RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17074
(632 letters)
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, eta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 522
Score = 573 bits (1478), Expect = 0.0
Identities = 227/353 (64%), Positives = 260/353 (73%), Gaps = 53/353 (15%)
Query: 327 QILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGAT 386
I+LLKEGT+ SQGK QLISNINACQA+ DAVRTTLGPRGMDKLIVD GK TISNDGAT
Sbjct: 1 PIILLKEGTDTSQGKGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGAT 60
Query: 387 IMKLLDIVHPAAKTLVDIAKSQDA------------------------------------ 410
I+KLLDIVHPAAKTLVDIAKSQDA
Sbjct: 61 ILKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRG 120
Query: 411 -----------------EIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVM 453
I K D E R LLEKCAATAL+SKLI +K FF+KMVVDAV+
Sbjct: 121 YRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVL 180
Query: 454 SLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIEL 513
SLDD L L+MIGIKKV GG+LEDS LV+GV+FKKTF+YAGFE QPK +KNPKI LLN+EL
Sbjct: 181 SLDDDLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVEL 240
Query: 514 ELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFA 573
ELKAE+DNAE+R++ EEYQ +VDAEWKI+Y+KL+KI SGA VVLSKLPIGD+ATQYFA
Sbjct: 241 ELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFA 300
Query: 574 DRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
DRD+FCAGRVPEEDLKR +A GG++ TT ++ D VLGTC +F+ERQ+G ER
Sbjct: 301 DRDIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVGGER 353
Score = 339 bits (871), Expect = e-109
Identities = 126/178 (70%), Positives = 152/178 (85%), Gaps = 3/178 (1%)
Query: 37 KKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADR 93
K E++ E E+P+EYQ +VDAEWKI+Y+KL+KI SGA VVLSKLPIGD+ATQYFADR
Sbjct: 243 KAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADR 302
Query: 94 DMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKN 153
D+FCAGRVPEEDLKR +A GG++ TT ++ D VLGTC +F+ERQ+G ER+N+F+GC
Sbjct: 303 DIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCPK 362
Query: 154 ARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
A+TCTII+RGGAEQF+EE ERSLHDAIMIVRR I+N +VVAGGGAIEMELSK LRDYS
Sbjct: 363 AKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYS 420
Score = 180 bits (458), Expect = 1e-49
Identities = 63/83 (75%), Positives = 74/83 (89%)
Query: 234 GFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHA 293
GFE QPK +KNPKI LLN+ELELKAE+DNAE+R++ EEYQ +VDAEWKI+Y+KL+KI
Sbjct: 220 GFEQQPKKFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVK 279
Query: 294 SGAQVVLSKLPIGDVATQYFADR 316
SGA VVLSKLPIGD+ATQYFADR
Sbjct: 280 SGANVVLSKLPIGDLATQYFADR 302
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit. Members
of this family, all eukaryotic, are part of the group II
chaperonin complex called CCT (chaperonin containing
TCP-1) or TRiC. The archaeal equivalent group II
chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
eta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 523
Score = 494 bits (1274), Expect = e-170
Identities = 220/355 (61%), Positives = 260/355 (73%), Gaps = 53/355 (14%)
Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
+P I+LLKEGT+ SQGK QLISNINAC A+ +A++TTLGPRGMDKLIV NGK+T+SNDG
Sbjct: 1 RPTIVLLKEGTDTSQGKGQLISNINACVAIAEALKTTLGPRGMDKLIVGSNGKATVSNDG 60
Query: 385 ATIMKLLDIVHPAAKTLVDIAKSQD--------------AEIQKS--------------- 415
ATI+KLLDIVHPAAKTLVDIAKSQD E+ K
Sbjct: 61 ATILKLLDIVHPAAKTLVDIAKSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLII 120
Query: 416 -----------------------DSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAV 452
+ GE R LLEKCAATALSSKLI K FFSKM+VDAV
Sbjct: 121 RGYREALSLAIEKIKEIAVTIDSEKGEQRELLEKCAATALSSKLIAHNKEFFSKMIVDAV 180
Query: 453 MSLD-DLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511
+SLD D L L +IG+KKV GGALEDS+LV+GV+FKKTF+YAGFE QPK + NPKI LLN+
Sbjct: 181 LSLDRDDLDLKLIGVKKVQGGALEDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNV 240
Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQY 571
ELELKAE+DNAEIR++ VE+YQ +VDAEW I++EKL KI SGA +VLSKLPIGD+ATQY
Sbjct: 241 ELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFEKLRKIVESGANIVLSKLPIGDLATQY 300
Query: 572 FADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
FAD ++FCAGRV ED+KR +KACGG++ +T DL VLGTCA+F+ERQIGSER
Sbjct: 301 FADHNIFCAGRVSAEDMKRVIKACGGSIQSTTSDLEADVLGTCALFEERQIGSER 355
Score = 298 bits (764), Expect = 1e-93
Identities = 120/178 (67%), Positives = 148/178 (83%)
Query: 34 KKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADR 93
K +K E E+ ++YQ +VDAEW I++EKL KI SGA +VLSKLPIGD+ATQYFAD
Sbjct: 245 KAEKDNAEIRVEDVEDYQAIVDAEWAIIFEKLRKIVESGANIVLSKLPIGDLATQYFADH 304
Query: 94 DMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKN 153
++FCAGRV ED+KR +KACGG++ +T DL VLGTCA+F+ERQIGSER+N+F+GC +
Sbjct: 305 NIFCAGRVSAEDMKRVIKACGGSIQSTTSDLEADVLGTCALFEERQIGSERYNLFTGCPH 364
Query: 154 ARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
A+TCTII+RGGAEQF+EE ERSLHDAIMIVRR ++N +VAGGGAIEMELSK LRDYS
Sbjct: 365 AKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKNKKIVAGGGAIEMELSKCLRDYS 422
Score = 161 bits (410), Expect = 6e-43
Identities = 60/83 (72%), Positives = 71/83 (85%)
Query: 234 GFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHA 293
GFE QPK + NPKI LLN+ELELKAE+DNAEIR++ VE+YQ +VDAEW I++EKL KI
Sbjct: 222 GFEQQPKKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFEKLRKIVE 281
Query: 294 SGAQVVLSKLPIGDVATQYFADR 316
SGA +VLSKLPIGD+ATQYFAD
Sbjct: 282 SGANIVLSKLPIGDLATQYFADH 304
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type
II. Chaperonins are involved in productive folding of
proteins. They share a common general morphology, a
double toroid of 2 stacked rings, each composed of 7-9
subunits. There are 2 main chaperonin groups. The
symmetry of type I is seven-fold and they are found in
eubacteria (GroEL) and in organelles of eubacterial
descent (hsp60 and RBP). The symmetry of type II is
eight- or nine-fold and they are found in archea
(thermosome), thermophilic bacteria (TF55) and in the
eukaryotic cytosol (CTT). Their common function is to
sequester nonnative proteins inside their central cavity
and promote folding by using energy derived from ATP
hydrolysis.
Length = 464
Score = 228 bits (583), Expect = 7e-68
Identities = 108/346 (31%), Positives = 158/346 (45%), Gaps = 96/346 (27%)
Query: 335 TENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIV 394
E G+ +SNINA +A+ DAV+TTLGP+GMDK++VD G TI+NDGATI+K +++
Sbjct: 1 KEREFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVE 60
Query: 395 HPAAKTLVDIAKSQDAEI---------------QKSDSGEYRGL--------LEKCAATA 431
HPAAK LV++AKSQD E+ ++++ G+ EK A
Sbjct: 61 HPAAKLLVEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKA 120
Query: 432 L--------------------------SSKLIHQQKGFFSKMVVDAVMSLDDL---LPLN 462
L +SKL+ F ++VVDAV+ + + L
Sbjct: 121 LEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGDVDLG 180
Query: 463 MIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNA 522
+I ++K GG+LEDS LV G+ F K + PK +N KI LL+ +LE
Sbjct: 181 VIRVEKKKGGSLEDSELVVGMVFDKGYLSPYM---PKRLENAKILLLDCKLE-------- 229
Query: 523 EIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGR 582
VV+++ I D A Y A + R
Sbjct: 230 ---------------------------------YVVIAEKGIDDEALHYLAKLGIMAVRR 256
Query: 583 VPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDT 628
V +EDL+R KA G +++ DL LGT + +E +IG E+ T
Sbjct: 257 VRKEDLERIAKATGATIVSRLEDLTPEDLGTAGLVEETKIGDEKYT 302
Score = 167 bits (426), Expect = 2e-45
Identities = 56/138 (40%), Positives = 81/138 (58%)
Query: 74 QVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCA 133
VV+++ I D A Y A + RV +EDL+R KA G +++ DL LGT
Sbjct: 230 YVVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLEDLTPEDLGTAG 289
Query: 134 VFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVV 193
+ +E +IG E++ GCK + TI++RG E L+E ERSLHDA+ VR + + +V
Sbjct: 290 LVEETKIGDEKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIV 349
Query: 194 AGGGAIEMELSKALRDYS 211
GGGA E+ELSKAL + +
Sbjct: 350 PGGGAAEIELSKALEELA 367
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family. Chaperonins are involved
in productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
Archaeal cpn60 (thermosome), together with TF55 from
thermophilic bacteria and the eukaryotic cytosol
chaperonin (CTT), belong to the type II group of
chaperonins. Cpn60 consists of two stacked octameric
rings, which are composed of one or two different
subunits. Their common function is to sequester
nonnative proteins inside their central cavity and
promote folding by using energy derived from ATP
hydrolysis.
Length = 517
Score = 219 bits (559), Expect = 8e-64
Identities = 118/354 (33%), Positives = 181/354 (51%), Gaps = 58/354 (16%)
Query: 328 ILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATI 387
+L+LKEGT+ + G+ NI A +AV +AVRTTLGP+GMDK++VD G TI+NDGATI
Sbjct: 1 VLILKEGTQRTSGRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATI 60
Query: 388 MKLLDIVHPAAKTLVDIAKSQDAE------------------------------------ 411
+K +DI HPAAK LV++AK+QD E
Sbjct: 61 LKEMDIEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGY 120
Query: 412 -------------IQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL 458
I + + L K A T+L+ K K + +VVDAV+ + +
Sbjct: 121 RLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEK 180
Query: 459 LP------LNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIE 512
L+ I I+K GG+++D+ L+ G+ K + G PK +N KIALL+
Sbjct: 181 RDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGM---PKRVENAKIALLDAP 237
Query: 513 LELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYF 572
LE+K +A+IR+ S ++ Q ++ E +L E +DKI +GA VV + I D+A Y
Sbjct: 238 LEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYL 297
Query: 573 ADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
A + RV + D+++ +A G ++T DL LG + +ER++G ++
Sbjct: 298 AKAGILAVRRVKKSDMEKLARATGAKIVTNIDDLTPEDLGEAELVEERKVGDDK 351
Score = 140 bits (355), Expect = 1e-35
Identities = 62/164 (37%), Positives = 98/164 (59%)
Query: 47 PDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL 106
PD+ Q ++ E +L E +DKI +GA VV + I D+A Y A + RV + D+
Sbjct: 254 PDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDM 313
Query: 107 KRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAE 166
++ +A G ++T DL LG + +ER++G ++ GCKN + TI++RGG E
Sbjct: 314 EKLARATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNPKAVTILLRGGTE 373
Query: 167 QFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDY 210
++E ER+L DA+ +V + + VVAGGGA+E+EL+K LR+Y
Sbjct: 374 HVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREY 417
Score = 65.4 bits (160), Expect = 4e-11
Identities = 31/78 (39%), Positives = 46/78 (58%)
Query: 239 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV 298
PK +N KIALL+ LE+K +A+IR+ S ++ Q ++ E +L E +DKI +GA V
Sbjct: 223 PKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANV 282
Query: 299 VLSKLPIGDVATQYFADR 316
V + I D+A Y A
Sbjct: 283 VFCQKGIDDLAQHYLAKA 300
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. This family
includes members from the HSP60 chaperone family and the
TCP-1 (T-complex protein) family.
Length = 481
Score = 215 bits (549), Expect = 1e-62
Identities = 108/326 (33%), Positives = 164/326 (50%), Gaps = 58/326 (17%)
Query: 354 VVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEIQ 413
+ DAV+TTLGP+G +K++V+ GK TI+NDGATI+K ++I HPAAK LV+ AKSQD E+
Sbjct: 1 LADAVKTTLGPKGRNKMLVNHGGKITITNDGATILKEIEIQHPAAKLLVEAAKSQDEEV- 59
Query: 414 KSD--------SGE---------------------YRGLLEKC----------------- 427
D +GE Y LE
Sbjct: 60 -GDGTTTAVVLAGELLEEAEKLIEAGIHPTDIIRGYELALEIALKALEELSIPVSDDDED 118
Query: 428 ----AATALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGV 483
A T+L+SK+ ++ K+VVDAV+ + + + IG+ K+ GG+LEDS L++G+
Sbjct: 119 LLNVARTSLNSKISSRESELLGKLVVDAVLLIIEKFDVGNIGVIKIEGGSLEDSELIEGI 178
Query: 484 SFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKIL 543
K + PK +NPKI LL+ LE + + +E ++AE K L
Sbjct: 179 VLDKGYLS---PDMPKRLENPKILLLDCPLEYEKTEKVIISTAEELERL---LEAEEKQL 232
Query: 544 YEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTA 603
L+KI +G +V+ + I D+A + A + RV +EDL+R KA G V+++
Sbjct: 233 LPLLEKIVDAGVNLVIIQKGIDDLALHFLAKNGILALRRVKKEDLERLAKATGATVVSSL 292
Query: 604 HDLNDSVLGTCAVFDERQIGSERDTL 629
DL LG+ +ER+IG ++ T
Sbjct: 293 DDLEPDELGSAGKVEEREIGEDKTTF 318
Score = 158 bits (401), Expect = 6e-42
Identities = 61/176 (34%), Positives = 104/176 (59%)
Query: 36 KKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM 95
+K E+ +E +++++AE K L L+KI +G +V+ + I D+A + A +
Sbjct: 207 YEKTEKVIISTAEELERLLEAEEKQLLPLLEKIVDAGVNLVIIQKGIDDLALHFLAKNGI 266
Query: 96 FCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNAR 155
RV +EDL+R KA G V+++ DL LG+ +ER+IG ++ GC + +
Sbjct: 267 LALRRVKKEDLERLAKATGATVVSSLDDLEPDELGSAGKVEEREIGEDKTTFIEGCLSGK 326
Query: 156 TCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
TI++RG + L+E ER++ DA+ V+ +++ VV GGGA E+ELS+ALR+Y+
Sbjct: 327 VATILLRGATDHELDELERAIEDALNAVKAALKDEGVVPGGGAAELELSRALREYA 382
Score = 60.3 bits (147), Expect = 1e-09
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
PK +NPKI LL+ LE + + +E ++AE K L L+KI +G
Sbjct: 189 MPKRLENPKILLLDCPLEYEKTEKVIISTAEELERL---LEAEEKQLLPLLEKIVDAGVN 245
Query: 298 VVLSKLPIGDVATQYFADR 316
+V+ + I D+A + A
Sbjct: 246 LVIIQKGIDDLALHFLAKN 264
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal.
Thermosome is the name given to the archaeal rather
than eukaryotic form of the group II chaperonin
(counterpart to the group I chaperonin, GroEL/GroES, in
bacterial), a torroidal, ATP-dependent molecular
chaperone that assists in the folding or refolding of
nascent or denatured proteins. Various homologous
subunits, one to five per archaeal genome, may be
designated alpha, beta, etc., but phylogenetic analysis
does not show distinct alpha subunit and beta subunit
lineages traceable to ancient paralogs [Protein fate,
Protein folding and stabilization].
Length = 519
Score = 204 bits (522), Expect = 1e-58
Identities = 122/356 (34%), Positives = 192/356 (53%), Gaps = 60/356 (16%)
Query: 328 ILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATI 387
+ +LKEGT+ ++G+ +NI A +AV +AV++TLGPRGMDK++VD G TI+NDGATI
Sbjct: 2 VFILKEGTQRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATI 61
Query: 388 MKLLDIVHPAAKTLVDIAKSQDAE------------------------------------ 411
+K +DI HPAAK LV++AK+QD E
Sbjct: 62 LKEMDIEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLEQDIHPTVIIEGY 121
Query: 412 -------------IQKSDSGEYRGLLEKCAATALSSKLIHQQ-KGFFSKMVVDAVMSLDD 457
I S E R LL+K A T+L+SK + K + +VV+AV + +
Sbjct: 122 RKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTSKASAEVAKDKLANLVVEAVKQVAE 181
Query: 458 L-------LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLN 510
L + L+ I I K GG+++D+ LV+G+ K + G PK +N KIALL+
Sbjct: 182 LRGDGKYYVDLDNIKIVKKTGGSIDDTELVEGIVVDKEVVHPGM---PKRVENAKIALLD 238
Query: 511 IELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQ 570
LE++ +AEIR+ ++ QK +D E +L E +DKI +GA VV+ + I DVA
Sbjct: 239 APLEVEKTEIDAEIRITDPDQIQKFLDQEEAMLKEMVDKIADAGANVVICQKGIDDVAQH 298
Query: 571 YFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
Y A + RV + D+++ +A G ++++ ++ +S LG + +ER++G ++
Sbjct: 299 YLAKAGILAVRRVKKSDIEKLARATGARIVSSIDEITESDLGYAGLVEERKVGEDK 354
Score = 139 bits (352), Expect = 4e-35
Identities = 62/167 (37%), Positives = 103/167 (61%)
Query: 45 EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEE 104
+PD+ QK +D E +L E +DKI +GA VV+ + I DVA Y A + RV +
Sbjct: 255 TDPDQIQKFLDQEEAMLKEMVDKIADAGANVVICQKGIDDVAQHYLAKAGILAVRRVKKS 314
Query: 105 DLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGG 164
D+++ +A G ++++ ++ +S LG + +ER++G ++ GCKN + TI++RGG
Sbjct: 315 DIEKLARATGARIVSSIDEITESDLGYAGLVEERKVGEDKMVFVEGCKNPKAVTILLRGG 374
Query: 165 AEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
E ++E ERSL DA+ +V + + VVAGGGA+E+E++ LR Y+
Sbjct: 375 TEHVVDELERSLQDALHVVASALEDGKVVAGGGAVEIEIALRLRSYA 421
Score = 64.3 bits (157), Expect = 9e-11
Identities = 33/78 (42%), Positives = 47/78 (60%)
Query: 239 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV 298
PK +N KIALL+ LE++ +AEIR+ ++ QK +D E +L E +DKI +GA V
Sbjct: 226 PKRVENAKIALLDAPLEVEKTEIDAEIRITDPDQIQKFLDQEEAMLKEMVDKIADAGANV 285
Query: 299 VLSKLPIGDVATQYFADR 316
V+ + I DVA Y A
Sbjct: 286 VICQKGIDDVAQHYLAKA 303
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational
modification, protein turnover, chaperones].
Length = 524
Score = 183 bits (468), Expect = 6e-51
Identities = 94/354 (26%), Positives = 151/354 (42%), Gaps = 67/354 (18%)
Query: 332 KEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLL 391
G E G+ SNI A +A+ DAV+TTLGP+G +K++VD G TI+NDG TI+K +
Sbjct: 1 MMGKERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEI 60
Query: 392 DIVHP-----------------------------------------------------AA 398
++ HP A
Sbjct: 61 ELEHPGAKLLVEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAV 120
Query: 399 KTLVDIAKSQDAEIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL-DD 457
+ V+ K + S+ K A T+++SK + + ++VV+AV + +
Sbjct: 121 EKAVEELKEIAKPVSDSE------EELKIAITSVASKSANSDE-EIGELVVEAVEKVGKE 173
Query: 458 LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKA 517
L+ I I K +GG+ + +V+G+ F K + + + M K +NPKI LL+ +LE+K
Sbjct: 174 QSDLDGIIIVKESGGSETELEVVEGMVFDKGYL-SPYFMPDKRLENPKILLLDKKLEIKK 232
Query: 518 ERDNAEIRLDSVEEYQKVVDAEWK-ILYEKLDKIHASGA-QVVLSKLPIGDVATQYFADR 575
EI + S + + + E L + I GA VV+ I D+A Y D
Sbjct: 233 PELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDI 292
Query: 576 DMFCAGRVPEEDLKRTM-KACGGAVMTTAHDLNDSVLGT--CAVFDERQIGSER 626
+ RV +EDL + K G +++ DL VLG + +E + G
Sbjct: 293 AILTGRRVKKEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYD 346
Score = 134 bits (340), Expect = 1e-33
Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 45 EEPDEYQKVVDAEWK-ILYEKLDKIHASGA-QVVLSKLPIGDVATQYFADRDMFCAGRVP 102
+ + E L + I GA VV+ I D+A Y D + RV
Sbjct: 242 SSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVK 301
Query: 103 EEDLKRTM-KACGGAVMTTAHDLNDSVLGT--CAVFDERQIGSERFNVFSGCKN--ARTC 157
+EDL + K G +++ DL VLG + +E + G K
Sbjct: 302 KEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVA 361
Query: 158 TIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
TI+VRG E L+E ER + DA+ +VR + +V GGGA E+E + LR+Y+
Sbjct: 362 TILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYA 415
Score = 61.5 bits (150), Expect = 6e-10
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 237 MQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWK-ILYEKLDKIHASG 295
M K +NPKI LL+ +LE+K EI + S + + + E L + I G
Sbjct: 211 MPDKRLENPKILLLDKKLEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGG 270
Query: 296 A-QVVLSKLPIGDVATQYFAD 315
A VV+ I D+A Y D
Sbjct: 271 ANVVVVKAPGIDDLAKAYLED 291
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional.
Length = 533
Score = 159 bits (403), Expect = 5e-42
Identities = 106/359 (29%), Positives = 170/359 (47%), Gaps = 64/359 (17%)
Query: 326 PQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIV-----DQNGKSTI 380
PQ+L K+G + +G+ + + AV D V+TTLGP+GMDK++ ++G T+
Sbjct: 8 PQVL--KQGAQEEKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTV 65
Query: 381 SNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI---------------------------- 412
+NDGATI+K + + +PAAK LVDI+K+QD E+
Sbjct: 66 TNDGATILKSVWLDNPAAKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHP 125
Query: 413 ------------------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMV 448
SD +++ L A T LSSKL+ +K F+K+
Sbjct: 126 QTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKDHFAKLA 185
Query: 449 VDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIAL 508
VDAV+ L L+ I I K GG L DS L DG +K QPK +N KI +
Sbjct: 186 VDAVLRLKGSGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGVG----QPKRLENCKILV 241
Query: 509 LNIELEL-KAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDV 567
N ++ K + A++++DS+E+ ++ AE + + K+DKI A G V +++ I +
Sbjct: 242 ANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNY 301
Query: 568 ATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
Q FA+ + + ++R A G +++T LG C + +E IG ++
Sbjct: 302 PEQLFAEAGIMAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDK 360
Score = 106 bits (267), Expect = 3e-24
Identities = 50/159 (31%), Positives = 86/159 (54%)
Query: 48 DEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK 107
++ ++ AE + + K+DKI A G V +++ I + Q FA+ + + ++
Sbjct: 264 EKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHADFDGME 323
Query: 108 RTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQ 167
R A G +++T LG C + +E IG ++ FSGC CTI++RG +
Sbjct: 324 RLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAKGEACTIVLRGASTH 383
Query: 168 FLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKA 206
L+E ERSLHDA+ ++ +T+++ VV GGG EM ++ A
Sbjct: 384 ILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANA 422
Score = 39.2 bits (92), Expect = 0.006
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 238 QPKTYKNPKIALLNIELEL-KAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGA 296
QPK +N KI + N ++ K + A++++DS+E+ ++ AE + + K+DKI A G
Sbjct: 230 QPKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGC 289
Query: 297 QVVLSKLPIGDVATQYFADR 316
V +++ I + Q FA+
Sbjct: 290 NVFINRQLIYNYPEQLFAEA 309
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin
family, epsilon subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 526
Score = 158 bits (402), Expect = 8e-42
Identities = 93/337 (27%), Positives = 161/337 (47%), Gaps = 58/337 (17%)
Query: 346 SNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIA 405
S+I A ++V + +RT+LGPRGMDK++V +G+ T++NDGATI++ +D+ H AK LV+++
Sbjct: 27 SHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVELS 86
Query: 406 KSQDAEI---------------------------------------------------QK 414
KSQD EI +
Sbjct: 87 KSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKI 146
Query: 415 SDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL----LPLNMIGIKKVA 470
S + + L + A T+L SK++ + F+++ VDAV+S+ DL + +I ++
Sbjct: 147 EFSPDNKEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKV 206
Query: 471 GGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVE 530
GG LED+ LV G+ K F++ PK K+ KIA+L E + ++ + SVE
Sbjct: 207 GGRLEDTKLVKGIVIDKDFSHPQM---PKEVKDAKIAILTCPFEPPKPKTKHKLDITSVE 263
Query: 531 EYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKR 590
+Y+K+ + E K E ++++ +GA +V+ + D A + V +++
Sbjct: 264 DYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIEL 323
Query: 591 TMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERD 627
A GG ++ DL+ LG + E G+ +D
Sbjct: 324 IAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKD 360
Score = 88.9 bits (221), Expect = 2e-18
Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 5/175 (2%)
Query: 47 PDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL 106
++Y+K+ + E K E ++++ +GA +V+ + D A + V ++
Sbjct: 262 VEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEI 321
Query: 107 KRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGS--ERFNVFSGCKNARTCTIIVRGG 164
+ A GG ++ DL+ LG + E G+ ++ V GC N++ TI +RGG
Sbjct: 322 ELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKAVTIFIRGG 381
Query: 165 AEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRT 219
+ +EE +RSLHDA+ +VR IR++ +V GGGA E+ S A+ + DK
Sbjct: 382 NKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAA---DKCSG 433
Score = 39.2 bits (92), Expect = 0.006
Identities = 19/62 (30%), Positives = 36/62 (58%)
Query: 239 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV 298
PK K+ KIA+L E + ++ + SVE+Y+K+ + E K E ++++ +GA +
Sbjct: 231 PKEVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANL 290
Query: 299 VL 300
V+
Sbjct: 291 VI 292
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, beta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 517
Score = 150 bits (381), Expect = 4e-39
Identities = 103/351 (29%), Positives = 165/351 (47%), Gaps = 59/351 (16%)
Query: 331 LKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLI--VDQNGKSTISNDGATIM 388
LK+G + +G+ +S+ A+ D V+TTLGP+GMDK++ V ++G T++NDGATI+
Sbjct: 2 LKDGAQEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATIL 61
Query: 389 KLLDIVHPAAKTLVDIAKSQDAEI------------------------------------ 412
K + + +PAAK LVDI+K QD E+
Sbjct: 62 KSIGVDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYR 121
Query: 413 ----------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLD 456
SD +R L A T LSSK++ Q K F+++ VDAV+ L
Sbjct: 122 MATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLK 181
Query: 457 DLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELEL- 515
L+ I I K GG+L+DS L +G K QPK +N KI + N ++
Sbjct: 182 GSGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGVN----QPKRIENAKILIANTPMDTD 237
Query: 516 KAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADR 575
K + A++R+DS + ++ +AE + + K++KI G +++ I + Q FAD
Sbjct: 238 KIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADA 297
Query: 576 DMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
+ + ++R GG + +T LGTC + +E IG ++
Sbjct: 298 GIMAIEHADFDGVERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIGEDK 348
Score = 100 bits (251), Expect = 3e-22
Identities = 50/161 (31%), Positives = 88/161 (54%)
Query: 51 QKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTM 110
++ +AE + + K++KI G +++ I + Q FAD + + ++R
Sbjct: 255 AEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLA 314
Query: 111 KACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLE 170
GG + +T LGTC + +E IG ++ FSG CTI++RG ++Q L+
Sbjct: 315 LVTGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQQILD 374
Query: 171 ETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
E ERSLHDA+ ++ +T+++ VV GGG EM ++KA+ + +
Sbjct: 375 EAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELA 415
Score = 37.7 bits (88), Expect = 0.017
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 238 QPKTYKNPKIALLNIELEL-KAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGA 296
QPK +N KI + N ++ K + A++R+DS + ++ +AE + + K++KI G
Sbjct: 218 QPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGI 277
Query: 297 QVVLSKLPIGDVATQYFAD 315
+++ I + Q FAD
Sbjct: 278 NCFINRQLIYNYPEQLFAD 296
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily. Chaperonins
are involved in productive folding of proteins. They
share a common general morphology, a double toroid of 2
stacked rings, each composed of 7-9 subunits. There are
2 main chaperonin groups. The symmetry of type I is
seven-fold and they are found in eubacteria (GroEL) and
in organelles of eubacterial descent (hsp60 and RBP).
The symmetry of type II is eight- or nine-fold and they
are found in archea (thermosome), thermophilic bacteria
(TF55) and in the eukaryotic cytosol (CTT). Their
common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. This superfamily
also contains related domains from Fab1-like
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases
that only contain the intermediate and apical domains.
Length = 209
Score = 139 bits (353), Expect = 6e-38
Identities = 66/211 (31%), Positives = 96/211 (45%), Gaps = 48/211 (22%)
Query: 421 RGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL---LPLNMIGIKKVAGGALEDS 477
R LL + A T+L+SKL F K+VVDAV+ + L +I ++K+ GG+LEDS
Sbjct: 1 RELLLQVATTSLNSKLSSWDD-FLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDS 59
Query: 478 LLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVD 537
LV GV F K +A PK +N KI LL+ LE
Sbjct: 60 ELVVGVVFDKGYASPYM---PKRLENAKILLLDCPLE----------------------- 93
Query: 538 AEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGG 597
VV+++ I D+A Y A + RV +EDL+R +A G
Sbjct: 94 ------------------YVVIAEKGIDDLALHYLAKAGIMAVRRVKKEDLERIARATGA 135
Query: 598 AVMTTAHDLNDSVLGTCAVFDERQIGSERDT 628
++++ DL LGT + +E +IG E+ T
Sbjct: 136 TIVSSLEDLTPEDLGTAELVEETKIGEEKLT 166
Score = 131 bits (333), Expect = 3e-35
Identities = 42/116 (36%), Positives = 65/116 (56%)
Query: 74 QVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCA 133
VV+++ I D+A Y A + RV +EDL+R +A G ++++ DL LGT
Sbjct: 94 YVVIAEKGIDDLALHYLAKAGIMAVRRVKKEDLERIARATGATIVSSLEDLTPEDLGTAE 153
Query: 134 VFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRN 189
+ +E +IG E+ GCK + TI++RG E L+E +RSLHDA+ VR +
Sbjct: 154 LVEETKIGEEKLTFIEGCKGGKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
epsilon chain (part of a paralogous family) from
animals, plants, fungi, and other eukaryotes.
