RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17074
(632 letters)
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_A*
Length = 545
Score = 390 bits (1004), Expect = e-129
Identities = 114/355 (32%), Positives = 174/355 (49%), Gaps = 56/355 (15%)
Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
Q IL+LKEGT+ QGK +NI A +A+ DAVRTTLGP+GMDK++VD G ISNDG
Sbjct: 5 QVPILVLKEGTQREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDG 64
Query: 385 ATIMKLLDIVHPAAKTLVDIAKSQDAEI-------------------------------- 412
ATI+K +D+ HP AK +V+++K+QD +
Sbjct: 65 ATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVIS 124
Query: 413 ---------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD 457
+ ++ L K A TALS K F + +VV AV ++ +
Sbjct: 125 NGYRLAVNEARKIIDEIAEKSTDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAE 184
Query: 458 L------LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511
+ + I + K GG++ D+ + G+ K ++ P KN KIAL++
Sbjct: 185 VRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSK---MPDVVKNAKIALIDS 241
Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQY 571
LE+K A++++ + Q ++ E + ++KI SGA VVL + I DVA Y
Sbjct: 242 ALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHY 301
Query: 572 FADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
A ++ RV + D+++ KA G ++T DL SVLG +ER+IG +R
Sbjct: 302 LAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDR 356
Score = 247 bits (634), Expect = 1e-74
Identities = 65/179 (36%), Positives = 99/179 (55%), Gaps = 3/179 (1%)
Query: 36 KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
KK E E + +P + Q ++ E + ++KI SGA VVL + I DVA Y A
Sbjct: 245 IKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAK 304
Query: 93 RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK 152
++ RV + D+++ KA G ++T DL SVLG +ER+IG +R GCK
Sbjct: 305 EGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCK 364
Query: 153 NARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
N + +I++RGG + + E ER+L+DAI +V T + + GGGA+E EL+ L Y+
Sbjct: 365 NPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYA 423
Score = 111 bits (279), Expect = 8e-26
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
P KN KIAL++ LE+K A++++ + Q ++ E + ++KI SGA
Sbjct: 227 MPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGAN 286
Query: 298 VVLSKLPIGDVATQYFADR 316
VVL + I DVA Y A
Sbjct: 287 VVLCQKGIDDVAQHYLAKE 305
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 383 bits (987), Expect = e-127
Identities = 220/348 (63%), Positives = 253/348 (72%), Gaps = 53/348 (15%)
Query: 332 KEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLL 391
KEGT++SQG PQL+SNI+ACQ + +AVRTTLGPRGMDKLIVD GK+TISNDGATI+KLL
Sbjct: 1 KEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLL 60
Query: 392 DIVHPA--------------------------------AKTLVD-------IAK-----S 407
D+VHPA K V+ I + +
Sbjct: 61 DVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTAT 120
Query: 408 QDA---------EIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL 458
Q A ++K D E R LLEKCA TALSSKLI QQK FF+KMVVDAVM LDDL
Sbjct: 121 QLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDDL 180
Query: 459 LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAE 518
L L MIGIKKV GGALE+S LV GV+FKKTF+YAGFEMQPK Y NP IALLN+ELELKAE
Sbjct: 181 LQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAE 240
Query: 519 RDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMF 578
+DNAEIR+ +VE+YQ +VDAEW ILY+KL+KIH SGA+VVLSKLPIGDVATQYFADRDMF
Sbjct: 241 KDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMF 300
Query: 579 CAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
CAGRVPEEDLKRTM ACGG++ T+ + L+ VLG C VF+E QIG ER
Sbjct: 301 CAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGER 348
Score = 251 bits (643), Expect = 4e-76
Identities = 129/179 (72%), Positives = 149/179 (83%)
Query: 33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
K +K E ++YQ +VDAEW ILY+KL+KIH SGA+VVLSKLPIGDVATQYFAD
Sbjct: 237 LKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFAD 296
Query: 93 RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK 152
RDMFCAGRVPEEDLKRTM ACGG++ T+ + L+ VLG C VF+E QIG ER+N F+GC
Sbjct: 297 RDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCP 356
Query: 153 NARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
