899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhccCCCccccCCCCCcceeeeccccccccccccc-CCCC
Q psy17074 169 LEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKI 247 (632)
Q Consensus 169 l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~ 247 (632)
++|++|+++||++++|+++++| +|||||++|+++|.+|++.....+. +++++++| ++||+.||++|+ |||+
T Consensus 387 l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s~~L~~~~~~~~~------~~~~~~~~-a~AL~~ip~~La~NaG~ 458 (524)
T TIGR02348 387 MKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRAAAALEGLKGDNED------EAIGIDIV-KRALEAPLRQIAENAGK 458 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHHhccCChH------HHHHHHHH-HHHHHHHHHHHHHhCCC
Confidence 9999999999999999999998 9999999999999999983233444 45677888 999999999998 9999
Q ss_pred chhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074 248 ALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ 311 (632)
Q Consensus 248 ~~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~ 311 (632)
|+.+++++|++. . ..+|||. .+|+++||.+.|||||+ .++|++|+++|+++|++|++|.+
T Consensus 459 d~~~v~~~l~~~-~-~~~G~d~--~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~ii~~ 521 (524)
T TIGR02348 459 DGAVVAEKVKES-K-GNFGFNA--ATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVAD 521 (524)
T ss_pred CHHHHHHHHHhc-C-CCeeEeC--cCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhc
Confidence 999999999865 2 2489999 99999999999999999 89999999999999999999964
No 75
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=1.3e-39 Score=363.88 Aligned_cols=259 Identities=17% Similarity=0.218 Sum_probs=217.4
Q ss_pred ccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhH----HHHHHHHhccccc
Q psy17074 337 NSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAK----TLVDIAKSQDAEI 412 (632)
Q Consensus 337 ~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~ak----ll~~~a~~q~~~~ 412 (632)
..++.++|...++||..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+++ |++++|.+|++++
T Consensus 5 ~~~~~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e~ 84 (529)
T CHL00093 5 ILYQDNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDVA 84 (529)
T ss_pred eecCHHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCcee
Confidence 346788999999999999999999999999999999999999999999999999999999985 8888999999888
Q ss_pred --------------------------ccCC---------------------chhhHHHHHHHHhhhcCCccccchhhHHH
Q psy17074 413 --------------------------QKSD---------------------SGEYRGLLEKCAATALSSKLIHQQKGFFS 445 (632)
Q Consensus 413 --------------------------~~~~---------------------~~~~~~~L~~va~t~l~sK~~~~~~~~l~ 445 (632)
+|.. ...+.+.|.++|+++++ +++.|+
T Consensus 85 GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts~~------~~~~l~ 158 (529)
T CHL00093 85 GDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDIQAITQVASISAG------NDEEVG 158 (529)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc------ChHHHH
Confidence 0100 01245678899998754 678999
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCc----eeecCceEEEecccchhhhccCC
Q psy17074 446 KMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQP----KTYKNPKIALLNIELELKAERDN 521 (632)
Q Consensus 446 ~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~----~~~~n~kIll~~~~Le~~~~~~~ 521 (632)
+|+++|+..++++ +.|.+. ..+++..++++++|++|+++|.||+|..++ ..++||+|++++++|++.+
T Consensus 159 ~lv~eAv~~vg~~---g~i~~~-~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~---- 230 (529)
T CHL00093 159 SMIADAIEKVGRE---GVISLE-EGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQ---- 230 (529)
T ss_pred HHHHHHHHHhccC---Cceeec-CCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchH----
Confidence 9999999999743 334332 122345678999999999999999986544 4699999999999998432
Q ss_pred ceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHH--HH----CCcEEEecCCc-----hhHHH
Q psy17074 522 AEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYF--AD----RDMFCAGRVPE-----EDLKR 590 (632)
Q Consensus 522 ~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L--~~----~~I~~v~~v~~-----~~L~r 590 (632)
..+.++++.+.+.|++|||++++|++.++++| .+ +||++|++|++ ++|+|
T Consensus 231 -------------------~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ 291 (529)
T CHL00093 231 -------------------QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLED 291 (529)
T ss_pred -------------------HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHH
Confidence 23667799999999999999999999777766 66 48999999954 78999
Q ss_pred HHHHcCCeEee-----cccCCCCCCCeeeeEEEEEEEcCeEEEEec
Q psy17074 591 TMKACGGAVMT-----TAHDLNDSVLGTCAVFDERQIGSERDTLNR 631 (632)
Q Consensus 591 Ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~ 631 (632)
||++|||++++ +++++++++||+|+.|+++. +++++|+
T Consensus 292 ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~~~ 334 (529)
T CHL00093 292 IAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK---DSTTIIA 334 (529)
T ss_pred HHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec---CEEEEEe
Confidence 99999999999 79999999999999999875 7888875
No 76
>KOG0362|consensus
Probab=100.00 E-value=3.7e-40 Score=342.59 Aligned_cols=275 Identities=18% Similarity=0.320 Sum_probs=253.3
Q ss_pred cccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhC
Q psy17074 35 KKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACG 114 (632)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tG 114 (632)
.-++++|+.+++++++..|.+.|+..+..+++.|...|+++|++.+.|++++++||.+++|++++-.++.||.|+|+..|
T Consensus 245 ~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk~eLrrlcrtvG 324 (537)
T KOG0362|consen 245 QTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSKFDLRRLCRTVG 324 (537)
T ss_pred cccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccHhhHHHHHHHcC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEeccccCCCCCCCCCcceEEEEEEcceEEEEEec-cCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEE
Q psy17074 115 GAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSG-CKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVV 193 (632)
Q Consensus 115 a~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~-~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vv 193 (632)
|++.+++..+.+..+|+|++|+..++|+..+++|.. +..++++|++|||+|...+|+.||+++|++++.+..+++++++
T Consensus 325 A~~l~rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLl 404 (537)
T KOG0362|consen 325 ATALPRLFPPAPEELGYCDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLL 404 (537)
T ss_pred CccchhccCCCCccccccceeeeeecCCceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccc
Confidence 999999999999999999999999999999988864 4467899999999999999999999999999999999999999
Q ss_pred ecCChhHHHHHHHHhhhccCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCCCc-ccccccc
Q psy17074 194 AGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDNAE-IRLDSVE 271 (632)
Q Consensus 194 pGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~~~-~G~d~~~ 271 (632)
||+|++|++|+++|.+++.. ..|. .++++..| ++||+.+|++|+ |||+++.+++++++..|...+ +|+|-
T Consensus 405 pGagatEieLak~i~~~g~~----~~Gl-~q~Aik~f-a~Ale~~PktlaEnagl~~~evia~ly~~h~~g~~~g~di-- 476 (537)
T KOG0362|consen 405 PGAGATEIELAKQISSRGAT----LPGL-KQLAIKKF-AEALEVLPKTLAENAGLAVTEVIAKLYAVHQGGKNLGMDI-- 476 (537)
T ss_pred cCCchhHHHHHHHHHHhccc----CCCc-chhHHHHH-HHHhccccHhHHHhcCCcHHHHHHHHHHhhcCCCcceeee--
Confidence 99999999999999998841 3454 78899998 999999999998 999999999999999887332 56666
Q ss_pred ccc-hhHhHHHHhHHHHH---HHHHHhhchhheecccccccccccccccc
Q psy17074 272 EYQ-KVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQYFADRV 317 (632)
Q Consensus 272 ~~~-~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~~~~k~ 317 (632)
+-+ ...|+.++||||.+ +++++.|+++|+++|++|+||....+..|
T Consensus 477 ~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak~aggp 526 (537)
T KOG0362|consen 477 EAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAKKAGGP 526 (537)
T ss_pred eccccccChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEecccCCC
Confidence 334 69999999999999 88999999999999999999998876433
No 77
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=2.8e-39 Score=361.25 Aligned_cols=258 Identities=16% Similarity=0.241 Sum_probs=221.4
Q ss_pred ccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhcccc----ChHhHHHHHHHHhccccc
Q psy17074 337 NSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIV----HPAAKTLVDIAKSQDAEI 412 (632)
Q Consensus 337 ~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~----hP~akll~~~a~~q~~~~ 412 (632)
..+|.+++..|++|+..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++ ||.|+|++++|++||+++
T Consensus 6 ~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~e~ 85 (546)
T PRK14104 6 VKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADAA 85 (546)
T ss_pred ecchHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhcccc
Confidence 4467899999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred --------------------------ccCC---------------------chhhHHHHHHHHhhhcCCccccchhhHHH
Q psy17074 413 --------------------------QKSD---------------------SGEYRGLLEKCAATALSSKLIHQQKGFFS 445 (632)
Q Consensus 413 --------------------------~~~~---------------------~~~~~~~L~~va~t~l~sK~~~~~~~~l~ 445 (632)
+|.. ...+.+.|.++|+++.+++ +.|+
T Consensus 86 GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d------~~i~ 159 (546)
T PRK14104 86 GDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGD------AEIG 159 (546)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCc------hHHH
Confidence 1110 0112356888888876554 7799
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEecCCCc-ccceeEEeEEEecccCCCCCc----CCceeecCceEEEecccchhhhccC
Q psy17074 446 KMVVDAVMSLDDLLPLNMIGIKKVAGGAL-EDSLLVDGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAERD 520 (632)
Q Consensus 446 ~li~~A~~~v~~~~~~~~I~I~ki~Gg~~-~dS~li~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~~ 520 (632)
+++++|+..++.+ +.|.+... ++. .++++++|++|+++|.||+|. .|+..++||+|++++..
T Consensus 160 ~lv~~Av~~vg~~---g~i~v~~~--~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~-------- 226 (546)
T PRK14104 160 KFLADAMKKVGNE---GVITVEEA--KSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKK-------- 226 (546)
T ss_pred HHHHHHHHHhccC---CceeeEec--ccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhh--------
Confidence 9999999999753 45666543 445 589999999999999999883 46788999999999955
Q ss_pred CceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHH------CCcEEEecCC-----chhHH
Q psy17074 521 NAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD------RDMFCAGRVP-----EEDLK 589 (632)
Q Consensus 521 ~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~------~~I~~v~~v~-----~~~L~ 589 (632)
++++++ +.++++.+.+.|+||||++++|+++|+++|.. .+|++|++|+ +++|+
T Consensus 227 -----i~~~~~-----------i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~ 290 (546)
T PRK14104 227 -----LSSLNE-----------LLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQ 290 (546)
T ss_pred -----hcCHHH-----------HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHH
Confidence 344444 45679999999999999999999999999995 5789999997 79999
Q ss_pred HHHHHcCCeEeec-----ccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 590 RTMKACGGAVMTT-----AHDLNDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 590 rIa~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
|||++|||+++++ ++++++++||+|++|++ +++++++|.|
T Consensus 291 ~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g 335 (546)
T PRK14104 291 DIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMI---DKENTTIVNG 335 (546)
T ss_pred HHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEE---cCCEEEEEeC
Confidence 9999999999999 99999999999999985 7889999864
No 78
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=2.4e-40 Score=369.70 Aligned_cols=239 Identities=15% Similarity=0.183 Sum_probs=212.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCcChhHHHHH--HH----CCceEEEeC-----CchhHHHHHHHhCCEEec-----ccc
Q psy17074 59 KILYEKLDKIHASGAQVVLSKLPIGDVATQYF--AD----RDMFCAGRV-----PEEDLKRTMKACGGAVMT-----TAH 122 (632)
Q Consensus 59 ~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l--~~----~~I~~~~~v-----~~~~l~~ia~~tGa~ii~-----~l~ 122 (632)
..+.+.++++.+.|+||+|++++|++.++++| .+ +||.+++++ ++++|+|||.+|||++++ +++
T Consensus 231 ~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~ 310 (529)
T CHL00093 231 QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLE 310 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcC
Confidence 56889999999999999999999999888877 65 489999988 458899999999999999 799
Q ss_pred CCCCCCCCCcceEEEEEEcceEEEEEec---------cCC-------------------------CceEEEEecCCChhh
Q psy17074 123 DLNDSVLGTCAVFDERQIGSERFNVFSG---------CKN-------------------------ARTCTIIVRGGAEQF 168 (632)
Q Consensus 123 ~l~~~~lG~~~~v~~~~i~~~~~~~~~~---------~~~-------------------------~~~~TI~lrG~t~~~ 168 (632)
++++++||+|+.|++. .+++++|++ |.. +.++||+|||+|+.+
T Consensus 311 ~~~~~~LG~~~~v~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~ 387 (529)
T CHL00093 311 TIQLDLLGQARRIIVT---KDSTTIIADGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETE 387 (529)
T ss_pred CCCHHHCCcceEEEEe---cCEEEEEecCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHH
Confidence 9999999999999665 478888874 221 248899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhcc--CCCccccCCCCCcceeeeccccccccccccc-CC
Q psy17074 169 LEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSG--LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NP 245 (632)
Q Consensus 169 l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~--~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-Na 245 (632)
++|.+|+++||++++++++++| +|||||++|+++|.+|++++. .+++ +++++++| ++||+.||++|+ ||
T Consensus 388 l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~g~------~~~~i~~~-a~AL~~ip~~La~Na 459 (529)
T CHL00093 388 MKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLSENLKTWAKNNLKED------ELIGALIV-ARAILAPLKRIAENA 459 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHHhccCCChH------HHHHHHHH-HHHHHHHHHHHHHhc
Confidence 9999999999999999999998 999999999999999999863 3444 45577888 999999999998 99
Q ss_pred CCchhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074 246 KIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY 312 (632)
Q Consensus 246 G~~~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~ 312 (632)
|+|+.+++.+++.. +..+|||. .+|+|+||.+.|||||+ .++|++|+++|+++||+|++|.+.