Length = 532
Score = 141 bits (358), Expect = 6e-36
Identities = 97/361 (26%), Positives = 171/361 (47%), Gaps = 59/361 (16%)
Query: 323 FRQPQILLLKEGTENSQ-GKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTIS 381
+ +P I++ + + G SNI A ++V +RT+LGP+GMDK+++ +G T++
Sbjct: 7 YGRPFIIIKDQDNKKRLKGLEAKKSNIAAAKSVASILRTSLGPKGMDKMLISPDGDITVT 66
Query: 382 NDGATIMKLLDIVHPAAKTLVDIAKSQDAE----------------------IQK----- 414
NDGATI+ +D+ +P AK +V+++KSQD E + K
Sbjct: 67 NDGATILSQMDVDNPIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEQAEELLDKGIHPI 126
Query: 415 ------------------------SDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVD 450
S R L + A T+L SK++ + F+++ VD
Sbjct: 127 KIAEGFEEAARVAVEHLEEISDEISADNNNREPLIQAAKTSLGSKIVSKCHRRFAEIAVD 186
Query: 451 AVMSLDDL----LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKI 506
AV+++ D+ + ++I ++ GG+LED+ L+ G+ K F++ +M PK K+ KI
Sbjct: 187 AVLNVADMERRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHP--QM-PKEVKDAKI 243
Query: 507 ALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGD 566
A+L E + ++ + SVEEY+K+ E + E +D I SGA +V+ + D
Sbjct: 244 AILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFKEMIDDIKKSGANIVICQWGFDD 303
Query: 567 VATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
A D+ V ++L+ A GG ++ +L+ LG + E G+ +
Sbjct: 304 EANHLLLQNDLPAVRWVGGQELELIAIATGGRIVPRFQELSKDKLGKAGLVREISFGTTK 363
Query: 627 D 627
D
Sbjct: 364 D 364
Score = 94.9 bits (236), Expect = 2e-20
Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 2/163 (1%)
Query: 47 PDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL 106
+EY+K+ E + E +D I SGA +V+ + D A D+ V ++L
Sbjct: 266 VEEYKKLQKYEQQKFKEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGQEL 325
Query: 107 KRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGS--ERFNVFSGCKNARTCTIIVRGG 164
+ A GG ++ +L+ LG + E G+ +R V CKN++ TI +RGG
Sbjct: 326 ELIAIATGGRIVPRFQELSKDKLGKAGLVREISFGTTKDRMLVIEQCKNSKAVTIFIRGG 385
Query: 165 AEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKAL 207
+ +EE +RS+HDA+ +VR I++ +V GGGA E+ S A+
Sbjct: 386 NKMIIEEAKRSIHDALCVVRNLIKDSRIVYGGGAAEISCSLAV 428
Score = 36.3 bits (84), Expect = 0.045
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 239 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV 298
PK K+ KIA+L E + ++ + SVEEY+K+ E + E +D I SGA +
Sbjct: 235 PKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFKEMIDDIKKSGANI 294
Query: 299 VLSKLPIGDVA 309
V+ + D A
Sbjct: 295 VICQWGFDDEA 305
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
delta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 517
Score = 138 bits (350), Expect = 5e-35
Identities = 94/348 (27%), Positives = 157/348 (45%), Gaps = 71/348 (20%)
Query: 337 NSQGKPQLI--SNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIV 394
+ KPQ + SNI A +AV DA+RT+LGP+GMDK+I D G+ I+NDGATI+K + ++
Sbjct: 2 QDKDKPQDVRTSNIVAAKAVADAIRTSLGPKGMDKMIQDGKGEVIITNDGATILKQMAVL 61
Query: 395 HPAAKTLVDIAKSQDAE----------IQKSDSGEYRGLLEK------------------ 426
HPAAK LV+++K+QD E + + G LL K
Sbjct: 62 HPAAKMLVELSKAQDIEAGDGTTSVVILAGALLGACERLLNKGIHPTIISESFQSAADEA 121
Query: 427 ---------------------CAATALSSKLIHQQKGFFSKMVVDAVMSLDDL-----LP 460
A T+LSSK++ Q + + VDAV+ + D +
Sbjct: 122 IKILDEMSIPVDLSDREQLLKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENAKNVD 181
Query: 461 LNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELEL-KAER 519
LN I + K GG ++D+ L++G+ F + + + P + KI L+ ++ K +
Sbjct: 182 LNDIKVVKKLGGTIDDTELIEGLVFTQKASKS--AGGPTRIEKAKIGLIQFQISPPKTDM 239
Query: 520 DNAEIRLDSVEEYQ---KVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVATQY 571
+N I V +Y +V+ E + + KI +G V+L + I D+A +
Sbjct: 240 ENQII----VNDYAQMDRVLKEERAYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHF 295
Query: 572 FADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDE 619
A + + E+++ K G + + LG+ + +E
Sbjct: 296 LAKMKIMVVKDIEREEIEFICKTIGCKPIASIDHFTADKLGSAELVEE 343
Score = 78.3 bits (193), Expect = 3e-15
Identities = 43/166 (25%), Positives = 82/166 (49%), Gaps = 6/166 (3%)
Query: 52 KVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVATQYFADRDMFCAGRVPEEDL 106
+V+ E + + KI +G V+L + I D+A + A + + E++
Sbjct: 253 RVLKEERAYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEI 312
Query: 107 KRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNAR-TCTIIVRGGA 165
+ K G + + LG+ + +E + +G +NA T T++VRG
Sbjct: 313 EFICKTIGCKPIASIDHFTADKLGSAELVEEVDSDGGKIIKITGIQNAGKTVTVVVRGSN 372
Query: 166 EQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
+ ++E ERSLHDA+ ++R ++ ++AGGGA E+E+++ L Y+
Sbjct: 373 KLVIDEAERSLHDALCVIRCLVKKRGLIAGGGAPEIEIARRLSKYA 418
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin
family, alpha subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 527
Score = 138 bits (349), Expect = 1e-34
Identities = 61/173 (35%), Positives = 99/173 (57%), Gaps = 6/173 (3%)
Query: 45 EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEE 104
+P++ +K+ E I E++ KI A+GA VVL+ I D+ +YF + RV +E
Sbjct: 247 TDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKE 306
Query: 105 DLKRTMKACGGAVMTTAHDLN------DSVLGTCAVFDERQIGSERFNVFSGCKNARTCT 158
DL+R KA G +++T +L S LG + +IG + + G K + +
Sbjct: 307 DLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKRSSAS 366
Query: 159 IIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
II+RG + L+E ERSLHDA+ +V+RT+ +++VV GGGA+E LS L +++
Sbjct: 367 IILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFA 419
Score = 120 bits (302), Expect = 1e-28
Identities = 66/213 (30%), Positives = 105/213 (49%), Gaps = 16/213 (7%)
Query: 424 LEKCAATALSSKLIHQQKGFFSKMVVDAVMSL-------DDLLPLNMIGIKKVAGGALED 476
L A T++SSK+I FF+ MVVDA++++ P+ + I K G + ++
Sbjct: 140 LINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKE 199
Query: 477 SLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVV 536
S LV+G + T A G P KN KIA L+ L+ + ++ + E+ +K+
Sbjct: 200 SYLVNGYALNCTRASQGM---PTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIR 256
Query: 537 DAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACG 596
E I E++ KI A+GA VVL+ I D+ +YF + RV +EDL+R KA G
Sbjct: 257 QRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATG 316
Query: 597 GAVMTTAHDLN------DSVLGTCAVFDERQIG 623
+++T +L S LG + +IG
Sbjct: 317 ATLVSTLANLEGEETFDPSYLGEAEEVVQERIG 349
Score = 93.9 bits (234), Expect = 4e-20
Identities = 37/77 (48%), Positives = 56/77 (72%)
Query: 336 ENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVH 395
E + G+ N+ A A+ + V+++LGP G+DK++VD G TI+NDGATI+KLL++ H
Sbjct: 2 ERTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 61
Query: 396 PAAKTLVDIAKSQDAEI 412
PAAK LV++A+ QD E+
Sbjct: 62 PAAKILVELAQLQDKEV 78
Score = 48.4 bits (116), Expect = 8e-06
Identities = 25/77 (32%), Positives = 41/77 (53%)
Query: 239 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV 298
P KN KIA L+ L+ + ++ + E+ +K+ E I E++ KI A+GA V
Sbjct: 218 PTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANV 277
Query: 299 VLSKLPIGDVATQYFAD 315
VL+ I D+ +YF +
Sbjct: 278 VLTTGGIDDMCLKYFVE 294
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, delta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 515
Score = 129 bits (326), Expect = 7e-32
Identities = 83/272 (30%), Positives = 121/272 (44%), Gaps = 64/272 (23%)
Query: 346 SNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHP--------- 396
SNI A +AV DA+RT+LGPRGMDK+I G+ I+NDGATI+K + ++HP
Sbjct: 12 SNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELS 71
Query: 397 -----------------------AAKTLVD-------------IAKSQDAEIQKSDSGEY 420
A ++L+ IA + EI S S
Sbjct: 72 KAQDIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPV 131
Query: 421 ----RGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL-----LPLNMIGIKKVAG 471
R L K A T+L+SK++ Q + + VDAV+ + D + L I I K G
Sbjct: 132 DLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLG 191
Query: 472 GALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELE-LKAERDNAEIRLDSVE 530
G +ED+ LVDG+ F + + P + KI L+ L K + DN + V
Sbjct: 192 GTIEDTELVDGLVFTQKASKKA--GGPTRIEKAKIGLIQFCLSPPKTDMDNNIV----VN 245
Query: 531 EYQ---KVVDAEWKILYEKLDKIHASGAQVVL 559
+Y +++ E K + KI SG V+L
Sbjct: 246 DYAQMDRILREERKYILNMCKKIKKSGCNVLL 277
Score = 80.8 bits (200), Expect = 6e-16
Identities = 47/166 (28%), Positives = 86/166 (51%), Gaps = 6/166 (3%)
Query: 52 KVVDAEWKILYEKLDKIHASGAQVVL---SKL--PIGDVATQYFADRDMFCAGRVPEEDL 106
+++ E K + KI SG V+L S L + D+A + A + + E++
Sbjct: 252 RILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEI 311
Query: 107 KRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNA-RTCTIIVRGGA 165
+ K G + + + LG+ + +E +G + +G KN +T TI+VRG
Sbjct: 312 EFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSN 371
Query: 166 EQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
+ L+E ERSLHDA+ ++R ++ A++ GGGA E+E++ L +++
Sbjct: 372 KLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWA 417
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
gamma chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 525
Score = 127 bits (322), Expect = 3e-31
Identities = 90/356 (25%), Positives = 167/356 (46%), Gaps = 61/356 (17%)
Query: 328 ILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATI 387
+L+L + T+ G+ +SNI A +AV D +RTTLGPR M K+++D G ++NDG I
Sbjct: 2 VLVLNQNTKRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAI 61
Query: 388 MKLLDIVHPAAKTLVDIAKSQDAEIQKSD------SGE---------------------Y 420
++ +D+ HPAAK++++++++QD E+ +GE Y
Sbjct: 62 LREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAY 121
Query: 421 RGLLE----------------------KCAATALSSKLIHQQKGFFSKMVVDAV--MSLD 456
+ L+ K + + +K + + + +DAV + D
Sbjct: 122 KKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRD 181
Query: 457 DLLPLNMIGIK------KVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLN 510
I IK K+ GG +EDS ++ GV K + +M+ + +NP+I LL+
Sbjct: 182 LGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHP--KMR-RYIENPRIVLLD 238
Query: 511 IELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQ 570
LE K + + E++ +++ E + + + I A +V+++ + D+A
Sbjct: 239 CPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQH 298
Query: 571 YFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGT-CAVFDERQIGSE 625
Y ++ RV + D R +ACG ++ +L +S +GT C +F+ ++IG E
Sbjct: 299 YLLKANISAIRRVRKTDNNRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGDE 354
Score = 102 bits (255), Expect = 7e-23
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 7/177 (3%)
Query: 66 DKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLN 125
+ I A +V+++ + D+A Y ++ RV + D R +ACG ++ +L
Sbjct: 276 EDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIARACGATIVNRPEELR 335
Query: 126 DSVLGT-CAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVR 184
+S +GT C +F+ ++IG E F F+ CK+ + CTI++RG ++ L E ER+L DA+ + R
Sbjct: 336 ESDVGTGCGLFEVKKIGDEYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVAR 395
Query: 185 RTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKT 241
+ ++ GGGA EM +S L + + V+ + A++ D E+ P+T
Sbjct: 396 NVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQW-----PYRAVA-DALEIIPRT 446
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 536
Score = 127 bits (321), Expect = 4e-31
Identities = 60/173 (34%), Positives = 98/173 (56%), Gaps = 6/173 (3%)
Query: 45 EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEE 104
++P + +++ E I E++ KI +GA VVL+ I D+ +YF + R +E
Sbjct: 251 DDPAKLEQIRQREADITKERIKKILDAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKE 310
Query: 105 DLKRTMKACGGAVMTTAHDL------NDSVLGTCAVFDERQIGSERFNVFSGCKNARTCT 158
DLKR KA GG +++T DL + S LG + +I + + G K + +
Sbjct: 311 DLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVQERIADDECILIKGTKKRSSAS 370
Query: 159 IIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
II+RG + L+E ERSLHDA+ +V+RT+ +++VV GGGA+E LS L +++
Sbjct: 371 IILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVEAALSIYLENFA 423
Score = 114 bits (286), Expect = 1e-26
Identities = 66/215 (30%), Positives = 102/215 (47%), Gaps = 16/215 (7%)
Query: 424 LEKCAATALSSKLIHQQKGFFSKMVVDAVMSL-------DDLLPLNMIGIKKVAGGALED 476
L A T++SSK+I FFS +VVDAV+++ + P+ + I K G + +
Sbjct: 144 LINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKTTNENGEIKYPIKAVNILKAHGKSARE 203
Query: 477 SLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVV 536
S LV G + T A PK K KIA L+ L+ +I +D + +++
Sbjct: 204 SYLVKGYALNCTRASQQM---PKRIKKAKIACLDFNLQKAKMALGVQIVVDDPAKLEQIR 260
Query: 537 DAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACG 596
E I E++ KI +GA VVL+ I D+ +YF + R +EDLKR KA G
Sbjct: 261 QREADITKERIKKILDAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATG 320
Query: 597 GAVMTTAHDL------NDSVLGTCAVFDERQIGSE 625
G +++T DL + S LG + +I +
Sbjct: 321 GTLVSTLADLEGEETFDASYLGFADEVVQERIADD 355
Score = 92.1 bits (229), Expect = 1e-19
Identities = 40/79 (50%), Positives = 57/79 (72%)
Query: 334 GTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDI 393
G E + G+ N+ A AV + V+T+LGP G+DK++VD G TI+NDGATI+KLL++
Sbjct: 4 GGERTSGQDVRTQNVTATMAVANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEV 63
Query: 394 VHPAAKTLVDIAKSQDAEI 412
HPAAK LV++A+ QD E+
Sbjct: 64 EHPAAKILVELAQLQDREV 82
Score = 45.5 bits (108), Expect = 7e-05
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 239 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV 298
PK K KIA L+ L+ +I +D + +++ E I E++ KI +GA V
Sbjct: 222 PKRIKKAKIACLDFNLQKAKMALGVQIVVDDPAKLEQIRQREADITKERIKKILDAGANV 281
Query: 299 VLSKLPIGDVATQYF 313
VL+ I D+ +YF
Sbjct: 282 VLTTGGIDDMCLKYF 296
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
beta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 518
Score = 126 bits (318), Expect = 7e-31
Identities = 97/351 (27%), Positives = 160/351 (45%), Gaps = 58/351 (16%)
Query: 330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKS-TISNDGATIM 388
+ K+ + + +S+ AV D V++TLGP+GMDK++ + + ++NDGATI+
Sbjct: 2 IFKDQATEERAENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSASSNTIMVTNDGATIL 61
Query: 389 KLLDIVHPAAKTLVDIAKSQD--------------AEIQK-------------------- 414
K + + +PAAK LV+I+K QD AE+ +
Sbjct: 62 KSIGLDNPAAKVLVNISKVQDDEVGDGTTSVTVLAAELLREAEKLINQKIHPQTIIEGYR 121
Query: 415 ------------------SDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLD 456
SD ++R L A T LSSK++ Q K F+++ VDAV+ L
Sbjct: 122 LATKAALDALTKSAVDNSSDKTKFREDLINIARTTLSSKILSQHKDHFAQLAVDAVLRLK 181
Query: 457 DLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELEL- 515
L I I K+ GG L DS L +G K QPK +N KI + N ++
Sbjct: 182 GSTNLEAIQIIKILGGKLSDSFLDEGFILAKKIGV----NQPKRIENAKILIANTTMDTD 237
Query: 516 KAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADR 575
K + + +R+DS + ++ AE + + EK++KI G +++ I + Q FAD
Sbjct: 238 KVKIFGSRVRVDSTAKLAELEKAEREKMKEKVEKILKHGINCFINRQLIYNYPEQLFADA 297
Query: 576 DMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
+ E ++R GG +++T LG+C + +E IG ++
Sbjct: 298 GIMSIEHADFEGVERLALVTGGEIVSTFDHPELVKLGSCDLIEEIMIGEDK 348
Score = 95.7 bits (238), Expect = 1e-20
Identities = 52/152 (34%), Positives = 83/152 (54%)
Query: 56 AEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGG 115
AE + + EK++KI G +++ I + Q FAD + E ++R GG
Sbjct: 260 AEREKMKEKVEKILKHGINCFINRQLIYNYPEQLFADAGIMSIEHADFEGVERLALVTGG 319
Query: 116 AVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERS 175
+++T LG+C + +E IG ++ FSG K CTI++RG +Q L+E ERS
Sbjct: 320 EIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKAGEACTIVLRGATQQILDEAERS 379
Query: 176 LHDAIMIVRRTIRNHAVVAGGGAIEMELSKAL 207
LHDA+ ++ +T++ V GGG EM +SKA+
Sbjct: 380 LHDALCVLSQTVKESRTVLGGGCAEMLMSKAV 411
Score = 34.5 bits (79), Expect = 0.18
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 238 QPKTYKNPKIALLNIELEL-KAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGA 296
QPK +N KI + N ++ K + + +R+DS + ++ AE + + EK++KI G
Sbjct: 218 QPKRIENAKILIANTTMDTDKVKIFGSRVRVDSTAKLAELEKAEREKMKEKVEKILKHGI 277
Query: 297 QVVLSKLPIGDVATQYFAD 315
+++ I + Q FAD
Sbjct: 278 NCFINRQLIYNYPEQLFAD 296
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin
family, gamma subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 480
Score = 117 bits (295), Expect = 5e-28
Identities = 86/359 (23%), Positives = 151/359 (42%), Gaps = 106/359 (29%)
Query: 327 QILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGAT 386
+L+L + T+ G+ + NI A + V D +RT LGPR M K+++D G ++NDG
Sbjct: 1 PVLVLNQNTKRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNA 60
Query: 387 IMKLLDIVHPAAKTLVDIAKSQDAEIQKSD--------SGE------------------- 419
I++ +D+ HPAAK++++++++QD E+ D +GE
Sbjct: 61 ILREIDVAHPAAKSMIELSRTQDEEV--GDGTTSVIILAGEILAVAEPFLERGIHPTVII 118
Query: 420 --YRGLLE----------------------KCAATALSSKLIHQQKGFFSKMVVDAVM-- 453
YR LE K + + +K + + + +DAV
Sbjct: 119 KAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTV 178
Query: 454 SLDDLLPLNMIGIK------KVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIA 507
++++ I IK K+ GG +EDS ++DGV K + M+ + +NP+I
Sbjct: 179 AVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPK--MR-RRIENPRIV 235
Query: 508 LLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDV 567
L LD EY +V+++ + D+
Sbjct: 236 L-----------------LDCPLEY------------------------LVITEKGVSDL 254
Query: 568 ATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCA-VFDERQIGSE 625
A Y + RV + D R +ACG ++ +L +S +GT A +F+ ++IG E
Sbjct: 255 AQHYLVKAGITALRRVRKTDNNRIARACGATIVNRPEELTESDVGTGAGLFEVKKIGDE 313
Score = 101 bits (254), Expect = 8e-23
Identities = 52/161 (32%), Positives = 86/161 (53%), Gaps = 7/161 (4%)
Query: 82 IGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCA-VFDERQI 140
+ D+A Y + RV + D R +ACG ++ +L +S +GT A +F+ ++I
Sbjct: 251 VSDLAQHYLVKAGITALRRVRKTDNNRIARACGATIVNRPEELTESDVGTGAGLFEVKKI 310
Query: 141 GSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIE 200
G E F + CK+ + CTI++RG ++ L E ER+L DA+ + R I N +V GGGA E
Sbjct: 311 GDEYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATE 370
Query: 201 MELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKT 241
M +S AL + + + V + A++ E+ P+T
Sbjct: 371 MAVSHALSEKAKSIEGVEQW-----PYKAVA-SALEVIPRT 405
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 101 bits (254), Expect = 1e-22
Identities = 84/359 (23%), Positives = 147/359 (40%), Gaps = 68/359 (18%)
Query: 330 LLKEGTENSQG-KPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIM 388
LLKEG + G + +I NI AC+ + RT+LGP GM+K++++ K ++ND ATI+
Sbjct: 5 LLKEGYRHMSGLEEAVIKNIEACKELSQITRTSLGPNGMNKMVINHLDKLFVTNDAATIL 64
Query: 389 KLLDIVHPAAKTLVDIAKSQDAEIQKSDSGEYRGLLEKCAATALSSKLIHQQ-------K 441
+ L++ HPAAK LV ++ Q+ EI D +L + +LI K
Sbjct: 65 RELEVQHPAAKLLVMASEMQENEI--GDGTNLVIVL-AGELLNKAEELIRMGLHPSEIIK 121
Query: 442 GF----------FSKMVVDAVMSLDD---------------------------------L 458
G+ ++VV + L D +
Sbjct: 122 GYEMALKKAMEVLEELVVWEIEDLRDKKELIKALKASISSKQYGNEDFLSQLVAKACSTV 181
Query: 459 LPLNM-------IGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511
LP N I + K+ GG+L +S ++ G+ F + E K K K+A+ +
Sbjct: 182 LPKNPQNFNVDNIRVVKIMGGSLSNSEVIKGMVFNRE-----AEGSVKRVKKAKVAVFSC 236
Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQY 571
L+ + + + EE E + + I SG V+++ +GD+A +
Sbjct: 237 PLDTATTETKGTVLIHNAEELLNYSKGEENQIEAMIKAIADSGVNVIVTGGSVGDMA-LH 295
Query: 572 FADRDMFCAGRVPEE-DLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTL 629
+ +R ++P + +L+R K G + LG +IG ++ T+
Sbjct: 296 YLNRYGIMVLKIPSKFELRRLCKTVGATPLPRLGAPTPEELGYVDSVYVSEIGGDKVTV 354
Score = 77.1 bits (190), Expect = 9e-15
Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 6/169 (3%)
Query: 45 EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEE 104
EE Y K E + + I SG V+++ +GD+A ++ +R ++P +
Sbjct: 255 EELLNYSK---GEENQIEAMIKAIADSGVNVIVTGGSVGDMA-LHYLNRYGIMVLKIPSK 310
Query: 105 -DLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVF-SGCKNARTCTIIVR 162
+L+R K G + LG +IG ++ VF ++R TII+R
Sbjct: 311 FELRRLCKTVGATPLPRLGAPTPEELGYVDSVYVSEIGGDKVTVFKQENGDSRISTIILR 370
Query: 163 GGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
G + L++ ER++ D + +V+ +++ + G GA E+EL+ L Y+
Sbjct: 371 GSTKNLLDDIERAIDDGVNVVKALVKDGRFLPGAGATEIELASRLTKYA 419
Score = 28.9 bits (65), Expect = 8.5
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 240 KTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVV 299
K K K+A+ + L+ + + + EE E + + I SG V+
Sbjct: 224 KRVKKAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAMIKAIADSGVNVI 283
Query: 300 LSKLPIGDVATQYFADR 316
++ +GD+A ++ +R
Sbjct: 284 VTGGSVGDMA-LHYLNR 299
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, theta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 472
Score = 86.1 bits (214), Expect = 9e-18
Identities = 27/71 (38%), Positives = 47/71 (66%)
Query: 342 PQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTL 401
++ NI AC+ + RT+ GP GM+K++++ K +++D ATI++ L++ HPAAK L
Sbjct: 8 EAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLL 67
Query: 402 VDIAKSQDAEI 412
V ++ Q+ EI
Sbjct: 68 VMASQMQEEEI 78
Score = 79.6 bits (197), Expect = 1e-15
Identities = 38/172 (22%), Positives = 80/172 (46%), Gaps = 9/172 (5%)
Query: 72 GAQVVLSKLPIGDVATQYFADRDMFCAGRVPEE-DLKRTMKACGGAVMTTAHDLNDSVLG 130
G V+++ +GD+A ++ ++ ++ + +L+R + G + +G
Sbjct: 231 GVNVIVAGGSVGDLA-LHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRLGAPTPEEIG 289
Query: 131 TCAVFDERQIGSERFNVFSGCKNA-RTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRN 189
C +IG + VF K + TI++RG + L++ ER++ D + + + ++
Sbjct: 290 YCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKD 349
Query: 190 HAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKT 241
V G GA E+EL+K L++Y +T + + + FE+ P+T
Sbjct: 350 GRFVPGAGATEIELAKKLKEYGE-----KTPGLEQYAIKKFA-EAFEVVPRT 395
Score = 44.5 bits (106), Expect = 1e-04
Identities = 43/217 (19%), Positives = 84/217 (38%), Gaps = 56/217 (25%)
Query: 424 LEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNM-------IGIKKVAGGALED 476
+ K TA++SK + F S +V +A +S+ LP N+ I + K+ GG+LED
Sbjct: 141 VSKALKTAIASKQYGNED-FLSPLVAEACISV---LPENIGNFNVDNIRVVKILGGSLED 196
Query: 477 SLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVV 536
S +V G+ FK+ E K K K+A+ + ++
Sbjct: 197 SKVVRGMVFKR-----EPEGSVKRVKKAKVAVFSCPFDI--------------------- 230
Query: 537 DAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEE-DLKRTMKAC 595
G V+++ +GD+A ++ ++ ++ + +L+R +
Sbjct: 231 -----------------GVNVIVAGGSVGDLA-LHYCNKYGIMVIKINSKFELRRLCRTV 272
Query: 596 GGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE 632
G + +G C +IG + + R+
Sbjct: 273 GATPLPRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQ 309
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, zeta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 484
Score = 80.8 bits (200), Expect = 5e-16
Identities = 33/112 (29%), Positives = 60/112 (53%)
Query: 100 RVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTI 159
R +++R ACGG M + DL+ LG + ER +G E++ G KN ++CTI
Sbjct: 273 RAKRRNMERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNPKSCTI 332
Query: 160 IVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
+++G + + + + ++ D + V+ I + VV G GA E+ L L+++
Sbjct: 333 LIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFK 384
Score = 64.2 bits (157), Expect = 8e-11
Identities = 74/336 (22%), Positives = 133/336 (39%), Gaps = 87/336 (25%)
Query: 347 NINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAK 406
NI+A + + D ++T LGP+G K++V G ++ DG ++ + I HP A + A
Sbjct: 17 NISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAAT 76
Query: 407 SQDA-------------------------------------EIQKSDSGEY--------- 420
+QD E+ K+ + ++
Sbjct: 77 AQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVE 136
Query: 421 ----RGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL---DDLLPLNMIGIKKVAGGA 473
R LL A T+L +KL +++VVDAV+++ D+ + L+M+ I ++ +
Sbjct: 137 IDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKS 196
Query: 474 LEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQ 533
D+ L+ G+ + +M PK +N I N+ LE
Sbjct: 197 DSDTKLIRGLVLDHGARHP--DM-PKRVENAYILTCNVSLE------------------- 234
Query: 534 KVVDAEWKILYEKLDKIHASGA-QVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTM 592
YEK ++++ VV+++ I + A + R +++R
Sbjct: 235 ----------YEK-TEVNSGFFYSVVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLT 283
Query: 593 KACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDT 628
ACGG M + DL+ LG + ER +G E+ T
Sbjct: 284 LACGGVAMNSVDDLSPECLGYAGLVYERTLGEEKYT 319
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
zeta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 69.0 bits (169), Expect = 3e-12
Identities = 83/364 (22%), Positives = 145/364 (39%), Gaps = 66/364 (18%)
Query: 328 ILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATI 387
+ LL E+ + L+ NINA + + D ++T LGP+G K++V G ++ DG +
Sbjct: 2 VQLLNPKAESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVL 61
Query: 388 MKLLDIVHPAAKTLVDIAKSQDA------------------------------------- 410
+ + I HP A + A +QD
Sbjct: 62 LNEMQIQHPTASMIARAATAQDEITGDGTTSTVILIGELLKQAERYILEGVHPRIITEGF 121
Query: 411 EIQKSDSGEY-------------RGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL-- 455
EI + + E+ R L A T+L +KL +++VVDAV+++
Sbjct: 122 EIARKELLEFLDKFKVKTEDEVDREFLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKK 181
Query: 456 -DDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELE 514
+ + L M+ I ++ + D+ L+ G+ + P+ KN I N+ LE
Sbjct: 182 DGEDIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDM---PRRVKNAYILTCNVSLE 238
Query: 515 LKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKI----------HASGAQVVLSKLPI 564
+ N+ S E+ +K+V AE K + +++ KI VV+++ I
Sbjct: 239 YEKTEVNSGFFYSSAEQREKLVAAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGI 298
Query: 565 GDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGS 624
+ A + R +++R ACGG + + DL LG + E IG
Sbjct: 299 DPPSLDLLAKEGILALRRAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETTIGE 358
Query: 625 ERDT 628
E+ T
Sbjct: 359 EKYT 362
Score = 67.4 bits (165), Expect = 8e-12
Identities = 30/111 (27%), Positives = 56/111 (50%)
Query: 100 RVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTI 159
R +++R ACGG + + DL LG + E IG E++ KN ++CTI
Sbjct: 316 RAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETTIGEEKYTFIEEVKNPKSCTI 375
Query: 160 IVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDY 210
+++G + + + + ++ D + V+ I + VV G GA E+ + L++
Sbjct: 376 LIKGPNDHTIAQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYRHLKEN 426
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase
Fab1. Fab1p is important for vacuole size regulation,
presumably by modulating PtdIns(3,5)P2 effector
activity. In the human homolog p235/PIKfyve deletion of
this domain leads to loss of catalytic activity. However
no exact function this domain has been defined. In
general, chaperonins are involved in productive folding
of proteins.