A+TCTII+RGGAEQF+EETERSLHDAIMIVRR I+N +VVAGGGAIEMELSK LRDYS
Sbjct: 357 KAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYS 415
Score = 117 bits (295), Expect = 5e-28
Identities = 67/83 (80%), Positives = 76/83 (91%)
Query: 234 GFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHA 293
GFEMQPK Y NP IALLN+ELELKAE+DNAEIR+ +VE+YQ +VDAEW ILY+KL+KIH
Sbjct: 215 GFEMQPKKYHNPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHH 274
Query: 294 SGAQVVLSKLPIGDVATQYFADR 316
SGA+VVLSKLPIGDVATQYFADR
Sbjct: 275 SGAKVVLSKLPIGDVATQYFADR 297
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g*
Length = 550
Score = 381 bits (982), Expect = e-126
Identities = 183/355 (51%), Positives = 239/355 (67%), Gaps = 53/355 (14%)
Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
P I++LKEGT+ SQGK Q+ISNINAC AV +A++ TLGP G D LIV N K+TISNDG
Sbjct: 7 TPTIVVLKEGTDASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDG 66
Query: 385 ATIMKLLDIVHPA--------------------------------AKTLVD-------IA 405
ATI+KLLD+VHPA AK ++ I
Sbjct: 67 ATILKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIM 126
Query: 406 K-----SQDA-----EIQ---KSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAV 452
K A E+ S+ R LLE+CA TA+SSKLIH FF KM VDAV
Sbjct: 127 KGYRKAVSLAVEKINELAVDITSEKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDAV 186
Query: 453 MSLD-DLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511
+SLD + L +IGIKK+ GGA+E+SL ++GV+FKKTF+YAGFE QPK + NPKI LN+
Sbjct: 187 LSLDRNDLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNV 246
Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQY 571
ELELKAE+DNAE+R++ VE+YQ +VDAEW++++EKL ++ +GA +VLSKLPIGD+ATQ+
Sbjct: 247 ELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQF 306
Query: 572 FADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
FADR++FCAGRV +D+ R ++A GG++ +T D+ LGTCA+F+E QIGSER
Sbjct: 307 FADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSER 361
Score = 251 bits (644), Expect = 6e-76
Identities = 102/179 (56%), Positives = 140/179 (78%)
Query: 33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
K +K E E ++YQ +VDAEW++++EKL ++ +GA +VLSKLPIGD+ATQ+FAD
Sbjct: 250 LKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFAD 309
Query: 93 RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK 152
R++FCAGRV +D+ R ++A GG++ +T D+ LGTCA+F+E QIGSER+N+F GC
Sbjct: 310 RNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGCP 369
Query: 153 NARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
A+TCT+++RGGAEQ + E ERSLHDAIMIV+R ++N +VAGGGA EME+SK LRDYS
Sbjct: 370 QAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYS 428
Score = 117 bits (295), Expect = 7e-28
Identities = 54/83 (65%), Positives = 72/83 (86%)
Query: 234 GFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHA 293
GFE QPK + NPKI LN+ELELKAE+DNAE+R++ VE+YQ +VDAEW++++EKL ++
Sbjct: 228 GFEQQPKKFNNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEE 287
Query: 294 SGAQVVLSKLPIGDVATQYFADR 316
+GA +VLSKLPIGD+ATQ+FADR
Sbjct: 288 TGANIVLSKLPIGDLATQFFADR 310
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a*
Length = 559
Score = 380 bits (978), Expect = e-125
Identities = 105/372 (28%), Positives = 165/372 (44%), Gaps = 68/372 (18%)
Query: 320 SQVFRQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKST 379
SQ+F + L G E G N+ A AV + V+++LGP G+DK++VD G T
Sbjct: 2 SQLFNNSRSDTLFLGGEKISGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFT 61
Query: 380 ISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI--------------------------- 412
++NDGATI+ LLD+ HPA K LV++A+ QD EI
Sbjct: 62 VTNDGATILSLLDVQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIH 121
Query: 413 -----------------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVV 449
S + L A T++SSK+I FFS MVV
Sbjct: 122 PTTIITGFRVALREAIRFINEVLSTSVDTLGKETLINIAKTSMSSKIIGADSDFFSNMVV 181
Query: 450 DAVMSLDDL-------LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYK 502
DA++++ P+ + + K G + +SLLV G + T A PK
Sbjct: 182 DALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQA---MPKRIA 238
Query: 503 --NPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLS 560
N KIA L++ L+ +I +D E+ +++ E I+ E++ KI +GAQVVL+
Sbjct: 239 GGNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLT 298
Query: 561 KLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDL------NDSVLGTC 614