T Consensus 460 G~d~~~v~~~l~~~--~~~~G~d~--~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~ii~~~ 525 (529)
T CHL00093 460 GKNGSVIIEKVQEQ--DFEIGYNA--ANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTECIIVDK 525 (529)
T ss_pred CCCHHHHHHHHHcc--CCCEeEEC--CCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999764 33589999 99999999999999999 899999999999999999999864
No 79
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=2.8e-40 Score=371.41 Aligned_cols=244 Identities=16% Similarity=0.156 Sum_probs=209.2
Q ss_pred HHHHHHHHHHHcCCcEEEEecCcChhHHHHHH------HCCceEEEeCC-----chhHHHHHHHhCCEEec-----cccC
Q psy17074 60 ILYEKLDKIHASGAQVVLSKLPIGDVATQYFA------DRDMFCAGRVP-----EEDLKRTMKACGGAVMT-----TAHD 123 (632)
Q Consensus 60 ~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~------~~~I~~~~~v~-----~~~l~~ia~~tGa~ii~-----~l~~ 123 (632)
.+.+.++++.+.|+||||++++|+++++++|. ..++.++++.+ +++|+|||.+|||++++ ++++
T Consensus 286 ~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~ 365 (600)
T PLN03167 286 DLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDK 365 (600)
T ss_pred HHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCccc
Confidence 45556678889999999999999999999999 66788888774 88999999999999999 7889
Q ss_pred CCCCCCCCcceEEEEE-----Ecc--------eEEEEEeccC-------------------CCceEEEEecCCChhhHHH
Q psy17074 124 LNDSVLGTCAVFDERQ-----IGS--------ERFNVFSGCK-------------------NARTCTIIVRGGAEQFLEE 171 (632)
Q Consensus 124 l~~~~lG~~~~v~~~~-----i~~--------~~~~~~~~~~-------------------~~~~~TI~lrG~t~~~l~E 171 (632)
+++++||+|++|++.+ +++ +++++|+++. .+.+++|+|||+|+.+++|
T Consensus 366 ~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E 445 (600)
T PLN03167 366 VGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKE 445 (600)
T ss_pred CCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHH
Confidence 9999999999998876 554 3666666543 1234455599999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCch
Q psy17074 172 TERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIAL 249 (632)
Q Consensus 172 ~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~ 249 (632)
+||+++|||+++|+++++| +|||||++|++++.+|++++. ..+.++ ..++.++ ++||+.||++|+ |||+|+
T Consensus 446 ~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq-----~~g~~~~-~~Al~~p~r~La~NAG~d~ 518 (600)
T PLN03167 446 KKLRVEDALNATKAAVEEG-IVVGGGCTLLRLASKVDAIKDTLENDEQ-----KVGADIV-KRALSYPLKLIAKNAGVNG 518 (600)
T ss_pred HHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHhcCCChhH-----HHHHHHH-HHHHhcchhhhhhcCCCCH
Confidence 9999999999999999999 999999999999999998863 233322 1124554 999999999998 999999
Q ss_pred hhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccccc
Q psy17074 250 LNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQYF 313 (632)
Q Consensus 250 ~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~~ 313 (632)
.+++.+|+..+ +..+|||+ .+|+|+||.++|||||+ +++|++|+++|+++||+|++|....
T Consensus 519 ~~vv~~L~~~~-~~~~G~d~--~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~iI~~~~ 582 (600)
T PLN03167 519 SVVSEKVLSND-NPKFGYNA--ATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIK 582 (600)
T ss_pred HHHHHHHHhcC-CCCEeEeC--CCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999997544 45689999 99999999999999999 9999999999999999999999863
No 80
>KOG0360|consensus
Probab=100.00 E-value=2.6e-40 Score=341.43 Aligned_cols=267 Identities=28% Similarity=0.429 Sum_probs=246.3
Q ss_pred ccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCC
Q psy17074 36 KKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGG 115 (632)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa 115 (632)
-++.-.+.+.||++++++.+.|....++.+++|+..|+|||+++++|||.+++||..+|+++++|+.+++|++||++||+
T Consensus 249 m~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iakatGa 328 (545)
T KOG0360|consen 249 MKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAKATGA 328 (545)
T ss_pred ccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHHhhCC
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccc------CCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhC
Q psy17074 116 AVMTTAH------DLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRN 189 (632)
Q Consensus 116 ~ii~~l~------~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~ 189 (632)
++++++. .+.++.+|+|+.|.+.+++++.++++.+.+.. .|+|+|||+++..+||++|++|||||+++..+++
T Consensus 329 t~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka~-~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes 407 (545)
T KOG0360|consen 329 TLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKAT-SASIILRGANDFMLDEMERSLHDALCVLKRTLES 407 (545)
T ss_pred eeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCccc-eeeEEEecCCcccHhhhccchhhHHHHHHHHhcc
Confidence 9999987 55678899999999999999999999997765 9999999999999999999999999999999999
Q ss_pred CeEEecCChhHHHHHHHHhhhccC-CCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC----CC
Q psy17074 190 HAVVAGGGAIEMELSKALRDYSGL-GDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD----NA 263 (632)
Q Consensus 190 ~~vvpGGGa~e~~ls~~L~~~~~~-~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~----~~ 263 (632)
+++||||||+|.+|+-+|++|+.. .++ +++++..| +.||.++|++|+ ||+.|+.+++.+++..|. ++
T Consensus 408 ~~vvpGGG~vE~aLs~yle~~a~s~~sr------E~laiaef-a~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p 480 (545)
T KOG0360|consen 408 KSVVPGGGAVETALSIYLENFATSVGSR------EQLAIAEF-AAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNP 480 (545)
T ss_pred CccccCccHHHHHHHHHHHhhcccCccH------HHHHHHHH-HHHHhcchHHHhhhhccccccccccccCCchhhccCC
Confidence 999999999999999999999943 344 45567777 889999999998 999999999999988764 11
Q ss_pred ------ccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074 264 ------EIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY 312 (632)
Q Consensus 264 ------~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~ 312 (632)
.+|+|. .+|.+.|..+.|+++|. ...|+.|++.+.++||+|+++.-.
T Consensus 481 ~~~~~k~~GldL--~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~l~ 536 (545)
T KOG0360|consen 481 WRLLLKQYGLDL--INGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIKLL 536 (545)
T ss_pred ccccchhhCccc--cccEeecceeeeeeccceeehhhhHHHHHhhhhhcchhhhhhcC
Confidence 159999 99999999999999999 889999999999999999988543
No 81
>KOG0359|consensus
Probab=100.00 E-value=1.9e-39 Score=331.56 Aligned_cols=271 Identities=21% Similarity=0.351 Sum_probs=254.7
Q ss_pred hhccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCc----EEEEecCcChhHHHHHHHCCceEEEeCCchhHH
Q psy17074 32 KKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQ----VVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK 107 (632)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~----lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~ 107 (632)
+||+..-+.-+.+++.+|.+.+...|++++.+.+.+|++++.. |||.|++|||..++.|.++||++++|.++..||
T Consensus 235 EYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmE 314 (520)
T KOG0359|consen 235 EYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNME 314 (520)
T ss_pred cccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHH
Confidence 5777788888999999999999999999999999999999877 689999999999999999999999999999999
Q ss_pred HHHHHhCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHH
Q psy17074 108 RTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTI 187 (632)
Q Consensus 108 ~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~ 187 (632)
|+..+|||..++++++++++.||+|+.||+.++|+++|+|+++|.++++|||+++||+.+.+.++|++++|+|.++++++
T Consensus 315 RL~lacGG~a~nsvddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p~S~TiLikgpnkht~tQikdairdglrav~ntl 394 (520)
T KOG0359|consen 315 RLVLACGGEAVNSVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNPSSVTILIKGPNKHTITQIKDAIRDGLRAVKNTL 394 (520)
T ss_pred HHHHhhccceecccccCChhhccccceeEEeeccceeeEeeecCCCCcceEEEEeCCccchHHHHHHHHhhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeEEecCChhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCCCcc
Q psy17074 188 RNHAVVAGGGAIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDNAEI 265 (632)
Q Consensus 188 ~~~~vvpGGGa~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~~~~ 265 (632)
+|+.++||+|++|.+++.+|+... +..++.++ ++++| ++||..+|++|+ |+|+|+.+.+.+|.+.|.....
T Consensus 395 ~d~~~i~Gaga~~va~~~~lr~~k~~vkgra~~------g~~af-a~all~ipk~La~nsg~D~qe~l~~l~~e~~~~~~ 467 (520)
T KOG0359|consen 395 EDKCGIPGAGAFEVALGRHLRESKKSVKGRAYL------GVKAF-ANALLVIPKTLAKNSGLDEQETLVSLKKEHEVTLR 467 (520)
T ss_pred hhcccccCchHHHHHHHHHHHHhhhccCchhhh------hHHHH-HhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhhhc
Confidence 999999999999999999999765 44566444 55888 999999999998 9999999999999888876667
Q ss_pred ccccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074 266 RLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ 311 (632)
Q Consensus 266 G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~ 311 (632)
|+|. .+|+=++...+||||.+ ++.|.+++-+|+-+|-.|+|+..
T Consensus 468 g~dl--~~g~~~~~~~~gi~Dny~v~~~~l~s~~via~nlLlvDEi~rA 514 (520)
T KOG0359|consen 468 GLDL--FRGEECDPSRKGIYDNYSVKKQLLRSEAVIATNLLLVDEIIRA 514 (520)
T ss_pred cccc--ccCCccchhhccccchHHHHHHHhhhhHHHHHHHHHHHHHHHc
Confidence 9999 99999999999999999 88999999999999999998754
No 82
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.98 E-value=2e-31 Score=272.26 Aligned_cols=185 Identities=24% Similarity=0.336 Sum_probs=172.2
Q ss_pred cchhhHHHHHHHHHHHHhc------ccCCCC-cEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEec
Q psy17074 438 HQQKGFFSKMVVDAVMSLD------DLLPLN-MIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLN 510 (632)
Q Consensus 438 ~~~~~~l~~li~~A~~~v~------~~~~~~-~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~ 510 (632)
..|.++|++++++|+..+. +.+|+. +|+|.+++||++.||++++|++|++++.++ +||++++||||++++
T Consensus 17 ~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~---~m~~~i~n~kIlll~ 93 (261)
T cd03334 17 ESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHK---RMPSKIKNPRILLLQ 93 (261)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCc---cCCcccCCCcEEEEe
Confidence 5689999999999999985 136665 599999999999999999999999999887 489999999999999
Q ss_pred ccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHH
Q psy17074 511 IELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKR 590 (632)
Q Consensus 511 ~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~r 590 (632)
|+|++++++. ++++++++.++|++++++++++|++.|++||+|+++|++.+++||.++||++++++++.+|+|
T Consensus 94 ~~Le~~~~~~-------~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~r 166 (261)
T cd03334 94 GPLEYQRVEN-------KLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLER 166 (261)
T ss_pred eeeccccccC-------CHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHH
Confidence 9999988764 468899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEeecc-cCCCCCCCeeeeEEEEEEEcC-----eEEEEecC
Q psy17074 591 TMKACGGAVMTTA-HDLNDSVLGTCAVFDERQIGS-----ERDTLNRE 632 (632)
Q Consensus 591 Ia~~tGa~ii~~l-~~l~~~~lG~~~~v~~~~ig~-----~~~~~~~~ 632 (632)
||++|||++++++ +++++++||+|++|+++++|+ ++|+||+|
T Consensus 167 Ia~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~ 214 (261)
T cd03334 167 ISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEG 214 (261)
T ss_pred HHHHhCCEEecChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEec
Confidence 9999999999994 589999999999999999996 69999975
No 83
>KOG0356|consensus
Probab=99.98 E-value=9.8e-33 Score=291.74 Aligned_cols=242 Identities=15% Similarity=0.131 Sum_probs=215.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCC-----------ceEEEeCCchhHHHHHHHhCCEEec------c
Q psy17074 58 WKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRD-----------MFCAGRVPEEDLKRTMKACGGAVMT------T 120 (632)
Q Consensus 58 ~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~-----------I~~~~~v~~~~l~~ia~~tGa~ii~------~ 120 (632)
-+.|.+.++.-.....||++++++|+.+||..|..|+ .|+|++.++..+.|+|.+|||+++. +
T Consensus 243 v~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~ 322 (550)
T KOG0356|consen 243 VQSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLN 322 (550)
T ss_pred HHHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcc
Confidence 3456777888889999999999999999999999984 4889999999999999999999986 4
Q ss_pred ccCCCCCCCCCcceEEEEEEcceEEEEEecc-----------------------------------CCCceEEEEecCCC
Q psy17074 121 AHDLNDSVLGTCAVFDERQIGSERFNVFSGC-----------------------------------KNARTCTIIVRGGA 165 (632)
Q Consensus 121 l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~-----------------------------------~~~~~~TI~lrG~t 165 (632)
++...+.+||+|+.+ .+..+.++++.+. ..+++++|.++|.|
T Consensus 323 le~~~~~dLG~~~ev---vvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~s 399 (550)
T KOG0356|consen 323 LEDAKLEDLGEVGEV---VVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHS 399 (550)
T ss_pred cccCchhhcCcceeE---EEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcc
Confidence 667788999999999 8888888888762 22579999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhccC-CCccccCCCCCcceeeeccccccccccccc-
Q psy17074 166 EQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGL-GDKVRTGHPSDNSFHAISPDGFEMQPKTYK- 243 (632)
Q Consensus 166 ~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~~-~~~~~~g~~~~~~~~~~~a~ALe~ip~~La- 243 (632)
+.+++|++++++||||++++++++| +|||||+++++++..|.++... +.+++. +++++ .+||..|.++|+
T Consensus 400 e~Ev~ekk~rv~dalnat~aaveeG-ivpGGG~all~~~~~l~~lk~~~~~~~k~------G~eiv-~~Al~~P~~~Iak 471 (550)
T KOG0356|consen 400 EVEVNEKKDRVEDALNATRAAVEEG-IVPGGGTALLRAIPVLDELKATNNFDQKV------GVEIV-KKALRLPAQTIAK 471 (550)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHHhhhhhhhcccccchHhhh------hHHHH-HHHHhhhHHHHHH
Confidence 9999999999999999999999999 9999999999999999988743 333333 44676 999999999998
Q ss_pred CCCCchhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccccccc
Q psy17074 244 NPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQYFADR 316 (632)
Q Consensus 244 NaG~~~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~~~~k 316 (632)
|||+++..++.|++. . .+|||+ ..++|+||+++||+||. |++|.+|+++|++++|++++|++.-...