Length = 261
Score = 64.9 bits (159), Expect = 1e-11
Identities = 54/182 (29%), Positives = 78/182 (42%), Gaps = 15/182 (8%)
Query: 447 MVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKI 506
V V + DD+ + IKK+ GG+ DS +VDGV F K A+ M P KNP+I
Sbjct: 33 NVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKR--M-PSKIKNPRI 89
Query: 507 ALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL--DKIHASGAQVVLSKLPI 564
LL LE +N + LD V +K Y K +I A V+L + +
Sbjct: 90 LLLQGPLEY-QRVENKLLSLDPVILQEKE--------YLKNLVSRIVALRPDVILVEKSV 140
Query: 565 GDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDS-VLGTCAVFDERQIG 623
+A + + V L+R + G ++++ DL S LGTC F R
Sbjct: 141 SRIAQDLLLEAGITLVLNVKPSVLERISRCTGADIISSMDDLLTSPKLGTCESFRVRTYV 200
Query: 624 SE 625
E
Sbjct: 201 EE 202
Score = 43.0 bits (102), Expect = 2e-04
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 16/151 (10%)
Query: 49 EYQKV----VDAEWKILYEK------LDKIHASGAQVVLSKLPIGDVATQYFADRDMFCA 98
EYQ+V + + IL EK + +I A V+L + + +A + +
Sbjct: 97 EYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLV 156
Query: 99 GRVPEEDLKRTMKACGGAVMTTAHDLNDS-VLGTCAVFDERQIGSER-----FNVFSGCK 152
V L+R + G ++++ DL S LGTC F R E F GC
Sbjct: 157 LNVKPSVLERISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCP 216
Query: 153 NARTCTIIVRGGAEQFLEETERSLHDAIMIV 183
CTI++RGG + L++ +R + +
Sbjct: 217 KELGCTILLRGGDLEELKKVKRVVEFMVFAA 247
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 46.1 bits (110), Expect = 4e-05
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGA 73
E +KK++++KK+KKKK KKKEEEEEEE+ + ++ + E + EK ++
Sbjct: 416 VEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
Query: 74 QVVLSK 79
Q L
Sbjct: 476 QATLFD 481
Score = 38.0 bits (89), Expect = 0.014
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
E L KK KK KK +K +KK++EE++E+++
Sbjct: 400 EFLTGSKKATKKIKKIVEKAEKKREEEKKEKKK 432
Score = 35.3 bits (82), Expect = 0.11
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
KK KK KK +K +KK+++E++E++++
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFA 436
Score = 34.5 bits (80), Expect = 0.19
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 8 FRAHFCEELRKKKKKKK----KKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYE 63
A L +++ + KK KK KK +K E++ EEE E +K A K E
Sbjct: 384 LAARLAAFLELTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEE 443
Query: 64 KLDK 67
+ ++
Sbjct: 444 EEEE 447
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of
type I is seven-fold and they are found in eubacteria
(GroEL) and in organelles of eubacterial descent (hsp60
and RBP). With the aid of cochaperonin GroES, GroEL
encapsulates non-native substrate proteins inside the
cavity of the GroEL-ES complex and promotes folding by
using energy derived from ATP hydrolysis.
Length = 520
Score = 44.0 bits (105), Expect = 2e-04
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 351 CQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMK 389
+ DAV+ TLGP+G + +I G I+ DG T+ K
Sbjct: 17 VNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAK 55
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 40.1 bits (94), Expect = 2e-04
Identities = 20/35 (57%), Positives = 23/35 (65%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
K K KK KKKKKKKKKK K +EE E +E +K
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEK 45
Score = 39.3 bits (92), Expect = 4e-04
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQ 51
KKKKKKKKKK K K++ E+EEEE+ E
Sbjct: 18 DVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESD 51
Score = 39.3 bits (92), Expect = 5e-04
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
L+ KK KKKKKKKKKK K K+E E+EE +
Sbjct: 12 LKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEE 44
Score = 38.6 bits (90), Expect = 0.001
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
L+ K KK KKKKKKKKKK K +EE E+ +E
Sbjct: 10 LKLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEE 43
Score = 38.2 bits (89), Expect = 0.001
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
KKKKKKKKKK K K++ ++EEEE+ + K
Sbjct: 19 VKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLK 53
Score = 37.8 bits (88), Expect = 0.001
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
KKKKKKKKKK K K++ E+EEEE+ + + E
Sbjct: 18 DVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGE 56
Score = 35.1 bits (81), Expect = 0.012
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
+KKKKKKKKK K K++ +K+EEE+ E D
Sbjct: 20 KKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDL 52
Score = 33.9 bits (78), Expect = 0.033
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLD 66
KKKKKKKK K K++ +K++EE+ E + + + KI E+
Sbjct: 22 KKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQEEDG 70
Score = 33.9 bits (78), Expect = 0.035
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
K K K KK KKKKKKKKK+ + +EE E ++
Sbjct: 7 GGKLKLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEE 42
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 41.6 bits (98), Expect = 3e-04
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVD 55
EE +K K KKKK KKKK K K KK ++++++ E + ++ D
Sbjct: 79 EEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAED 120
Score = 40.4 bits (95), Expect = 9e-04
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKI 68
KKKK KKKK K K KK KK ++ E+++E + K+ D K E L +
Sbjct: 85 KWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLT-KSYSETLSTL 136
Score = 39.7 bits (93), Expect = 0.001
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIH 69
KK KKKK K K KK KK K E+++E+E ++ + + + L ++
Sbjct: 89 KKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELK 140
Score = 38.9 bits (91), Expect = 0.003
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
+ +K KKKK K K KK KK K E+++E+E D+
Sbjct: 86 WKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDK 121
Score = 36.2 bits (84), Expect = 0.022
Identities = 18/46 (39%), Positives = 31/46 (67%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKI 60
E +K+K K KKKK KKKK K K ++++++++ E + +AE K+
Sbjct: 77 EYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKL 122
Score = 36.2 bits (84), Expect = 0.022
Identities = 15/39 (38%), Positives = 30/39 (76%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
EE+ K KK+ ++K+K K KKKK KK++++++++ D+ +
Sbjct: 69 EEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKD 107
Score = 30.4 bits (69), Expect = 1.6
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 2 QIYKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
Q +K + + ++ + K KK KK K +KK +K+ E++ E+
Sbjct: 82 QKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLED 124
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal.
This domain is found to the N-terminus of bacterial
signal peptidases of the S49 family (pfam01343).
Length = 154
Score = 41.0 bits (97), Expect = 4e-04
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 7 QFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
A ++ K +K +KK +K K K +KK+ ++EE +P
Sbjct: 57 SLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKP 97
Score = 30.2 bits (69), Expect = 1.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 5 KGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKK 38
K + +A E + +K K K +KKK KK++ K +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 40.4 bits (95), Expect = 4e-04
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
KK+ K++KKK+KKKKKKK KK ++EE+E +
Sbjct: 84 AKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSK 116
Score = 39.3 bits (92), Expect = 0.001
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
K++KKK+KKKKKKK KK KKEE+E + +E
Sbjct: 88 AKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEE 120
Score = 39.3 bits (92), Expect = 0.001
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
R K++KKK+KKKKKKK KK K+EE+E + E
Sbjct: 87 RAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSE 119
Score = 39.3 bits (92), Expect = 0.001
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
EE KK+ K++KKK+KKKKKKK K+ ++EE+
Sbjct: 80 EEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGS 115
Score = 36.9 bits (86), Expect = 0.008
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
K KK+ K++KKK+KKKKKKK ++ ++E E K +
Sbjct: 82 KTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEES 121
Score = 35.8 bits (83), Expect = 0.020
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
+KK+KKKKKKK KK KK++K+ + EE DE ++ + + + E ++K
Sbjct: 91 QKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPVEIMEK 142
Score = 31.6 bits (72), Expect = 0.57
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 14 EELRKKKKKKKKKKKKKKKKKK---KKKEEEEEEEEPDEYQKVVDAE 57
++ ++KKKKKKK KK KK++K K EE +EEE E K +
Sbjct: 91 QKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPV 137
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional.
Length = 555
Score = 41.8 bits (99), Expect = 9e-04
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 348 INACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMK 389
+ + + DAV TLGP+G + +I + G I+ DG T+ K
Sbjct: 28 LKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAK 69
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 41.3 bits (98), Expect = 0.001
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 353 AVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMK 389
+ DAV+ TLGP+G + +I G TI+ DG +I K
Sbjct: 21 KLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAK 57
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 39.7 bits (93), Expect = 0.002
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
EE ++KKKKK+ KK+KK+KK KK+K E + + + +K
Sbjct: 152 EEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKK 190
Score = 38.2 bits (89), Expect = 0.005
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
EE +K+KKKKK+ KK+KK+KK KK++ E + + +K
Sbjct: 151 EEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKK 189
Score = 38.2 bits (89), Expect = 0.005
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
EE KK+KKKKK+ KK+KK+KK KKE+ E + + +K
Sbjct: 150 EEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKK 188
Score = 37.8 bits (88), Expect = 0.008
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
E+ KKKKK+ KK+KK+KK KK+K E + ++ + +K
Sbjct: 153 EKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKK 191
Score = 35.8 bits (83), Expect = 0.032
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
E ++KK+KKKKK+ KK+KK+KK ++E+ E +K
Sbjct: 148 EVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKK 186
Score = 35.5 bits (82), Expect = 0.047
Identities = 15/42 (35%), Positives = 31/42 (73%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWK 59
+ ++++KK+KKKKK+ KK+KKE+++++E+ E + + K
Sbjct: 148 EVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKK 189
Score = 35.1 bits (81), Expect = 0.060
Identities = 15/31 (48%), Positives = 27/31 (87%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
E+ +++KK+KKKKK+ KK+KK+KK+++E+
Sbjct: 147 AEVEEEEKKEKKKKKEVKKEKKEKKDKKEKM 177
Score = 34.7 bits (80), Expect = 0.070
Identities = 13/39 (33%), Positives = 29/39 (74%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
+E ++++KK+KKKKK+ KK+KK++++++E+ +
Sbjct: 145 KEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGS 183
Score = 34.7 bits (80), Expect = 0.082
Identities = 17/28 (60%), Positives = 20/28 (71%), Gaps = 4/28 (14%)
Query: 15 ELRKKKKKKKK----KKKKKKKKKKKKK 38
E ++KK KK+K K KKKKKKKKKK
Sbjct: 166 EKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 34.3 bits (79), Expect = 0.095
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEE 40
KK KK+K + K KKKKKKK++
Sbjct: 169 EKKDKKEKMVEPKGSKKKKKKKKK 192
Score = 33.2 bits (76), Expect = 0.23
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 7/37 (18%)
Query: 9 RAHFCEELRKKKKKKKKKKKK-------KKKKKKKKK 38
+E++K+KK+KK KK+K KKKKKKKKK
Sbjct: 156 EKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKK 192
Score = 32.0 bits (73), Expect = 0.57
Identities = 13/33 (39%), Positives = 26/33 (78%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
+E K +K+ + ++++KK+KKKKKE ++E++E
Sbjct: 137 KETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKE 169
Score = 31.2 bits (71), Expect = 1.2
Identities = 12/36 (33%), Positives = 29/36 (80%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
K+ + ++++KK+KKKKK+ KKE++E++++ ++ +
Sbjct: 144 EKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVE 179
Score = 30.5 bits (69), Expect = 1.7
Identities = 14/37 (37%), Positives = 31/37 (83%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVV 54
K +K+ + ++++KK+KKKKK+ ++E++E+ D+ +K+V
Sbjct: 142 KVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMV 178
Score = 30.5 bits (69), Expect = 2.0
Identities = 9/33 (27%), Positives = 24/33 (72%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
K +K+ + ++++KK+KKK++E ++E+ ++
Sbjct: 138 ETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEK 170
Score = 30.1 bits (68), Expect = 2.7
Identities = 11/34 (32%), Positives = 25/34 (73%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
E+ K +K+ + ++++KK+KKKK+E ++E++
Sbjct: 136 EKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKE 169
Score = 30.1 bits (68), Expect = 2.8
Identities = 12/46 (26%), Positives = 30/46 (65%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWK 59
+ +K+ + ++++KK+KKKKK+ ++E++E++ + + V K
Sbjct: 139 TTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSK 184
Score = 29.3 bits (66), Expect = 5.1
Identities = 8/31 (25%), Positives = 21/31 (67%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
E K+ K +K+ + ++++KK+K++++E
Sbjct: 133 ETSEKETTAKVEKEAEVEEEEKKEKKKKKEV 163
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 38.7 bits (91), Expect = 0.002
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
K+KKKKKKKKK+ + ++KK++ EE E QK VDA
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDAA 120
Score = 31.4 bits (72), Expect = 0.71
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 30 KKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
K+KKKKKKK++E E E + + VV E K + +D
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDA 119
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed.
Length = 541
Score = 40.5 bits (95), Expect = 0.003
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 356 DAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDI 393
DAV+ TLGP+G + +I G TI+NDG TI K +++
Sbjct: 25 DAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIEL 62
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 40.3 bits (95), Expect = 0.003
Identities = 13/30 (43%), Positives = 25/30 (83%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
+K+++KK +K+KKKKK+KKK K+ +++ +
Sbjct: 385 KKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 39.2 bits (92), Expect = 0.006
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEE 40
EE + +K+KKKKK+KKK KK+KKK +
Sbjct: 388 EEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 38.8 bits (91), Expect = 0.007
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEE 41
E +K +K+KKKKK+KKK KK+KKK +
Sbjct: 387 REEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 38.0 bits (89), Expect = 0.014
Identities = 13/28 (46%), Positives = 25/28 (89%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
+KK+++KK +K+KKKKK+KKK ++ +++
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRKKK 411
Score = 36.9 bits (86), Expect = 0.026
Identities = 14/28 (50%), Positives = 25/28 (89%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEE 45
KKK+++KK +K+KKKKK+KKK ++ +++
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRKKK 411
Score = 36.5 bits (85), Expect = 0.041
Identities = 13/29 (44%), Positives = 25/29 (86%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
KKK+++KK +K+KKKKK+KK+ ++ +++
Sbjct: 383 PKKKREEKKPQKRKKKKKRKKKGKKRKKK 411
Score = 29.6 bits (67), Expect = 5.7
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
EEL K+ ++ K+K K KKK+++K+ ++ +++
Sbjct: 366 EELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKR 401
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 38.7 bits (90), Expect = 0.003
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 17 RKKKKKKK---KKKKKKKKKKKKKKEEEEEEEEP 47
+K KKKK K++KKKKK+KKKKK+ E
Sbjct: 142 KKHKKKKHEDDKERKKKKKEKKKKKKRHSPEHPG 175
Score = 38.3 bits (89), Expect = 0.005
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
E+ KKKK + K++KKKKK+KKKK++ E P
Sbjct: 141 EKKHKKKKHEDDKERKKKKKEKKKKKKRHSPEHP 174
Score = 38.3 bits (89), Expect = 0.005
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
KK KKKK + K++KKKKK+K+++++ P+
Sbjct: 142 KKHKKKKHEDDKERKKKKKEKKKKKKRHSPE 172
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 2. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 83
Score = 36.2 bits (84), Expect = 0.005
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
KKKKKKKKKK + K ++ E+ +
Sbjct: 23 VKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 35.4 bits (82), Expect = 0.008
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
L KKKKKKKKKK + K K+ E+
Sbjct: 22 LVKKKKKKKKKKAEDTAATAKAKKATAEDVSEG 54
Score = 34.6 bits (80), Expect = 0.014
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEY 50
KKKKKKKKKK + K ++ E+ E
Sbjct: 22 LVKKKKKKKKKKAEDTAATAKAKKATAEDVSEG 54
Score = 33.5 bits (77), Expect = 0.043
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
KKKKKKKKKK + + ++ E
Sbjct: 20 ADLVKKKKKKKKKKAEDTAATAKAKKATAEDV 51
Score = 30.4 bits (69), Expect = 0.56
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 21 KKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
KKKKKKKKKK + + ++ ++ + L EK K
Sbjct: 22 LVKKKKKKKKKKAEDTAATAKAKKATAEDVSEGAMFMEGFLGEKFHK 68
>gnl|CDD|218585 pfam05424, Duffy_binding, Duffy binding domain. This domain is
found in Plasmodium Duffy binding proteins. Plasmodium
vivax and Plasmodium knowlesi merozoites invade human
erythrocytes that express Duffy blood group surface
determinants. The Duffy receptor family is localised in
micronemes, an organelle found in all organisms of the
phylum Apicomplexa.
Length = 276
Score = 38.9 bits (91), Expect = 0.005
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
FC E +KK +K KKK K+KK K K+ + + +Y+K +D K ++K K
Sbjct: 196 EFCRERKKKLEKLKKKCKEKKCNKYCSKKCTKCKNACKKYKKWID-NKKKEWDKQKK 251
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 39.5 bits (93), Expect = 0.005
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKK 38
R +KK+K+K+K K KK+ + K
Sbjct: 399 RAEKKEKEKEKPKVKKRHRDTK 420
Score = 37.6 bits (88), Expect = 0.016
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEE 45
K+K K KK+ + K K++K EE
Sbjct: 407 KEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 37.6 bits (88), Expect = 0.017
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
++K+K K KK+ + K K+++ EE
Sbjct: 405 KEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 37.6 bits (88), Expect = 0.018
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
E+ ++K K KK+ + K K++K EE
Sbjct: 404 EKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 37.2 bits (87), Expect = 0.023
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKK 38
+KK+K+K+K K KK+ + K
Sbjct: 400 AEKKEKEKEKPKVKKRHRDTKN 421
Score = 37.2 bits (87), Expect = 0.024
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKK 38
L K+ +KK+K+K+K K KK+ +
Sbjct: 395 VLAKRAEKKEKEKEKPKVKKRHRD 418
Score = 36.8 bits (86), Expect = 0.028
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKK 38
++ +KK+K+K+K K KK+ +
Sbjct: 398 KRAEKKEKEKEKPKVKKRHRDT 419
Score = 36.8 bits (86), Expect = 0.031
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 9 RAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
+A +ELR K K +KK K KK K E++E+E
Sbjct: 369 KARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKE 406
Score = 36.8 bits (86), Expect = 0.031
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
E+ K+K+K K KK+ + K K+ + E
Sbjct: 401 EKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSE 433
Score = 36.5 bits (85), Expect = 0.044
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKK 38
E ++K+K+K K KK+ + K K
Sbjct: 400 AEKKEKEKEKPKVKKRHRDTKNIGK 424
Score = 36.1 bits (84), Expect = 0.057
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
+K+K+K+K K KK+ + K + + +E
Sbjct: 402 KKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 35.7 bits (83), Expect = 0.070
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKE 39
K+ +KK+K+K+K K KK+ ++
Sbjct: 397 AKRAEKKEKEKEKPKVKKRHRD 418
Score = 35.7 bits (83), Expect = 0.072
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 18 KKKKKKKKKKKKKKKKKKKKK 38
KK K+ +KK+K+K+K K K
Sbjct: 393 KKVLAKRAEKKEKEKEKPKVK 413
Score = 34.9 bits (81), Expect = 0.12
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 18 KKKKKKKKKKKKKKKKKKKKK 38
K K+ +KK+K+K+K K KK
Sbjct: 394 KVLAKRAEKKEKEKEKPKVKK 414
Score = 33.8 bits (78), Expect = 0.29
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 18 KKKKKKKKKKKKKKKKKKKKK 38
KK K+ +KK+K+K+K K
Sbjct: 392 SKKVLAKRAEKKEKEKEKPKV 412
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 37.4 bits (87), Expect = 0.006
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 9 RAHFCEE---LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
RA EE +++ K+K K+KK+KKKKKKKKK++ ++
Sbjct: 91 RAFLVEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAK 132
Score = 35.0 bits (81), Expect = 0.030
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKK 38
++ +KKKKKKKKKKK KK KKKK
Sbjct: 111 QKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 34.7 bits (80), Expect = 0.046
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKK 38
++ ++KKKKKKKKKKK KK KKK
Sbjct: 110 KQKKQKKKKKKKKKKKTSKKAAKKK 134
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 39.1 bits (91), Expect = 0.007
Identities = 14/39 (35%), Positives = 28/39 (71%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
+E + + K+++K+K++ K++KKKK+E+ +EE D K
Sbjct: 96 KEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPK 134
Score = 36.8 bits (85), Expect = 0.037
Identities = 11/39 (28%), Positives = 27/39 (69%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVD 55
K+++K+K++ K++KKKKK++ +EE ++ ++ +
Sbjct: 101 ESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKE 139
Score = 34.9 bits (80), Expect = 0.16
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
+E K++KKKKK+K K++ K +K KEE +E+ P E +K
Sbjct: 110 KEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEK 148
Score = 33.7 bits (77), Expect = 0.28
Identities = 11/36 (30%), Positives = 26/36 (72%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
K+ K + K+++K+K++ K+E+++++E+P E K
Sbjct: 94 PAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPK 129
Score = 33.3 bits (76), Expect = 0.46
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
+ K++ K+K+ K+K+K+K+KK EE + EE + ++V
Sbjct: 130 DRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKS 173
Score = 32.9 bits (75), Expect = 0.55
Identities = 14/36 (38%), Positives = 28/36 (77%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
E ++++K+K++ K++KKKKK+K KEE ++ + +E
Sbjct: 101 ESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEE 136
Score = 32.2 bits (73), Expect = 0.83
Identities = 13/43 (30%), Positives = 28/43 (65%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWK 59
+++ K++KKKKK+K K++ K ++ +EE +E ++ + K
Sbjct: 110 KEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEK 152
Score = 32.2 bits (73), Expect = 0.87
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
+E +KKKK+K K++ K +K K++ KE+ +E+ E +K V+
Sbjct: 114 KEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEP 157
Score = 31.0 bits (70), Expect = 1.9
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
+E R K+K+K+K+KK ++ + +++E++ E K
Sbjct: 138 KEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPK 176
Score = 31.0 bits (70), Expect = 2.1
Identities = 13/40 (32%), Positives = 28/40 (70%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
++K+K++ K++KKKKK+K K+E ++ + + + +K E
Sbjct: 106 EEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKE 145
Score = 31.0 bits (70), Expect = 2.1
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
+E K +K K++ K+K+ K+K+K++E++ EE D
Sbjct: 125 KEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDR 160
Score = 31.0 bits (70), Expect = 2.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
+ + K + KK KKK KKKE EEE++ ++ V +
Sbjct: 168 RVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGK 207
Score = 30.6 bits (69), Expect = 2.5
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
+ K +K K++ K+K+ K+K+KE+E++ EEP + ++ E
Sbjct: 124 PKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRE 167
Score = 30.6 bits (69), Expect = 2.6
Identities = 15/36 (41%), Positives = 27/36 (75%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
E+ + K++KKKKK+K K++ K +K +EE +E+ P +
Sbjct: 109 EKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPK 144
Score = 30.6 bits (69), Expect = 2.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKV 53
+ R + K + KK KKK KKK+ EEE++ + V
Sbjct: 165 KRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAV 204
Score = 29.5 bits (66), Expect = 5.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
EE ++++ + K + KK KKK K++E EEE
Sbjct: 162 EEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQ 196
Score = 29.5 bits (66), Expect = 6.6
Identities = 11/42 (26%), Positives = 28/42 (66%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVD 55
E+ +++ K +K K++ K+K+ K+KE+E+E++ + + +
Sbjct: 122 EKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEE 163
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 39.0 bits (91), Expect = 0.007
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
+ K KK KKKKKKKKK++K+ +E+E EP+
Sbjct: 270 SEMVKFKKPKKKKKKKKKRRKDLDEDELEPEA 301
Score = 37.4 bits (87), Expect = 0.023
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
E+ K KK KKKKKKKKK++K ++E E E E
Sbjct: 270 SEMVKFKKPKKKKKKKKKRRKDLDEDELEPEAEGL 304
Score = 36.7 bits (85), Expect = 0.035
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
K KK KKKKKKKKK++K +E+E E E
Sbjct: 273 VKFKKPKKKKKKKKKRRKDLDEDELEPEAE 302
Score = 33.6 bits (77), Expect = 0.39
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEY 50
KK KKKKKKKKK++K + + E E E
Sbjct: 276 KKPKKKKKKKKKRRKDLDEDELEPEAEGLGSSD 308
Score = 30.1 bits (68), Expect = 4.2
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKI 68
KKKKKKKKK++K + + + E E +K V+ E L + K
Sbjct: 278 PKKKKKKKKKRRKDLDEDELEPEAEGLGSSDSGSRKDVEEENARLEDSPKKR 329
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 36.4 bits (84), Expect = 0.009
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEE 40
E +K KKKKKK KK KK KK K++
Sbjct: 94 PEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 35.6 bits (82), Expect = 0.015
Identities = 17/29 (58%), Positives = 18/29 (62%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKE 39
H E K KKKKKK KK KK KK KK+
Sbjct: 92 HPPEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 33.7 bits (77), Expect = 0.066
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEE 41
K KKKKKK KK KK KK +++
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 33.7 bits (77), Expect = 0.074
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 22 KKKKKKKKKKKKKKKKKEEEEE 43
K KKKKKK KK KK KK +++
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 33.3 bits (76), Expect = 0.088
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 21 KKKKKKKKKKKKKKKKKKEEEE 42
K KKKKKK KK KK KK +++
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 31.8 bits (72), Expect = 0.32
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 23 KKKKKKKKKKKKKKKKEEEEEE 44
K KKKKKK KK KK K+ +++
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 30.6 bits (69), Expect = 0.75
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 25 KKKKKKKKKKKKKKEEEEEEEE 46
K KKKKKK KK KK ++ +++
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 30.6 bits (69), Expect = 0.82
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 24 KKKKKKKKKKKKKKKEEEEEEE 45
K KKKKKK KK KK ++ +++
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 38.1 bits (89), Expect = 0.015
Identities = 14/39 (35%), Positives = 32/39 (82%), Gaps = 1/39 (2%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
EEL+++K++K+ K++K+ +K KK+EE++++E ++ +K
Sbjct: 551 EELQREKEEKEALKEQKRLRKLKKQEEKKKKEL-EKLEK 588
Score = 31.9 bits (73), Expect = 1.3
Identities = 13/37 (35%), Positives = 27/37 (72%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEY 50
+E K++K+ +K KK+++KKKK+ ++ E+ + P E+
Sbjct: 560 KEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEF 596
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL. This family consists of GroEL,
the larger subunit of the GroEL/GroES cytosolic
chaperonin. It is found in bacteria, organelles derived
from bacteria, and occasionally in the Archaea. The
bacterial GroEL/GroES group I chaperonin is replaced a
group II chaperonin, usually called the thermosome in
the Archaeota and CCT (chaperone-containing TCP) in the
Eukaryota. GroEL, thermosome subunits, and CCT subunits
all fall under the scope of pfam00118 [Protein fate,
Protein folding and stabilization].