T Consensus 472 NAGvdg~~vv~Kv~~--~--~~gyda--~~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~tte~vvteipk~~ 541 (550)
T KOG0356|consen 472 NAGVDGSVVVEKVLN--D--DYGYDA--AKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTEIPKEE 541 (550)
T ss_pred hcCCchHHHHHHHHh--h--hhhhhh--hcccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhhheeEEEeccccc
Confidence 999999999999983 2 589999 99999999999999999 9999999999999999999999984443
No 84
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.96 E-value=4.4e-28 Score=240.64 Aligned_cols=166 Identities=39% Similarity=0.588 Sum_probs=157.8
Q ss_pred HHHHHHHhhhcCCccccchhhHHHHHHHHHHHHhcc---cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCc
Q psy17074 422 GLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD---LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQP 498 (632)
Q Consensus 422 ~~L~~va~t~l~sK~~~~~~~~l~~li~~A~~~v~~---~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~ 498 (632)
+.|.++|+|+++||+ +.|.+.|++++++|+..++. .++.++|+|++++||++.||++++|++|++++.|++ ||
T Consensus 2 ~~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~---m~ 77 (209)
T cd03333 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPY---MP 77 (209)
T ss_pred hHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhhceeEeeEEEeccccCCC---CC
Confidence 468999999999999 99999999999999999974 356789999999999999999999999999999985 79
Q ss_pred eeecCceEEEecccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcE
Q psy17074 499 KTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMF 578 (632)
Q Consensus 499 ~~~~n~kIll~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~ 578 (632)
+.++||+|++++++|++ ||+++++|++.+++||.++||+
T Consensus 78 ~~~~n~~Ill~~~~le~-----------------------------------------vii~~~~I~~~al~~l~~~~I~ 116 (209)
T cd03333 78 KRLENAKILLLDCPLEY-----------------------------------------VVIAEKGIDDLALHYLAKAGIM 116 (209)
T ss_pred eEcCCCcEEEEeCCeeE-----------------------------------------EEEecCcccHHHHHHHHHCCCE
Confidence 99999999999999985 9999999999999999999999
Q ss_pred EEecCCchhHHHHHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074 579 CAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE 632 (632)
Q Consensus 579 ~v~~v~~~~L~rIa~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 632 (632)
+++++++.+|+|||++|||++++++++++++.||+|++|+++++|+++|++|++
T Consensus 117 ~v~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~ 170 (209)
T cd03333 117 AVRRVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGEEKLTFIEG 170 (209)
T ss_pred EEEeCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECCeEEEEEEc
Confidence 999999999999999999999999999999999999999999999999999974
No 85
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.95 E-value=1.1e-26 Score=237.36 Aligned_cols=149 Identities=20% Similarity=0.327 Sum_probs=142.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEEeccc-cC
Q psy17074 45 EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTA-HD 123 (632)
Q Consensus 45 ~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ii~~l-~~ 123 (632)
+++++++.++++|++++..++++|++.|+||||++++|++.|++||.++||++++++++.+|+|||++|||++++++ ++
T Consensus 103 ~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~rIa~~tGa~ii~~i~~~ 182 (261)
T cd03334 103 NKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLERISRCTGADIISSMDDL 182 (261)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHHHHHHhCCEEecChhhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999995 58
Q ss_pred CCCCCCCCcceEEEEEEcc-----eEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEE
Q psy17074 124 LNDSVLGTCAVFDERQIGS-----ERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVV 193 (632)
Q Consensus 124 l~~~~lG~~~~v~~~~i~~-----~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vv 193 (632)
++++.||+|++|+++++++ +++++|++|..+++|||+|||+|+++++|+||+++||+++++++..+++++
T Consensus 183 ~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~~~~ 257 (261)
T cd03334 183 LTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKELGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLETSFL 257 (261)
T ss_pred cCcccCcCcceEEEEEecCcCCCceeEEEEecCCCCceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 8999999999999999996 699999999999999999999999999999999999999999999988543
No 86
>KOG0356|consensus
Probab=99.94 E-value=5.2e-27 Score=248.45 Aligned_cols=252 Identities=20% Similarity=0.264 Sum_probs=210.7
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChH----hHHHHHHHHhccc
Q psy17074 335 TENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPA----AKTLVDIAKSQDA 410 (632)
Q Consensus 335 ~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~----akll~~~a~~q~~ 410 (632)
.+..+|.++|...++|+..|||+|.+|+||+|||++|.+.+|.|.|||||+|+++++++.++. |+++++++.++|+
T Consensus 17 k~i~fg~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN~ 96 (550)
T KOG0356|consen 17 KDIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTNE 96 (550)
T ss_pred cccccCHHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhccC
Confidence 355688999999999999999999999999999999999999999999999999999999987 8999999999999
Q ss_pred cc--------------------------ccCC---------------------chhhHHHHHHHHhhhcCCccccchhhH
Q psy17074 411 EI--------------------------QKSD---------------------SGEYRGLLEKCAATALSSKLIHQQKGF 443 (632)
Q Consensus 411 ~~--------------------------~~~~---------------------~~~~~~~L~~va~t~l~sK~~~~~~~~ 443 (632)
.+ .|+. .....+++.++|.++ ++.+..
T Consensus 97 ~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiS------AngD~~ 170 (550)
T KOG0356|consen 97 EAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATIS------ANGDKE 170 (550)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhh------cCCcHH
Confidence 98 1111 012356677777766 445688
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEecCCCccc-ceeEEeEEEecccCCCCCcC----CceeecCceEEEecccchhhhc
Q psy17074 444 FSKMVVDAVMSLDDLLPLNMIGIKKVAGGALED-SLLVDGVSFKKTFAYAGFEM----QPKTYKNPKIALLNIELELKAE 518 (632)
Q Consensus 444 l~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~d-S~li~Giv~~~~~~~~~~~~----m~~~~~n~kIll~~~~Le~~~~ 518 (632)
+++++.+|+.+++.. +.|.+. .|.++.| .++++||.||++|.+|||.+ +..+++||++++.+..+
T Consensus 171 ig~li~~a~~kvG~~---GVItv~--~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki----- 240 (550)
T KOG0356|consen 171 IGNLISDAMKKVGRK---GVITVK--DGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKI----- 240 (550)
T ss_pred HHHHHHHHHHHhCcC---CeEEee--cCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhh-----
Confidence 999999999999865 556665 5666665 58999999999999999954 44578999999988874
Q ss_pred cCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCC------cEEEecCCchh-----
Q psy17074 519 RDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRD------MFCAGRVPEED----- 587 (632)
Q Consensus 519 ~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~------I~~v~~v~~~~----- 587 (632)
++++++.+ .++.......|++|++++|+.++|..|..|+ +++++.+.+-|
T Consensus 241 --------~~v~~ivp-----------~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~ 301 (550)
T KOG0356|consen 241 --------SSVQSIVP-----------ALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNL 301 (550)
T ss_pred --------hHHHHHhH-----------HHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHh
Confidence 45566554 4888888899999999999999999999985 78999996555
Q ss_pred HHHHHHHcCCeEeec------ccCCCCCCCeeeeEEEEEE
Q psy17074 588 LKRTMKACGGAVMTT------AHDLNDSVLGTCAVFDERQ 621 (632)
Q Consensus 588 L~rIa~~tGa~ii~~------l~~l~~~~lG~~~~v~~~~ 621 (632)
+.+|+.+||++++.. +++.++++||.|+++.+..
T Consensus 302 l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtk 341 (550)
T KOG0356|consen 302 LKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTK 341 (550)
T ss_pred hhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEec
Confidence 999999999998873 6778889999999987753
No 87
>KOG0357|consensus
Probab=99.89 E-value=2.1e-23 Score=208.39 Aligned_cols=221 Identities=25% Similarity=0.387 Sum_probs=161.4
Q ss_pred cchhhhcccC--ccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHH
Q psy17074 325 QPQILLLKEG--TENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLV 402 (632)
Q Consensus 325 ~~~~~~~~~~--~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~ 402 (632)
++|..++++. ..+..|.++..+|+.+.++++.+++||+||+|++||++.+.|++.+|||| .|++++++.
T Consensus 9 ~~~~iiLrDQd~~~Ri~G~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~IakLmv 79 (400)
T KOG0357|consen 9 GRPFIILRDQERKDRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQIAKLIV 79 (400)
T ss_pred cCceEEeeeccCCchhhHHHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHHHHHHH
Confidence 3566666544 45569999999999999999999999999999999999999999999999 789999999
Q ss_pred HHHHhccccccc-CCchhhHHHHHHHHhhhcCCccccchhhHHHHHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEE
Q psy17074 403 DIAKSQDAEIQK-SDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVD 481 (632)
Q Consensus 403 ~~a~~q~~~~~~-~~~~~~~~~L~~va~t~l~sK~~~~~~~~l~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~ 481 (632)
..+.+|++++.. .+... .|++- +.-+|..... ..|+-+ .+.+
T Consensus 80 ~LS~sqd~eIgdGtTgVv-----------vLa~a-----------lleqa~~li~-----~~ihpi----------ki~~ 122 (400)
T KOG0357|consen 80 ILSKSQDDEIGDGTTGVV-----------VLAGA-----------LLEQAHELID-----RGIHPI----------KIAQ 122 (400)
T ss_pred HhcccchhhhccCCcccE-----------Eeccc-----------chHhHHhhcc-----cccchh----------HHHH
Confidence 999999998821 11000 00000 0111111110 001101 1111
Q ss_pred eEEEecccCCCCCcCCceeecCceEEEecccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEe
Q psy17074 482 GVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSK 561 (632)
Q Consensus 482 Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~ 561 (632)
|+......+... |+- +.++-+ +.++++++++.|.+++|||
T Consensus 123 g~e~~~~~av~~-------------------l~~----------i~~~~e-----------f~emi~~vK~~ga~l~icq 162 (400)
T KOG0357|consen 123 GYEKAKVVAVEH-------------------LDE----------ISDPFE-----------FEEMIQQIKETGANLAICQ 162 (400)
T ss_pred hhhhHHHhhhhh-------------------hhh----------hccccc-----------HHHHHHHHHhhCCcEEEEe
Confidence 211111111000 000 000001 5678999999999999999
Q ss_pred CCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcC--eEEEEec
Q psy17074 562 LPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGS--ERDTLNR 631 (632)
Q Consensus 562 ~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~ 631 (632)
|++||+|-|+|.+|+..+|||++-.++|-||++||++|+++|++++++.||+|+.|++..+|. |+++.++
T Consensus 163 wgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~aglVrE~sfgttkdkmlviE 234 (400)
T KOG0357|consen 163 WGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVREISFGTTKDKMLVIE 234 (400)
T ss_pred cccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccHhhhCHhhccccceEEEEecccccceEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999994 6666665
No 88
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.84 E-value=2.4e-20 Score=185.12 Aligned_cols=115 Identities=37% Similarity=0.662 Sum_probs=112.2
Q ss_pred EEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCC
Q psy17074 75 VVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNA 154 (632)
Q Consensus 75 lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~ 154 (632)
||+++++|++.|+++|.++||.+++++++.+|+|||++|||++++++++++++.||+|++|++..++++++++|.+|..+
T Consensus 95 vii~~~~I~~~al~~l~~~~I~~v~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~ 174 (209)
T cd03333 95 VVIAEKGIDDLALHYLAKAGIMAVRRVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGG 174 (209)
T ss_pred EEEecCcccHHHHHHHHHCCCEEEEeCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECCeEEEEEEcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred ceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhC
Q psy17074 155 RTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRN 189 (632)
Q Consensus 155 ~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~ 189 (632)
.+|||+|||+|+.+++|.||+++||++++++++++
T Consensus 175 ~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 175 KAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred CEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999875
No 89
>KOG0230|consensus
Probab=99.66 E-value=2.4e-16 Score=183.03 Aligned_cols=185 Identities=22% Similarity=0.327 Sum_probs=164.5
Q ss_pred cchhhHHHHHHHHHHHHhcc------cCCC-CcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEec
Q psy17074 438 HQQKGFFSKMVVDAVMSLDD------LLPL-NMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLN 510 (632)
Q Consensus 438 ~~~~~~l~~li~~A~~~v~~------~~~~-~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~ 510 (632)
..|.+.+..|+.+|...+.. ..|+ ++|+|.++.||+..||+++.|+++.+...|. .|...+++|+|+++.
T Consensus 331 ~~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k---~M~~~~e~prilll~ 407 (1598)
T KOG0230|consen 331 QEWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHK---RMATKYENPRILLLG 407 (1598)
T ss_pred hhHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhh---hhhhhccCCceEEEe
Confidence 46889999999999998863 2333 7999999999999999999999999999887 588999999999999
Q ss_pred ccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHH
Q psy17074 511 IELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKR 590 (632)
Q Consensus 511 ~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~r 590 (632)
++|+|.+-..+ ...++.++++|.++++..|.+|....++++++.++|++.|+++|...+|..+-++++.-|+|
T Consensus 408 g~leyqrisn~-------lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leR 480 (1598)
T KOG0230|consen 408 GPLEYQRISNQ-------LSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLER 480 (1598)
T ss_pred cchhhhhhhcc-------ccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHH
Confidence 99999875543 23456667779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEeecccCCCCCCCeeeeEEEEEEEc-----CeEEEEecC
Q psy17074 591 TMKACGGAVMTTAHDLNDSVLGTCAVFDERQIG-----SERDTLNRE 632 (632)
Q Consensus 591 Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig-----~~~~~~~~~ 632 (632)
|+++|||.|+++++.++...||+|..|++..+- .+.++||+|
T Consensus 481 IsR~tga~I~~siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffeg 527 (1598)
T KOG0230|consen 481 ISRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEG 527 (1598)
T ss_pred HHHHhcCceecchhhhhccccCCCccHhhhhhhhcccchhhhHHhhc
Confidence 999999999999999999999999999998776 456666654
No 90
>KOG0230|consensus
Probab=99.49 E-value=4.9e-14 Score=164.10 Aligned_cols=153 Identities=20% Similarity=0.350 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEEeccccCCCC
Q psy17074 47 PDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLND 126 (632)
Q Consensus 47 ~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ii~~l~~l~~ 126 (632)
...++.++++|.++++.+|.+|....++++++.++|++.|+++|...+|..+-++++.-|+||+++|||.|+++++.++.
T Consensus 419 lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIsR~tga~I~~siDslt~ 498 (1598)
T KOG0230|consen 419 LSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERISRCTGADIVPSVDSLTS 498 (1598)
T ss_pred ccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHHHHhcCceecchhhhhc
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEEc-----ceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEecCChh
Q psy17074 127 SVLGTCAVFDERQIG-----SERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAI 199 (632)
Q Consensus 127 ~~lG~~~~v~~~~i~-----~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~ 199 (632)
..+|+|+.++++.+. .+.+++|+||..+.+|||+|||+...++.++|+.++-++.+++...-+-.++.--|+.