Length = 524
Score = 37.7 bits (88), Expect = 0.016
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 353 AVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMK 389
+ DAV+ TLGP+G + ++ G TI+ DG T+ K
Sbjct: 20 KLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAK 56
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation
factor 3 (eIF3). In yeast it is called Hcr1. The
Saccharomyces cerevisiae protein eIF3j (HCR1) has been
shown to be required for processing of 20S pre-rRNA and
binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 36.9 bits (86), Expect = 0.018
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEY 50
+ K KK K K ++K+K K++KEE+ E ++
Sbjct: 52 VAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDT 88
Score = 35.4 bits (82), Expect = 0.060
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
EE K K K KK K K ++K+K + E+EE+
Sbjct: 47 EEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLR 82
Score = 35.4 bits (82), Expect = 0.065
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
+ KK K K ++K+K K++K+++ E EE
Sbjct: 57 KAKKALKAKIEEKEKAKREKEEKGLRELEEDTP 89
Score = 34.6 bits (80), Expect = 0.092
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
EE ++K K K K KK K K +E+E+ + E +E E E +K
Sbjct: 43 EEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEK 96
Score = 33.9 bits (78), Expect = 0.20
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKL 65
EE + K K K KK K K ++K++ + E+EE + D L EKL
Sbjct: 46 EEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKL 97
Score = 33.9 bits (78), Expect = 0.20
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
E+ K+++K K K K KK K K EE+E+ + ++ +K +
Sbjct: 41 EDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84
Score = 33.1 bits (76), Expect = 0.34
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
EE +K+++K K K K KK K + EE+E+
Sbjct: 40 EEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKA 72
Score = 30.0 bits (68), Expect = 3.1
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
EE ++K+++K K K K KK K + EE+E+
Sbjct: 39 EEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEK 71
Score = 29.6 bits (67), Expect = 4.5
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
E+L+ +K K KKKK K K K +++ D+Y D
Sbjct: 193 EKLKAEKAAKGGKKKKGKAKAKLNVGGANDDD--DDYDGYDDDF 234
Score = 29.2 bits (66), Expect = 6.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
+E ++K+++K K K K KK + + EE+E
Sbjct: 38 DEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKE 70
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 37.6 bits (88), Expect = 0.018
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
RKK +KK++K +KK +K++ +K +++ E
Sbjct: 411 RKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAA 443
Score = 37.2 bits (87), Expect = 0.024
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
E +K +KK++K +KK +K++ +K +++ E + K D E
Sbjct: 409 AERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGE 452
Score = 36.4 bits (85), Expect = 0.043
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
L ++KK +KK++K +KK +K+E E+ +
Sbjct: 404 GNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAK 436
Score = 34.1 bits (79), Expect = 0.23
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 22 KKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWK 59
++KK +KK++K +KK E+EE E+ +K A K
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKK 445
Score = 34.1 bits (79), Expect = 0.23
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 3 IYKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
+ K Q +A E + +K KKK + KK K + E ++ +PD
Sbjct: 414 LRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPD 459
Score = 33.8 bits (78), Expect = 0.33
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 21 KKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
++KK +KK++K +KK E+EE E+ +
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAK 436
Score = 32.2 bits (74), Expect = 0.94
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
E + +K++ +K KKK + KK + + E
Sbjct: 421 AEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 30.7 bits (70), Expect = 2.9
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 5 KGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
K + +A +E +K KKK + KK K E ++ + +P
Sbjct: 420 KAEKKAE--KEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPDPL 461
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 36.3 bits (84), Expect = 0.021
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVD 55
RK KK KKK K+K +++K+ E ++++ +E + D
Sbjct: 60 RKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPD 98
Score = 35.9 bits (83), Expect = 0.028
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
R +K KK KKK K+K EEE++ E D+
Sbjct: 55 RPTTPRKPATTKKSKKKDKEKLTEEEKKPESDD 87
Score = 34.7 bits (80), Expect = 0.087
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
+K+ +K KK KKK K++ EEE++P+
Sbjct: 53 KKRPTTPRKPATTKKSKKKDKEKLTEEEKKPES 85
Score = 34.4 bits (79), Expect = 0.12
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
+K KK KKK K+K EEE++ E D+
Sbjct: 59 PRKPATTKKSKKKDKEKLTEEEKKPESDDD 88
Score = 34.0 bits (78), Expect = 0.15
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
+ ++ +K KK KKK K+K EEE++ + K
Sbjct: 52 KKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDK 89
Score = 33.6 bits (77), Expect = 0.18
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
+K KK KKK K+K +++++ E +++ E
Sbjct: 59 PRKPATTKKSKKKDKEKLTEEEKKPESDDDKTE 91
Score = 31.3 bits (71), Expect = 1.1
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVD 55
KK KKK K+K +++KK + ++++ EE ++ +
Sbjct: 65 TKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEE 102
Score = 30.1 bits (68), Expect = 2.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
++ KKK+ +K KK KK+++E+ E ++
Sbjct: 49 KQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEK 81
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 36.5 bits (85), Expect = 0.026
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
+++K+KKK K++KK KEE+E+ EEP
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
Score = 35.3 bits (82), Expect = 0.055
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
++K+KKK K++KK K++KE+ EE
Sbjct: 94 FEEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
Score = 34.5 bits (80), Expect = 0.097
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
+++K+KKK K++KK K+E+E+ EE
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
Score = 33.8 bits (78), Expect = 0.16
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 8 FRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEE 43
F + +K+KKK K++KK K++K++ EE
Sbjct: 87 FTPIYQYFEEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
Score = 33.0 bits (76), Expect = 0.32
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEE 45
+++K+KKK K++KK K+++E+ EE
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
Score = 30.7 bits (70), Expect = 1.7
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 22 KKKKKKKKKKKKKKKKKEEEEEEEEPDEY 50
+++K+KKK K++KK +EE+E+ + Y
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEPY 123
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 36.1 bits (84), Expect = 0.029
Identities = 13/36 (36%), Positives = 28/36 (77%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
E+ R+K++++K +KK+K+K+ KKK++ ++ E E +
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVK 44
Score = 35.4 bits (82), Expect = 0.054
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
E RK +KK+K+K+ KKK+ +K + EE + EE +K E
Sbjct: 15 REQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIE 58
Score = 33.4 bits (77), Expect = 0.25
Identities = 9/34 (26%), Positives = 26/34 (76%)
Query: 13 CEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
L ++++K++++K +KK+K+K+ K++E+ ++
Sbjct: 5 EALLEQRRRKREQRKARKKQKRKEAKKKEDAQKS 38
Score = 33.0 bits (76), Expect = 0.26
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKK 38
E L+K+K KK KKKKK KKK +
Sbjct: 182 ENLKKRKDDKKNKKKKKAKKKGRIL 206
Score = 31.5 bits (72), Expect = 0.80
Identities = 9/39 (23%), Positives = 30/39 (76%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
E L +++++K++++K +KK+K+K+ +++E+ ++ + +
Sbjct: 5 EALLEQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEV 43
Score = 30.7 bits (70), Expect = 1.4
Identities = 15/31 (48%), Positives = 25/31 (80%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
E+L KK K+K+K+KKK KK+ K+++E+ E+
Sbjct: 141 EKLLKKALKRKEKQKKKSKKEWKERKEKVEK 171
Score = 30.4 bits (69), Expect = 2.4
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
KK K+K+K+KKK KK+ K+ +E+ E++ E QK
Sbjct: 145 KKALKRKEKQKKKSKKEWKERKEKVEKKKAERQK 178
Score = 29.6 bits (67), Expect = 3.4
Identities = 10/38 (26%), Positives = 27/38 (71%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
+++++K++++K +KK+K+KE +++E+ + V E
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNE 46
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 36.0 bits (84), Expect = 0.031
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
+ +K+KKK K++KK KEE+++ EEP
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 33.7 bits (78), Expect = 0.18
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
+K+KKK K++KK K++K++ EE
Sbjct: 95 FEAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 33.3 bits (77), Expect = 0.26
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
+ +K+KKK K++KK K+E+++ EE
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 32.9 bits (76), Expect = 0.35
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 10 AHFCEELRKKKKKKKKKKKKKKKKKKKKKEEE 41
+F E ++KKK K++KK K++K K EE
Sbjct: 93 EYF-EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 30.6 bits (70), Expect = 2.1
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 22 KKKKKKKKKKKKKKKKKEEEEEEEEPDEY 50
+ +K+KKK K++KK +EE+++ + Y
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEPY 124
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 36.7 bits (85), Expect = 0.033
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
+ +K K KKK KK KKK+ K+ +++EEE E ++
Sbjct: 145 KAKKGKAKKKTKKSKKKEAKESSDKDDEEESESED 179
Score = 34.4 bits (79), Expect = 0.18
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 6 GQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDA 56
+ L + K KK K KKK KK KKK+ +E +++ +E + D
Sbjct: 130 ESIMEGLDKILGIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDE 180
Score = 33.7 bits (77), Expect = 0.28
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
KK K KKK KK KKK+ K+ ++++EEE E + +
Sbjct: 146 AKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEES 186
Score = 32.9 bits (75), Expect = 0.49
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
KKK KK KKK+ K+ K +EE E E+E
Sbjct: 149 GKAKKKTKKSKKKEAKESSDKDDEEESESEDESKS 183
Score = 32.1 bits (73), Expect = 0.99
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
++ + KKK KK KKK+ K+ K EEE E E+ +
Sbjct: 147 KKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESK 182
Score = 31.0 bits (70), Expect = 2.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 22 KKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
+ K KK K KKK KK K++E +E + ++ ++E
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESE 178
Score = 30.2 bits (68), Expect = 4.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 21 KKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
+ K KK K KKK KK KK+E +E + D+ ++ +
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESED 179
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 36.6 bits (84), Expect = 0.036
Identities = 25/67 (37%), Positives = 35/67 (52%)
Query: 9 RAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKI 68
+ H E K +K +KK KK KKKE++E+E+E D+ +K +K L LD
Sbjct: 176 QKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDS 235
Query: 69 HASGAQV 75
AS A V
Sbjct: 236 PASAASV 242
Score = 35.4 bits (81), Expect = 0.099
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVL 77
+KK KK KKK+KK+K+K++ K++++E E +D + AS A V
Sbjct: 196 EKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPASAASVAEADEASLANTVS 255
Query: 78 SKLP 81
P
Sbjct: 256 GTAP 259
Score = 34.3 bits (78), Expect = 0.22
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKV 53
+ L K K++KKK++K+K+ +++ E +E+ Q V
Sbjct: 92 QRLEKDKREKKKREKEKRGRRRHHSLGTESDEDIAPAQMV 131
Score = 33.1 bits (75), Expect = 0.44
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
EE R+ +++ +K K++KKK++K+K+ E
Sbjct: 85 EEERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTE 120
Score = 32.3 bits (73), Expect = 0.74
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
EE R +++ +K K++KKK++K+K+ + + + A+
Sbjct: 86 EERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESDEDIAPAQ 129
Score = 31.6 bits (71), Expect = 1.5
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
E K++KKK++K+K+ +++ E +E+ P + +V E
Sbjct: 95 EKDKREKKKREKEKRGRRRHHSLGTESDEDIAPAQMVDIVTEE 137
Score = 29.3 bits (65), Expect = 7.3
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
+KKK++K+K++KKKKKK + +
Sbjct: 281 KKKKQRKEKEEKKKKKKHHHHRCHHSDG 308
Score = 29.3 bits (65), Expect = 7.4
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
+K++K+K++KKKKKK + + E+P
Sbjct: 283 KKQRKEKEEKKKKKKHHHHRCHHSDGGAEQP 313
Score = 29.3 bits (65), Expect = 8.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEE 45
KKKK++K+K++KKKKKK +
Sbjct: 281 KKKKQRKEKEEKKKKKKHHHHRCHHSDG 308
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 35.1 bits (81), Expect = 0.039
Identities = 12/35 (34%), Positives = 26/35 (74%)
Query: 12 FCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
F EE K++K+ K+ ++K+ K KK+++E++E++
Sbjct: 91 FPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 31.3 bits (71), Expect = 0.78
Identities = 10/42 (23%), Positives = 26/42 (61%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKI 60
+K++K+ K+ ++K+ K K+E++E++E +K+ +
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTK 137
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 36.6 bits (86), Expect = 0.040
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 353 AVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMK 389
+ DAV+ TLGP+G + ++ G TI+ DG T+ K
Sbjct: 21 KLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAK 57
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 36.2 bits (84), Expect = 0.044
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGA 73
E + K + K+K K ++ K+K++K+ E E +EE +K+ +L +I A
Sbjct: 267 EPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQL------ARLKEIAKEVA 320
Query: 74 Q 74
Q
Sbjct: 321 Q 321
Score = 33.9 bits (78), Expect = 0.23
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
E K + K+K K ++ K+K++KE E E +E
Sbjct: 266 YEPINKPVRPKRKTKAQRNKEKRRKELEREAKE 298
Score = 32.8 bits (75), Expect = 0.63
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 13 CEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
+ + K+K K ++ K+K++K+ E E +EE+
Sbjct: 267 EPINKPVRPKRKTKAQRNKEKRRKELEREAKEEK 300
Score = 30.4 bits (69), Expect = 3.0
Identities = 9/40 (22%), Positives = 24/40 (60%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
+ K+K++K+ +++ K++K+ K++ + E K V +
Sbjct: 283 RNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQK 322
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 36.7 bits (84), Expect = 0.046
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
+ +KK ++ KK + K + + +E E EE E + E K + K
Sbjct: 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK 1385
Score = 35.1 bits (80), Expect = 0.15
Identities = 15/58 (25%), Positives = 32/58 (55%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHAS 71
+E +KK ++ KK + KKK ++ KK+ + +++ +E +K +A D+ A+
Sbjct: 1305 DEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAA 1362
Score = 34.7 bits (79), Expect = 0.17
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
+E +K + KKK + KK ++ KK +E ++ EE + + AE K ++L K
Sbjct: 1500 DEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553
Score = 33.6 bits (76), Expect = 0.38
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWK 59
+E +KK ++ KKK + KK KK+ +E +++ +E +K +A+ K
Sbjct: 1394 DEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKK 1439
Score = 33.6 bits (76), Expect = 0.40
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWK 59
EE +KK KKK ++KKK + KK+ EE++++ DE +K A+ K
Sbjct: 1374 EEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKK 1419
Score = 33.6 bits (76), Expect = 0.47
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGA 73
EE +K ++ KKK+ ++KKK ++ KK EEE + + +E +K + + K E+ K
Sbjct: 1699 EEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED-KKKAEEAKKDEEEKK 1757
Query: 74 QVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMK 111
++ K A + +++ + EED KR M+
Sbjct: 1758 KIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRME 1795
Score = 33.6 bits (76), Expect = 0.48
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHA 70
EE K K ++ KK ++ KKK ++ ++ EE+E+ +AE E+L K A
Sbjct: 1656 EEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEA 1712
Score = 32.8 bits (74), Expect = 0.81
Identities = 14/46 (30%), Positives = 30/46 (65%)
Query: 7 QFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
+ + EE +K ++ KK +++ K K ++ KKE EE++++ +E +K
Sbjct: 1706 ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKK 1751
Score = 32.8 bits (74), Expect = 0.82
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
E+ +K + KK+ ++ KK ++ KK+E EE+++ +E +K + E KI E+ K
Sbjct: 1685 EDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK-AEEENKIKAEEAKK 1737
Score = 32.4 bits (73), Expect = 0.86
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGA 73
+E +K ++KKK + KKK ++ KK +E +++ E E +K DA K E A+ A
Sbjct: 1293 DEAKKAEEKKKADEAKKKAEEAKKADEAKKKAE--EAKKKADAAKKKAEEAKKAAEAAKA 1350
Query: 74 Q 74
+
Sbjct: 1351 E 1351
Score = 32.0 bits (72), Expect = 1.1
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 14 EELRKKKK-KKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEK 64
EE +K + K + + + + +++ E E++ +E +K DA K EK
Sbjct: 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEK 1390
Score = 32.0 bits (72), Expect = 1.3
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 14 EELRKKKKKKKKKKK--KKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
+E +KK ++ KKK KK + KKK +E ++ EE + + AE ++ K
Sbjct: 1486 DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK 1541
Score = 32.0 bits (72), Expect = 1.3
Identities = 15/53 (28%), Positives = 32/53 (60%)
Query: 7 QFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWK 59
Q + EE +K ++ KK +++ K K ++ K+ EE++++ +E +K + E K
Sbjct: 1637 QLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK 1689
Score = 31.6 bits (71), Expect = 1.5
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWK 59
EE +KK ++ KK ++ +KK + K+E EE ++ +E +K E K
Sbjct: 1671 EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK 1716
Score = 31.6 bits (71), Expect = 1.5
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
+E +KK ++ KK + KKK ++ KK+ +E ++ + +K +A+
Sbjct: 1473 DEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAK 1516
Score = 31.3 bits (70), Expect = 1.9
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 14 EELRKKKKKKKKKKK--KKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
+E +KK ++ KKK KKK ++ KK E + E + AE K + K
Sbjct: 1318 DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK 1373
Score = 31.3 bits (70), Expect = 2.1
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWK 59
+ +KK ++KKK + KKK ++ KK+ +E ++ +K +A+ K
Sbjct: 1381 DAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKK 1426
Score = 31.3 bits (70), Expect = 2.2
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWK 59
E KK + KKK ++ KK + KK+ EE +++ DE +K +A+ K
Sbjct: 1467 EEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
Score = 30.9 bits (69), Expect = 2.6
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
E KKK ++ KK ++ +KK + ++E EE + E K +AE K E+L K
Sbjct: 1670 AEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
Score = 30.9 bits (69), Expect = 2.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
EE +K + KKK ++ KK + KKK EE ++ E
Sbjct: 1428 EEKKKADEAKKKAEEAKKADEAKKKAEEAKKAE 1460
Score = 30.9 bits (69), Expect = 2.9
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 5/44 (11%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEE-----EEEEEPDEYQK 52
+E +KK ++KKK + KKK ++ KK +E EE ++ +E +K
Sbjct: 1421 DEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK 1464
Score = 30.9 bits (69), Expect = 3.1
Identities = 20/80 (25%), Positives = 43/80 (53%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGA 73
EEL+K +++ K K ++ KK+ ++ K++ EE ++ +E +K + K +K ++I
Sbjct: 1719 EELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKE 1778
Query: 74 QVVLSKLPIGDVATQYFADR 93
V+ +L D + D+
Sbjct: 1779 AVIEEELDEEDEKRRMEVDK 1798
Score = 30.5 bits (68), Expect = 3.4
Identities = 10/43 (23%), Positives = 27/43 (62%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWK 59
+ + ++K + +KKK++ KK+ + +++ +E +K +A+ K
Sbjct: 1357 DEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKK 1399
Score = 30.1 bits (67), Expect = 4.3
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
EE +KK ++ KKK+ ++KKK ++ K+ EEE + + E K E+ K
Sbjct: 1629 EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKK 1682
Score = 30.1 bits (67), Expect = 4.5
Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
EE + K ++ KK +++KKK ++ KK+E EE+++ +E +K + E KI + K
Sbjct: 1616 EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK-AEEENKIKAAEEAK 1668
Score = 30.1 bits (67), Expect = 5.3
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 14 EELRKKKKKKK----KKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
+E +K ++KKK KK ++ KK ++KKK EE ++ E D+ + AE
Sbjct: 1537 DEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAE 1584
Score = 29.7 bits (66), Expect = 6.1
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWK 59
KK KKK + KKK ++KK+ +E +++ +E +K +A+ K
Sbjct: 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK 1452
Score = 29.3 bits (65), Expect = 7.7
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVD 55
E KKK++ KKK KKK ++KK+ +E +++ +E +K D
Sbjct: 1367 EAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAD 1408
Score = 29.3 bits (65), Expect = 8.0
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWK 59
KKK ++ KK + KKK ++ K+ EE +++ +E +K +A+ K
Sbjct: 1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
Score = 29.3 bits (65), Expect = 8.4
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
EE +K ++ KKK ++ KK + KKK EE ++ +
Sbjct: 1454 EEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD 1486
Score = 29.0 bits (64), Expect = 9.6
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 14 EELRKKKKKKK-KKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEK 64
EEL+K +++ K K ++ KK ++ KK+ EE ++ ++ +K +A K E
Sbjct: 1650 EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEA 1701
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 36.5 bits (85), Expect = 0.048
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 3 IYKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE--PDEY 50
K + +A EE + K++ K K + +K ++E P +Y
Sbjct: 12 ALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETMDPTQY 61
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 35.2 bits (81), Expect = 0.049
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEE----EPDEYQKVVDAEWKILYEK 64
KKKK +KKK KK KKKKKE+EE E E + ++ + + K+ YE
Sbjct: 52 KKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYEL 102
Score = 34.8 bits (80), Expect = 0.066
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
KKKK +KKK KK KKKK+E+EE E
Sbjct: 51 SKKKKTTPRKKKTTKKTKKKKKEKEEVPE 79
Score = 34.4 bits (79), Expect = 0.086
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
K KKKK +KKK KK KK+++E+EE P+
Sbjct: 49 KTSKKKKTTPRKKKTTKKTKKKKKEKEEVPEL 80
Score = 33.2 bits (76), Expect = 0.22
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
KK KKKK +KKK KK K++++E+EE E
Sbjct: 48 KKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPE 79
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 35.9 bits (83), Expect = 0.051
Identities = 12/35 (34%), Positives = 27/35 (77%)
Query: 9 RAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEE 43
+ E KK K++++K++++++K++KK++EEEE
Sbjct: 181 KKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEE 215
Score = 35.5 bits (82), Expect = 0.069
Identities = 12/31 (38%), Positives = 27/31 (87%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
+E KK K++++K++++++K++KK++EEEE
Sbjct: 185 QEWELKKLKQQQQKREEERRKQRKKQQEEEE 215
Score = 32.0 bits (73), Expect = 0.83
Identities = 10/27 (37%), Positives = 25/27 (92%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEE 45
KK K++++K++++++K++K+++EEEE
Sbjct: 189 LKKLKQQQQKREEERRKQRKKQQEEEE 215
Score = 31.2 bits (71), Expect = 1.4
Identities = 9/27 (33%), Positives = 25/27 (92%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEEEEEE 46
KK K++++K++++++K++++++EEEE
Sbjct: 189 LKKLKQQQQKREEERRKQRKKQQEEEE 215
Score = 30.1 bits (68), Expect = 3.5
Identities = 7/28 (25%), Positives = 26/28 (92%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEE 41
++ +++++++K++KK+++++++K+K EE
Sbjct: 195 QQQKREEERRKQRKKQQEEEERKQKAEE 222
Score = 29.3 bits (66), Expect = 5.1
Identities = 7/30 (23%), Positives = 28/30 (93%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEE 43
++ ++K++++++K++KK+++++++K++ EE
Sbjct: 193 KQQQQKREEERRKQRKKQQEEEERKQKAEE 222
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 35.4 bits (82), Expect = 0.057
Identities = 16/35 (45%), Positives = 16/35 (45%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
EE R KKKKKKKKKK KK E
Sbjct: 177 EEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVP 211
Score = 33.9 bits (78), Expect = 0.20
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
E L+ + ++++ KKKKKKKKKK KK
Sbjct: 170 ELLKARLEEERAKKKKKKKKKKTKKNNATGS 200
Score = 32.3 bits (74), Expect = 0.64
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKV 53
EL K + ++++ KKKKKKKKKK K+ +
Sbjct: 170 ELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSS 208
Score = 31.2 bits (71), Expect = 1.2
Identities = 12/43 (27%), Positives = 15/43 (34%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDA 56
E +KKKKKKKKK KK + +
Sbjct: 179 ERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQV 221
Score = 30.4 bits (69), Expect = 2.2
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKE 39
EE+ K + ++++ KKKKKKKKKK
Sbjct: 167 EEVELLKARLEEERAKKKKKKKKKKT 192
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This
is a family of uncharacterized proteins.
Length = 449
Score = 36.1 bits (83), Expect = 0.059
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 26 KKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
KK+ +K K+ EEE EEE D+ + D +
Sbjct: 33 KKENAIRKLGKEAEEEAMEEEDDDEEDDDDDD 64
Score = 35.4 bits (81), Expect = 0.091
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 24 KKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
KK+ +K K+ ++E EEE++ +E D E
Sbjct: 33 KKENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDE 66
Score = 34.6 bits (79), Expect = 0.14
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 22 KKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
KK+ +K K+ +++ EEE+++E D+
Sbjct: 33 KKENAIRKLGKEAEEEAMEEEDDDEEDD 60
Score = 34.2 bits (78), Expect = 0.21
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 21 KKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
KK+ +K K+ +++ EEE+++EE D+
Sbjct: 33 KKENAIRKLGKEAEEEAMEEEDDDEEDDD 61
Score = 33.4 bits (76), Expect = 0.35
Identities = 9/30 (30%), Positives = 21/30 (70%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
KK+ +K K+ +++ +EE+++EE+ D+
Sbjct: 33 KKENAIRKLGKEAEEEAMEEEDDDEEDDDD 62
Score = 32.7 bits (74), Expect = 0.64
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 23 KKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVD 55
KK+ +K K+ +++ EEE+++ ++ D
Sbjct: 33 KKENAIRKLGKEAEEEAMEEEDDDEEDDDDDDD 65
Score = 32.3 bits (73), Expect = 0.92
Identities = 8/31 (25%), Positives = 22/31 (70%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
KK+ +K K+ +++ ++E+++EE++ D+
Sbjct: 33 KKENAIRKLGKEAEEEAMEEEDDDEEDDDDD 63
Score = 31.9 bits (72), Expect = 1.1
Identities = 7/42 (16%), Positives = 27/42 (64%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
++K+ +K K+ +++ +++ ++EE++++ D+ + D +
Sbjct: 32 MKKENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDD 73
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 35.3 bits (82), Expect = 0.072
Identities = 12/47 (25%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 7 QFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE-PDEYQK 52
+ R E++ K +++++++ ++KK++KKK+E E + + E Q+
Sbjct: 263 KTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQR 309
Score = 32.6 bits (75), Expect = 0.60
Identities = 12/39 (30%), Positives = 26/39 (66%), Gaps = 6/39 (15%)
Query: 14 EELRKKKKKKKKKKKKKKKKKK------KKKEEEEEEEE 46
+E ++KK++KKK++++ K K +K EE+E +++
Sbjct: 281 QEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQ 319
Score = 32.2 bits (74), Expect = 0.74
Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 8/39 (20%)
Query: 14 EELRKKKKKKKKKKKKKKK--------KKKKKKEEEEEE 44
EE ++KK++KKK++++ K +K ++KE +++
Sbjct: 282 EEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed.
Length = 544
Score = 35.8 bits (83), Expect = 0.076
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 356 DAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMK 389
+AV+ TLGP+G + ++ G I+ DG T+ K
Sbjct: 25 NAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAK 58
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 33.8 bits (78), Expect = 0.077
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 13 CEELRKKKKKKKKKK--KKKKKKKKKKKEEEEEEEE 46
E LR+K+KKKK+K+ KK++ + ++E +E E
Sbjct: 73 KELLREKEKKKKRKRPGKKRRIALRLRRERTKERAE 108
Score = 33.8 bits (78), Expect = 0.080
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
K+KKKK+K+ KK++ + + E +E E +
Sbjct: 79 KEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRT 113
Score = 33.8 bits (78), Expect = 0.088
Identities = 10/33 (30%), Positives = 23/33 (69%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
E+ +KKK+K+ KK++ + ++++ +E E+E
Sbjct: 78 EKEKKKKRKRPGKKRRIALRLRRERTKERAEKE 110
Score = 33.4 bits (77), Expect = 0.093
Identities = 10/31 (32%), Positives = 23/31 (74%)
Query: 13 CEELRKKKKKKKKKKKKKKKKKKKKKEEEEE 43
E K++ +K+K+ +K ++KK K++++E+E
Sbjct: 99 RRERTKERAEKEKRTRKNREKKFKRRQKEKE 129
Score = 33.4 bits (77), Expect = 0.097
Identities = 8/25 (32%), Positives = 19/25 (76%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKK 38
++K+ +K ++KK K+++K+K+K
Sbjct: 106 RAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 30.7 bits (70), Expect = 0.85
Identities = 10/28 (35%), Positives = 22/28 (78%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
R K++ +K+K+ +K ++KK K+ ++E+E
Sbjct: 102 RTKERAEKEKRTRKNREKKFKRRQKEKE 129
Score = 30.3 bits (69), Expect = 1.3
Identities = 9/34 (26%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 14 EELRKKKKK--KKKKKKKKKKKKKKKKEEEEEEE 45
+E +KK+K+ KK++ + ++++ K+ E+E+
Sbjct: 79 KEKKKKRKRPGKKRRIALRLRRERTKERAEKEKR 112
Score = 30.3 bits (69), Expect = 1.3
Identities = 8/23 (34%), Positives = 19/23 (82%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKK 38
LR+++ K++ +K+K+ +K ++KK
Sbjct: 98 LRRERTKERAEKEKRTRKNREKK 120
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 35.6 bits (82), Expect = 0.084
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 12 FCEELRKKKKKKKKKKKKKKKKKKKKKE 39
C RKKKKKKK K+KKKKK ++ K+
Sbjct: 679 LCCGSRKKKKKKKSKEKKKKKNREASKQ 706
Score = 32.9 bits (75), Expect = 0.58
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
+KKKKKKK K+KKKKK ++ ++ E +E + + E
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQIHALENIEEGIEGSNNE 723
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 35.6 bits (82), Expect = 0.084
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
KK ++ KK KK KK E E EE
Sbjct: 1195 KKVSRQAPKKPAPKKTTKKASESETTEETY 1224
Score = 34.8 bits (80), Expect = 0.17
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
KK ++ KK KK KK E E E ++ E
Sbjct: 1195 KKVSRQAPKKPAPKKTTKKASESETTEETYGSSAMETE 1232
Score = 34.1 bits (78), Expect = 0.32
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEE 45
KK ++ KK KK KK E E EE
Sbjct: 1195 KKVSRQAPKKPAPKKTTKKASESETTEE 1222
Score = 32.9 bits (75), Expect = 0.69
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEY 50
KK ++ KK KK K+ E E + Y
Sbjct: 1192 GAAKKVSRQAPKKPAPKKTTKKASESETTEETY 1224
Score = 31.8 bits (72), Expect = 1.6
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
KK ++ KK KK ++ E E +E
Sbjct: 1190 ESGAAKKVSRQAPKKPAPKKTTKKASESETTEE 1222
Score = 30.6 bits (69), Expect = 3.4
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
R + KK ++ KK KK ++ E
Sbjct: 1188 RGESGAAKKVSRQAPKKPAPKKTTKKASESETT 1220
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 34.1 bits (79), Expect = 0.099
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
KKK KK KK+K+K++K+ +K ++ ++E ++
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEE 48
Score = 32.6 bits (75), Expect = 0.30
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
L KKK KK KK+K+K++K+ +K ++ ++E
Sbjct: 11 LVDKKKAKKAKKEKRKQRKQARKGADDGDDE 41
Score = 30.3 bits (69), Expect = 1.7
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 22 KKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVV 54
KKK KK KK+K+K++K+ + ++ DE ++
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQAA 46
Score = 30.3 bits (69), Expect = 1.8
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
K KK KK+K+K++K+ +K + ++E ++ E K AE
Sbjct: 16 KAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAE 55
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 35.2 bits (81), Expect = 0.10
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDA 56
KKK K+KK+KK+ + +EE EEE + D
Sbjct: 222 FKKKTKEKKEKKEASESTVKEESEEESGKRDVILEDE 258
Score = 34.8 bits (80), Expect = 0.14
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
KKK K+KK+KK+ + KEE EEE +
Sbjct: 222 FKKKTKEKKEKKEASESTVKEESEEESGKRD 252
Score = 32.1 bits (73), Expect = 0.87
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKIL 61
KK KKK K+KK+K+E E +E ++ IL
Sbjct: 212 PKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEESGKRDVIL 255
Score = 30.2 bits (68), Expect = 3.3
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
+ KKK K+KK+KK+ E +EE +E D
Sbjct: 214 KSNIMSSFFKKKTKEKKEKKEASESTVKEESEEESGKRDVI 254
Score = 29.4 bits (66), Expect = 6.3
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEK 64
EE +K+K+K+K+ KK + + + +E E E P E ++ + E L +K
Sbjct: 285 EETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKK 335
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase;
Provisional.