T Consensus 499 ~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~as 576 (1598)
T KOG0230|consen 499 QKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPLGCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGAS 576 (1598)
T ss_pred cccCCCccHhhhhhhhcccchhhhHHhhcCCCCCCceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCc
Confidence 999999999887765 5678999999999999999999999999999999999999999988777666666654
No 91
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=59.35 E-value=23 Score=30.12 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=35.4
Q ss_pred HHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHH
Q psy17074 546 KLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKR 590 (632)
Q Consensus 546 ~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~r 590 (632)
..+.+...++++|||. .|.+.+++.|..+||-++...+ .+++.
T Consensus 55 ~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~-~~i~~ 97 (103)
T cd00851 55 AAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE-GTVEE 97 (103)
T ss_pred HHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC-CCHHH
Confidence 4566677899999996 6999999999999999998776 44444
No 92
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=58.72 E-value=35 Score=28.71 Aligned_cols=50 Identities=6% Similarity=0.034 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCCcEEEEeCCccHHHHH----HHHHCCcEEEecCCchhHHHHHH
Q psy17074 544 YEKLDKIHASGAQVVLSKLPIGDVATQ----YFADRDMFCAGRVPEEDLKRTMK 593 (632)
Q Consensus 544 ~~~v~~i~~~gv~vvi~~~~I~~~al~----~L~~~~I~~v~~v~~~~L~rIa~ 593 (632)
++.++.|.+-.+.+|++++|+++.... ++.++||..+-..++.+|-+.|-
T Consensus 19 kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~LGkAcg 72 (84)
T PRK13600 19 KETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHVG 72 (84)
T ss_pred HHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhC
Confidence 345677777789999999999987665 55668999999999888766553
No 93
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=56.91 E-value=31 Score=28.82 Aligned_cols=42 Identities=14% Similarity=0.219 Sum_probs=33.5
Q ss_pred HHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHH
Q psy17074 547 LDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKR 590 (632)
Q Consensus 547 v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~r 590 (632)
.+.+...++++|||. .|.+.+...|..+||-++.. ...+++.
T Consensus 46 ~~~l~~~~v~~li~~-~iG~~~~~~L~~~gI~v~~~-~~~~i~~ 87 (94)
T PF02579_consen 46 AKFLAEEGVDVLICG-GIGEGAFRALKEAGIKVYQG-AGGDIEE 87 (94)
T ss_dssp HHHHHHTTESEEEES-CSCHHHHHHHHHTTSEEEES-TSSBHHH
T ss_pred HHHHHHcCCCEEEEe-CCCHHHHHHHHHCCCEEEEc-CCCCHHH
Confidence 555667899999986 58999999999999999998 4444443
No 94
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=56.11 E-value=31 Score=29.37 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=35.2
Q ss_pred HHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHH
Q psy17074 64 KLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRT 109 (632)
Q Consensus 64 ~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~i 109 (632)
..+.+...++++||+. ++.+.+.+.|..+||.++.... ..++.+
T Consensus 55 ~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~-~~i~~v 98 (103)
T cd00851 55 AAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE-GTVEEA 98 (103)
T ss_pred HHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC-CCHHHH
Confidence 5556667899999996 6999999999999999997665 444443
No 95
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=55.16 E-value=45 Score=30.07 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=40.1
Q ss_pred HHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCC
Q psy17074 63 EKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGG 115 (632)
Q Consensus 63 ~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa 115 (632)
...+.+++.|+++|||. .|.+-|.++|..+||-++.-.+...=+.|-....+
T Consensus 56 ~~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g 107 (121)
T COG1433 56 RIAELLVDEGVDVVIAS-NIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEG 107 (121)
T ss_pred HHHHHHHHcCCCEEEEC-ccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcC
Confidence 35788899999999998 69999999999999999877664444444444433
No 96
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=54.91 E-value=41 Score=28.03 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=34.4
Q ss_pred HHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHH
Q psy17074 64 KLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRT 109 (632)
Q Consensus 64 ~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~i 109 (632)
..+.+...++++|||. .|.+.+...|..+||.++.. ...+++.+
T Consensus 45 ~~~~l~~~~v~~li~~-~iG~~~~~~L~~~gI~v~~~-~~~~i~~~ 88 (94)
T PF02579_consen 45 IAKFLAEEGVDVLICG-GIGEGAFRALKEAGIKVYQG-AGGDIEEA 88 (94)
T ss_dssp HHHHHHHTTESEEEES-CSCHHHHHHHHHTTSEEEES-TSSBHHHH
T ss_pred HHHHHHHcCCCEEEEe-CCCHHHHHHHHHCCCEEEEc-CCCCHHHH
Confidence 3455666899999988 58999999999999999987 44444443
No 97
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=54.01 E-value=47 Score=29.97 Aligned_cols=51 Identities=14% Similarity=0.044 Sum_probs=39.6
Q ss_pred HHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCC
Q psy17074 546 KLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGG 597 (632)
Q Consensus 546 ~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa 597 (632)
+.+.+++.|+++|||. .|.+-+.++|..+||-++..++..-=+-|-....+
T Consensus 57 ~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g 107 (121)
T COG1433 57 IAELLVDEGVDVVIAS-NIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEG 107 (121)
T ss_pred HHHHHHHcCCCEEEEC-ccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcC
Confidence 4777889999999986 79999999999999999998884333334444433
No 98
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=49.29 E-value=65 Score=27.10 Aligned_cols=50 Identities=8% Similarity=0.068 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCCcEEEEecCcChhHHH----HHHHCCceEEEeCCchhHHHHH
Q psy17074 61 LYEKLDKIHASGAQVVLSKLPIGDVATQ----YFADRDMFCAGRVPEEDLKRTM 110 (632)
Q Consensus 61 i~~~~~~i~~~g~~lvi~~~~I~~~al~----~l~~~~I~~~~~v~~~~l~~ia 110 (632)
+.+.++.|.+-.+.+|++++++++.... ++.++|||.+---++.+|.+.|
T Consensus 18 ~kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~LGkAc 71 (84)
T PRK13600 18 LKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHV 71 (84)
T ss_pred HHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHh
Confidence 4556777777888999999999987655 5677899999877766665544
No 99
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=49.25 E-value=44 Score=28.30 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=34.4
Q ss_pred HHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHH
Q psy17074 547 LDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK 589 (632)
Q Consensus 547 v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~ 589 (632)
.+.+...++++|||.+ |.+.++..|..+||.++.......++
T Consensus 54 ~~~l~~~~v~~vi~~~-iG~~a~~~l~~~gI~v~~~~~~~~v~ 95 (102)
T cd00562 54 ARLLALEGCDAVLVGG-IGGPAAAKLEAAGIKPIKAAEGGTIE 95 (102)
T ss_pred HHHHHHCCCcEEEEcc-cCccHHHHHHHcCCEEEEcCCCCcHH
Confidence 5556678999999985 99999999999999999877633443
No 100
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=48.06 E-value=50 Score=27.95 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=34.3
Q ss_pred HHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHH
Q psy17074 64 KLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK 107 (632)
Q Consensus 64 ~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~ 107 (632)
..+.+...++++|||.. |.+.+...|..+||.++.......++
T Consensus 53 ~~~~l~~~~v~~vi~~~-iG~~a~~~l~~~gI~v~~~~~~~~v~ 95 (102)
T cd00562 53 AARLLALEGCDAVLVGG-IGGPAAAKLEAAGIKPIKAAEGGTIE 95 (102)
T ss_pred HHHHHHHCCCcEEEEcc-cCccHHHHHHHcCCEEEEcCCCCcHH
Confidence 45556678999999995 99999999999999999766523333
No 101
>PRK07283 hypothetical protein; Provisional
Probab=45.61 E-value=70 Score=27.56 Aligned_cols=49 Identities=14% Similarity=0.045 Sum_probs=37.2
Q ss_pred HHHHHHHcCCcEEEEecCcChhHH----HHHHHCCceEEEeCCchhHHHHHHHhCC
Q psy17074 64 KLDKIHASGAQVVLSKLPIGDVAT----QYFADRDMFCAGRVPEEDLKRTMKACGG 115 (632)
Q Consensus 64 ~~~~i~~~g~~lvi~~~~I~~~al----~~l~~~~I~~~~~v~~~~l~~ia~~tGa 115 (632)
..+.+.+-.+.+||.+.+.++... +.+..++||++....+ +.|..++|-
T Consensus 26 v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~---~eLG~a~Gk 78 (98)
T PRK07283 26 VVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFST---LELSAAVGK 78 (98)
T ss_pred HHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCH---HHHHHHhCC
Confidence 345566678899999999999888 5666779999876654 557777773
No 102
>PRK07283 hypothetical protein; Provisional
Probab=44.20 E-value=73 Score=27.45 Aligned_cols=49 Identities=14% Similarity=0.045 Sum_probs=37.6
Q ss_pred HHHHHHhcCCcEEEEeCCccHHHH----HHHHHCCcEEEecCCchhHHHHHHHcCC
Q psy17074 546 KLDKIHASGAQVVLSKLPIGDVAT----QYFADRDMFCAGRVPEEDLKRTMKACGG 597 (632)
Q Consensus 546 ~v~~i~~~gv~vvi~~~~I~~~al----~~L~~~~I~~v~~v~~~~L~rIa~~tGa 597 (632)
..+.+.+-.+.+||.+.|.++... +.+..++|.++...++ +.|..++|-
T Consensus 26 v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~---~eLG~a~Gk 78 (98)
T PRK07283 26 VVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFST---LELSAAVGK 78 (98)
T ss_pred HHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCH---HHHHHHhCC
Confidence 356666777999999999999887 5666789999877655 457777774
No 103
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=44.04 E-value=60 Score=30.89 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=38.1
Q ss_pred HHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEe-CC------chhHHHHHHHhCC
Q psy17074 63 EKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGR-VP------EEDLKRTMKACGG 115 (632)
Q Consensus 63 ~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~-v~------~~~l~~ia~~tGa 115 (632)
.-+|.|++.+++|||............|.+.|++++-- .. .+.++.++.++|-
T Consensus 51 ~n~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~ 110 (195)
T cd01143 51 PNVEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGA 110 (195)
T ss_pred CCHHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 35889999999999987666666778899999986532 21 1346666766664
No 104
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=41.03 E-value=97 Score=25.76 Aligned_cols=51 Identities=14% Similarity=0.142 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCcEEEEecCcChhHHH----HHHHCCceEEEeCCchhHHHHHHHhCCE
Q psy17074 63 EKLDKIHASGAQVVLSKLPIGDVATQ----YFADRDMFCAGRVPEEDLKRTMKACGGA 116 (632)
Q Consensus 63 ~~~~~i~~~g~~lvi~~~~I~~~al~----~l~~~~I~~~~~v~~~~l~~ia~~tGa~ 116 (632)
+.++.|.+-.+.+||.+.+.++.... ++..++||.+.--++ +.|..++|-.
T Consensus 18 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~---~eLG~a~G~~ 72 (82)
T PRK13602 18 QTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSM---KKLGKACGIE 72 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCH---HHHHHHHCCC
Confidence 34566667789999999999987654 457789999876644 5666777754
No 105
>PRK06683 hypothetical protein; Provisional
Probab=39.99 E-value=1e+02 Score=25.74 Aligned_cols=51 Identities=14% Similarity=0.047 Sum_probs=38.4
Q ss_pred HHHHHHHcCCcEEEEecCcChhHHHH----HHHCCceEEEeCCchhHHHHHHHhCCEE
Q psy17074 64 KLDKIHASGAQVVLSKLPIGDVATQY----FADRDMFCAGRVPEEDLKRTMKACGGAV 117 (632)
Q Consensus 64 ~~~~i~~~g~~lvi~~~~I~~~al~~----l~~~~I~~~~~v~~~~l~~ia~~tGa~i 117 (632)
.++.|.+-.+.+||++.+.++...+- +..++||.+..-+ .+.|..++|-.+
T Consensus 19 v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t---~~eLG~A~G~~~ 73 (82)
T PRK06683 19 TLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVES---VRKLGKVAGIQV 73 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECC---HHHHHHHhCCcc
Confidence 45666677899999999999877665 5778999987654 466777777654
No 106
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=39.31 E-value=68 Score=34.52 Aligned_cols=53 Identities=8% Similarity=0.093 Sum_probs=39.4
Q ss_pred HHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCc-------hhHHHHHHHhCCE
Q psy17074 64 KLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPE-------EDLKRTMKACGGA 116 (632)
Q Consensus 64 ~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~-------~~l~~ia~~tGa~ 116 (632)
-+|+|+.+++||||....-.+...+.|.+.||+++..... +.++.+++++|-.
T Consensus 111 n~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~e 170 (359)
T PRK09534 111 NVEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGNC 170 (359)
T ss_pred CHHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 4889999999999997655666788999999998754321 3456667777653
No 107
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=38.97 E-value=67 Score=33.15 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=42.1
Q ss_pred HHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEe-C-----CchhHHHHHHHhCCE
Q psy17074 63 EKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGR-V-----PEEDLKRTMKACGGA 116 (632)
Q Consensus 63 ~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~-v-----~~~~l~~ia~~tGa~ 116 (632)
.-+|.|+.++|||||.....++...+.|.+.||+++-- . -.+.++.++.++|..
T Consensus 82 ~n~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 82 PDMEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred CCHHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 34899999999999998888888889999999988632 1 123477788888754
No 108
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=38.41 E-value=99 Score=27.86 Aligned_cols=48 Identities=13% Similarity=0.035 Sum_probs=33.3
Q ss_pred HHHHHHcCCcEEEEecCcChh-H----HHHHHHCCceEEEeCCchhHHHHHHHhCC
Q psy17074 65 LDKIHASGAQVVLSKLPIGDV-A----TQYFADRDMFCAGRVPEEDLKRTMKACGG 115 (632)
Q Consensus 65 ~~~i~~~g~~lvi~~~~I~~~-a----l~~l~~~~I~~~~~v~~~~l~~ia~~tGa 115 (632)
++.|.+-.+.+||.+.++++. . ..++.++|||.+..-++ ++|..++|-
T Consensus 39 ~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk---~eLG~a~Gk 91 (122)
T PRK04175 39 TKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSK---KDLGKAAGL 91 (122)
T ss_pred HHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCH---HHHHHHhCC
Confidence 555556678999999999873 2 33467789997766655 455666664
No 109
>PRK06683 hypothetical protein; Provisional
Probab=38.05 E-value=1.1e+02 Score=25.59 Aligned_cols=51 Identities=14% Similarity=0.023 Sum_probs=38.8
Q ss_pred HHHHHHhcCCcEEEEeCCccHHHHHH----HHHCCcEEEecCCchhHHHHHHHcCCeE
Q psy17074 546 KLDKIHASGAQVVLSKLPIGDVATQY----FADRDMFCAGRVPEEDLKRTMKACGGAV 599 (632)
Q Consensus 546 ~v~~i~~~gv~vvi~~~~I~~~al~~----L~~~~I~~v~~v~~~~L~rIa~~tGa~i 599 (632)
.++.|.+..+.+||++.|.++...+- +..++|.++...++ +.|..++|..+
T Consensus 19 v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~---~eLG~A~G~~~ 73 (82)
T PRK06683 19 TLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESV---RKLGKVAGIQV 73 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCH---HHHHHHhCCcc
Confidence 35667777899999999999876654 56689999887755 45777788654
No 110
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=37.72 E-value=2.9e+02 Score=28.93 Aligned_cols=124 Identities=12% Similarity=0.094 Sum_probs=73.2
Q ss_pred EecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCc------Ch-----h-------HHHHHHHCCceEEEeCCc-
Q psy17074 43 EEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI------GD-----V-------ATQYFADRDMFCAGRVPE- 103 (632)
Q Consensus 43 ~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I------~~-----~-------al~~l~~~~I~~~~~v~~- 103 (632)
.+++++.+.++++.=-+.+...++.+.+.|++++...... ++ . ..+.+..+|.+.+-+.-.
T Consensus 152 ~~~~pe~~~~~l~~i~~~~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~~lH~cG~ 231 (330)
T cd03465 152 LYTDPELVHKLLEKCTEFIIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPVIHHNCGD 231 (330)
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCceEEEECCC
Confidence 4567899999999999999999999999999998887644 22 1 111233345554433322
Q ss_pred --hhHHHHHHHhCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHH
Q psy17074 104 --EDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHD 178 (632)
Q Consensus 104 --~~l~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~D 178 (632)
..++.+.. +|+.+++ ++.- .++..+.+. -+++.++..+... . ..++.|+.+.+.++.++.++.
T Consensus 232 ~~~~~~~l~~-~~~d~~~-~d~~--~dl~~~~~~-----~g~~~~i~G~id~-~--~~l~~gt~eei~~~v~~~l~~ 296 (330)
T cd03465 232 TAPILELMAD-LGADVFS-IDVT--VDLAEAKKK-----VGDKACLMGNLDP-I--DVLLNGSPEEIKEEVKELLEK 296 (330)
T ss_pred chhHHHHHHH-hCCCeEe-eccc--CCHHHHHHH-----hCCceEEEeCcCh-H--HhhcCCCHHHHHHHHHHHHHH
Confidence 35888876 7777765 2211 133333221 2334555555432 1 346666665555555554443
No 111
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=37.45 E-value=84 Score=31.23 Aligned_cols=54 Identities=11% Similarity=0.068 Sum_probs=40.8
Q ss_pred HHHHHHHHcCCcEEEEecCcChh-HHHHHHHCCceEEEeC--C----chhHHHHHHHhCCE
Q psy17074 63 EKLDKIHASGAQVVLSKLPIGDV-ATQYFADRDMFCAGRV--P----EEDLKRTMKACGGA 116 (632)
Q Consensus 63 ~~~~~i~~~g~~lvi~~~~I~~~-al~~l~~~~I~~~~~v--~----~~~l~~ia~~tGa~ 116 (632)
.-+|+|+..+|+|||....-++. ..+.|.+.|++++-.- . .+.++.|+.++|..
T Consensus 48 ~n~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 48 LDLERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred CCHHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 45899999999999997655454 4888999999865432 1 34488888888875
No 112
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=37.07 E-value=71 Score=26.96 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=37.6
Q ss_pred HHHHHHHhcCCcEEEEeCCccHHHH-----HHHHHCCcEEEecCCchhHHHHHHHcCCe
Q psy17074 545 EKLDKIHASGAQVVLSKLPIGDVAT-----QYFADRDMFCAGRVPEEDLKRTMKACGGA 598 (632)
Q Consensus 545 ~~v~~i~~~gv~vvi~~~~I~~~al-----~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ 598 (632)
+..+.+....+.+||.+.++++... .++.+++|.++...++.+ |.+++|-.
T Consensus 22 ~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s~~e---LG~~~g~~ 77 (95)
T PF01248_consen 22 EVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPSKEE---LGRACGKK 77 (95)
T ss_dssp HHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESHHHH---HHHHTTSS
T ss_pred HHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEECCHHH---HHHHHCCC
Confidence 4466677778899999999977443 466789999999886655 55556654
No 113
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=36.72 E-value=1.2e+02 Score=25.27 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=37.7
Q ss_pred HHHHHHhcCCcEEEEeCCccHHHHH----HHHHCCcEEEecCCchhHHHHHHHcCCe
Q psy17074 546 KLDKIHASGAQVVLSKLPIGDVATQ----YFADRDMFCAGRVPEEDLKRTMKACGGA 598 (632)
Q Consensus 546 ~v~~i~~~gv~vvi~~~~I~~~al~----~L~~~~I~~v~~v~~~~L~rIa~~tGa~ 598 (632)
.++.|.+..+.+||++.|.++.... ++..++|.++...++. .|..++|-.
T Consensus 19 v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~~---eLG~a~G~~ 72 (82)
T PRK13602 19 TVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMK---KLGKACGIE 72 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCHH---HHHHHHCCC
Confidence 4666777789999999999887644 4577899998877664 466777764
No 114
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=36.57 E-value=1e+02 Score=27.74 Aligned_cols=50 Identities=10% Similarity=0.021 Sum_probs=35.6
Q ss_pred HHHHHHhcCCcEEEEeCCccHH-H----HHHHHHCCcEEEecCCchhHHHHHHHcCCe
Q psy17074 546 KLDKIHASGAQVVLSKLPIGDV-A----TQYFADRDMFCAGRVPEEDLKRTMKACGGA 598 (632)
Q Consensus 546 ~v~~i~~~gv~vvi~~~~I~~~-a----l~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ 598 (632)
.++.|.+..+.+||.+.|+++. . .+++.++||..+...++. +|..++|-.
T Consensus 38 v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk~---eLG~a~Gk~ 92 (122)
T PRK04175 38 TTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSKK---DLGKAAGLE 92 (122)
T ss_pred HHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHH---HHHHHhCCC
Confidence 3556666779999999999873 2 334677899987777665 466666654
No 115
>PRK07714 hypothetical protein; Provisional
Probab=36.32 E-value=1.3e+02 Score=25.97 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=36.5
Q ss_pred HHHHHHHcCCcEEEEecCcChhHHHHH----HHCCceEEEeCCchhHHHHHHHhCCE
Q psy17074 64 KLDKIHASGAQVVLSKLPIGDVATQYF----ADRDMFCAGRVPEEDLKRTMKACGGA 116 (632)
Q Consensus 64 ~~~~i~~~g~~lvi~~~~I~~~al~~l----~~~~I~~~~~v~~~~l~~ia~~tGa~ 116 (632)
..+.+.+-.+.+||.+.++++....-+ ..+++|.+...++ +.+..++|-.
T Consensus 26 v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk---~eLG~a~Gk~ 79 (100)
T PRK07714 26 VLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENR---QQLGHAIGKD 79 (100)
T ss_pred HHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCH---HHHHHHhCCC
Confidence 355666678899999999988765544 5679999876655 5566677743
No 116
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=35.00 E-value=1.3e+02 Score=25.05 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=37.1
Q ss_pred HHHHHHHHcCCcEEEEecCcChhHHHH----HHHCCceEEEeCCchhHHHHHHHhCCE
Q psy17074 63 EKLDKIHASGAQVVLSKLPIGDVATQY----FADRDMFCAGRVPEEDLKRTMKACGGA 116 (632)
Q Consensus 63 ~~~~~i~~~g~~lvi~~~~I~~~al~~----l~~~~I~~~~~v~~~~l~~ia~~tGa~ 116 (632)
..++.|.+-.+.+||++.+.++....- +..++||....-+ .+.|..++|-.
T Consensus 15 ~vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t---~~eLG~A~G~~ 69 (82)
T PRK13601 15 QTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDT---MKELGVMCGID 69 (82)
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCC---HHHHHHHHCCc
Confidence 345666778899999999999877654 4568999965554 45666777754
No 117
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=34.95 E-value=73 Score=27.22 Aligned_cols=49 Identities=18% Similarity=0.322 Sum_probs=20.8
Q ss_pred ccccHHHHHHHHHHHHHHHHhhhhccccccceEEecCHHHHHHHHHHHHHHHHHH
Q psy17074 10 AHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEK 64 (632)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~ 64 (632)
...-||.+|+++|..|| .+.-+.+.+++ +.+.++-..+++.....+...
T Consensus 46 ~~MKEER~K~E~~~q~r-~rES~~Er~K~-----~~s~~~~q~Lm~rQN~mm~~q 94 (121)
T PF10669_consen 46 IRMKEERSKKEEKRQKR-NRESKRERQKF-----IWSMNKQQSLMNRQNNMMKQQ 94 (121)
T ss_pred HHHHHHHHHHHHHHHHH-hhhhHHHHHhH-----HhhhhHHHHHHHHHhHHHHHH
Confidence 33445444444443333 33333333333 234445555555444444433
No 118
>PRK07714 hypothetical protein; Provisional
Probab=34.74 E-value=1.3e+02 Score=25.86 Aligned_cols=50 Identities=14% Similarity=0.057 Sum_probs=36.8
Q ss_pred HHHHHHhcCCcEEEEeCCccHHHHHHH----HHCCcEEEecCCchhHHHHHHHcCCe
Q psy17074 546 KLDKIHASGAQVVLSKLPIGDVATQYF----ADRDMFCAGRVPEEDLKRTMKACGGA 598 (632)
Q Consensus 546 ~v~~i~~~gv~vvi~~~~I~~~al~~L----~~~~I~~v~~v~~~~L~rIa~~tGa~ 598 (632)
..+.+.+-.+.+||.+.|.++....-+ ..++|.++...+++ .|..++|-.
T Consensus 26 v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk~---eLG~a~Gk~ 79 (100)
T PRK07714 26 VLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENRQ---QLGHAIGKD 79 (100)
T ss_pred HHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCHH---HHHHHhCCC
Confidence 356667778999999999988765544 55799988877664 466777754
No 119
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=34.27 E-value=1e+02 Score=29.24 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=38.6
Q ss_pred HHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEec--CC-----chhHHHHHHHcCCe
Q psy17074 547 LDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGR--VP-----EEDLKRTMKACGGA 598 (632)
Q Consensus 547 v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~--v~-----~~~L~rIa~~tGa~ 598 (632)
+|.|++.+++|||............|.+.|+.++-. .. .+.++.+++++|-.
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~~ 111 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGAE 111 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCCh
Confidence 777889999999987766666778899999954432 21 24577899999864
No 120
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=34.25 E-value=1.2e+02 Score=26.98 Aligned_cols=48 Identities=10% Similarity=0.008 Sum_probs=33.4
Q ss_pred HHHHHHcCCcEEEEecCcChh-H----HHHHHHCCceEEEeCCchhHHHHHHHhCC
Q psy17074 65 LDKIHASGAQVVLSKLPIGDV-A----TQYFADRDMFCAGRVPEEDLKRTMKACGG 115 (632)
Q Consensus 65 ~~~i~~~g~~lvi~~~~I~~~-a----l~~l~~~~I~~~~~v~~~~l~~ia~~tGa 115 (632)
++.|..-.+.+||.+.++++. . .+++..++||.+..-++. +|..++|-
T Consensus 35 ~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~---eLG~a~Gk 87 (117)
T TIGR03677 35 TKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKE---DLGAAAGL 87 (117)
T ss_pred HHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHH---HHHHHhCC
Confidence 455555668899999999774 3 345788899977766554 45566654
No 121
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=33.72 E-value=1.2e+02 Score=27.08 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=35.3
Q ss_pred HHHHHHhcCCcEEEEeCCccHH-H----HHHHHHCCcEEEecCCchhHHHHHHHcCC
Q psy17074 546 KLDKIHASGAQVVLSKLPIGDV-A----TQYFADRDMFCAGRVPEEDLKRTMKACGG 597 (632)
Q Consensus 546 ~v~~i~~~gv~vvi~~~~I~~~-a----l~~L~~~~I~~v~~v~~~~L~rIa~~tGa 597 (632)
.++.|.+..+.+||++.|+++. . .+++..++|..+...++.+ |.+++|-
T Consensus 34 v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~e---LG~a~Gk 87 (117)
T TIGR03677 34 VTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKED---LGAAAGL 87 (117)
T ss_pred HHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHHH---HHHHhCC
Confidence 3556666679999999999764 3 3457789999887777655 5556664
No 122
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=33.56 E-value=1.3e+02 Score=31.84 Aligned_cols=56 Identities=14% Similarity=0.074 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEEe
Q psy17074 62 YEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVM 118 (632)
Q Consensus 62 ~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ii 118 (632)
.++++.+++.++++|++..+.... ...|..+||.++..+..-..-+.+...|+..+
T Consensus 72 ~~~l~vi~e~~v~~V~~~~G~P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~v 127 (320)
T cd04743 72 AAQLAVVRAIKPTFALIAGGRPDQ-ARALEAIGISTYLHVPSPGLLKQFLENGARKF 127 (320)
T ss_pred HHHHHHHHhcCCcEEEEcCCChHH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEE
Confidence 456788888999999999887766 58899999999988877666666776777544
No 123
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=33.53 E-value=68 Score=32.47 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=38.6
Q ss_pred HHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchh
Q psy17074 545 EKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEED 587 (632)
Q Consensus 545 ~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~ 587 (632)
+++.+.+..|+|+|++-..-...+.++..+.||+.+..++..-
T Consensus 183 emv~Ka~~aGIpvlvS~sapT~lavelA~~~giTLigf~R~~r 225 (237)
T TIGR00129 183 EMVQKAARCGVPIIASKSAPTDLAIEVAEESNITLIGFARNGR 225 (237)
T ss_pred HHHHHHHHcCCCEEEEcccchHHHHHHHHHhCCEEEEEecCCc
Confidence 4589999999999999999999999999999999998876543
No 124
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=33.32 E-value=88 Score=26.35 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCCcEEEEecCcChhHH-----HHHHHCCceEEEeCCchhHHHHHHHhCCE
Q psy17074 62 YEKLDKIHASGAQVVLSKLPIGDVAT-----QYFADRDMFCAGRVPEEDLKRTMKACGGA 116 (632)
Q Consensus 62 ~~~~~~i~~~g~~lvi~~~~I~~~al-----~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ 116 (632)
.+..+.+..-.+.+||.+.++++... .++.+++||.+...++ +.|.+++|-.