Length = 330
Score = 34.8 bits (81), Expect = 0.11
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 7 QFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEE 41
+ +A ++ K K +KKK+K++ K K + +
Sbjct: 55 ELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
Score = 34.4 bits (80), Expect = 0.17
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEE 45
L KK+ K K +KKK+K++ K + + +
Sbjct: 58 AALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
Score = 33.7 bits (78), Expect = 0.31
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKK 38
K +KKK+K++ K K K K +
Sbjct: 69 WHKAQKKKEKQEAKAAKAKSKPR 91
Score = 32.9 bits (76), Expect = 0.49
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
KK+ K K +KKK+K++ + + + +P
Sbjct: 63 KKELKAWHKAQKKKEKQEAKAAKAKSKP 90
Score = 31.0 bits (71), Expect = 1.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
EEL+ KK+ K K +KKK+K+E + + +
Sbjct: 54 EELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 34.4 bits (79), Expect = 0.11
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 13 CEELRKKKKKKKKKKKKKKKKKKKKKEEEEE 43
+ KKKK K KK K K KK + KK+ E
Sbjct: 86 TTAVEKKKKGKSKKNKLKGKKDEDKKKAREG 116
Score = 31.3 bits (71), Expect = 1.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEE 44
KKKK K KK K K KK + K++ E
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAREG 116
Score = 30.2 bits (68), Expect = 2.6
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 22 KKKKKKKKKKKKKKKKKEEEEEEEE 46
KKKK K KK K K KK E++++ E
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKARE 115
Score = 29.8 bits (67), Expect = 3.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 21 KKKKKKKKKKKKKKKKKKEEEEEEEE 46
KKKK K KK K K KK +++++ E
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAREG 116
Score = 29.4 bits (66), Expect = 4.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEEEEE 45
KKKK K KK K K KK + +++ E
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAREG 116
Score = 28.6 bits (64), Expect = 6.7
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 24 KKKKKKKKKKKKKKKEEEEEEEEPDEY 50
KKKK K KK K K K++E++++ + +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAREGW 117
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 34.1 bits (79), Expect = 0.12
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKI 60
E +K+K ++++K K K +KK++ ++ EP +E +
Sbjct: 123 EAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTV 169
Score = 32.2 bits (74), Expect = 0.57
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 9 RAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
R E+ + ++++K K K +KK+K + ++ E + P
Sbjct: 122 REAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTP 160
Score = 29.1 bits (66), Expect = 5.7
Identities = 8/34 (23%), Positives = 21/34 (61%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
E+ KK++ +K+K ++++K K + ++ +P
Sbjct: 116 EQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKP 149
Score = 28.4 bits (64), Expect = 8.5
Identities = 9/43 (20%), Positives = 21/43 (48%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
E + KK++ +K+K ++++K K + ++ QK
Sbjct: 116 EQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQH 158
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the
monomeric yeast and human topo I. Topo I enzymes are
divided into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. This family may represent more than
one structural domain.
Length = 215
Score = 34.2 bits (79), Expect = 0.13
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
K +K++KK K++KK K E+E+ EE
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEKLEEE 122
Score = 33.1 bits (76), Expect = 0.27
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 5 KGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
K F F + +K++KK K++KK K +KE+ EEE
Sbjct: 84 KCDFTQMF-AYFKAQKEEKKAMSKEEKKAIKAEKEKLEEE 122
Score = 32.3 bits (74), Expect = 0.50
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
K +K++KK K++KK K E+E+ EEE
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEKLEEE 122
Score = 30.8 bits (70), Expect = 1.6
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 22 KKKKKKKKKKKKKKKKKEEEEEEEEPDEY 50
K +K++KK K++KK + E+E+ +EY
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEKLEEEY 123
Score = 30.8 bits (70), Expect = 1.7
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEE 45
K +K++KK K++KK K ++E+ EEE
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEKLEEE 122
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL.
Length = 529
Score = 34.7 bits (80), Expect = 0.15
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 355 VDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLV 402
+AV TLGP+G + ++ + G I NDG TI K +++ T V
Sbjct: 23 AEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGV 70
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 34.6 bits (80), Expect = 0.15
Identities = 10/32 (31%), Positives = 26/32 (81%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
+KKK++KK+++K+ K+ +E+++++E+ D+
Sbjct: 179 SDSEKKKQRKKQRRKRSKELREDDDDDEDEDD 210
Score = 34.6 bits (80), Expect = 0.16
Identities = 10/32 (31%), Positives = 26/32 (81%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
+KKK++KK+++K+ K+ ++ ++++E+E+ D
Sbjct: 181 SEKKKQRKKQRRKRSKELREDDDDDEDEDDDG 212
Score = 33.4 bits (77), Expect = 0.32
Identities = 10/32 (31%), Positives = 26/32 (81%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
+KKK++KK+++K+ K+ ++ +++E+E++ E
Sbjct: 182 EKKKQRKKQRRKRSKELREDDDDDEDEDDDGE 213
Score = 33.1 bits (76), Expect = 0.40
Identities = 9/33 (27%), Positives = 24/33 (72%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
+KKK++KK+++K+ K+ E+++++E ++
Sbjct: 177 HSSDSEKKKQRKKQRRKRSKELREDDDDDEDED 209
Score = 30.4 bits (69), Expect = 3.2
Identities = 9/30 (30%), Positives = 24/30 (80%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
KKK++KK+++K+ K+ ++ ++E+E+++
Sbjct: 182 EKKKQRKKQRRKRSKELREDDDDDEDEDDD 211
>gnl|CDD|206050 pfam13879, KIAA1430, KIAA1430 homologue. This is a family of
KIAA1430 homologues. The function is not known.
Length = 98
Score = 32.2 bits (74), Expect = 0.16
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVL 77
K K ++ K KK ++EEE ++ E +IL EK+ +I V L
Sbjct: 10 KSSIDTKPPRRPAHLLLKLKKLQQEEER-----LAEIERENQILLEKITRIMRRKGSVDL 64
Query: 78 SK 79
SK
Sbjct: 65 SK 66
>gnl|CDD|217787 pfam03910, Adeno_PV, Adenovirus minor core protein PV.
Length = 336
Score = 34.4 bits (79), Expect = 0.18
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEY 50
+ K + K +K K+ KK+KK+EE++E ++ E+
Sbjct: 20 GPRPVKDEAKPRKIKRVKKRKKREEKDELDDEVEF 54
Score = 33.3 bits (76), Expect = 0.33
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
E+ + K + K +K K+ KK+K+ EE++E DE
Sbjct: 17 EIYGPRPVKDEAKPRKIKRVKKRKKREEKDELDDE 51
Score = 31.3 bits (71), Expect = 1.7
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 21 KKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVV 54
+ K + K +K K+ KK+++ EE++E D+ + V
Sbjct: 22 RPVKDEAKPRKIKRVKKRKKREEKDELDDEVEFV 55
>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain.
This presumed domain is found at the N-terminus of
Ribosomal L30 proteins and has been termed RL30NT or
NUC018.
Length = 71
Score = 31.4 bits (72), Expect = 0.18
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKK 37
E+LR K+ KK+ KK +KKK+K
Sbjct: 10 EKLRAKRAKKRAAKKAARKKKRKL 33
Score = 30.3 bits (69), Expect = 0.48
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVD 55
R KK+ KK +KKK+K K+ E+ +E + +
Sbjct: 14 AKRAKKRAAKKAARKKKRKLIFKRAEKYVKEYRAAERDEIR 54
Score = 28.3 bits (64), Expect = 2.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 19 KKKKKKKKKKKKKKKKKKKKE 39
+ K+ KK+ KK +KKK+K
Sbjct: 13 RAKRAKKRAAKKAARKKKRKL 33
Score = 28.0 bits (63), Expect = 2.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEE 40
K + K+ KK+ KK +KKK++
Sbjct: 10 EKLRAKRAKKRAAKKAARKKKRKL 33
Score = 28.0 bits (63), Expect = 2.7
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
R +K + K+ KK+ KK +KK+ + + ++Y K
Sbjct: 8 RNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEKYVK 43
Score = 26.8 bits (60), Expect = 7.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
+ KK+ KK +KKK+K K+ E+ +E
Sbjct: 14 AKRAKKRAAKKAARKKKRKLIFKRAEKYVKE 44
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 34.7 bits (80), Expect = 0.18
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 8 FRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
FR ++ K ++K KKKKKK+KKKEEE + EE
Sbjct: 725 FRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREE 763
Score = 32.4 bits (74), Expect = 0.85
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEE 43
EE KKKKKK+KKK+++ K+++K + E E
Sbjct: 742 EEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
Score = 32.4 bits (74), Expect = 1.1
Identities = 12/27 (44%), Positives = 22/27 (81%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEE 41
+ ++K KKKKKK+KKK+++ K++E+
Sbjct: 739 DSVEEKTKKKKKKEKKKEEEYKREEKA 765
Score = 31.6 bits (72), Expect = 1.5
Identities = 14/23 (60%), Positives = 20/23 (86%)
Query: 24 KKKKKKKKKKKKKKKEEEEEEEE 46
++K KKKKKK+KKK+EE + EE+
Sbjct: 742 EEKTKKKKKKEKKKEEEYKREEK 764
Score = 31.2 bits (71), Expect = 2.2
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
E + ++K KKKKKK+KKK++E + EE+
Sbjct: 733 AEFKISDSVEEKTKKKKKKEKKKEEEYKREEKA 765
Score = 30.8 bits (70), Expect = 3.0
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 5 KGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
+F+ E + KKKKKK+KKK+++ K+++K E E
Sbjct: 732 DAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
Score = 30.5 bits (69), Expect = 3.9
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
K + K ++K KKKKKKE+++EEE E +
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKA 765
Score = 30.5 bits (69), Expect = 4.1
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 3 IYKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEE 45
K K KKKKKK+KKK+++ K+++K E E
Sbjct: 729 NGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
Score = 29.7 bits (67), Expect = 6.3
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
+ + K ++K KKKKKK++++EEE + +E ++ AE
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
Score = 29.7 bits (67), Expect = 6.8
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILY 62
+ K ++K KKKKKK+KK+EEE + E ++ +A IL+
Sbjct: 734 EFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAEAWDSILF 778
Score = 29.7 bits (67), Expect = 7.3
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 22 KKKKKKKKKKKKKKKKKEEE 41
+ KK+K KK+ K E E
Sbjct: 1563 ESDIKKRKNKKQYKSNTEAE 1582
>gnl|CDD|221012 pfam11169, DUF2956, Protein of unknown function (DUF2956). This
family of proteins with unknown function appears to be
restricted to Gammaproteobacteria.
Length = 103
Score = 31.9 bits (73), Expect = 0.20
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 15 ELRKKKKKKKKK---KKKKKKKKKKKKEEEEEEEEPDEYQKV 53
KK++K K + K +K++ K K+++ ++EE
Sbjct: 37 AEYKKQQKAKAREADKARKQQLKAKQRQAANDDEEDTIESVT 78
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region.
This domain is the C-terminal end of ribosomal L18/L5
proteins.
Length = 93
Score = 31.8 bits (73), Expect = 0.20
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
+KKK+KK+ K + K+ KK E+ +
Sbjct: 61 RKKKEKKEVKAESKRYNAKKLTLEQRKA 88
>gnl|CDD|234045 TIGR02876, spore_yqfD, sporulation protein YqfD. YqfD is part of
the sigma-E regulon in the sporulation program of
endospore-forming Gram-positive bacteria. Mutation
results in a sporulation defect in Bacillus subtilis.
Members are found in all currently known
endospore-forming bacteria, including the genera
Bacillus, Symbiobacterium, Carboxydothermus,
Clostridium, and Thermoanaerobacter [Cellular processes,
Sporulation and germination].
Length = 382
Score = 33.9 bits (78), Expect = 0.22
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLD 66
E + K+K +K K++ +K K+K E+E ++E D K+V KIL E+++
Sbjct: 314 ETYYEVKEKVEKVTKEEAIEKAKEKAEKELKKELDPNAKIVSD--KILSERVE 364
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in
Williams-Beuren syndrome. This domain family is found
in eukaryotes, and is typically between 72 and 83 amino
acids in length. The family is found in association
with pfam08241. This family is made up of
S-adenosylmethionine-dependent methyltransferases. The
proteins are deleted in Williams-Beuren syndrome (WBS),
a complex developmental disorder with multisystemic
manifestations including supravalvular aortic stenosis
(SVAS) and a specific cognitive phenotype.
Length = 85
Score = 31.5 bits (72), Expect = 0.23
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKE 39
++R+ ++ ++KKKKKKK KKK KE
Sbjct: 30 SKVRRISQRNRRKKKKKKKLKKKSKE 55
Score = 31.5 bits (72), Expect = 0.24
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 6 GQFRAHFCEELRKKKKKKKKKKKKKKKK--KKKKKE 39
R ++KKKKKKK KKK K +KKE
Sbjct: 27 IDASKVRRISQRNRRKKKKKKKLKKKSKEWILRKKE 62
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 32.8 bits (75), Expect = 0.27
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
+ K + K+KKK++ K K E+E+ + EP
Sbjct: 114 PPETKTESKEKKKREVPKPKTEKEKPKTEP 143
Score = 30.5 bits (69), Expect = 1.4
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
E+ + K + K+KKK++ K K +KE+ + E +
Sbjct: 112 EDPPETKTESKEKKKREVPKPKTEKEKPKTEPKK 145
Score = 29.7 bits (67), Expect = 2.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
E + K + K+KKK++ K K E+E+ +
Sbjct: 109 TEQEDPPETKTESKEKKKREVPKPKTEKEKPKT 141
>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich
region. This highly conserved region is found towards
the C-terminus of the transmembrane domain. The
function is unclear.
Length = 151
Score = 32.6 bits (74), Expect = 0.29
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKE-------EEEEEEEPDEYQKVVDAE 57
K KKKK+K +KK K KKK+E E E +E E + +++ E
Sbjct: 24 KSDKKKKEKVSEKKGKSKKKEEKPNGKIPEHEPNQEVTEVEVIIEKE 70
>gnl|CDD|225826 COG3288, PntA, NAD/NADP transhydrogenase alpha subunit [Energy
production and conversion].
Length = 356
Score = 33.5 bits (77), Expect = 0.30
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 27 KKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLS 78
KK++ + K E+EE Y K + E+ +L A +V++
Sbjct: 199 KKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVAEQAKEVDIVIT 250
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 33.2 bits (76), Expect = 0.31
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
E+ KK K K K K K K K K + + ++ +
Sbjct: 91 EKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTA 125
Score = 33.2 bits (76), Expect = 0.32
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
E+ + +KK KK K K K K K K K + + + + + A
Sbjct: 86 EKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129
Score = 29.8 bits (67), Expect = 3.6
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
E K K+K K +KK KK K K K + + + + K
Sbjct: 78 EPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPP 121
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called
The RES complex, pre-mRNA retention and splicing
complex. Subunits of this complex are not essential for
viability of yeasts but they are required for efficient
splicing in vitro and in vivo. Furthermore,
inactivation of this complex causes pre-mRNA leakage
from the nucleus. Bud13 contains a unique,
phylogenetically conserved C-terminal region of unknown
function.
Length = 141
Score = 32.3 bits (74), Expect = 0.32
Identities = 11/36 (30%), Positives = 25/36 (69%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
R K + ++K+++K+++K+E+E +EE+ E+ K
Sbjct: 5 RDKSGRIIDIEEKREEKEREKEEKERKEEKEKEWGK 40
Score = 29.6 bits (67), Expect = 2.8
Identities = 14/46 (30%), Positives = 32/46 (69%), Gaps = 7/46 (15%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKK-------KKEEEEEEEEPDEYQK 52
EE R++K+++K++K++K++K+K+ K+E E+ EE ++ +
Sbjct: 15 EEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKN 60
>gnl|CDD|216337 pfam01159, Ribosomal_L6e, Ribosomal protein L6e.
Length = 108
Score = 31.4 bits (72), Expect = 0.32
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 10 AHFCEELRKKKKKKKKKKKKK---KKKKKKKKEEEEEEEEPDEYQKVVDA 56
+E K++KKKKKKK + +KK+KK+ E+ + + QK VDA
Sbjct: 30 EKINDEYFKREKKKKKKKSEGEFFAEKKEKKEVSEQRKAD----QKAVDA 75
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 33.4 bits (77), Expect = 0.34
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 1 VQIYKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
++ Y+ + E+ +KK KK KK K ++ ++ E E EEP+
Sbjct: 78 LKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEEPEP 126
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 33.1 bits (76), Expect = 0.37
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKK 38
+ + K++ KKKK K+ K K KK
Sbjct: 251 KRKSKEEIKKKKPKESKGVKALKK 274
Score = 32.3 bits (74), Expect = 0.69
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 18 KKKKKKKKKKKKKKKKKKKKK 38
K++ KKKK K+ K K KK
Sbjct: 255 KEEIKKKKPKESKGVKALKKV 275
Score = 31.5 bits (72), Expect = 1.1
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKK 38
E +KK K+ K K KK K K
Sbjct: 257 EIKKKKPKESKGVKALKKVVAKGMK 281
Score = 30.8 bits (70), Expect = 1.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKK 38
EE++KKK K+ K K KK K
Sbjct: 256 EEIKKKKPKESKGVKALKKVVAKGM 280
Score = 30.0 bits (68), Expect = 3.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKK 38
E ++K K++ KKKK K+ K K
Sbjct: 249 EKKRKSKEEIKKKKPKESKGVKAL 272
Score = 29.6 bits (67), Expect = 5.4
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKK 38
+ KKKK K+ K K KK K
Sbjct: 254 SKEEIKKKKPKESKGVKALKKVVAK 278
Score = 29.2 bits (66), Expect = 5.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEE 40
KK+K K++ KKKK K+ K K
Sbjct: 250 KKRKSKEEIKKKKPKESKGVKAL 272
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated
C-terminal domain. This domain is found in a number of
different types of plant proteins including NAM-like
proteins.
Length = 147
Score = 32.0 bits (73), Expect = 0.39
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
+KK K+K ++ K K KK++ E+E+E+EE
Sbjct: 65 RKKAKEKLRRDKLKAKKEEAEKEKEKEE 92
Score = 32.0 bits (73), Expect = 0.40
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 17 RKKKKKKKKKKKKKKKKK---KKKKEEEEEEEEPDEYQK 52
RKK K+K ++ K K KK+ K+K++EE + E +K
Sbjct: 65 RKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEK 103
Score = 31.2 bits (71), Expect = 0.78
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 21 KKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWK 59
+KK K+K ++ K K KK+E E+E+E+ + + K + K
Sbjct: 65 RKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEK 103
Score = 29.3 bits (66), Expect = 3.6
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
EE K+K+K+++ K + +K++ E E+++ E ++
Sbjct: 82 EEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKE 120
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 33.3 bits (76), Expect = 0.42
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
EEL +KKKK++K K+K+ KK K ++E + +
Sbjct: 16 EELERKKKKEEKAKEKELKKLKAAQKEAKAK 46
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 33.7 bits (77), Expect = 0.42
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 24 KKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLD 66
K+ K+KK++K ++K EE + EE +E+++ + LYEK++
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVN 319
Score = 30.2 bits (68), Expect = 4.0
Identities = 13/37 (35%), Positives = 26/37 (70%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVD 55
K+KK++K ++K ++ K ++ +EE EEEE Y ++ +
Sbjct: 280 KEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYE 316
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed.
Length = 545
Score = 33.3 bits (76), Expect = 0.47
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 356 DAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMK 389
+AV+ TLGP+G + +I G I+ DG T+ K
Sbjct: 25 NAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAK 58
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 33.0 bits (76), Expect = 0.48
Identities = 11/52 (21%), Positives = 21/52 (40%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKI 68
K K K KKK K + + ++ E+ + K D + + L++
Sbjct: 79 TKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQA 130
Score = 32.3 bits (74), Expect = 0.94
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKI 68
K KKK K + KK +K+ ++++ Y K +D + + D
Sbjct: 88 AKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDD 138
Score = 31.5 bits (72), Expect = 1.5
Identities = 10/51 (19%), Positives = 18/51 (35%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKI 68
K K KKK K + K+ E++ + + +L + D
Sbjct: 84 KAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDD 134
Score = 31.1 bits (71), Expect = 1.8
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHAS 71
KKK K K K KKK ++E + + E + +D + + Y K +
Sbjct: 75 PKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQ 129
Score = 31.1 bits (71), Expect = 1.9
Identities = 14/54 (25%), Positives = 19/54 (35%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
E KKK K K K KKK ++E + +K + L D
Sbjct: 71 ESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDI 124
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 30.7 bits (70), Expect = 0.48
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 26 KKKKKKKKKKKKKEEEEEEEEPD 48
+++KK+EEEEEEE+ D
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDDD 82
Score = 29.5 bits (67), Expect = 1.2
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 25 KKKKKKKKKKKKKKEEEEEEEE 46
+++KK++EEEEEE++
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDD 81
Score = 29.5 bits (67), Expect = 1.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 28 KKKKKKKKKKKEEEEEEEEPDE 49
+++K+EEEEEEE D+
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDD 81
Score = 28.4 bits (64), Expect = 3.0
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 24 KKKKKKKKKKKKKKKEEEEEEE 45
+++KK+++EEEEE++
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDD 81
Score = 27.6 bits (62), Expect = 6.2
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 23 KKKKKKKKKKKKKKKKEEEEEE 44
+++KK++++EEEE++
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDD 81
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 32.0 bits (73), Expect = 0.51
Identities = 10/53 (18%), Positives = 13/53 (24%)
Query: 5 KGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
K F L + + KKKK + E P A
Sbjct: 99 KPSKLELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAA 151
Score = 28.9 bits (65), Expect = 5.3
Identities = 6/31 (19%), Positives = 8/31 (25%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
KKKK + + E E
Sbjct: 122 TTPKKKKAAAEAAAAEAAAPAAEAAAAAAAE 152
Score = 28.5 bits (64), Expect = 6.0
Identities = 7/36 (19%), Positives = 10/36 (27%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
E KKKK + + E +E
Sbjct: 119 AEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEE 154
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 33.1 bits (76), Expect = 0.54
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
R K+ + + ++ +KKK + E+++ E D +
Sbjct: 1340 RVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDED 1380
Score = 31.6 bits (72), Expect = 1.7
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGA 73
+ ++ K K K K K +K K KKKE+++++ D+ +K + +K
Sbjct: 1153 AKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDK 1212
Score = 30.8 bits (70), Expect = 3.2
Identities = 6/36 (16%), Positives = 17/36 (47%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
+ + + ++ +KKK E++++ E D+
Sbjct: 1340 RVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDD 1375
Score = 30.0 bits (68), Expect = 5.3
Identities = 12/54 (22%), Positives = 26/54 (48%)
Query: 7 QFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKI 60
+ +E+ K+++ K K K K K +K K +++E++++ K A
Sbjct: 1143 EQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVG 1196
Score = 29.2 bits (66), Expect = 8.5
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 16 LRKKKKKKKKKKKKK------KKKKKKKKEEEEEEEEPDEYQKVVDAE 57
RKKK K + K+ ++ +KKK + E++ D + E
Sbjct: 1332 ARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDE 1379
>gnl|CDD|220644 pfam10238, Eapp_C, E2F-associated phosphoprotein. This entry
represents the conserved C-terminal portion of an E2F
binding protein. E2F transcription factors play an
essential role in cell proliferation and apoptosis and
their activity is frequently deregulated in human
cancers. E2F activity is regulated by a variety of
mechanisms, frequently mediated by proteins binding to
individual members or a subgroup of the family. EAPP
interacts with a subset of E2F factors and influences
E2F-dependent promoter activity. EAPP is present
throughout the cell cycle but disappears during
mitosis.
Length = 128
Score = 31.2 bits (71), Expect = 0.60
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 3 IYKGQFRAHF---C----EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
IYK Q+RA F C E++ K +KK+++ KK + E
Sbjct: 48 IYKNQYRAMFAINCKVDEEKVLYSKPINRKKRRRNSKKNELNPNNTATSEI 98
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 32.3 bits (74), Expect = 0.62
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
K K K K KK +++ K++ K E P E
Sbjct: 102 KPKPKPKPVKKVEEQPKREVKPVEPRPASPFE 133
Score = 30.4 bits (69), Expect = 2.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
E + K K K K K KK +++ K+E + E P
Sbjct: 96 EPKPKPKPKPKPKPVKKVEEQPKREVKPVEPRP 128
Score = 28.9 bits (65), Expect = 6.7
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQ 51
K K K K K K KK +++ + E + EP
Sbjct: 97 PKPKPKPKPKPKPVKKVEEQPKREVKPVEPRPAS 130
Score = 28.9 bits (65), Expect = 7.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
+ K + K K K K K K KK +E+ + E +P E
Sbjct: 92 IPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVE 125
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 32.9 bits (75), Expect = 0.63
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
E+L+KK K KKKKK K E + + +
Sbjct: 123 EKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPK 158
Score = 31.0 bits (70), Expect = 2.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
+ +K KKK K KKKKK ++E + K
Sbjct: 121 KTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNK 156
Score = 29.4 bits (66), Expect = 7.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
K +K KKK K KKKKK ++E
Sbjct: 120 PKTEKLKKKITVNKSTNKKKKKVLSSKDEL 149
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 118
Score = 31.1 bits (71), Expect = 0.63
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 5 KGQFRAHFCEELRKKKKKKKKKKKKKKK------KKKKKKEEEEE 43
KG+ E + K+K+KKKKKKK+ + ++KKKEE E
Sbjct: 62 KGKTAREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEELAE 106
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 32.6 bits (74), Expect = 0.67
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEY 50
+ K KKKKKK K KKK KK + +++ DEY
Sbjct: 236 GDEEKSKKKKKKLAKNKKKLDDDKKGKRGGDDDADEY 272
Score = 31.5 bits (71), Expect = 1.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
EE KK KK KK K KK K++ + ++ D+
Sbjct: 329 EEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDSDD 364
Score = 31.1 bits (70), Expect = 1.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
EE KKKKKK K KKK KK K +++ + +
Sbjct: 238 EEKSKKKKKKLAKNKKKLDDDKKGKRGGDDDADEYDSDD 276
Score = 31.1 bits (70), Expect = 2.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
L KK KK KK K KK K + ++ ++ D
Sbjct: 334 LSKKGKKLKKLKGKKNGLDKDDSDSGDDSDDSD 366
Score = 29.2 bits (65), Expect = 9.0
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 14 EELRKKKKKKKKKKKKKKKK-----KKKKKEEEEEEEEPD 48
E+ ++K KKKKKK K KK KK K+ +++ +E D
Sbjct: 234 EDGDEEKSKKKKKKLAKNKKKLDDDKKGKRGGDDDADEYD 273
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 32.0 bits (73), Expect = 0.68
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 10 AHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
E+L +KK K+ + + ++ +K EEEEEEEE ++
Sbjct: 147 EDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEED 186
Score = 31.3 bits (71), Expect = 1.2
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 12 FCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKI 60
F +EL KK KK K K+K EEE D +K+ E K+
Sbjct: 112 FPKELYSVMGINKKAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKL 160
Score = 29.0 bits (65), Expect = 6.5
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEY 50
L KK K+ + + ++ +K +++EEEEEEE+ D
Sbjct: 154 SMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFD 190
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 32.0 bits (73), Expect = 0.68
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKE 39
EE KKKK+ K K K+ KKKKKK+
Sbjct: 81 EERLKKKKRVKTKAYKEPTKKKKKKD 106
Score = 30.0 bits (68), Expect = 3.5
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
+ R+ ++KK + K +K+K+KKK+KE +EE
Sbjct: 158 KEREIRRKKIQAKARKRKEKKKEKELTQEE 187
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 32.4 bits (74), Expect = 0.69
Identities = 13/31 (41%), Positives = 25/31 (80%)
Query: 22 KKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
++K++KK++++K K+EE +EEEE +E +K
Sbjct: 42 EEKEEKKEEEEKTTDKEEEVDEEEEKEEKKK 72
Score = 31.7 bits (72), Expect = 1.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEE 42
EE ++++K++KKKK KK K+ E E
Sbjct: 58 EEEVDEEEEKEEKKKKTKKVKETTTEWEL 86
Score = 31.7 bits (72), Expect = 1.3
Identities = 18/55 (32%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKI 68
EE ++K++KK++++K K+++ EEEE+EE+ + +KV + + +E L+K
Sbjct: 38 EEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTE--WELLNKT 90
>gnl|CDD|218652 pfam05602, CLPTM1, Cleft lip and palate transmembrane protein 1
(CLPTM1). This family consists of several eukaryotic
cleft lip and palate transmembrane protein 1 sequences.
Cleft lip with or without cleft palate is a common birth
defect that is genetically complex. The nonsyndromic
forms have been studied genetically using linkage and
candidate-gene association studies with only partial
success in defining the loci responsible for orofacial
clefting. CLPTM1 encodes a transmembrane protein and has
strong homology to two Caenorhabditis elegans genes,
suggesting that CLPTM1 may belong to a new gene family.
This family also contains the human cisplatin resistance
related protein CRR9p which is associated with
CDDP-induced apoptosis.
Length = 437
Score = 32.3 bits (74), Expect = 0.75
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 23 KKKKKKKKKK----KKKKKKEEEEEEEEPDEYQK 52
KKK KKK K +K++ EEE+ PD+
Sbjct: 148 LPKKKVKKKNLLGGKSEKEEPEEEKTPAPDKIVS 181
Score = 32.3 bits (74), Expect = 0.79
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 27 KKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWK 59
KKK KKK + E+EEP+E + +
Sbjct: 148 LPKKKVKKKNLLGGKSEKEEPEEEKTPAPDKIV 180
>gnl|CDD|217611 pfam03552, Cellulose_synt, Cellulose synthase. Cellulose, an
aggregate of unbranched polymers of beta-1,4-linked
glucose residues, is the major component of wood and
thus paper, and is synthesised by plants, most algae,
some bacteria and fungi, and even some animals. The
genes that synthesise cellulose in higher plants differ
greatly from the well-characterized genes found in
Acetobacter and Agrobacterium sp. More correctly
designated as 'cellulose synthase catalytic subunits',
plant cellulose synthase (CesA) proteins are integral
membrane proteins, approximately 1,000 amino acids in
length. There are a number of highly conserved residues,
including several motifs shown to be necessary for
processive glycosyltransferase activity.
Length = 716
Score = 32.4 bits (74), Expect = 0.75
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 13 CEELRKKKKKKKKKKKKKKKKKKKKKE--EEEEEEEPDEYQK 52
C RKK K K KKK K+K+ + E+ +E DE +K
Sbjct: 309 CFGRRKKPKSASKAKKKDSKRKESEAPIFNLEDIDEGDEDEK 350
>gnl|CDD|220611 pfam10169, Laps, Learning-associated protein. This is a family of
121-amino acid secretory proteins. Laps functions in the
regulation of neuronal cell adhesion and/or movement and
synapse attachment. Laps binds to the ApC/EBP (Aplysia
CCAAT/enhancer binding protein) promoter and activates
the transcription of ApC/EBP mRNA.