T Consensus 21 ~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s~---~eLG~~~g~~ 77 (95)
T PF01248_consen 21 KEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPSK---EELGRACGKK 77 (95)
T ss_dssp HHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESHH---HHHHHHTTSS
T ss_pred HHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEECCH---HHHHHHHCCC
Confidence 34466666778899999999987544 4678899999877644 5566666654
No 125
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=33.04 E-value=1.3e+02 Score=26.56 Aligned_cols=49 Identities=14% Similarity=0.094 Sum_probs=36.1
Q ss_pred HHHHHHHcCCcEEEEecCcChhH----HHHHHHCCceEEEe-CCchhHHHHHHHhCC
Q psy17074 64 KLDKIHASGAQVVLSKLPIGDVA----TQYFADRDMFCAGR-VPEEDLKRTMKACGG 115 (632)
Q Consensus 64 ~~~~i~~~g~~lvi~~~~I~~~a----l~~l~~~~I~~~~~-v~~~~l~~ia~~tGa 115 (632)
.++.|..-.+.+||++.+.++.. .+++..++||++.. -.+ +.|..++|-
T Consensus 33 vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~---~eLG~A~Gk 86 (108)
T PTZ00106 33 TLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNN---NDLGTACGR 86 (108)
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCH---HHHHHHhCC
Confidence 35566667899999999998875 45567789999864 444 556777774
No 126
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=32.87 E-value=91 Score=32.17 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=41.4
Q ss_pred HHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEec-C-C----chhHHHHHHHcCCe
Q psy17074 547 LDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGR-V-P----EEDLKRTMKACGGA 598 (632)
Q Consensus 547 v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~-v-~----~~~L~rIa~~tGa~ 598 (632)
+|.|++.+++|||.....++.....|.+.||.++-. . . .+.++.+++++|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 778899999999998888888888999999866532 1 1 35578899999865
No 127
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=32.57 E-value=1.6e+02 Score=31.02 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEEe
Q psy17074 62 YEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVM 118 (632)
Q Consensus 62 ~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ii 118 (632)
.++++.+++.++++|.+..+......+.+..+|+.++-.+...+.-+-+...|+..+
T Consensus 77 ~~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~I 133 (307)
T TIGR03151 77 DELVDLVIEEKVPVVTTGAGNPGKYIPRLKENGVKVIPVVASVALAKRMEKAGADAV 133 (307)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEE
Confidence 456777888999999998888877889999999999888876655555665676544
No 128
>KOG2422|consensus
Probab=32.07 E-value=13 Score=41.84 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=11.9
Q ss_pred ccChHhHHHHHHHHhccccc
Q psy17074 393 IVHPAAKTLVDIAKSQDAEI 412 (632)
Q Consensus 393 i~hP~akll~~~a~~q~~~~ 412 (632)
.+.|+..+++.+=...++++
T Consensus 481 ~e~pal~~lv~lY~~r~~~v 500 (665)
T KOG2422|consen 481 SELPALMLLVKLYANRNEEV 500 (665)
T ss_pred ccchHHHHHHHHHHhhhhHh
Confidence 35667666666655555555
No 129
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=31.64 E-value=1.4e+02 Score=29.18 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=39.3
Q ss_pred HHHHHHcCCcEEEEecCc-ChhHHHHHHHCCceEEEeCCc-------hhHHHHHHHhCC
Q psy17074 65 LDKIHASGAQVVLSKLPI-GDVATQYFADRDMFCAGRVPE-------EDLKRTMKACGG 115 (632)
Q Consensus 65 ~~~i~~~g~~lvi~~~~I-~~~al~~l~~~~I~~~~~v~~-------~~l~~ia~~tGa 115 (632)
+|+|+.++|+|||..... .......+.+.+||++---.. +.++.++.++|.
T Consensus 53 ~E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~i~~lg~~~g~ 111 (238)
T PF01497_consen 53 LEAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSPFDDWKEQIRQLGKALGK 111 (238)
T ss_dssp HHHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTCSHHHHHHHHHHHHHHTS
T ss_pred HHHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeecccchHHHHHHHHHHHHhccc
Confidence 488999999999999988 788888889999998854433 357778887776
No 130
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=31.07 E-value=57 Score=29.49 Aligned_cols=61 Identities=7% Similarity=-0.035 Sum_probs=40.9
Q ss_pred eEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCc--ChhHHHHHHHCCceEEEeC
Q psy17074 41 EEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI--GDVATQYFADRDMFCAGRV 101 (632)
Q Consensus 41 ~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I--~~~al~~l~~~~I~~~~~v 101 (632)
++.+=...++.-+..-..+...+.++++...+++.+|.+.+. .+..++.+.++++|.++--
T Consensus 50 RIQiiG~~E~~yl~~l~~~~r~~~l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~ 112 (127)
T PF02603_consen 50 RIQIIGNTESAYLNSLDEEERKERLEKLFSYNPPCIIVTRGLEPPPELIELAEKYNIPLLRTP 112 (127)
T ss_dssp SEEEE-HHHHHHHCCS-HHHHCCHHHHHCTTT-S-EEEETTT---HHHHHHHHHCT--EEEES
T ss_pred eEEEEcHHHHHHHHHCCHHHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEcC
Confidence 444444555555555555566778999999999999999876 6888899999999999754
No 131
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=30.98 E-value=78 Score=32.04 Aligned_cols=60 Identities=10% Similarity=-0.005 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcCCc----EEEEecCcChhHHHHHHHCCceEEEeCC--chhHHHHHHHhCCEEec
Q psy17074 60 ILYEKLDKIHASGAQ----VVLSKLPIGDVATQYFADRDMFCAGRVP--EEDLKRTMKACGGAVMT 119 (632)
Q Consensus 60 ~i~~~~~~i~~~g~~----lvi~~~~I~~~al~~l~~~~I~~~~~v~--~~~l~~ia~~tGa~ii~ 119 (632)
.+.+++-+....|.+ ++++.+-++-+...-....|||++-..+ -..-=++|+..|-+++.
T Consensus 154 AlDK~iG~~ll~g~~~~~~~l~~SGRis~emv~Ka~~aGIpvlvS~sapT~lavelA~~~giTLig 219 (237)
T TIGR00129 154 AVDKLIGSALLNGANLRKGFILYSGRISSEMVQKAARCGVPIIASKSAPTDLAIEVAEESNITLIG 219 (237)
T ss_pred HHHHHHHHHHHcCCCccCcEEEEeCCCcHHHHHHHHHcCCCEEEEcccchHHHHHHHHHhCCEEEE
Confidence 344555555555655 7888888888888888888888875543 33445678888888774
No 132
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=30.42 E-value=1.8e+02 Score=25.11 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=35.7
Q ss_pred HHHHHHHcCCcEEEEecCcChhHHH----HHHHCCceEEEeC-CchhHHHHHHHhCC
Q psy17074 64 KLDKIHASGAQVVLSKLPIGDVATQ----YFADRDMFCAGRV-PEEDLKRTMKACGG 115 (632)
Q Consensus 64 ~~~~i~~~g~~lvi~~~~I~~~al~----~l~~~~I~~~~~v-~~~~l~~ia~~tGa 115 (632)
.++.+.+..+.+||++.+.++.... ++..++||++... ++ +.|..++|-
T Consensus 24 v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk---~eLG~a~Gk 77 (99)
T PRK01018 24 TIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSS---VELGTLCGK 77 (99)
T ss_pred HHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCH---HHHHHHhCC
Confidence 4566667789999999999876554 4577899998764 54 456667774
No 133
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=29.85 E-value=1.3e+02 Score=29.92 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=39.3
Q ss_pred HHHHHhcCCcEEEEeCCccHH-HHHHHHHCCcEEEecC--C----chhHHHHHHHcCCe
Q psy17074 547 LDKIHASGAQVVLSKLPIGDV-ATQYFADRDMFCAGRV--P----EEDLKRTMKACGGA 598 (632)
Q Consensus 547 v~~i~~~gv~vvi~~~~I~~~-al~~L~~~~I~~v~~v--~----~~~L~rIa~~tGa~ 598 (632)
+|.|++.+++|||.....++. ....|.+.|+.++-.. . .+.++.|+.++|-.
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 788899999999997655454 4888999998655432 1 45588899999986
No 134
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=29.79 E-value=68 Score=30.46 Aligned_cols=37 Identities=8% Similarity=-0.089 Sum_probs=29.9
Q ss_pred HHHHHHHHcCCcEEEEecCcChh-HHHHHHHCCceEEE
Q psy17074 63 EKLDKIHASGAQVVLSKLPIGDV-ATQYFADRDMFCAG 99 (632)
Q Consensus 63 ~~~~~i~~~g~~lvi~~~~I~~~-al~~l~~~~I~~~~ 99 (632)
.-+|+|+..+|+|||......+. ....|.+.|||++-
T Consensus 60 ~n~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~ 97 (186)
T cd01141 60 LNVELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLY 97 (186)
T ss_pred CCHHHHhccCCCEEEEecCCCchhHHHHHHHcCCCEEE
Confidence 44899999999999987665553 88889999998754
No 135
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=29.44 E-value=85 Score=32.28 Aligned_cols=42 Identities=12% Similarity=0.145 Sum_probs=38.3
Q ss_pred HHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCch
Q psy17074 545 EKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEE 586 (632)
Q Consensus 545 ~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~ 586 (632)
+++.+.+..|+++|++-..-...+.++..++||+.|..++..
T Consensus 212 emv~Ka~~aGipvivS~saPT~lAVelA~~~giTLiGf~R~~ 253 (263)
T PRK00724 212 EMVQKAAMAGIPILVAVSAPTSLAVELAEELGLTLVGFARGG 253 (263)
T ss_pred HHHHHHHHcCCcEEEEcccchHHHHHHHHHhCCEEEEEecCC
Confidence 469999999999999999999999999999999999887654
No 136
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=28.81 E-value=1.6e+02 Score=25.99 Aligned_cols=50 Identities=14% Similarity=0.087 Sum_probs=37.2
Q ss_pred HHHHHHhcCCcEEEEeCCccHHH----HHHHHHCCcEEEec-CCchhHHHHHHHcCCe
Q psy17074 546 KLDKIHASGAQVVLSKLPIGDVA----TQYFADRDMFCAGR-VPEEDLKRTMKACGGA 598 (632)
Q Consensus 546 ~v~~i~~~gv~vvi~~~~I~~~a----l~~L~~~~I~~v~~-v~~~~L~rIa~~tGa~ 598 (632)
.++.|...++.+||++.+.++.. .+++..+||.++.. .++ +.|.+++|-.
T Consensus 33 vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~---~eLG~A~Gk~ 87 (108)
T PTZ00106 33 TLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNN---NDLGTACGRH 87 (108)
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCH---HHHHHHhCCc
Confidence 45666777899999999998874 45667789999875 444 4577778844
No 137
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=28.50 E-value=2.4e+02 Score=25.00 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=44.7
Q ss_pred HHHHHhcCCcEEEEeCCc------cHHHHHHHHHCCcEEEecCCchhHHHHHHHcCCe
Q psy17074 547 LDKIHASGAQVVLSKLPI------GDVATQYFADRDMFCAGRVPEEDLKRTMKACGGA 598 (632)
Q Consensus 547 v~~i~~~gv~vvi~~~~I------~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ 598 (632)
++.+...++.+|++.-++ ++.+..+|.+.++-++..|-.+-++|.-..-|+.
T Consensus 54 le~~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT~EAikr~nel~~~k 111 (121)
T COG1504 54 LEELLEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIELPTPEAIKRYNELRGKK 111 (121)
T ss_pred HHHHHhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEeCCHHHHHHHHHHhccc
Confidence 344455799999998776 8999999999999999999999999999988864
No 138
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=28.34 E-value=2e+02 Score=24.00 Aligned_cols=50 Identities=14% Similarity=0.045 Sum_probs=36.3
Q ss_pred HHHHHHhcCCcEEEEeCCccHHHHHH----HHHCCcEEEecCCchhHHHHHHHcCCe
Q psy17074 546 KLDKIHASGAQVVLSKLPIGDVATQY----FADRDMFCAGRVPEEDLKRTMKACGGA 598 (632)
Q Consensus 546 ~v~~i~~~gv~vvi~~~~I~~~al~~----L~~~~I~~v~~v~~~~L~rIa~~tGa~ 598 (632)
.++.|.+..+.+||++.|.++....- +..++|.++..-++ +.|..++|..
T Consensus 16 vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~---~eLG~A~G~~ 69 (82)
T PRK13601 16 TLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTM---KELGVMCGID 69 (82)
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCH---HHHHHHHCCc
Confidence 35667777899999999998876554 45589999765555 4466677754
No 139
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=28.12 E-value=1.9e+02 Score=25.85 Aligned_cols=48 Identities=10% Similarity=0.127 Sum_probs=34.5
Q ss_pred HHHHHHHHcCCcEEEEecCcChhH-----HHHHHHCCceEEEeCCchhHHHHH
Q psy17074 63 EKLDKIHASGAQVVLSKLPIGDVA-----TQYFADRDMFCAGRVPEEDLKRTM 110 (632)
Q Consensus 63 ~~~~~i~~~g~~lvi~~~~I~~~a-----l~~l~~~~I~~~~~v~~~~l~~ia 110 (632)
+.++.|-+-.+.||+.+.++++.- ..+|.++|||.+---++.+|-+.+
T Consensus 34 e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~LG~a~ 86 (116)
T COG1358 34 EVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKELGKAV 86 (116)
T ss_pred HHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHh
Confidence 335556666789999999999432 234667999999888777665544
No 140
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=28.06 E-value=1.3e+02 Score=32.27 Aligned_cols=52 Identities=8% Similarity=0.089 Sum_probs=40.2
Q ss_pred HHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCC-------chhHHHHHHHcCCe
Q psy17074 547 LDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVP-------EEDLKRTMKACGGA 598 (632)
Q Consensus 547 v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~-------~~~L~rIa~~tGa~ 598 (632)
+|.|+..+++|||.....++...+-|.+.||.++.... .+.++.|++++|-.
T Consensus 112 ~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~e 170 (359)
T PRK09534 112 VEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGNC 170 (359)
T ss_pred HHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 78889999999998765566678889999998865432 25567788888874
No 141
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=27.85 E-value=1.8e+02 Score=25.97 Aligned_cols=47 Identities=11% Similarity=0.110 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCcEEEEeCCccHH-H----HHHHHHCCcEEEecCCchhHHHH
Q psy17074 545 EKLDKIHASGAQVVLSKLPIGDV-A----TQYFADRDMFCAGRVPEEDLKRT 591 (632)
Q Consensus 545 ~~v~~i~~~gv~vvi~~~~I~~~-a----l~~L~~~~I~~v~~v~~~~L~rI 591 (632)
..++.|.+-...+|+.+.|++|. . ..++..+||..+...++.+|-+.
T Consensus 34 e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~LG~a 85 (116)
T COG1358 34 EVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKELGKA 85 (116)
T ss_pred HHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHHHHHH
Confidence 44556666678999999999943 2 23556689999999998876554
No 142
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=27.66 E-value=94 Score=31.96 Aligned_cols=59 Identities=12% Similarity=-0.035 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCCc----EEEEecCcChhHHHHHHHCCceEEEeCCc--hhHHHHHHHhCCEEec
Q psy17074 61 LYEKLDKIHASGAQ----VVLSKLPIGDVATQYFADRDMFCAGRVPE--EDLKRTMKACGGAVMT 119 (632)
Q Consensus 61 i~~~~~~i~~~g~~----lvi~~~~I~~~al~~l~~~~I~~~~~v~~--~~l~~ia~~tGa~ii~ 119 (632)
+.+++-.....|.+ ++++.+-++-+..+-....|||++-..+. ..-=++|+-.|-+++.
T Consensus 184 vDKviG~all~g~~~~~~~l~~SGR~s~emv~Ka~~aGipvivS~saPT~lAVelA~~~giTLiG 248 (263)
T PRK00724 184 LDKLIGAALRAGIPLRDGALLVSGRASSEMVQKAAMAGIPILVAVSAPTSLAVELAEELGLTLVG 248 (263)
T ss_pred HHHHHHHHHHcCCCccCcEEEEeCCchHHHHHHHHHcCCcEEEEcccchHHHHHHHHHhCCEEEE
Confidence 44444444455554 67888888888888888888887755543 3344677777777764
No 143
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=27.36 E-value=1.2e+02 Score=28.76 Aligned_cols=50 Identities=12% Similarity=-0.065 Sum_probs=37.1
Q ss_pred HHHHHhcCCcEEEEeCCccHH-HHHHHHHCCcEEEecC-----C--chhHHHHHHHcC
Q psy17074 547 LDKIHASGAQVVLSKLPIGDV-ATQYFADRDMFCAGRV-----P--EEDLKRTMKACG 596 (632)
Q Consensus 547 v~~i~~~gv~vvi~~~~I~~~-al~~L~~~~I~~v~~v-----~--~~~L~rIa~~tG 596 (632)
+|.|++.+++|||......+. ....|.+.||.++-.. . ...++.++.++|
T Consensus 62 ~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~~~~~~~~~~~i~~~g~~~g 119 (186)
T cd01141 62 VELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVNEYPSPLGRAEWIKFAAAFYG 119 (186)
T ss_pred HHHHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeCCCCChhhHHHHHHHHHHHcC
Confidence 788899999999987666554 8888999998554332 1 244777888888
No 144
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=27.11 E-value=1.3e+02 Score=31.83 Aligned_cols=52 Identities=10% Similarity=0.031 Sum_probs=37.5
Q ss_pred HHHHHHHcCCcEEEEecCc-----ChhHHHHHHHCCceEEEeC--------CchhHHHHHHHhCC
Q psy17074 64 KLDKIHASGAQVVLSKLPI-----GDVATQYFADRDMFCAGRV--------PEEDLKRTMKACGG 115 (632)
Q Consensus 64 ~~~~i~~~g~~lvi~~~~I-----~~~al~~l~~~~I~~~~~v--------~~~~l~~ia~~tGa 115 (632)
-+|+|+.++++|||..... .......|.+.|||++.-- -.+.++.++.++|-
T Consensus 83 n~E~l~~l~PDLIi~~~~~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~i~~lg~i~g~ 147 (342)
T cd01139 83 SVEKVLTLKPDLVILNIWAKTTAEESGILEKLEQAGIPVVFVDFRQKPLKNTTPSMRLLGKALGR 147 (342)
T ss_pred CHHHHhhcCCCEEEEeccccccchhhHHHHHHHHcCCcEEEEeCCCchhhhHHHHHHHHHHHhCC
Confidence 4889999999999987554 3457888999999976532 12346666776664
No 145
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=26.78 E-value=1.5e+02 Score=30.03 Aligned_cols=38 Identities=16% Similarity=0.058 Sum_probs=30.4
Q ss_pred HHHHHHHHcCCcEEEEecC-cChhHHHHHHHCCceEEEe
Q psy17074 63 EKLDKIHASGAQVVLSKLP-IGDVATQYFADRDMFCAGR 100 (632)
Q Consensus 63 ~~~~~i~~~g~~lvi~~~~-I~~~al~~l~~~~I~~~~~ 100 (632)
.-+|+|+.++++|||...+ -.....+.|.+.||+++.-
T Consensus 63 ~n~E~il~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~ 101 (260)
T PRK03379 63 MNLERIVALKPDLVLAWRGGNAERQVDQLASLGIKVMWV 101 (260)
T ss_pred CCHHHHHhcCCCEEEEecCCCcHHHHHHHHHCCCCEEEe
Confidence 4589999999999998654 3456778899999998754
No 146
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=26.63 E-value=1.3e+02 Score=29.21 Aligned_cols=76 Identities=13% Similarity=0.142 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCC----cEEEecCCchhHHHHHHHcCCeEeecccCCCCCCCeeeeE
Q psy17074 541 KILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRD----MFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAV 616 (632)
Q Consensus 541 ~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~----I~~v~~v~~~~L~rIa~~tGa~ii~~l~~l~~~~lG~~~~ 616 (632)
..+++.++.+.+.++++++++.+.++..-.+|.... |..+..++-.+--.+ -|-. ++-....+..|+++.
T Consensus 76 p~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~---dg~h---~i~~~~ds~fG~dK~ 149 (220)
T COG4359 76 PGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHI---DGQH---SIKYTDDSQFGHDKS 149 (220)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcC---CCce---eeecCCccccCCCcc
Confidence 467888999999999999999999999888887765 777777654321110 1111 111223467777776
Q ss_pred EEEEEE
Q psy17074 617 FDERQI 622 (632)
Q Consensus 617 v~~~~i 622 (632)
-.+...
T Consensus 150 ~vI~~l 155 (220)
T COG4359 150 SVIHEL 155 (220)
T ss_pred hhHHHh
Confidence 555443
No 147
>PRK11778 putative inner membrane peptidase; Provisional
Probab=25.58 E-value=2.4e+02 Score=30.12 Aligned_cols=30 Identities=10% Similarity=0.118 Sum_probs=17.3
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHhCCe
Q psy17074 162 RGGAEQFLEETERSLHDAIMIVRRTIRNHA 191 (632)
Q Consensus 162 rG~t~~~l~E~~~~i~Dal~~~~~a~~~~~ 191 (632)
+..|+...+.....+.+.-......+.+++
T Consensus 226 ~~~see~Re~~q~~Ld~~y~~F~~~Va~~R 255 (330)
T PRK11778 226 GENTEEGREKFREELEETHQLFKDFVQRYR 255 (330)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345666655566666555555566655554
No 148
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=25.27 E-value=2e+02 Score=28.35 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCc----hhHHHHHHHhCCEEe
Q psy17074 55 DAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPE----EDLKRTMKACGGAVM 118 (632)
Q Consensus 55 ~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~----~~l~~ia~~tGa~ii 118 (632)
+.|.+++.+.++.+.+...++.|+=.....+++....++|...+-++.. ..+-.++.-.|+.++
T Consensus 53 ~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~g~~~ind~~~~~~~~~~~~l~a~~~~~vV 120 (210)
T PF00809_consen 53 EEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKAGADIINDISGFEDDPEMLPLAAEYGAPVV 120 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHTSSEEEETTTTSSSTTHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHcCcceEEecccccccchhhhhhhcCCCEEE
Confidence 4677788888888887555666666667777777777777777766644 235555555677655
No 149
>PF14876 RSF: Respiratory growth transcriptional regulator
Probab=24.89 E-value=82 Score=32.00 Aligned_cols=67 Identities=12% Similarity=0.167 Sum_probs=37.0
Q ss_pred ccccHHHHHHHHHHHHHHHHhhhhccccccceEEecCHHHHHHHHH-HHHHHHHHHHHHHHHcCCcEEEE
Q psy17074 10 AHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVD-AEWKILYEKLDKIHASGAQVVLS 78 (632)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~E~~~i~~~~~~i~~~g~~lvi~ 78 (632)
+|+.|--.|-|+||+| |++.-.-|+.+|...+.-.. .|-+.+++ +-+..+-++++.++++..+.-+.
T Consensus 249 kplVEs~ak~kekk~k-~~~d~~~n~~etg~s~~n~q-~qqqn~~elqskiamndlie~lidl~ipfsvl 316 (374)
T PF14876_consen 249 KPLVESDAKFKEKKRK-RKEDINRNHPETGQSFINHQ-EQQQNIRELQSKIAMNDLIENLIDLNIPFSVL 316 (374)
T ss_pred hcccCchhhhhHHhhh-hcccccCCCccchhhHHHHH-HHHHHHHHHHHHHhHHHHHHHHHhcCCcceee
Confidence 5666655554444333 33334445555544443333 33344444 55667778888888888876443
No 150
>COG1526 FdhD Uncharacterized protein required for formate dehydrogenase activity [Energy production and conversion]
Probab=24.37 E-value=1.2e+02 Score=31.37 Aligned_cols=43 Identities=16% Similarity=0.105 Sum_probs=38.6
Q ss_pred HHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchh
Q psy17074 545 EKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEED 587 (632)
Q Consensus 545 ~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~ 587 (632)
+++.+.+..|+|+|++-......+.....+.||+.|..++-..
T Consensus 212 EmV~Kaa~~Gipil~S~SAPT~Lai~~Ae~~~iTLvgf~R~~~ 254 (266)
T COG1526 212 EMVQKAAMAGIPILASVSAPTSLAIEAAERLGLTLVGFVRGGR 254 (266)
T ss_pred HHHHHHHHhCCcEEEEcccchHHHHHHHHHcCCEEEEEecCCc
Confidence 4599999999999999999999999999999999998886543
No 151
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=23.10 E-value=2.2e+02 Score=24.44 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=28.6
Q ss_pred cCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhH
Q psy17074 553 SGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL 588 (632)
Q Consensus 553 ~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L 588 (632)
.++++|||. +|.+.+...|.++||-+++......+
T Consensus 64 ~~~~vvi~~-~iG~~a~~~L~~~GI~v~~~~~~~~v 98 (106)
T cd00852 64 SDCDAVLCA-KIGDEPKEKLEEAGIEVIEAYAGEYI 98 (106)
T ss_pred cCCcEEeeh-hhCccHHHHHHHCCCEEEEecCcCcH
Confidence 689999885 89999999999999999976553333
No 152
>PF02634 FdhD-NarQ: FdhD/NarQ family; InterPro: IPR003786 Formate dehydrogenase is required for nitrate inducible formate dehydrogenase activity. In Wolinella succinogenes it is a membranous molybdo-enzyme which is involved in phosphorylative electron transport. The functional formate dehydrogenase may be made up of three or four different subunits []. In Escherichia coli, FdhD is required for the formation of active formate dehydrogenases.; GO: 0008863 formate dehydrogenase (NAD+) activity, 0009326 formate dehydrogenase complex; PDB: 2PW9_D.
Probab=23.10 E-value=79 Score=31.91 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCc
Q psy17074 545 EKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPE 585 (632)
Q Consensus 545 ~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~ 585 (632)
+++.+.+..|+++|++-..-...+.++..++||+.+..++.
T Consensus 183 emv~Ka~~aGipvivS~sapT~~av~~A~~~gitLigf~R~ 223 (236)
T PF02634_consen 183 EMVQKAARAGIPVIVSRSAPTSLAVELARKLGITLIGFARG 223 (236)
T ss_dssp HHHHHHHHHT-SEEEESS-B-HHHHHHHHHHT-EEEEEEET
T ss_pred HHHHHHHHcCCCEEEEcccccHHHHHHHHHhCCEEEEEecC
Confidence 45899999999999999999999999999999998877754
No 153
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=22.68 E-value=2.4e+02 Score=24.16 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=27.0
Q ss_pred cCCcEEEEecCcChhHHHHHHHCCceEEEeCC
Q psy17074 71 SGAQVVLSKLPIGDVATQYFADRDMFCAGRVP 102 (632)
Q Consensus 71 ~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~ 102 (632)
.+|++||+. +|.+.+...|.++||-++.--.
T Consensus 64 ~~~~vvi~~-~iG~~a~~~L~~~GI~v~~~~~ 94 (106)
T cd00852 64 SDCDAVLCA-KIGDEPKEKLEEAGIEVIEAYA 94 (106)
T ss_pred cCCcEEeeh-hhCccHHHHHHHCCCEEEEecC
Confidence 699999887 7999999999999999985544
No 154
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=22.63 E-value=2.8e+02 Score=23.85 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=36.6
Q ss_pred HHHHHHhcCCcEEEEeCCccHHHHH----HHHHCCcEEEecC-CchhHHHHHHHcCCe
Q psy17074 546 KLDKIHASGAQVVLSKLPIGDVATQ----YFADRDMFCAGRV-PEEDLKRTMKACGGA 598 (632)
Q Consensus 546 ~v~~i~~~gv~vvi~~~~I~~~al~----~L~~~~I~~v~~v-~~~~L~rIa~~tGa~ 598 (632)
.++.+.+..+.+||++.+.++.... ++..++|.++..+ ++. .|.+++|-.