Length = 124
Score = 31.0 bits (70), Expect = 0.75
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKK 38
R+ KK KKK++KKKKKKK K
Sbjct: 101 RQAKKLKKKREKKKKKKKGAKN 122
Score = 30.6 bits (69), Expect = 0.91
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 6 GQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKK 38
GQ+ A + KK KKK++KKKKKKK K
Sbjct: 92 GQYPAWMNQRQAKKLKKKREKKKKKKKGAKNLA 124
Score = 28.3 bits (63), Expect = 5.9
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKE 39
+ KK KKK++KKKKKKK K
Sbjct: 102 QAKKLKKKREKKKKKKKGAKNLA 124
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 31.6 bits (72), Expect = 0.77
Identities = 12/48 (25%), Positives = 33/48 (68%)
Query: 5 KGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
+ Q R EE ++KK ++K++ ++K++++ ++E E+++EE + ++
Sbjct: 17 RRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKER 64
Score = 30.8 bits (70), Expect = 1.2
Identities = 13/39 (33%), Positives = 32/39 (82%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
E RK++++ +++++KKK+++++K+ EE+ +E +EY+K
Sbjct: 39 EGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEK 77
Score = 29.7 bits (67), Expect = 3.0
Identities = 12/46 (26%), Positives = 28/46 (60%)
Query: 21 KKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLD 66
KK KK+ K ++K+ ++++ E EEE E +K ++ + + ++ +
Sbjct: 1 KKIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEE 46
Score = 29.7 bits (67), Expect = 3.6
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKE-EEEEEEEPDEYQKVVDAEWKILYEK 64
KK KK+ K ++K+ +++++E EEEE EE + ++ + E K E
Sbjct: 1 KKIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEEL 48
Score = 29.7 bits (67), Expect = 3.8
Identities = 13/56 (23%), Positives = 33/56 (58%)
Query: 5 KGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKI 60
K R E +++++KK ++K++ ++K++++ EEE E++ +E ++ E
Sbjct: 14 KQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQAR 69
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is
functionally equivalent to L7/L12 in bacteria and the
P1 and P2 proteins in eukaryotes. L12p is homologous to
P1 and P2 but is not homologous to bacterial L7/L12. It
is located in the L12 stalk, with proteins L10, L11,
and 23S rRNA. L12p is the only protein in the ribosome
to occur as multimers, always appearing as sets of
dimers. Recent data indicate that most archaeal species
contain six copies of L12p (three homodimers), while
eukaryotes have four copies (two heterodimers), and
bacteria may have four or six copies (two or three
homodimers), depending on the species. The organization
of proteins within the stalk has been characterized
primarily in bacteria, where L7/L12 forms either two or
three homodimers and each homodimer binds to the
extended C-terminal helix of L10. L7/L12 is attached to
the ribosome through L10 and is the only ribosomal
protein that does not directly interact with rRNA.
Archaeal L12p is believed to function in a similar
fashion. However, hybrid ribosomes containing the large
subunit from E. coli with an archaeal stalk are able to
bind archaeal and eukaryotic elongation factors but not
bacterial elongation factors. In several mesophilic and
thermophilic archaeal species, the binding of 23S rRNA
to protein L11 and to the L10/L12p pentameric complex
was found to be temperature-dependent and cooperative.
Length = 106
Score = 30.5 bits (69), Expect = 0.77
Identities = 12/26 (46%), Positives = 21/26 (80%)
Query: 23 KKKKKKKKKKKKKKKKEEEEEEEEPD 48
++K ++K+++KKK+EE+EEEEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEEA 98
Score = 29.0 bits (65), Expect = 2.8
Identities = 12/25 (48%), Positives = 22/25 (88%)
Query: 22 KKKKKKKKKKKKKKKKKEEEEEEEE 46
++K ++K+++KKK++E+EEEEEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 28.6 bits (64), Expect = 3.0
Identities = 11/25 (44%), Positives = 21/25 (84%)
Query: 25 KKKKKKKKKKKKKKEEEEEEEEPDE 49
++K ++K+++KK+EEE+EEE +E
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 28.6 bits (64), Expect = 3.2
Identities = 12/25 (48%), Positives = 22/25 (88%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEEEE 44
++K ++K+++KKK+++KEEEEEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 28.2 bits (63), Expect = 4.7
Identities = 11/25 (44%), Positives = 22/25 (88%)
Query: 21 KKKKKKKKKKKKKKKKKKEEEEEEE 45
++K ++K+++KKK++++EEEEEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 27.8 bits (62), Expect = 6.7
Identities = 11/25 (44%), Positives = 22/25 (88%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEE 43
++K ++K+++KKK+++K+EEEEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 27.5 bits (61), Expect = 9.9
Identities = 10/25 (40%), Positives = 22/25 (88%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEE 42
++K ++K+++KKK+++K++EEEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 32.5 bits (75), Expect = 0.78
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 7 QFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
+F A EE K K+ + KK + +KKK+ + + +E P + K +D E
Sbjct: 174 KFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKE 224
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is
a small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis.
In most cases, it resides in potential 5' UTRs of
homologues of the yjdF gene whose function is unknown.
However, in Streptococcus thermophilus, a yjdF RNA motif
is associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound
that structurally resembles the ligand bound by other
yjdF RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 30.7 bits (70), Expect = 0.80
Identities = 10/25 (40%), Positives = 20/25 (80%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKK 38
E + K++KKK+ K+KK+++K++K
Sbjct: 93 LEHERNKQEKKKRSKEKKEEEKERK 117
Score = 30.7 bits (70), Expect = 0.87
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEEEE 44
K + ++ K++KKK+ K+KKEEE+E
Sbjct: 92 KLEHERNKQEKKKRSKEKKEEEKER 116
Score = 29.5 bits (67), Expect = 2.6
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 9/33 (27%)
Query: 15 ELRKKKKKKKKKKKK---------KKKKKKKKK 38
E K++KKK+ K+KK K++KKK K
Sbjct: 96 ERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAK 128
Score = 28.8 bits (65), Expect = 3.6
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEE 43
K + ++ K++KKK+ K+KK+EE+E
Sbjct: 92 KLEHERNKQEKKKRSKEKKEEEKER 116
Score = 28.8 bits (65), Expect = 4.8
Identities = 10/25 (40%), Positives = 20/25 (80%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEE 42
K + ++ K++KKK+ K+KK++E+E
Sbjct: 92 KLEHERNKQEKKKRSKEKKEEEKER 116
Score = 28.0 bits (63), Expect = 7.4
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 21 KKKKKKKKKKKKKKKKKKEEEEEEE 45
K + ++ K++KKK+ K+K+EEE+E
Sbjct: 92 KLEHERNKQEKKKRSKEKKEEEKER 116
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function
(DUF1764). This is a family of eukaryotic proteins of
unknown function. This family contains many
hypothetical proteins.
Length = 98
Score = 30.1 bits (68), Expect = 0.87
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
RKKKKK+ K + K KK +K++++++E P+
Sbjct: 24 RKKKKKRTAKTARPKATKKGQKKDKKKDEFPE 55
Score = 29.7 bits (67), Expect = 1.3
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKV 53
+KKKKK+ K + K KK ++++++++E E+ +
Sbjct: 24 RKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEE 59
Score = 29.7 bits (67), Expect = 1.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVD 55
++ ++ K + K KK +KK KKK+E E E + ++ D
Sbjct: 26 KKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRRTED 67
Score = 29.0 bits (65), Expect = 2.5
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVD 55
++K+KKKKK+ K + K KK ++++++++
Sbjct: 20 NIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEES 60
Score = 28.6 bits (64), Expect = 3.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
++ +K+ K + K KK +KK KK++E E
Sbjct: 25 KKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPE 58
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 32.5 bits (75), Expect = 0.88
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKE 39
L K KK K +K K+
Sbjct: 824 LADAPAKDPAGKKAAVKFSRKTKQ 847
Score = 29.8 bits (68), Expect = 6.0
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 9 RAHFCEELRKKKKKKKKKKKKKKKKKKKKK 38
+ + + K KK K +K K++
Sbjct: 820 KLRYLADAPAKDPAGKKAAVKFSRKTKQQY 849
Score = 29.4 bits (67), Expect = 8.1
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEE 40
+ KK K +K K++ E
Sbjct: 830 KDPAGKKAAVKFSRKTKQQYVASE 853
Score = 29.0 bits (66), Expect = 8.9
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEE 41
K KK K +K K++ E
Sbjct: 830 KDPAGKKAAVKFSRKTKQQYVASE 853
Score = 29.0 bits (66), Expect = 9.3
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEE 40
K KK K +K ++
Sbjct: 824 LADAPAKDPAGKKAAVKFSRKTKQ 847
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 31.1 bits (71), Expect = 0.88
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
L K +KK +K KK+K++++EEE E EE DE ++
Sbjct: 83 LLKWRKKVRKLLGLDKKEKEEEEEEEVEVEELDEEEQ 119
Score = 30.7 bits (70), Expect = 1.2
Identities = 8/27 (29%), Positives = 20/27 (74%)
Query: 13 CEELRKKKKKKKKKKKKKKKKKKKKKE 39
+EL +K+ K K++K+++ ++K+K+
Sbjct: 120 IDELLEKELAKLKREKRRENERKQKEI 146
Score = 30.3 bits (69), Expect = 1.6
Identities = 12/41 (29%), Positives = 28/41 (68%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
RKK +K KK+K+++++++ E EE +E ++ ++++ E
Sbjct: 87 RKKVRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKE 127
Score = 29.2 bits (66), Expect = 3.4
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKK 37
E+ K K++K+++ ++K+K+ K
Sbjct: 125 EKELAKLKREKRRENERKQKEILK 148
Score = 28.8 bits (65), Expect = 5.3
Identities = 10/39 (25%), Positives = 27/39 (69%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
+++RK KK+K+++++++ + +E +EEE+ + +K
Sbjct: 88 KKVRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEK 126
Score = 28.4 bits (64), Expect = 6.8
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEE 40
E K K++K+++ ++K+K+ KE+
Sbjct: 125 EKELAKLKREKRRENERKQKEILKEQ 150
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 32.4 bits (74), Expect = 0.92
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 4 YKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEE--EEEPDEYQKVVDAEWKIL 61
+F ++L + +KK +K+ KK + K +K+E+E E E+ +E ++ + +L
Sbjct: 271 LDEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGE----LL 326
Query: 62 YEKLDKIH 69
Y L I
Sbjct: 327 YANLQLIE 334
Score = 30.1 bits (68), Expect = 4.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKE 39
EEL ++ K KKKK+KKK+ +K
Sbjct: 417 EELIEEGLLKSKKKKRKKKEWFEKFR 442
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 32.0 bits (73), Expect = 0.93
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
K + KKK +KKKKKKK+KKE + E E ++
Sbjct: 61 DKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKT 95
Score = 32.0 bits (73), Expect = 0.93
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
KKK +KKKKKKK+KK+ K + E + + P
Sbjct: 67 KKKSEKKKKKKKEKKEPKSEGETKLGFKTP 96
Score = 30.8 bits (70), Expect = 2.2
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
KK+ K + KKK +KKKKKKKE++E + E
Sbjct: 58 KKEDKNNESKKKSEKKKKKKKEKKEPKSE 86
Score = 30.5 bits (69), Expect = 2.6
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
E+ + KKK +KKKKKKK+KK+ K E E +
Sbjct: 60 EDKNNESKKKSEKKKKKKKEKKEPKSEGETKLG 92
Score = 30.5 bits (69), Expect = 2.7
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
KK KK+ K + KKK +KKK++++E++EP
Sbjct: 54 TKKDKKEDKNNESKKKSEKKKKKKKEKKEP 83
Score = 30.5 bits (69), Expect = 3.1
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
KK+ K + KKK +KKKKKK+E++E + E
Sbjct: 57 DKKEDKNNESKKKSEKKKKKKKEKKEPKSEGE 88
Score = 30.1 bits (68), Expect = 3.5
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQ 51
KK KK+ K + KKK +KKKK+++E++E E +
Sbjct: 55 KKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGE 88
Score = 30.1 bits (68), Expect = 4.0
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEE 43
E +KK +KKKKKKK+KK+ K + + +
Sbjct: 64 NESKKKSEKKKKKKKEKKEPKSEGETKLGF 93
Score = 29.3 bits (66), Expect = 7.0
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
++ K + KKK +KKKKKKK+K+E + E E
Sbjct: 59 KEDKNNESKKKSEKKKKKKKEKKEPKSEGE 88
Score = 28.9 bits (65), Expect = 9.9
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
KK KK+ K + KKK +KK+++++E++ + +
Sbjct: 53 STKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEG 87
>gnl|CDD|197357 cd10049, Reelin_repeat_5_subrepeat_2, C-terminal subrepeat of
tandem repeat unit 5 of reelin and related proteins.
Reelin is an extracellular glycoprotein involved in
neuronal development, specifically in the brain cortex.
It contains 8 tandemly repeated units, each of which is
composed of two highly similar subrepeats and a central
EGF domain. This model characterizes the C-terminal
subrepeat, which directly contacts the N-terminal
subrepeat and the EGF domain in a compact arrangement.
Consecutive reelin repeat units are packed together to
form an overall rod-like molecular structure. Reelin
repeats 5 and 6 are reported to interact with neuronal
receptors, the apolipoprotein E receptor 2 (ApoER2) and
the very-low-density lipoprotein receptor (VLDLR),
triggering a signaling cascade upon binding and
subsequent tyrosine phosphorylation of the cytoplasmic
disabled-1 (Dab1).
Length = 150
Score = 31.0 bits (70), Expect = 0.93
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 137 ERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSL 176
E Q+ S+RF + SG K +R C I+ G F E+ R L
Sbjct: 10 EGQLESDRFLLMSGGKPSRKCGILSSGNNLFFNEDGLRML 49
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain. This region
covers both the Brf homology II and III regions. This
region is involved in binding TATA binding protein.
Length = 95
Score = 29.9 bits (68), Expect = 0.93
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
E +K + KKKKK+K KKK++E E
Sbjct: 36 ELKQKADEGNNSGKKKKKRKAKKKRDEAGPASTAAE 71
Score = 29.5 bits (67), Expect = 1.3
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
+E ++ K+K + KKKKK+K +++ +E P
Sbjct: 32 QEEKELKQKADEGNNSGKKKKKRKAKKKRDEAGPAS 67
Score = 28.4 bits (64), Expect = 3.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
E+ K+ K+K + KKKKK+K +++ +E
Sbjct: 31 EQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAGP 65
Score = 27.6 bits (62), Expect = 5.7
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEK 64
EE +K+ K+K + KKKKK++ +++ +E +A K+L +K
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAGPASTAAEAVKKMLQKK 80
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7
is an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 30.7 bits (70), Expect = 0.96
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 6/36 (16%)
Query: 14 EELRKKKKKKKKKKKKKKK------KKKKKKEEEEE 43
E R+K K+KKKKKKK+ + ++KKKEE E
Sbjct: 72 AEERRKLKEKKKKKKKELENFYRFQIREKKKEELAE 107
Score = 28.0 bits (63), Expect = 8.5
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKE 39
R K ++++K K+KKKKKKK+ E
Sbjct: 68 RNKAAEERRKLKEKKKKKKKELE 90
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 30.7 bits (70), Expect = 0.96
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
+ + K +KK+++KK + +K K EE+ E E ++ +K
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEK 56
Score = 30.3 bits (69), Expect = 1.2
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
E+ +++KK + +K K ++K + E E+ E+E +E +
Sbjct: 25 EKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEA 63
Score = 29.5 bits (67), Expect = 2.0
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
+ KK+++KK + +K K ++K E E E+ E ++
Sbjct: 22 AKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEE 60
Score = 28.0 bits (63), Expect = 6.8
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 5 KGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEE--EEEPDEYQK 52
+ + +E+ K K+K K +KK+++KK + E+ + EE EY+
Sbjct: 2 PEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYEL 51
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 32.3 bits (74), Expect = 1.0
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 11 HFCEELRKKKKKK-KKKKKKKKKKKKKKKEEEEEEEE 46
F EE + K+ KK K KK + KK+K KEE +E EE
Sbjct: 213 LFREEAKAKRIKKIKSKKYHRVHKKEKLKEELKEFEE 249
Score = 31.2 bits (71), Expect = 2.3
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
EE K +K K K+ +K +K+++EEE +EE P
Sbjct: 462 EEEAKVEKVANKLLKRSEKAQKEEEEEELDEENP 495
Score = 30.8 bits (70), Expect = 2.8
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
+E K +K K K+ +K +K++EEEE +EE
Sbjct: 461 DEEEAKVEKVANKLLKRSEKAQKEEEEEELDEE 493
Score = 29.6 bits (67), Expect = 5.5
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 9 RAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVD 55
R F E +K+ + KK KK+ K + K+KKE +EEEE DE + V+
Sbjct: 422 RRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVE 468
Score = 29.6 bits (67), Expect = 5.7
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
E K+ + KK KK+ K + K+KK+ +EEEE E +E KV
Sbjct: 428 ENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVA 471
Score = 29.3 bits (66), Expect = 8.3
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 22 KKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
KK+KKK+K+K++ K E ++E+ D+ K V I+ EK +K
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEKRKDKKLKNV-----IINEKRNK 667
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 31.2 bits (71), Expect = 1.1
Identities = 6/42 (14%), Positives = 26/42 (61%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWK 59
+ ++ +++ +++ ++ + ++E EE+ E + +++ + WK
Sbjct: 87 EDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPSWK 128
>gnl|CDD|151885 pfam11446, DUF2897, Protein of unknown function (DUF2897). This
is a bacterial family of uncharacterized proteins.
Length = 55
Score = 28.8 bits (65), Expect = 1.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
L+ K K + K+KKKK K+ E++ + D
Sbjct: 23 LKYSAKMKFPQFDKQKKKKAKRNAEQDAKNSAD 55
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 32.1 bits (74), Expect = 1.2
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 5 KGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
+AH E RK+ K +KK+KKKKK+K+K+EE + +E
Sbjct: 601 YASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDE 642
Score = 30.6 bits (70), Expect = 2.8
Identities = 14/48 (29%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 9 RAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDA 56
+A E L K+ +K K++ ++KK+K ++++++ EE E E Q+ +
Sbjct: 535 KAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAE-KEAQQAIKE 581
Score = 30.6 bits (70), Expect = 3.5
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 11/48 (22%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEE-----------EEEEEEPDEY 50
+L K +K KKKKKKK K K K + EE E D+Y
Sbjct: 677 SDLEKIQKPKKKKKKKPKTVKPKPRTVSLELDLRGMRYEEALERLDKY 724
>gnl|CDD|221466 pfam12220, U1snRNP70_N, U1 small nuclear ribonucleoprotein of
70kDa MW N terminal. This domain is found in
eukaryotes. This domain is about 90 amino acids in
length. This domain is found associated with pfam00076.
This domain is part of U1 snRNP, which is the pre-mRNA
binding protein of the penta-snRNP spliceosome complex.
It extends over a distance of 180 A from its RNA
binding domain, wraps around the core domain of U1
snRNP consisting of the seven Sm proteins and finally
contacts U1-C, which is crucial for 5'-splice-site
recognition.
Length = 94
Score = 29.5 bits (67), Expect = 1.3
Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 7 QFRAHFCEELRKKKKKK---KKKKKKKKKKKKKKKEEEEEEEEPDEY 50
Q+ + F + + + +K++++K++KK+K E++ EEE E+
Sbjct: 42 QYLSEFKDYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEELKEW 88
>gnl|CDD|239571 cd03489, Topoisomer_IB_N_LdtopoI_like,
Topoisomer_IB_N_LdtopoI_like: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the heterodimeric topo I from
Leishmania donvanni. Topo I enzymes are divided into:
topo type IA (bacterial) and type IB (eukaryotic). Topo
I relaxes superhelical tension in duplex DNA by creating
a single-strand nick, the broken strand can then rotate
around the unbroken strand to remove DNA supercoils and,
the nick is religated, liberating topo I. These enzymes
regulate the topological changes that accompany DNA
replication, transcription and other nuclear processes.
Human topo I is the target of a diverse set of
anticancer drugs including camptothecins (CPTs). CPTs
bind to the topo I-DNA complex and inhibit re-ligation
of the single-strand nick, resulting in the accumulation
of topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topo I play putative roles in
organizing the kinetoplast DNA network unique to these
parasites. This family may represent more than one
structural domain.
Length = 212
Score = 31.0 bits (70), Expect = 1.3
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 21 KKKKKKKKKKKKKKKKKKEEEEEEEEP 47
++K+KKK + K++KK KEE+++E EP
Sbjct: 93 REKEKKKSRTKEEKKALKEEKDKEAEP 119
Score = 30.2 bits (68), Expect = 2.3
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEE 42
LR+K+KKK + K++KK K++K +E E
Sbjct: 92 LREKEKKKSRTKEEKKALKEEKDKEAE 118
>gnl|CDD|176075 cd08693, C2_PI3K_class_I_beta_delta, C2 domain present in class I
beta and delta phosphatidylinositol 3-kinases (PI3Ks).
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases)
regulate cell processes such as cell growth,
differentiation, proliferation, and motility. PI3Ks
work on phosphorylation of phosphatidylinositol,
phosphatidylinositide (4)P (PtdIns (4)P),2 or
PtdIns(4,5)P2. Specifically they phosphorylate the D3
hydroxyl group of phosphoinositol lipids on the inositol
ring. There are 3 classes of PI3Ks based on structure,
regulation, and specificity. All classes contain a C2
domain, a PIK domain, and a kinase catalytic domain.
The members here are class I, beta and delta isoforms of
PI3Ks and contain both a Ras-binding domain and a
p85-binding domain. Class II PI3Ks contain both of
these as well as a PX domain, and a C-terminal C2 domain
containing a nuclear localization signal. C2 domains
fold into an 8-standed beta-sandwich that can adopt 2
structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind phospholipids,
inositol polyphosphates, and intracellular proteins.
Most C2 domain proteins are either signal transduction
enzymes that contain a single C2 domain, such as protein
kinase C, or membrane trafficking proteins which contain
at least two C2 domains, such as synaptotagmin 1.
However, there are a few exceptions to this including
RIM isoforms and some splice variants of piccolo/aczonin
and intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. Members have a type-I
topology.
Length = 173
Score = 30.7 bits (70), Expect = 1.3
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKK 36
E+ KK K K+ +K + KKKKKK
Sbjct: 84 EVSKKAKGKRSRKNQTKKKKKK 105
Score = 29.6 bits (67), Expect = 2.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 13 CEELRKKKKKKKKKKKKKKKKKK 35
E +K K K+ +K + KKKKKK
Sbjct: 83 YEVSKKAKGKRSRKNQTKKKKKK 105
Score = 28.8 bits (65), Expect = 5.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 18 KKKKKKKKKKKKKKKKKKKKK 38
KK K K+ +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
>gnl|CDD|216985 pfam02349, MSG, Major surface glycoprotein. This is a novel
repeat in Pneumocystis carinii Major surface
glycoprotein (MSG) some members of the alignment have
up to nine repeats of this family, the repeats
containing several conserved cysteines. The MSG of P.
carinii is an important protein in host-pathogen
interactions. Surface glycoprotein A from Pneumocystis
carinii is a main target for the host immune system,
this protein is implicated in the attachment of
Pneumocystis carinii to the host alveolar epithelial
cells, alveolar macrophages, host surfactant and
possibly accounts in part for the hypoxia seen in
Pneumocystis carinii pneumonia (PCP).
Length = 81
Score = 29.3 bits (66), Expect = 1.4
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 8 FRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEE 43
+EL+ + KKKKK KK K+K K K+E E
Sbjct: 46 LEELLLKELKGELKKKKKCKKALKEKCTKLKKESNE 81
Score = 27.8 bits (62), Expect = 4.1
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 13 CEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWK 59
CE+L++K K KK K ++ K+ K E +++++ + K + K
Sbjct: 30 CEKLKEKCYKLKKDLKLEELLLKELKGELKKKKKCKKALKEKCTKLK 76
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 31.5 bits (72), Expect = 1.4
Identities = 15/77 (19%), Positives = 34/77 (44%)
Query: 4 YKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYE 63
K + L++K+++ K +++ + + KE E++ E+++ + K E
Sbjct: 182 LKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEE 241
Query: 64 KLDKIHASGAQVVLSKL 80
KL + A+ KL
Sbjct: 242 KLRQELERQAEAHEQKL 258
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 31.6 bits (71), Expect = 1.4
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 11/64 (17%)
Query: 14 EELRKKKKKKKK-----------KKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILY 62
E + ++ ++K K +KK +K++K K+ +E+ E+ +V D E
Sbjct: 109 ESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMDEDVEDQGSESEVSDVEESEFV 168
Query: 63 EKLD 66
L+
Sbjct: 169 TSLE 172
>gnl|CDD|218550 pfam05311, Baculo_PP31, Baculovirus 33KDa late protein (PP31).
Autographa californica nuclear polyhedrosis virus
(AcMNPV) pp31 is a nuclear phosphoprotein that
accumulates in the virogenic stroma, which is the viral
replication centre in the infected-cell nucleus, binds
to DNA, and serves as a late expression factor.
Length = 267
Score = 31.2 bits (71), Expect = 1.4
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVD 55
RK+K KK KK KK+K+K P + V D
Sbjct: 224 SRKRKAPKKVAKKVAAAKKRKQK-----RSPPPPFNMVSD 258
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 31.9 bits (72), Expect = 1.4
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 1 VQIYKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
+ E ++ K K++ KK + + K+K E EEE
Sbjct: 182 ETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENL 227
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 31.2 bits (71), Expect = 1.5
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
R KK++ + ++KKK+KK K + +
Sbjct: 366 PERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 31.2 bits (71), Expect = 1.5
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 411 EIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL 458
E+ SD +Y +L LS + ++ K+++ A+ +LDD+
Sbjct: 82 ELSSSDEDDYYRML-LGLGHELSRIKVREEVDKEDKLIIQAIEALDDI 128
Score = 30.8 bits (70), Expect = 2.4
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
++ KK++ + ++KKK+KK K E +
Sbjct: 365 KPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 30.1 bits (68), Expect = 3.5
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEE 45
+ K ++ KK++ + ++KKK+K+ + E
Sbjct: 363 KAKPERDKKERPGRYRRKKKEKKAKSERR 391
Score = 28.9 bits (65), Expect = 8.0
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
K K ++ KK++ + ++KKKE++ + E
Sbjct: 361 PTKAKPERDKKERPGRYRRKKKEKKAKSER 390
>gnl|CDD|234707 PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.
Length = 64
Score = 28.7 bits (65), Expect = 1.5
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 7 QFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEE 43
+ R E +K +K+K+KK +K+++KK EE
Sbjct: 31 ELRRR---EFYEKPSEKRKRKKAAARKRRRKKLAREE 64
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 31.0 bits (70), Expect = 1.5
Identities = 12/43 (27%), Positives = 15/43 (34%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWK 59
KK + K K K KK KKK + +WK
Sbjct: 150 PKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWK 192
Score = 28.7 bits (64), Expect = 8.6
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEE 42
KK KK + K K K KK K++
Sbjct: 147 VKKPKKGQSPKVPKAPKPKKPKKKGS 172
>gnl|CDD|240253 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Provisional.
Length = 202
Score = 30.8 bits (70), Expect = 1.6
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKV 53
EE RK++ KKK K +K K+ ++ + P V
Sbjct: 156 EEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAV 195
Score = 28.5 bits (64), Expect = 8.9
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDA 56
+L +K+K++ KKK K +K +E ++ + +V
Sbjct: 153 AKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAV 195
>gnl|CDD|220654 pfam10254, Pacs-1, PACS-1 cytosolic sorting protein. PACS-1 is a
cytosolic sorting protein that directs the localisation
of membrane proteins in the trans-Golgi network
(TGN)/endosomal system. PACS-1 connects the clathrin
adaptor AP-1 to acidic cluster sorting motifs contained
in the cytoplasmic domain of cargo proteins such as
furin, the cation-independent mannose-6-phosphate
receptor and in viral proteins such as human
immunodeficiency virus type 1 Nef.
Length = 413
Score = 31.3 bits (71), Expect = 1.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEE 45
K+K KK KK K+KE E + +
Sbjct: 331 TKEKNKKVPVMFLGKKPKEKEVESKSQ 357
Score = 30.6 bits (69), Expect = 2.9
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 21 KKKKKKKKKKKKKKKKKKEEEEEEEE 46
K+K KK KK KE+E E +
Sbjct: 331 TKEKNKKVPVMFLGKKPKEKEVESKS 356
Score = 29.0 bits (65), Expect = 7.9
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEE 44
K+K KK KK K+K+ E + +
Sbjct: 331 TKEKNKKVPVMFLGKKPKEKEVESKSQ 357
Score = 28.6 bits (64), Expect = 9.7
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEEEEEE 46
K+K KK KK K++E E + +
Sbjct: 331 TKEKNKKVPVMFLGKKPKEKEVESKSQ 357
>gnl|CDD|221583 pfam12449, DUF3684, Protein of unknown function (DUF3684). This
domain family is found in eukaryotes, and is typically
between 1072 and 1090 amino acids in length.
Length = 1084
Score = 31.5 bits (72), Expect = 1.6
Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 32/100 (32%)
Query: 15 ELRKKKKK-------KKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
EL ++ K+ + KKK + +++E+E+ + EW++
Sbjct: 960 ELFREMKRSPFLLASRDIPSSKKKASTSEDDDDDEDEDAGIK-------EWQL------- 1005
Query: 68 IHASGAQVVLSKLPIGDVAT-QYFADRDMFCAGRVPEEDL 106
A + +V+ + D + Q F D + A P+E+L
Sbjct: 1006 --AKASDIVI----VDDYNSYQLFKD-SILAA---PQEEL 1035
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this
family (Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 29.5 bits (67), Expect = 1.6
Identities = 9/28 (32%), Positives = 21/28 (75%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEE 42
+ RK+++K +++++ K+ K K++E EE
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEE 28
Score = 27.2 bits (61), Expect = 9.1
Identities = 9/26 (34%), Positives = 20/26 (76%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEE 43
+K+++K +++++ K+ K K+EE EE
Sbjct: 3 RKEEEKAQREEELKRLKNLKREEIEE 28
>gnl|CDD|221659 pfam12597, DUF3767, Protein of unknown function (DUF3767). This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 112 and 199 amino
acids in length.