T Consensus 24 v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~---eLG~a~Gk~ 78 (99)
T PRK01018 24 TIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSV---ELGTLCGKP 78 (99)
T ss_pred HHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHH---HHHHHhCCC
Confidence 4666777789999999999776544 5567899998874 554 467777743
No 155
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=22.38 E-value=2.8e+02 Score=24.18 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=36.0
Q ss_pred HHHHHHHcCCcEEEEecCcChhHHHHH----HHCCceEEEeCCchhHHHHHHHhCCE
Q psy17074 64 KLDKIHASGAQVVLSKLPIGDVATQYF----ADRDMFCAGRVPEEDLKRTMKACGGA 116 (632)
Q Consensus 64 ~~~~i~~~g~~lvi~~~~I~~~al~~l----~~~~I~~~~~v~~~~l~~ia~~tGa~ 116 (632)
..+.|..-++.+||.+.+.++....-+ ..+++|++....+ +.|..++|-.
T Consensus 25 v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~---~eLg~a~Gk~ 78 (104)
T PRK05583 25 CEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSK---EELGNAIGRD 78 (104)
T ss_pred HHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCH---HHHHHHhCCC
Confidence 355666677999999999988765544 5579999887665 4466677743
No 156
>COG1526 FdhD Uncharacterized protein required for formate dehydrogenase activity [Energy production and conversion]
Probab=22.23 E-value=1.3e+02 Score=31.01 Aligned_cols=42 Identities=17% Similarity=0.110 Sum_probs=31.4
Q ss_pred HHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCch
Q psy17074 63 EKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEE 104 (632)
Q Consensus 63 ~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~ 104 (632)
+++.|.+..|+|+|++-......|.+...+.||..++.++-.
T Consensus 212 EmV~Kaa~~Gipil~S~SAPT~Lai~~Ae~~~iTLvgf~R~~ 253 (266)
T COG1526 212 EMVQKAAMAGIPILASVSAPTSLAIEAAERLGLTLVGFVRGG 253 (266)
T ss_pred HHHHHHHHhCCcEEEEcccchHHHHHHHHHcCCEEEEEecCC
Confidence 457777777888888877778888888888888777766544
No 157
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=21.89 E-value=2.8e+02 Score=29.42 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCCcEEEEecCcC-hhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEE
Q psy17074 61 LYEKLDKIHASGAQVVLSKLPIG-DVATQYFADRDMFCAGRVPEEDLKRTMKACGGAV 117 (632)
Q Consensus 61 i~~~~~~i~~~g~~lvi~~~~I~-~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~i 117 (632)
....++.+.+.++++|.+.-+.. +...+.+..+|+.++..+..-..-+.+...|+..
T Consensus 102 ~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D~ 159 (330)
T PF03060_consen 102 FEEQLDVALEAKPDVVSFGFGLPPPEVIERLHAAGIKVIPQVTSVREARKAAKAGADA 159 (330)
T ss_dssp HHHHHHHHHHS--SEEEEESSSC-HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SE
T ss_pred cccccccccccceEEEEeecccchHHHHHHHHHcCCccccccCCHHHHHHhhhcCCCE
Confidence 56678888888999999988887 8889999999999999887666556666677533
No 158
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=21.62 E-value=2.4e+02 Score=24.45 Aligned_cols=37 Identities=11% Similarity=0.035 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEE
Q psy17074 63 EKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAG 99 (632)
Q Consensus 63 ~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~ 99 (632)
.-.|.++..+++|||......+.....+.+.|++++.
T Consensus 52 ~~~E~l~~l~pDlvi~~~~~~~~~~~~l~~~~i~~~~ 88 (148)
T cd00636 52 PNLEKIAALKPDLIIANGSGLEAWLDKLSKIAIPVVV 88 (148)
T ss_pred CCHHHHhccCCCEEEEecccchhHHHHHHHhCCCEEE
Confidence 3478888899999999987766677788888876654
No 159
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=21.54 E-value=2.1e+02 Score=28.96 Aligned_cols=52 Identities=13% Similarity=0.037 Sum_probs=37.9
Q ss_pred HHHHHhcCCcEEEEeCC-ccHHHHHHHHHCCcEEEecC--C----chhHHHHHHHcCCe
Q psy17074 547 LDKIHASGAQVVLSKLP-IGDVATQYFADRDMFCAGRV--P----EEDLKRTMKACGGA 598 (632)
Q Consensus 547 v~~i~~~gv~vvi~~~~-I~~~al~~L~~~~I~~v~~v--~----~~~L~rIa~~tGa~ 598 (632)
+|.|.+.+++|||...+ -.......|.+.||.++..- + ...++.+++++|-.
T Consensus 65 ~E~il~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~i~~lg~~~g~~ 123 (260)
T PRK03379 65 LERIVALKPDLVLAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQP 123 (260)
T ss_pred HHHHHhcCCCEEEEecCCCcHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHcCCH
Confidence 77888999999998654 34567788899998766542 2 34567788888854
No 160
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=21.50 E-value=2.8e+02 Score=30.92 Aligned_cols=45 Identities=22% Similarity=0.393 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCeE-EecCChhHHHHHHHHhhh
Q psy17074 166 EQFLEETERSLHDAIMIVRRTIRNHAV-VAGGGAIEMELSKALRDY 210 (632)
Q Consensus 166 ~~~l~E~~~~i~Dal~~~~~a~~~~~v-vpGGGa~e~~ls~~L~~~ 210 (632)
+..+++-+.++.++|.-.+..+...++ +.+||...+.+++.|.++
T Consensus 303 ~~~i~~e~~~~~~~l~~~~~~L~Gkrv~i~~g~~~~~~l~~~l~el 348 (456)
T TIGR01283 303 EELIAREEAKIRPALEPYRERLKGKKAAIYTGGVKSWSLVSALQDL 348 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHHHHC
Confidence 455667777899999999998887665 456777777888888654
No 161
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=21.48 E-value=1.1e+02 Score=27.63 Aligned_cols=45 Identities=7% Similarity=-0.016 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeCCc--cHHHHHHHHHCCcEEEecCC
Q psy17074 540 WKILYEKLDKIHASGAQVVLSKLPI--GDVATQYFADRDMFCAGRVP 584 (632)
Q Consensus 540 ~~~l~~~v~~i~~~gv~vvi~~~~I--~~~al~~L~~~~I~~v~~v~ 584 (632)
.+...+.++++.+.++|+||++.+. .+..+..+.++++.+++-..
T Consensus 67 ~~~r~~~l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~~ 113 (127)
T PF02603_consen 67 EEERKERLEKLFSYNPPCIIVTRGLEPPPELIELAEKYNIPLLRTPL 113 (127)
T ss_dssp HHHHCCHHHHHCTTT-S-EEEETTT---HHHHHHHHHCT--EEEESS
T ss_pred HHHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEcCC
Confidence 3345667899999999999999887 57888899999999887653
No 162
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=21.46 E-value=3e+02 Score=23.99 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=37.2
Q ss_pred HHHHHHhcCCcEEEEeCCccHHHHHHH----HHCCcEEEecCCchhHHHHHHHcCCeE
Q psy17074 546 KLDKIHASGAQVVLSKLPIGDVATQYF----ADRDMFCAGRVPEEDLKRTMKACGGAV 599 (632)
Q Consensus 546 ~v~~i~~~gv~vvi~~~~I~~~al~~L----~~~~I~~v~~v~~~~L~rIa~~tGa~i 599 (632)
..+.|.+-++.+||.+.|.++....-+ ..++|.++...+++ .|..++|-..
T Consensus 25 v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~---eLg~a~Gk~~ 79 (104)
T PRK05583 25 CEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKE---ELGNAIGRDE 79 (104)
T ss_pred HHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHH---HHHHHhCCCC
Confidence 356667777999999999988665544 45789888876664 4777788543
No 163
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=21.33 E-value=3.7e+02 Score=27.44 Aligned_cols=64 Identities=8% Similarity=0.039 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchh---HHHHHHHhCCEEec
Q psy17074 55 DAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEED---LKRTMKACGGAVMT 119 (632)
Q Consensus 55 ~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~---l~~ia~~tGa~ii~ 119 (632)
+.|.+.+.+.++.+.+. .++.++-...++.++....++|...+.+++... +-.++.-.|+.++-
T Consensus 57 ~~E~~rl~~~v~~~~~~-~~~plsiDT~~~~vi~~al~~G~~iINsis~~~~~~~~~l~~~~~~~vV~ 123 (257)
T TIGR01496 57 EEELNRVVPVIKALRDQ-PDVPISVDTYRAEVARAALEAGADIINDVSGGQDPAMLEVAAEYGVPLVL 123 (257)
T ss_pred HHHHHHHHHHHHHHHhc-CCCeEEEeCCCHHHHHHHHHcCCCEEEECCCCCCchhHHHHHHcCCcEEE
Confidence 44667788888877654 134456677788888877777888777776543 55555556666653
No 164
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=20.96 E-value=7.8e+02 Score=26.58 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCce-EEEeCCchhHHHHHHHhC
Q psy17074 58 WKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMF-CAGRVPEEDLKRTMKACG 114 (632)
Q Consensus 58 ~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~-~~~~v~~~~l~~ia~~tG 114 (632)
+-+++++++.+.+.|..+++...+-....+..+.+.+.. ++......+|....+..|
T Consensus 254 ~P~~k~i~~~i~~~g~~~ilh~cG~~~~~l~~l~~~g~~~v~~~~~~~dl~~ak~~~g 311 (378)
T cd03308 254 WPSFKKVVEGLAARGQRIFLFFEGDWERYLEYLQELPKGKTVGLFEYGDPKKVKEKLG 311 (378)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcHHHHHHHHhcCCCcEEEcCCCCCHHHHHHHhC
Confidence 557777777777777777766655555455556655443 222222245554444443
No 165
>PF02634 FdhD-NarQ: FdhD/NarQ family; InterPro: IPR003786 Formate dehydrogenase is required for nitrate inducible formate dehydrogenase activity. In Wolinella succinogenes it is a membranous molybdo-enzyme which is involved in phosphorylative electron transport. The functional formate dehydrogenase may be made up of three or four different subunits []. In Escherichia coli, FdhD is required for the formation of active formate dehydrogenases.; GO: 0008863 formate dehydrogenase (NAD+) activity, 0009326 formate dehydrogenase complex; PDB: 2PW9_D.
Probab=20.85 E-value=1.2e+02 Score=30.66 Aligned_cols=58 Identities=12% Similarity=0.038 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCCc----EEEEecCcChhHHHHHHHCCceEEEeCCc--hhHHHHHHHhCCEEe
Q psy17074 61 LYEKLDKIHASGAQ----VVLSKLPIGDVATQYFADRDMFCAGRVPE--EDLKRTMKACGGAVM 118 (632)
Q Consensus 61 i~~~~~~i~~~g~~----lvi~~~~I~~~al~~l~~~~I~~~~~v~~--~~l~~ia~~tGa~ii 118 (632)
+.+++-.....|.+ ++++.+-++-+...-..+.|||++-..+. .--=++|+..|-+++
T Consensus 155 ~DK~iG~~ll~g~~~~~~~l~~SGR~s~emv~Ka~~aGipvivS~sapT~~av~~A~~~gitLi 218 (236)
T PF02634_consen 155 LDKLIGAALLNGIDLSDKILLTSGRISSEMVQKAARAGIPVIVSRSAPTSLAVELARKLGITLI 218 (236)
T ss_dssp HHHHHHHHHT-TSS-SSSEEEESS-B-HHHHHHHHHHT-SEEEESS-B-HHHHHHHHHHT-EEE
T ss_pred HHHHHHHHHhCCCCccCcEEEEcCccCHHHHHHHHHcCCCEEEEcccccHHHHHHHHHhCCEEE
Confidence 34444444444443 56666666666666666666666644432 223355666666655
No 166
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.83 E-value=2e+02 Score=28.68 Aligned_cols=53 Identities=15% Similarity=0.050 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCcEEEEecCcCh-hHHHHHHH-CCceEEEeCC-------chhHHHHHHHhCC
Q psy17074 63 EKLDKIHASGAQVVLSKLPIGD-VATQYFAD-RDMFCAGRVP-------EEDLKRTMKACGG 115 (632)
Q Consensus 63 ~~~~~i~~~g~~lvi~~~~I~~-~al~~l~~-~~I~~~~~v~-------~~~l~~ia~~tGa 115 (632)
.-+|+|+++++||||....... .....|.+ .|||++.--. .+.++.++.++|-
T Consensus 65 ~n~E~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~ 126 (262)
T cd01147 65 PNYEKIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGGDSLEDTPEQIRLLGKVLGK 126 (262)
T ss_pred CCHHHHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEecCCchHhHHHHHHHHHHHhCC
Confidence 4589999999999999866554 24455554 8898764332 2336667777664
No 167
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=20.70 E-value=4.9e+02 Score=28.39 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCeE-EecCChhHHHHHHHHhhh
Q psy17074 166 EQFLEETERSLHDAIMIVRRTIRNHAV-VAGGGAIEMELSKALRDY 210 (632)
Q Consensus 166 ~~~l~E~~~~i~Dal~~~~~a~~~~~v-vpGGGa~e~~ls~~L~~~ 210 (632)
+..+++-+.++.+++.-.+..+...++ |.|++.-.+.+++.|.++
T Consensus 264 ~~~i~~e~~~~~~~l~~~~~~l~gkrv~i~~~~~~~~~la~~l~el 309 (410)
T cd01968 264 EELIAREEARLRPELAPYRARLEGKKAALYTGGVKSWSLVSALQDL 309 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCchHHHHHHHHHHC
Confidence 455666677889999999999887666 455555667777777654
No 168
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=20.66 E-value=2.8e+02 Score=23.59 Aligned_cols=31 Identities=10% Similarity=0.107 Sum_probs=27.1
Q ss_pred cCCcEEEEecCcChhHHHHHHHCCceEEEeCC
Q psy17074 71 SGAQVVLSKLPIGDVATQYFADRDMFCAGRVP 102 (632)
Q Consensus 71 ~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~ 102 (632)
.++++|||. +|.+.+...|.++||.++.-..
T Consensus 60 ~~~~vvi~~-~iG~~a~~~L~~~GI~v~~~~~ 90 (102)
T cd00853 60 EDCAILYCA-AIGGPAAARLVRAGIHPIKVPE 90 (102)
T ss_pred CCCcEEEEh-hcChhHHHHHHHcCCEEEEcCC
Confidence 589998887 7999999999999999996554
Done!