Length = 119
Score = 29.6 bits (67), Expect = 1.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 12 FCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
C R+K + KK + +KK KK E+EE
Sbjct: 87 QCRYRRRKSFQGMKKAVEAMAEKKAKKLREKEE 119
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 31.2 bits (71), Expect = 1.6
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
+E K+ KKKKKKKKKKKKK E + +
Sbjct: 48 QEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLP 82
Score = 30.5 bits (69), Expect = 2.9
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
+ K+ KKKKKKKKKKKKK E + D A
Sbjct: 51 ENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSAA 89
Score = 30.5 bits (69), Expect = 3.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
++ + K+ KKKKKKKKKKKK+ E +
Sbjct: 44 ISENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLA 78
Score = 29.7 bits (67), Expect = 5.6
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
E++++K++ K+K KKK KK KK ++++
Sbjct: 9 EVKQQKQQNKQKGTKKKNKKSKKDVDDDDA 38
Score = 29.3 bits (66), Expect = 7.1
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 12 FCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
F EL + ++ + K+ KKKKKKKKK++++ E
Sbjct: 39 FLAELISENQEAENKQNNKKKKKKKKKKKKKNLGE 73
Score = 28.9 bits (65), Expect = 9.3
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEE 45
K++K++ K+K KKK KK KK+ ++++
Sbjct: 11 KQQKQQNKQKGTKKKNKKSKKDVDDDDA 38
>gnl|CDD|240334 PTZ00258, PTZ00258, GTP-binding protein; Provisional.
Length = 390
Score = 31.1 bits (71), Expect = 1.7
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 12 FCEELRKKKKKKKKKKKKKKKKKK-----KKKEEEEEEEEPDEYQKVVDAEWKIL 61
F E+ + KK+KKKKKKK++K KK E EE +P D E +IL
Sbjct: 158 FVEKRLDELTKKRKKKKKKKEEKVELDVLKKVLEWLEEGKPVRDGDWTDKEIEIL 212
>gnl|CDD|218140 pfam04547, Anoctamin, Calcium-activated chloride channel. The
family carries eight putative transmembrane domains,
and, although it has no similarity to other known
channel proteins, it is clearly a calcium-activated
ionic channel. It is expressed in various secretory
epithelia, the retina and sensory neurons, and mediates
receptor-activated chloride currents in diverse
physiological processes.
Length = 449
Score = 31.0 bits (71), Expect = 1.8
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
+ +KKK KKKK+K+KK ++ + E E E E Y
Sbjct: 271 KKIRKKKIKKKKEKEKKPEENEILERIENESELPPYDV 308
>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component
Toc86/159, G and M domains. The long precursor of the
86K protein originally described is proposed to have
three domains. The N-terminal A-domain is acidic,
repetitive, weakly conserved, readily removed by
proteolysis during chloroplast isolation, and not
required for protein translocation. The other domains
are designated G (GTPase) and M (membrane anchor); this
family includes most of the G domain and all of M
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 763
Score = 31.1 bits (70), Expect = 1.9
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 KGQFRAHFCE-ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
K Q +A+ E + R K +KK+ +++ K+ K KK +E E PD Y + VD E
Sbjct: 426 KEQRKAYLEEYDYRVKLLQKKQWREELKRMKMMKKFGKEIGELPDGYSEEVDEE 479
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 31.2 bits (70), Expect = 1.9
Identities = 13/43 (30%), Positives = 29/43 (67%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDA 56
EE +K K++ ++K +++++++K+KE+E E E E ++ A
Sbjct: 582 EEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKA 624
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one
of the members is annotated as an EF-hand family
protein.
Length = 349
Score = 30.9 bits (70), Expect = 2.0
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 12 FCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
F R+KKK++KK ++ K +++ K E++EEE
Sbjct: 9 FQMTKREKKKREKKSIRQSKLEEELNKLEKKEEEAE 44
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are approximately 90 amino acids in
length. There are two completely conserved L residues
that may be functionally important.
Length = 70
Score = 28.5 bits (64), Expect = 2.0
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
EE R+++++ +K++++K+++K K EE E E D
Sbjct: 33 EEKREEEEEARKREERKEREKNKSFEELLNESELD 67
Score = 27.7 bits (62), Expect = 4.1
Identities = 11/33 (33%), Positives = 25/33 (75%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
+L+ KKK+ K +++K++++++ +K EE +E E
Sbjct: 20 AKLKAKKKELKAEEEKREEEEEARKREERKERE 52
Score = 27.3 bits (61), Expect = 5.7
Identities = 10/39 (25%), Positives = 28/39 (71%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
EE +++++++ +K++++K+++K K EE E +++K
Sbjct: 32 EEEKREEEEEARKREERKEREKNKSFEELLNESELDWRK 70
Score = 26.9 bits (60), Expect = 6.8
Identities = 8/33 (24%), Positives = 28/33 (84%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
+EL+ +++K++++++ +K++++K++E+ + EE
Sbjct: 27 KELKAEEEKREEEEEARKREERKEREKNKSFEE 59
>gnl|CDD|145973 pfam03114, BAR, BAR domain. BAR domains are dimerisation, lipid
binding and curvature sensing modules found in many
different protein families. A BAR domain with an
additional N-terminal amphipathic helix (an N-BAR) can
drive membrane curvature. These N-BAR domains are found
in amphiphysin, endophilin, BRAP and Nadrin. BAR domains
are also frequently found alongside domains that
determine lipid specificity, like pfam00169 and
pfam00787 domains in beta centaurins and sorting nexins
respectively.
Length = 230
Score = 30.4 bits (69), Expect = 2.0
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 15 ELRKKKKKKKKK------KKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKI 68
+++K KK ++K K+ + KK K KKE + EEE + Q+ + + L E+L +
Sbjct: 132 DIQKHIKKLERKRLDYDAKRHRLKKAKSKKELSKAEEELRQAQQKFEESNEELKEELPNL 191
Query: 69 HASGAQVVLSKL 80
A + V++ L
Sbjct: 192 LALEVEFVVNCL 203
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 31.3 bits (72), Expect = 2.0
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 10/56 (17%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK-------VVDAEWKILYEKLDK 67
K++ + K+ ++K+K+ E+ E D++ K V++AE K+ EK DK
Sbjct: 517 AYIKEQMEGSAPKEPEEKEKKPEKPEITIDDFDKVELRVAEVLEAE-KV--EKSDK 569
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 31.2 bits (70), Expect = 2.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 28 KKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKL 65
K K K KK++ +EEEEE ++ + K LY+K+
Sbjct: 523 KDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKM 560
>gnl|CDD|218991 pfam06326, Vesiculo_matrix, Vesiculovirus matrix protein. This
family consists of several Vesiculovirus matrix
proteins. The matrix (M) protein of vesicular
stomatitis virus (VSV) expressed in the absence of
other viral components causes many of the cytopathic
effects of VSV, including an inhibition of host gene
expression and the induction of cell rounding. It has
been shown that M protein also induces apoptosis in the
absence of other viral components. It is thought that
the activation of apoptotic pathways causes the
inhibition of host gene expression and cell rounding by
M protein.
Length = 229
Score = 30.5 bits (69), Expect = 2.1
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKV 53
L K K K K+ KK K KK + + P Y++
Sbjct: 3 LFKLLKLKGKEVASKKSKGSKKLNMSMDWDAPPSYEET 40
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 30.9 bits (70), Expect = 2.1
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 4 YKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
Y G + + ++ + KKK K K K KKK K + ++ +
Sbjct: 739 YAGTPKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKK 782
>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p. Rrp15p is required for the formation
of 60S ribosomal subunits.
Length = 132
Score = 29.6 bits (67), Expect = 2.2
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEE 45
++L K KKK K +K +KK K++ + E+ + E
Sbjct: 28 KKLLKAKKKLKSEKLEKKAKRQLRAEKRQALE 59
Score = 28.1 bits (63), Expect = 6.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVD 55
KK K KKK K +K +KK K++ E+ + E +V
Sbjct: 25 SRSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVKP 65
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more
internally with limited reactivity in the C-terminal
domains, while P2 proteins seem to be more externally
located and are more likely to interact with other
cellular components. In lower eukaryotes, P1 and P2 are
further subdivided into P1A, P1B, P2A, and P2B, which
form P1A/P2B and P1B/P2A heterodimers. Some plant
species have a third P-protein, called P3, which is not
homologous to P1 and P2. In humans, P1 and P2 are
strongly autoimmunogenic. They play a significant role
in the etiology and pathogenesis of systemic lupus
erythema (SLE). In addition, the ribosome-inactivating
protein trichosanthin (TCS) interacts with human P0,
P1, and P2, with its primary binding site located in
the C-terminal region of P2. TCS inactivates the
ribosome by depurinating a specific adenine in the
sarcin-ricin loop of 28S rRNA.
Length = 103
Score = 29.2 bits (66), Expect = 2.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 28 KKKKKKKKKKKEEEEEEEEPD 48
+ KK++KKEEEEEE + D
Sbjct: 77 AAAEAKKEEKKEEEEEESDDD 97
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 30.9 bits (70), Expect = 2.3
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
++ KK + K + ++ + K KEE+ ++EE ++ QK
Sbjct: 379 QDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQK 417
Score = 29.4 bits (66), Expect = 6.0
Identities = 8/35 (22%), Positives = 24/35 (68%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
+ +++K K+++ +KK+K++ + KE+ +++E
Sbjct: 400 AKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A.
Length = 977
Score = 31.1 bits (70), Expect = 2.4
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKI 68
K + + K KK KKKK KK+E + + P E Q++ + YE L ++
Sbjct: 115 KNRVESWKDKKNKKKKSAKKKEAHKAQIPPE-QQMEEKPSADAYEPLSRV 163
Score = 30.7 bits (69), Expect = 2.7
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
E + KK KKKK KKK+ K + E++ EE+P
Sbjct: 119 ESWKDKKNKKKKSAKKKEAHKAQIPPEQQMEEKP 152
Score = 30.7 bits (69), Expect = 3.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
K + + K KK KKKK KKKE + + P++
Sbjct: 115 KNRVESWKDKKNKKKKSAKKKEAHKAQIPPEQ 146
Score = 29.6 bits (66), Expect = 6.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
K KK KKKK KKK+ K + E++ EE
Sbjct: 122 KDKKNKKKKSAKKKEAHKAQIPPEQQMEEKP 152
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 30.9 bits (69), Expect = 2.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKV 53
KKKKKKKKK K ++E + E +E V
Sbjct: 105 TPSKKKKKKKKKGWFWAKSKQESKTIETEEIIDV 138
Score = 29.4 bits (65), Expect = 6.6
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEE---EEEPDEYQKVVDAEWKILYE 63
KKKKKKKKK K K+E + EE D V A L++
Sbjct: 105 TPSKKKKKKKKKGWFWAKSKQESKTIETEEIIDVGASVNQANETRLFD 152
Score = 29.0 bits (64), Expect = 9.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
+ KKKKKKKKK K K+E + E E
Sbjct: 102 DDDTPSKKKKKKKKKGWFWAKSKQESKTIETE 133
>gnl|CDD|216298 pfam01101, HMG14_17, HMG14 and HMG17.
Length = 93
Score = 28.6 bits (64), Expect = 2.6
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
KKKK K KK K KK+ K+EE +EE P E
Sbjct: 43 AKKKKPAVKGKKGAKGKKETKQEEAKEENPAE 74
Score = 28.2 bits (63), Expect = 3.2
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKI 60
E + KK KKKK K KK K ++E ++EE E + E K
Sbjct: 35 EPKPKKAAAKKKKPAVKGKKGAKGKKETKQEEAKEENPAENGETKT 80
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional.
Length = 600
Score = 30.7 bits (69), Expect = 2.6
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 354 VVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHP 396
+ D V TLGP+G + ++ + G I NDG T+ K +++ P
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDP 120
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 30.4 bits (69), Expect = 2.6
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 171 ETERSLHDAIMIVR-RTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSD 224
T R + D+ I+ + VV GGG I +EL+ AL LG +V D
Sbjct: 124 ATLRGVIDSDEILELLELPKRVVVVGGGYIGLELAAALAK---LGKEVTVVERRD 175
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 30.6 bits (69), Expect = 2.6
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEK 64
E K K + KKK + KKK + E + + E K +A+ K K
Sbjct: 153 EEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAK 202
>gnl|CDD|227238 COG4901, COG4901, Ribosomal protein S25 [Translation, ribosomal
structure and biogenesis].
Length = 107
Score = 29.1 bits (65), Expect = 2.7
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDA 56
KK +K K K KKK KKK++EE ++++D
Sbjct: 7 LSKEKKAEKAKAGTAKDKKKWSKKKKKEEARRAVTVDEELLDK 49
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 30.6 bits (70), Expect = 2.7
Identities = 13/72 (18%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEP--DEYQKVVDAEWKILYEKLDKIHAS 71
EEL+ ++ + K+ + K+ + EE E + ++ +++ A ++ +LD + +
Sbjct: 46 EELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELE-AELDTLLLT 104
Query: 72 GAQVVLSKLPIG 83
+ +P+G
Sbjct: 105 IPNIPHESVPVG 116
>gnl|CDD|180337 PRK05985, PRK05985, cytosine deaminase; Provisional.
Length = 391
Score = 30.7 bits (70), Expect = 2.8
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 10/63 (15%)
Query: 96 FCAGRVPEEDLKRTMKAC---GGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK 152
FC G +PE ++ R + G A+MT A G+ V + + VF G
Sbjct: 244 FCLGDLPEREVDRLAERLAEAGVAIMTNA-------PGSVPVPPVAALRAAGVTVFGGND 296
Query: 153 NAR 155
R
Sbjct: 297 GIR 299
>gnl|CDD|205219 pfam13038, DUF3899, Domain of unknown function (DUF3899).
Putative Tryptophanyl-tRNA synthetase.
Length = 92
Score = 28.4 bits (64), Expect = 2.8
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 25 KKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
++ ++ +KK+K EE+E D+ K
Sbjct: 35 RRLFRQLVEKKEKDSIEEDEFANDKKVK 62
Score = 28.1 bits (63), Expect = 3.9
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 24 KKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
++ ++ +KK+K EE+E + +K
Sbjct: 35 RRLFRQLVEKKEKDSIEEDEFANDKKVKK 63
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 30.1 bits (68), Expect = 2.8
Identities = 11/31 (35%), Positives = 24/31 (77%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEE 45
EL K KK++ ++K++++++K ++E+ EEE
Sbjct: 150 ELEKIKKERAEEKEREEEEKAAEEEKAREEE 180
Score = 28.9 bits (65), Expect = 6.9
Identities = 11/31 (35%), Positives = 24/31 (77%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
LR+ +K KK++ ++K++++++K EEE+ E
Sbjct: 148 LRELEKIKKERAEEKEREEEEKAAEEEKARE 178
Score = 28.9 bits (65), Expect = 8.0
Identities = 10/36 (27%), Positives = 25/36 (69%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
L ++ +K KK++ ++K++++++K EEE+ +E
Sbjct: 145 AALLRELEKIKKERAEEKEREEEEKAAEEEKAREEE 180
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 30.9 bits (70), Expect = 2.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEE 40
R +KK K K KK +K KK +
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAK 793
Score = 30.1 bits (68), Expect = 4.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 9 RAHFCEELRKKKKKKKKKKKKKKKKKKKKK 38
+ +F + + +KK K K KK +K KK
Sbjct: 760 KVNFEPDSAFRGEKKAKPKAAKKDARKAKK 789
>gnl|CDD|237276 PRK13024, PRK13024, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 755
Score = 30.6 bits (70), Expect = 2.9
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKE 39
+L K++ KKKKK+KK KK + +K E
Sbjct: 731 DLEKRRLKKKKKRKKVKKWEVEKIE 755
Score = 29.8 bits (68), Expect = 4.9
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEE 40
+K++ KKKKK+KK KK + +K E
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKIE 755
>gnl|CDD|220231 pfam09420, Nop16, Ribosome biogenesis protein Nop16. Nop16 is a
protein involved in ribosome biogenesis.
Length = 173
Score = 29.7 bits (67), Expect = 2.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKK 37
+RKKKK + K +K+ K+K
Sbjct: 1 VRKKKKNRSSNYKVNRKRLKRK 22
Score = 28.6 bits (64), Expect = 7.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 18 KKKKKKKKKKKKKKKKKKKKK 38
+KKKK + K +K+ K+K
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRK 22
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The
family functions as a highly conserved exonuclease that
is required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing
and export.
Length = 134
Score = 29.2 bits (66), Expect = 3.0
Identities = 12/41 (29%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEE--EEEPDEYQKVVD 55
RK++++KK +++ K+K+++++ EE + EE E +K +
Sbjct: 30 RKQQRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLK 70
>gnl|CDD|150531 pfam09871, DUF2098, Uncharacterized protein conserved in archaea
(DUF2098). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 91
Score = 28.4 bits (64), Expect = 3.0
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 8 FRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEY 50
+R + E K K+KK+++++ K++ ++ K+EEE E+ D
Sbjct: 41 YRTDYLEVTDKVKEKKEEREEDKEELIERIKKEEETFEDVDLG 83
>gnl|CDD|220129 pfam09159, Ydc2-catalyt, Mitochondrial resolvase Ydc2 / RNA
splicing MRS1. Members of this family adopt a secondary
structure consisting of two beta sheets and one alpha
helix, arranged as a beta-alpha-beta motif. Each beta
sheet has five strands, arranged in a 32145 order, with
the second strand being antiparallel to the rest.
Mitochondrial resolvase Ydc2 is capable of resolving
Holliday junctions and cleaves DNA after 5'-CT-3' and
5'-TT-3' sequences. This family also contains the
mitochondrial RNA-splicing protein MRS1 which is
involved in the excision of group I introns.
Length = 254
Score = 30.0 bits (68), Expect = 3.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKE 39
E+ +KKK + KKK K KK + +
Sbjct: 149 TEILAEKKKPRSKKKSSKNSKKLRID 174
Score = 29.6 bits (67), Expect = 4.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKK 37
++CE +KKK + KKK K KK
Sbjct: 144 YWCERTEILAEKKKPRSKKKSSKNSKK 170
>gnl|CDD|148491 pfam06898, YqfD, Putative stage IV sporulation protein YqfD. This
family consists of several putative bacterial stage IV
sporulation (SpoIV) proteins. YqfD of Bacillus subtilis
is known to be essential for efficient sporulation
although its exact function is unknown.
Length = 383
Score = 30.4 bits (69), Expect = 3.2
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLD 66
E + + K K K++ +K KK +++ E+E D+ K+ D K+L+E+++
Sbjct: 316 ETYYEVQDKVVKLTKEEAVEKGKKLAKKKLEKEIDKDAKIKDE--KVLHERVE 366
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II). Bone
sialoprotein (BSP) is a major structural protein of the
bone matrix that is specifically expressed by
fully-differentiated osteoblasts. The expression of bone
sialoprotein (BSP) is normally restricted to mineralised
connective tissues of bones and teeth where it has been
associated with mineral crystal formation. However, it
has been found that ectopic expression of BSP occurs in
various lesions, including oral and extraoral
carcinomas, in which it has been associated with the
formation of microcrystalline deposits and the
metastasis of cancer cells to bone.
Length = 291
Score = 30.0 bits (67), Expect = 3.2
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 21 KKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
KK KK K+ + ++EEEEEEE +E +V + E
Sbjct: 120 KKAGNAGKKATKEDESDEDEEEEEEEEEEEAEVEENE 156
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 30.2 bits (68), Expect = 3.4
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 4 YKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKK 37
+F+ H E+ + ++K+K+KK ++ +
Sbjct: 279 LTDEFKEHHAEQRAQYREKQKEKKAFLWTLRRNR 312
>gnl|CDD|220207 pfam09368, Sas10_Utp3_C, Sas10 C-terminal domain. This family
contains a C-terminal presumed domain in Sas10 which
hash been identified as a regulator of chromatin
silencing.
Length = 76
Score = 28.0 bits (63), Expect = 3.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEE 42
R KK+KK +K K+ K +++ EE+
Sbjct: 31 RVKKRKKYEKAVKRLKSQRRVVREED 56
>gnl|CDD|193409 pfam12936, Kri1_C, KRI1-like family C-terminal. The yeast member
of this family (Kri1p) is found to be required for 40S
ribosome biogenesis in the nucleolus. This is the
C-terminal domain of the family.
Length = 93
Score = 28.3 bits (64), Expect = 3.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKK 36
+E R+K KKK KK + ++ KKK
Sbjct: 69 KEERRKDKKKYGKKARLREWKKK 91
>gnl|CDD|151665 pfam11223, DUF3020, Protein of unknown function (DUF3020). This
family of fungal proteins is conserved towards the
C-terminus of HMG domains. The function is not known.
Length = 49
Score = 27.2 bits (60), Expect = 3.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEE 43
+LR + KKK KKK K+ K+K ++E
Sbjct: 20 DLRSRVKKKAKKKFGKEDSKEKDAYIDDE 48
>gnl|CDD|187774 cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR
(Clustered Regularly Interspaced Short Palindromic
Repeats) and associated Cas proteins comprise a system
for heritable host defense by prokaryotic cells against
phage and other foreign DNA; Very large protein
containing McrA/HNH-nuclease related domain and a
RuvC-like nuclease domain; signature gene for type II.
Length = 799
Score = 30.5 bits (69), Expect = 3.7
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 1 VQIYKGQFRAHFCEELRKKK----KKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDA 56
++I + Q + K++ KK K K+K+K +EEE + +
Sbjct: 298 LRIIEEQGETKILSKEEKQELLDLLFKKNKLTYKQKRKLLGLKEEEIFKGLRYEGLKAEK 357
Query: 57 EWKI---LYEKLDKI 68
+ I Y L K
Sbjct: 358 NFNISLKTYHDLRKA 372
>gnl|CDD|185582 PTZ00373, PTZ00373, 60S Acidic ribosomal protein P2; Provisional.
Length = 112
Score = 28.7 bits (64), Expect = 3.8
Identities = 12/18 (66%), Positives = 16/18 (88%)
Query: 29 KKKKKKKKKKEEEEEEEE 46
K + KK++KKEEEEEEE+
Sbjct: 87 KAEAKKEEKKEEEEEEED 104
Score = 28.7 bits (64), Expect = 3.9
Identities = 11/19 (57%), Positives = 17/19 (89%)
Query: 28 KKKKKKKKKKKEEEEEEEE 46
K + KK++KK+EEEEEE++
Sbjct: 87 KAEAKKEEKKEEEEEEEDD 105
Score = 28.0 bits (62), Expect = 6.1
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 30 KKKKKKKKKEEEEEEEEPD 48
K + KK++K+EEEEEEE D
Sbjct: 87 KAEAKKEEKKEEEEEEEDD 105
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 30.4 bits (69), Expect = 3.8
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
EEL+K+ KK ++K ++ + + +KK+EE E+ + K +D WK L +K D
Sbjct: 98 EELKKELKKLEEKIEQLEAEIEKKEEELEKAKN-----KFLDKAWKKLAKKYDS 146
>gnl|CDD|215299 PLN02543, PLN02543, pfkB-type carbohydrate kinase family protein.
Length = 496
Score = 30.3 bits (68), Expect = 3.8
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 17 RKKKKKK------KKKKKKKKKKKKKKKEEEEEEEEPD 48
R+ +KKK K K +++ KK ++ + E EE
Sbjct: 68 RRGRKKKPTSSPPKAKTTRRRTKKTDQELDPEGAEEDQ 105
>gnl|CDD|184416 PRK13955, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 130
Score = 29.0 bits (65), Expect = 3.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 31 KKKKKKKKEEEEEEEEPDE 49
K KK++E+EEE EP +
Sbjct: 92 KLTSKKEEEKEEEIPEPTK 110
>gnl|CDD|217020 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-terminal domain.
This domain is found associated with the Pfam tRNA
synthetase class II domain (pfam00587) and represents
the N-terminal domain of seryl-tRNA synthetase.
Length = 108
Score = 28.3 bits (64), Expect = 3.9
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKI 68
EEL+ ++ + K+ K KKKK+ + E +E + K ++AE + L +LDK+
Sbjct: 46 EELQAERNELSKEIGKAKKKKEDAEALIAEVKELKDELKALEAELRELEAELDKL 100
>gnl|CDD|148072 pfam06244, DUF1014, Protein of unknown function (DUF1014). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 122
Score = 28.6 bits (64), Expect = 4.1
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 9 RAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEE--------EEEEPDEYQKVVDA 56
RA E L K+++K + ++K KK ++ EE EE E + + DA
Sbjct: 2 RAQIEERLEKEQRKLEAPEEKSKKNAAREVPLEENLNVNRNRLEEGTVEARTIDDA 57
>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and
conversion].
Length = 793
Score = 30.4 bits (69), Expect = 4.1
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 174 RSLHD--AIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSD 224
R++ D A++ R + AVV GGG + +E ++ L+D LG +V H +
Sbjct: 130 RTIDDVEAMLDCARN-KKKAVVIGGGLLGLEAARGLKD---LGMEVTVVHIAP 178
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model [Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 30.0 bits (68), Expect = 4.1
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 14 EELRKK-----KKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKI 68
EEL+ K K+ K K +KK K ++ KKE +E +EE E + A L +KL I
Sbjct: 47 EELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106
>gnl|CDD|233160 TIGR00869, sec62, protein translocation protein, Sec62 family.
Members of the NSCC2 family have been sequenced from
various yeast, fungal and animals species including
Saccharomyces cerevisiae, Drosophila melanogaster and
Homo sapiens. These proteins are the Sec62 proteins,
believed to be associated with the Sec61 and Sec63
constituents of the general protein secretary systems of
yeast microsomes. They are also the non-selective cation
(NS) channels of the mammalian cytoplasmic membrane. The
yeast Sec62 protein has been shown to be essential for
cell growth. The mammalian NS channel proteins has been
implicated in platelet derived growth factor(PGDF)
dependent single channel current in fibroblasts. These
channels are essentially closed in serum deprived
tissue-culture cells and are specifically opened by
exposure to PDGF. These channels are reported to exhibit
equal selectivity for Na+, K+ and Cs+ with low
permeability to Ca2+, and no permeability to anions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 232
Score = 29.5 bits (66), Expect = 4.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 19 KKKKKKKKKKKKKKKKKKKKE 39
K KKK K KK KKK+ K+E
Sbjct: 210 KYSYKKKLKSKKLKKKQAKRE 230
Score = 29.1 bits (65), Expect = 6.3
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEE 40
K K KKK K KK KKK+ K E
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKRE 230
>gnl|CDD|99974 cd03801, GT1_YqgM_like, This family is most closely related to the
GT1 family of glycosyltransferases and named after YqgM
in Bacillus licheniformis about which little is known.
Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The
acceptor molecule can be a lipid, a protein, a
heterocyclic compound, or another carbohydrate residue.
This group of glycosyltransferases is most closely
related to the previously defined glycosyltransferase
family 1 (GT1). The members of this family may transfer
UDP, ADP, GDP, or CMP linked sugars. The diverse
enzymatic activities among members of this family
reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found
mainly in certain bacteria and archaea.
Length = 374
Score = 30.0 bits (68), Expect = 4.2
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 178 DAIMIVRRTIRN-HAVVAGGGAIEMELSKALRDYSGLGDKVR-TGHPSDN 225
+A+ +R+ + V+ G G + EL + GLGD+V G D
Sbjct: 219 EALAKLRKEYPDVRLVIVGDGPLREELEALAAEL-GLGDRVTFLGFVPDE 267
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 29.6 bits (67), Expect = 4.3
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 1 VQIYKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKK 38
+ + + +KKKKKKK KKKK KK
Sbjct: 164 KEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAV 201
Score = 28.4 bits (64), Expect = 8.9
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEE 40
+++KKKKKKK KKKK KK
Sbjct: 178 AEEEKKKKKKKSAKKKKLKKVAAV 201
Score = 28.4 bits (64), Expect = 9.0
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 2 QIYKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEE 41
++ K + E R KKK +++KKKKKKK K+++
Sbjct: 155 RLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKK 194
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 29.7 bits (67), Expect = 4.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEE 42
+EL + ++ KKK++ + KKKKE EE
Sbjct: 78 KELSASSLEAEQAKKKEEAEAKKKKEMEE 106
>gnl|CDD|218612 pfam05501, DUF755, Domain of unknown function (DUF755). This
family is predominated by ORFs from Circoviridae. The
function of this family remains to be determined.
Length = 122
Score = 28.5 bits (64), Expect = 4.5
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
Query: 17 RKKKKKKKK-----KKKKKKKKKKKKK 38
KKK+KK + KK KK+++
Sbjct: 78 HKKKRKKSRHVSSRSAKKISAKKRRRS 104
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 30.0 bits (67), Expect = 4.6
Identities = 11/35 (31%), Positives = 30/35 (85%)
Query: 24 KKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEW 58
+++++++++++++++EEEEEEEE +E ++ + EW
Sbjct: 864 EEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEW 898
>gnl|CDD|173966 cd08047, TAF7, TATA Binding Protein (TBP) Associated Factor 7
(TAF7) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 7 (TAF7) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryotes. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
preinitiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs are named after their
electrophoretic mobility in polyacrylamide gels in
different species. A new, unified nomenclature has been
suggested for the pol II TAFs to show the relationship
between TAF orthologs and paralogs. Several hypotheses
are proposed for TAFs functions such as serving as
activator-binding sites, core-promoter recognition or a
role in essential catalytic activity. Each TAF, with the
help of a specific activator, is required only for
expression of subset of genes and is not universally
involved for transcription as are GTFs. TAF7 is involved
in the regulation of the transition from PIC assembly to
initiation and elongation. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; the HFD is the interaction motif involved
in heterodimerization of the core histones and their
assembly into nucleosome octamers.
Length = 162
Score = 28.8 bits (65), Expect = 4.8
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 25 KKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEK 64
+K++ +K KK E EE E+E K + YE
Sbjct: 122 RKRRFRKTPSKKIAEIEEVEKEVKRLLKEDTEAVSVEYEV 161
>gnl|CDD|217553 pfam03430, TATR, Trans-activating transcriptional regulator. This
family of trans-activating transcriptional regulator
(TATR), also known as intermediate early protein 1, are
common to the Nucleopolyhedroviruses.
Length = 571
Score = 29.9 bits (67), Expect = 5.0
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
KK K KK++K KK + EEE +
Sbjct: 145 KKLVNKPKKRQKYKKATIQSPTSLTEEENYNT 176
Score = 29.5 bits (66), Expect = 7.3
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
++L K KK++K KK + EEE E
Sbjct: 145 KKLVNKPKKRQKYKKATIQSPTSLTEEENYNTEICT 180
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 30.1 bits (68), Expect = 5.0
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKIL---YEKLDKI 68
+ K++K K +EE++ D ++ D L EKL+KI
Sbjct: 215 EININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKI 268
>gnl|CDD|239572 cd03490, Topoisomer_IB_N_1, Topoisomer_IB_N_1: A subgroup of the
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB. Topo IB proteins include the
monomeric yeast and human topo I and heterodimeric topo
I from Leishmania donvanni. Topo I enzymes are divided
into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topos I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I have putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 217
Score = 29.5 bits (66), Expect = 5.0
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKE 39
H EE ++KKK K++K+ KKK++ K+E
Sbjct: 92 HL-EEEKEKKKNLNKEEKEAKKKERAKRE 119
>gnl|CDD|241400 cd13246, PH_Scd1, Shape and Conjugation Deficiency 1 Pleckstrin
homology (PH) domain. Fission yeast Scd1 is an
exchange factor for Cdc42 and an effector of Ras1, the
homolog of the human H-Ras. Scd2/Bem1 mediates Cdc42
activation by binding to Scd1/Cdc24 and to Cdc42. Ras1
regulates Scd1/Cdc24/Ral1, which is a putative guanine
nucleotide exchange factor for Cdc42, a member of the
Rho family of Ras-like proteins. Cdc42 then activates
the Shk1/Orb2 protein kinase. Scd1 interacts with Klp5
and Klp6 kinesins to mediate cytokinesis. PH domains
have diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They
share little sequence conservation, but all have a
common fold, which is electrostatically polarized. Less
than 10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved
across all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 148
Score = 28.8 bits (65), Expect = 5.1
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 12 FCEELRKKKKKKKKKKKKKKKKKKKKKE 39
C+E++KKKKK K K KKKKK+
Sbjct: 59 CCKEVKKKKKKSSLKSKSSSSSKKKKKK 86
>gnl|CDD|234533 TIGR04285, nucleoid_noc, nucleoid occlusion protein. This model
describes nucleoid occlusion protein, a close homolog to
ParB chromosome partitioning proteins including Spo0J in
Bacillus subtilis. Its gene often is located near the
gene for the Spo0J ortholog. This protein bind a
specific DNA sequence and blocks cytokinesis from
happening until chromosome segregation is complete.
Length = 255
Score = 29.4 bits (67), Expect = 5.1
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKK 36
EEL KK +K +K KKKKK++K
Sbjct: 188 EELIKKLLEKPEKPKKKKKRRKG 210
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 29.2 bits (65), Expect = 5.1
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 9 RAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
E+L K ++ ++ K ++K+ ++++EEEE EEE
Sbjct: 195 PKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEE 232
Score = 29.2 bits (65), Expect = 5.5
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 21 KKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
K ++ ++ K ++K+ ++E+EEEE E + Q+
Sbjct: 205 KLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQE 236
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 29.6 bits (67), Expect = 5.2
Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 5/104 (4%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKV--VDAEWKILYEKLDKIHAS 71
+ELR+ + K+ +K + +K + EEE+ E +++ +DAE L E LD++ A
Sbjct: 2 KELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAK 61
Query: 72 GAQVVLSKLPIG---DVATQYFADRDMFCAGRVPEEDLKRTMKA 112
A + + R G + ++ +
Sbjct: 62 PAASGEGGGGEEEEEEAKAEAAEFRAYLRGGDDALAEERKALST 105
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 29.2 bits (66), Expect = 5.2
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEE 43
E L + K + ++ + K+K K+ +KEE+EE
Sbjct: 136 ERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 29.9 bits (68), Expect = 5.3
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKI 68
+ L K K++ K + KKK ++ E +EE E + E + E+L K+
Sbjct: 535 EYVYSLEKSLKEEGDKLPEADKKKVEEAIEWLKEELEGEDK----EEIEAKTEELQKV 588
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 29.3 bits (66), Expect = 5.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEE 45
K+ K KKK KKK+K K+ E +E
Sbjct: 17 VAKQAKAKKKANKKKRKIYFKRAESFVKE 45
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns from
pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22.
ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a
conformational change in the spliceosome that leads to
protection of the 3'ss from targeted RNase H cleavage.
This change, which probably reflects binding of the 3'ss
PyAG in the catalytic centre of the spliceosome,
requires the ordered recruitment of Slu7, Prp18, and
Prp22 to the spliceosome. There is a close functional
relationship between Prp8, Prp18, and Slu7, and Prp18
interacts with Slu7, so that together they recruit Prp22
to the spliceosome. Most members of the family carry a
zinc-finger of the CCHC-type upstream of this domain.
Length = 236
Score = 29.3 bits (66), Expect = 5.4
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 14 EELRK--KKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEY 50
E LRK K+KK++ K +KK+ +K EE ++ P E
Sbjct: 159 ELLRKKEKEKKEQLKIQKKQSLLEKYGGEEHLDKPPKEL 197
>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral
inhibitor of apoptosis (IAP)-associated factor (VIAF)
subfamily; VIAF is a Phd-like protein that functions in
caspase activation during apoptosis. It was identified
as an IAP binding protein through a screen of a human
B-cell library using a prototype IAP. VIAF lacks a
consensus IAP binding motif and while it does not
function as an IAP antagonist, it still plays a
regulatory role in the complete activation of caspases.
VIAF itself is a substrate for IAP-mediated
ubiquitination, suggesting that it may be a target of
IAPs in the prevention of cell death. The similarity of
VIAF to Phd points to a potential role distinct from
apoptosis regulation. Phd functions as a cytosolic
regulator of G protein by specifically binding to G
protein betagamma (Gbg)-subunits. The C-terminal domain
of Phd adopts a thioredoxin fold, but it does not
contain a CXXC motif. Phd interacts with G protein beta
mostly through the N-terminal helical domain.
Length = 192
Score = 29.2 bits (66), Expect = 5.4
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD----EYQKVVDAEWKILYEK 64
EE + ++ + +KK + +EE +EEE D EY++ AE K L EK
Sbjct: 24 EEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEEYRRKRLAEMKALAEK 78
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 29.0 bits (65), Expect = 5.5
Identities = 13/22 (59%), Positives = 13/22 (59%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEE 40
K K KK KK KKKKKKK
Sbjct: 196 KGDKSSAKKDKKSKKKKKKKRS 217
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 29.3 bits (66), Expect = 5.6
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 7 QFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEE 40
RA +L +K K K KK ++
Sbjct: 178 SRRAKKAAKLSSTASSGDEKSPKSKAAPKKAGKK 211
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 28.1 bits (63), Expect = 5.6
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 29 KKKKKKKKKKEEEEEEEEPDE 49
+++++++EEEEEEEE E
Sbjct: 73 AAAEEEEEEEEEEEEEEEESE 93
Score = 27.7 bits (62), Expect = 6.5
Identities = 7/24 (29%), Positives = 18/24 (75%)
Query: 25 KKKKKKKKKKKKKKEEEEEEEEPD 48
+++++++++++EEEEE EE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEEA 96
Score = 27.7 bits (62), Expect = 8.0
Identities = 7/23 (30%), Positives = 19/23 (82%)
Query: 24 KKKKKKKKKKKKKKKEEEEEEEE 46
++++++++++++EEEE EEE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEE 95
Score = 27.3 bits (61), Expect = 8.7
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 28 KKKKKKKKKKKEEEEEEEEPDE 49
++++++++EEEEEEEE +E
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEE 94
>gnl|CDD|220121 pfam09135, Alb1, Alb1. Alb1 is a nuclear shuttling factor
involved in ribosome biogenesis.
Length = 112
Score = 28.2 bits (63), Expect = 5.8
Identities = 11/26 (42%), Positives = 21/26 (80%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKE 39
E + KKK++KKK K+ +K++K++K+
Sbjct: 44 EGVSKKKQRKKKPKRLTRKQRKRQKK 69
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 29.4 bits (67), Expect = 5.8
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 30 KKKKKKKKKEEEEEEEEPDE 49
++++++EEEEEEEEP E
Sbjct: 299 AAAEEEEEEEEEEEEEEPSE 318
Score = 29.1 bits (66), Expect = 7.1
Identities = 9/35 (25%), Positives = 23/35 (65%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
EEL++ + + +++++++++EEEEE E +
Sbjct: 286 EELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
>gnl|CDD|226138 COG3611, DnaB, Replication initiation/membrane attachment protein
[DNA replication, recombination, and repair].
Length = 417
Score = 29.7 bits (67), Expect = 5.8
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKK--KEEEEEEEEPDEYQKVVDAEWKILYEK 64
+E RK+K+ KK+ K+K+ K E ++ ++ E+ L E
Sbjct: 355 KENRKRKELALAKKQSSTTKRKENLPKWSNPEYKKTTSQEEQAKLEFIKLEEL 407
>gnl|CDD|116948 pfam08367, M16C_assoc, Peptidase M16C associated. This domain
appears in eukaryotes as well as bacteria and tends to
be found near the C-terminus of the metalloprotease
M16C (pfam05193).
Length = 248
Score = 29.1 bits (66), Expect = 6.1
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 14 EELRKKKKKKKKKKKKKKKKK---KKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHA 70
E L +K +++++K +KKK + K++ E E +E Q + + L I
Sbjct: 5 ETLEEKLNEEEREKLEKKKSSLSEEDKEKIIERGLELEELQSTPEDLSCLPTLTLSDIPR 64
Query: 71 SGAQVVLSKLPIGDVATQY 89
SG + L + +GDV +
Sbjct: 65 SGDEYPLEEEKVGDVPVLH 83
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 29.2 bits (66), Expect = 6.1
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 5 KGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEE 45
K + ++ F + K + K+KKK+KKK++KKKK+ E EE
Sbjct: 310 KRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEE 350
Score = 29.2 bits (66), Expect = 7.8
Identities = 11/51 (21%), Positives = 28/51 (54%)
Query: 2 QIYKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
Q+ + + E + K+K K K ++ +K + +E+++E++ +E +K
Sbjct: 292 QLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKK 342
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 29.5 bits (66), Expect = 6.2
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
++ + K+K K+K K+ K E E E + E
Sbjct: 791 IKAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREE 832
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 28.0 bits (63), Expect = 6.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 30 KKKKKKKKKEEEEEEEEPDE 49
++KK++EEEEEE+E E
Sbjct: 75 AAAEEKKEEEEEEEEKEESE 94
Score = 27.6 bits (62), Expect = 6.5
Identities = 8/22 (36%), Positives = 18/22 (81%)
Query: 25 KKKKKKKKKKKKKKEEEEEEEE 46
++KK+++++++E+EE EEE
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEE 96
Score = 27.6 bits (62), Expect = 7.1
Identities = 7/22 (31%), Positives = 18/22 (81%)
Query: 24 KKKKKKKKKKKKKKKEEEEEEE 45
++KK+++++++++EE EEE
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEE 96
Score = 27.6 bits (62), Expect = 7.6
Identities = 8/22 (36%), Positives = 18/22 (81%)
Query: 23 KKKKKKKKKKKKKKKKEEEEEE 44
++KK++++++++KEE EEE
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEE 96
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 29.6 bits (67), Expect = 6.4
Identities = 12/40 (30%), Positives = 27/40 (67%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKV 53
E +++ ++K+++ ++ KKK K+ +K EE EE + Y++
Sbjct: 328 ERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEA 367
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 29.6 bits (67), Expect = 6.9
Identities = 12/36 (33%), Positives = 26/36 (72%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
EEL K++ ++ KK + ++ ++ + +EE++EEEE +
Sbjct: 261 EELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSK 296
>gnl|CDD|227935 COG5648, NHP6B, Chromatin-associated proteins containing the HMG
domain [Chromatin structure and dynamics].
Length = 211
Score = 28.7 bits (64), Expect = 7.0
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 12 FCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
+ + K + + KKKK K KK +EE + P+
Sbjct: 174 ETKIISKAWSELDESKKKKYIDKYKKLKEEYDSFYPEA 211
>gnl|CDD|225816 COG3277, GAR1, RNA-binding protein involved in rRNA processing
[Translation, ribosomal structure and biogenesis].
Length = 98
Score = 27.7 bits (62), Expect = 7.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKK 38
K +KK+K +KK++ KK K
Sbjct: 77 PDKLIRKKRKLPRKKRRPKKPK 98
>gnl|CDD|236278 PRK08506, PRK08506, replicative DNA helicase; Provisional.
Length = 472
Score = 29.2 bits (66), Expect = 7.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEE 43
EE K+KK KK+ K++++ + K EE E
Sbjct: 394 EEKEKEKKAKKEGKEERRIHFQNKSIEEAE 423
>gnl|CDD|185507 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Provisional.
Length = 145
Score = 28.1 bits (63), Expect = 7.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKK 38
KKK KK K KK K KK+K
Sbjct: 7 AKKKAKKAAKAAKKGVKVKKRK 28
>gnl|CDD|150786 pfam10153, DUF2361, Uncharacterized conserved protein (DUF2361).
This is a region of 120 amino acids that is conserved in
a family of proteins found from plants to fungi. The
function is not known.
Length = 114
Score = 28.0 bits (63), Expect = 7.3
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
RKK ++ K+ +KK ++ +KE ++ +E+ + + VD + I + K +K
Sbjct: 61 RKKATRRLKQLEKKLEETSDEKEIKDLKEQLSKAE--VDLNYVIYFPKTEK 109
>gnl|CDD|203444 pfam06424, PRP1_N, PRP1 splicing factor, N-terminal. This domain
is specific to the N-terminal part of the prp1 splicing
factor, which is involved in mRNA splicing (and possibly
also poly(A)+ RNA nuclear export and cell cycle
progression). This domain is specific to the N terminus
of the RNA splicing factor encoded by prp1. It is
involved in mRNA splicing and possibly also poly(A)and
RNA nuclear export and cell cycle progression.
Length = 131
Score = 28.0 bits (63), Expect = 7.3
Identities = 9/31 (29%), Positives = 22/31 (70%)
Query: 25 KKKKKKKKKKKKKKEEEEEEEEPDEYQKVVD 55
++ +++KK++++KE+EE E+ +E K+
Sbjct: 72 ERMDERRKKRREQKEKEEIEKYREENPKIQQ 102
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion
and trafficking].
Length = 150
Score = 28.1 bits (63), Expect = 7.4
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEE----EEPDEYQKVVDAEWKILY 62
EL K+ +++KK +K K+K E+EE + E V A K L+
Sbjct: 44 QEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATENNTVKATKKQLF 99
>gnl|CDD|148635 pfam07139, DUF1387, Protein of unknown function (DUF1387). This
family represents a conserved region approximately 300
residues long within a number of hypothetical proteins
of unknown function that seem to be restricted to
mammals.
Length = 301
Score = 29.2 bits (65), Expect = 7.4
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 21 KKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQV 75
KKK KKKK K K + K +EE P+E D + ++++ HA+G+
Sbjct: 6 KKKNKKKKSKPKPEAPAKSASKEETTPEEQAAPGDEK-----DEVNGFHANGSAD 55
>gnl|CDD|235638 PRK05896, PRK05896, DNA polymerase III subunits gamma and tau;
Validated.
Length = 605
Score = 29.4 bits (66), Expect = 7.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVV 54
HF + K KKK + K++ KKEE E+E + +K+
Sbjct: 407 HFDTLYKTKIFYHKKKINQNNKEQDIKKEELLEKEFVKKSEKIP 450
>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface
glycoprotein C-terminal domain. The trypanosome
parasite expresses these proteins to evade the immune
response.
Length = 98
Score = 27.4 bits (61), Expect = 7.7
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 13 CEELRKKKKKKKKK-----KKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
C + K K + K+K KK+ K K K+ + ++ P + + K DK
Sbjct: 1 CNKKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDK 60
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 29.3 bits (66), Expect = 7.7
Identities = 11/59 (18%), Positives = 32/59 (54%)
Query: 8 FRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLD 66
F+ +E ++ ++K ++ ++ + +EE ++E P + +K+ + + +L E+L
Sbjct: 455 FKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDTYLLLEELG 513
>gnl|CDD|153271 cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization
module that binds membranes and detects membrane
curvature. BAR domains are dimerization, lipid binding
and curvature sensing modules found in many different
proteins with diverse functions including organelle
biogenesis, membrane trafficking or remodeling, and cell
division and migration. Mutations in BAR containing
proteins have been linked to diseases and their
inactivation in cells leads to altered membrane
dynamics. A BAR domain with an additional N-terminal
amphipathic helix (an N-BAR) can drive membrane
curvature. These N-BAR domains are found in amphiphysins
and endophilins, among others. BAR domains are also
frequently found alongside domains that determine lipid
specificity, such as the Pleckstrin Homology (PH) and
Phox Homology (PX) domains which are present in beta
centaurins (ACAPs and ASAPs) and sorting nexins,
respectively. A FES-CIP4 Homology (FCH) domain together
with a coiled coil region is called the F-BAR domain and
is present in Pombe/Cdc15 homology (PCH) family
proteins, which include Fes/Fes tyrosine kinases, PACSIN
or syndapin, CIP4-like proteins, and srGAPs, among
others. The Inverse (I)-BAR or IRSp53/MIM homology
Domain (IMD) is found in multi-domain proteins, such as
IRSp53 and MIM, that act as scaffolding proteins and
transducers of a variety of signaling pathways that link
membrane dynamics and the underlying actin cytoskeleton.
BAR domains form dimers that bind to membranes, induce
membrane bending and curvature, and may also be involved
in protein-protein interactions. The I-BAR domain
induces membrane protrusions in the opposite direction
compared to classical BAR and F-BAR domains, which
produce membrane invaginations. BAR domains that also
serve as protein interaction domains include those of
arfaptin and OPHN1-like proteins, among others, which
bind to Rac and Rho GAP domains, respectively.
Length = 194
Score = 28.6 bits (64), Expect = 7.8
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 13 CEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHAS 71
++ R ++K KK +KKKK + E EEE E ++ + + L E L+K+
Sbjct: 103 LDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREELIEDLNKLEEK 161
>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase. Grn1 (yeast)
and GNL3L (human) are putative GTPases which are
required for growth and play a role in processing of
nucleolar pre-rRNA. This family contains a potential
nuclear localisation signal.
Length = 80
Score = 26.8 bits (60), Expect = 7.9
Identities = 10/38 (26%), Positives = 26/38 (68%)
Query: 8 FRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEE 45
F+ EE+ +KK+K++++K+++K+ +K ++ E +
Sbjct: 43 FKEEILEEIEEKKRKQEEEKERRKEARKAERAEARKRG 80
>gnl|CDD|149515 pfam08492, SRP72, SRP72 RNA-binding domain. This region has been
identified as the binding site of the SRP72 protein to
SRP RNA.
Length = 57
Score = 26.3 bits (58), Expect = 8.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKK 38
KKK ++KKKK KKK+K K
Sbjct: 9 AKKKPGTEQKKKKSAKKKRKPK 30
>gnl|CDD|222863 PHA02540, 61, DNA primase; Provisional.
Length = 337
Score = 28.8 bits (65), Expect = 8.0
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 20/81 (24%)
Query: 28 KKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVAT 87
+ K++ K + + + E + +KV+ EKL L LP
Sbjct: 86 RFKERGTGKGRPVPKPKFEFKKEKKVI--------EKLPFC------ERLDTLPEDHPII 131
Query: 88 QYFADRDMFCAGRVPEEDLKR 108
+Y +R +P++ K
Sbjct: 132 KYVENR------CIPKDKWKL 146
>gnl|CDD|213527 TIGR00390, hslU, ATP-dependent protease HslVU, ATPase subunit.
This model represents the ATPase subunit of HslVU, while
the proteasome-related peptidase subunit is HslV.
Residues 54-61 of the model contain a P-loop ATP-binding
motif. Cys-287 of E. coli (position 308 in the seed
alignment), studied in MEDLINE:98389714, is Ser in other
members of the seed alignment [Protein fate, Protein
folding and stabilization].
Length = 441
Score = 29.0 bits (65), Expect = 8.0
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEEE----EEEPDEYQKVVDAEWKILYEKLDKIHASGA 73
KKKK+K K K+ KK EE + EE E V+ I +++DKI G
Sbjct: 207 DKKKKRKLKIKEAKKALIAEEAAKLVDPEEIKQEAIDRVEQSGIIFIDEIDKIAKKGE 264
>gnl|CDD|219783 pfam08297, U3_snoRNA_assoc, U3 snoRNA associated. This family of
proteins is associated with U3 snoRNA. U3 snoRNA is
required for nucleolar processing of pre-18S ribosomal
RNA.
Length = 87
Score = 27.0 bits (60), Expect = 8.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 7 QFRAHFCEELRKKKKKKKKKKKKKKKKKKKK 37
EE KK+KKK K + KK +K+ K
Sbjct: 18 TPPPESYEEELKKQKKKNKLRFLKKLEKRPK 48
Score = 27.0 bits (60), Expect = 9.0
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 14 EELRKKKKKKKKK--KKKKKKKKKKKK 38
EEL+K+KKK K + KK +K+ K KK
Sbjct: 26 EELKKQKKKNKLRFLKKLEKRPKDVKK 52
>gnl|CDD|227441 COG5110, RPN1, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 881
Score = 29.1 bits (65), Expect = 8.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKL 65
++ + +K+ KK KKKEEEE+ E D K + ++L E++
Sbjct: 14 EQSQISPEKQTPNKKDKKKEEEEQLSEEDAMLK---GDLELLVERI 56
>gnl|CDD|240577 cd12950, RRP7_Rrp7p, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p) and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p. Rrp7p is encoded by YCL031C
gene from Saccharomyces cerevisiae. It is an essential
yeast protein involved in pre-rRNA processing and
ribosome assembly. Rrp7p contains an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 128
Score = 28.0 bits (63), Expect = 8.2
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
Query: 9 RAHFCEELRKKKKKKKKKKKKKKK------KKKKKKEEEEE 43
A E KK+K+KKKKKKK+ + ++KKKEE+ +
Sbjct: 69 EAGKAAEEEKKEKEKKKKKKKELEDFYRFQLREKKKEEQAD 109
>gnl|CDD|224000 COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit
(contains helicase and exonuclease domains) [DNA
replication, recombination, and repair].
Length = 1139
Score = 29.4 bits (66), Expect = 8.5
Identities = 11/56 (19%), Positives = 22/56 (39%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHAS 71
+K KKK K+ K + + EE E + + + L + L+++
Sbjct: 285 QKKLKKKTKEAKLLARPPLHAEFEEIENRILLADELLRLAPRLRALLKLLEELIER 340
>gnl|CDD|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2. This
family consists of several Eukaryotic rRNA processing
protein EBP2 sequences. Ebp2p is required for the
maturation of 25S rRNA and 60S subunit assembly. Ebp2p
may be one of the target proteins of Rrs1p for executing
the signal to regulate ribosome biogenesis. This family
also plays a role in chromosome segregation.
Length = 270
Score = 28.9 bits (65), Expect = 8.6
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
E+L+++ K+KK +K KK KKK+K +E + D
Sbjct: 153 EKLQERAKEKKDMLEKIKKLKKKRKGGGDEGDLFD 187
>gnl|CDD|191634 pfam06886, TPX2, Targeting protein for Xklp2 (TPX2). This family
represents a conserved region approximately 60 residues
long within the eukaryotic targeting protein for Xklp2
(TPX2). Xklp2 is a kinesin-like protein localised on
centrosomes throughout the cell cycle and on spindle
pole microtubules during metaphase. In Xenopus, it has
been shown that Xklp2 protein is required for
centrosome separation and maintenance of spindle
bi-polarity. TPX2 is a microtubule-associated protein
that mediates the binding of the C-terminal domain of
Xklp2 to microtubules. It is phosphorylated during
mitosis in a microtubule-dependent way.
Length = 57
Score = 26.2 bits (58), Expect = 8.7
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEE 45
E KK ++K+K + +K++ + +++EEEEE
Sbjct: 12 EFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
>gnl|CDD|220763 pfam10453, NUFIP1, Nuclear fragile X mental
retardation-interacting protein 1 (NUFIP1). Proteins
in this family have been implicated in the assembly of
the large subunit of the ribosome and in telomere
maintenance. Some proteins in this family contain a
CCCH zinc finger. This family contains a protein called
human fragile X mental retardation-interacting protein
1, which is known to bind RNA and is phosphorylated
upon DNA damage.
Length = 57
Score = 26.2 bits (58), Expect = 8.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
EE+ K +++KK K +KKKK EEE +
Sbjct: 22 EEIAKWIEERKKNYPTKANIEKKKKAEEERIKR 54
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 29.2 bits (66), Expect = 9.0
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 17 RKKKKKKKKKKKKKKKK----KKKKKEEEEEEEE 46
R+KKK KK +K+ + KK+KE + E+
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEK 117
>gnl|CDD|218215 pfam04696, Pinin_SDK_memA, pinin/SDK/memA/ protein conserved
region. Members of this family have very varied
localisations within the eukaryotic cell. pinin is
known to localise at the desmosomes and is implicated
in anchoring intermediate filaments to the desmosomal
plaque. SDK2/3 is a dynamically localised nuclear
protein thought to be involved in modulation of
alternative pre-mRNA splicing. memA is a tumour marker
preferentially expressed in human melanoma cell lines.
A common feature of the members of this family is that
they may all participate in regulating protein-protein
interactions.
Length = 131
Score = 27.8 bits (62), Expect = 9.0
Identities = 11/38 (28%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 16 LRKKKKKKKKKKKKKKKKKK-KKKEEEEEEEEPDEYQK 52
L+K +++ + K+K++ + ++K EE+E++E +E +K
Sbjct: 20 LQKFSQEESRLTSKEKRRAEIEQKLEEQEKQEREELRK 57
>gnl|CDD|212464 cd01717, Sm_B, Sm protein B. The eukaryotic Sm proteins (B/B',
D1, D2, D3, E, F and G) assemble into a
hetero-heptameric ring around the Sm site of the
2,2,7-trimethyl guanosine (m3G) capped U1, U2, U4 and
U5 snRNAs (Sm snRNAs) forming the core of the snRNP
particle. The snRNP particle, in turn, assembles with
other components onto the pre-mRNA to form the
spliceosome which is responsible for the excision of
introns and the ligation of exons. Members of this
family share a highly conserved Sm fold, containing an
N-terminal helix followed by a strongly bent
five-stranded antiparallel beta-sheet.
Length = 80
Score = 26.7 bits (60), Expect = 9.1
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 13 CEELRKKKKKKKKKKKKKKKK 33
CEE RK K KKKKK +++++K
Sbjct: 41 CEEFRKIKPKKKKKGEEREEK 61
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 28.7 bits (64), Expect = 9.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKK 38
E+ ++ K+KKKKK KKKK K
Sbjct: 80 EDWFSPNQENKQKKKKKDKKKKSPK 104
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 29.0 bits (65), Expect = 9.2
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 10 AHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
AHF K + KK K + + K EEEE+EE
Sbjct: 110 AHFA----KGDQSASAKKAKGRGRHASKLTEEEEDEE 142
>gnl|CDD|220357 pfam09716, ETRAMP, Malarial early transcribed membrane protein
(ETRAMP). These sequences represent a family of
proteins from the malaria parasite Plasmodium
falciparum, several of which have been shown to be
expressed specifically in the ring stage as well as the
rodent parasite Plasmodium yoelii. A homologue from
Plasmodium chabaudi was localized to the
parasitophorous vacuole membrane. Members have an
initial hydrophobic, Phe/Tyr-rich, stretch long enough
to span the membrane, a highly charged region rich in
Lys, a second putative transmembrane region and a
second highly charged, low complexity sequence region.
Some members have up to 100 residues of additional
C-terminal sequence. These genes have been shown to be
found in the sub-telomeric regions of both Plasmodium
falciparum and P. yoelii chromosomes.
Length = 82
Score = 26.8 bits (60), Expect = 9.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKK 38
+KK KK KK +KKKK KK
Sbjct: 28 VAKKKKLKKLKKIDDDLEKKKKNKK 52
>gnl|CDD|100111 cd05833, Ribosomal_P2, Ribosomal protein P2. This subfamily
represents the eukaryotic large ribosomal protein P2.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P2 is located in the L12 stalk, with proteins
P1, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers). Bacteria may have four or six copies
of L7/L12 (two or three homodimers) depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plants have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site in the C-terminal region
of P2. TCS inactivates the ribosome by depurinating a
specific adenine in the sarcin-ricin loop of 28S rRNA.
Length = 109
Score = 27.2 bits (61), Expect = 9.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 29 KKKKKKKKKKEEEEEEEEPD 48
KK++KKEE EEE + D
Sbjct: 83 AAAAKKEEKKEESEEESDDD 102
>gnl|CDD|240292 PTZ00148, PTZ00148, 40S ribosomal protein S8; Provisional.
Length = 205
Score = 28.4 bits (64), Expect = 9.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 21 KKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVD 55
KKKK KK+++ KK KKK E + E + +D
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHKID 157
>gnl|CDD|221712 pfam12687, DUF3801, Protein of unknown function (DUF3801). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 158 and 187 amino
acids in length. This family includes the PcfB protein.
Length = 137
Score = 27.6 bits (62), Expect = 9.8
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKE 39
++L+K K+++ KKK++K K K KK+
Sbjct: 112 KKLKKFKEEQAAKKKERKDKVKNKKK 137
>gnl|CDD|222812 PHA00727, PHA00727, hypothetical protein.
Length = 278
Score = 28.7 bits (64), Expect = 9.9
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 2 QIYKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKK 37
++ K QF EL KKKKK KK+K + K KK
Sbjct: 53 ELKKQQFE-QLKAELSKKKKKFKKEKVDVRVKVVKK 87
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional.
Length = 546
Score = 28.8 bits (64), Expect = 10.0
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 356 DAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDI 393
+AV+ TLGP+G + ++ G I+ DG T+ K +++
Sbjct: 25 NAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIEL 62
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.373
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,425,506
Number of extensions: 3300843
Number of successful extensions: 20834
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15800
Number of HSP's successfully gapped: 1356
Length of query: 632
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 529
Effective length of database: 6,369,140
Effective search space: 3369275060
Effective search space used: 3369275060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.5 bits)