I D+ + F + + R +EDL+R +A G ++++ +L S LG C
Sbjct: 299 TKGIDDLCLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLC 358
Query: 615 AVFDERQIGSER 626
+ + +
Sbjct: 359 DEVVQAKFSDDE 370
Score = 241 bits (618), Expect = 4e-72
Identities = 52/185 (28%), Positives = 98/185 (52%), Gaps = 9/185 (4%)
Query: 36 KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
K + + ++P++ +++ E I+ E++ KI +GAQVVL+ I D+ + F +
Sbjct: 253 KARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVE 312
Query: 93 RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDL------NDSVLGTCAVFDERQIGSERFN 146
+ R +EDL+R +A G ++++ +L S LG C + + +
Sbjct: 313 AKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECI 372
Query: 147 VFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKA 206
+ G + +II+RG + L+E ERSLHD++ +V+RT+ + VV GGG +E L+
Sbjct: 373 LIKGTSKHSSSSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIY 432
Query: 207 LRDYS 211
L +++
Sbjct: 433 LDNFA 437
Score = 106 bits (267), Expect = 2e-24
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 236 EMQPKTYK--NPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHA 293
+ PK N KIA L++ L+ +I +D E+ +++ E I+ E++ KI
Sbjct: 231 QAMPKRIAGGNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIID 290
Query: 294 SGAQVVLSKLPIGDVATQYFADR 316
+GAQVVL+ I D+ + F +
Sbjct: 291 AGAQVVLTTKGIDDLCLKEFVEA 313
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II
chaperonin, binding, chaperone; HET: ANP; 2.24A
{Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A*
3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A*
3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Length = 543
Score = 378 bits (974), Expect = e-125
Identities = 97/354 (27%), Positives = 169/354 (47%), Gaps = 55/354 (15%)
Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
Q +L E + G+ NI A + + + VR+TLGP+GMDK++VD G ++NDG
Sbjct: 2 SQQPGVLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDG 61
Query: 385 ATIMKLLDIVHPAAKTLVDIAKSQDA---------------------------------- 410
TI++ + + HPAAK L+++AK+Q+
Sbjct: 62 VTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVV 121
Query: 411 ---------------EIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL 455
I + + +L K A T+++ K + K ++++V+AV ++
Sbjct: 122 KGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAV 181
Query: 456 DDL---LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIE 512
D + ++I I+K +G +++D+ L+ GV K A PK + KIALLN
Sbjct: 182 VDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQ---MPKKVTDAKIALLNCA 238
Query: 513 LELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYF 572
+E+K +AEIR+ + + ++ E K+L + + +I ASGA V+ + I D+A Y
Sbjct: 239 IEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYL 298
Query: 573 ADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
A + A RV + D+++ KA G V+ L+ LG + +ER+I +
Sbjct: 299 AKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDS 352
Score = 248 bits (635), Expect = 8e-75
Identities = 57/179 (31%), Positives = 99/179 (55%), Gaps = 3/179 (1%)
Query: 36 KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
K+ E + E +P + + ++ E K+L + + +I ASGA V+ + I D+A Y A
Sbjct: 241 IKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAK 300
Query: 93 RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK 152
+ A RV + D+++ KA G V+ L+ LG + +ER+I + CK
Sbjct: 301 EGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECK 360
Query: 153 NARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
+ + T+++RG E +EE R++ DA+ +V TI + +V+GGG+ E+ELS LR+Y+
Sbjct: 361 HPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 419
Score = 111 bits (280), Expect = 6e-26
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
PK + KIALLN +E+K +AEIR+ + + ++ E K+L + + +I ASGA
Sbjct: 223 MPKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGAN 282
Query: 298 VVLSKLPIGDVATQYFADR 316
V+ + I D+A Y A
Sbjct: 283 VLFCQKGIDDLAQHYLAKE 301
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d*
Length = 528
Score = 374 bits (962), Expect = e-123
Identities = 80/360 (22%), Positives = 148/360 (41%), Gaps = 60/360 (16%)
Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
++ + + +NI A ++V DA+RT+LGP+GMDK+I G+ ISNDG
Sbjct: 2 SAKVPSNATFKNKEKPQEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDG 61
Query: 385 ATIMKLLDIVHPAAKTLVDIAKSQDA---------------------------------- 410
TI+K + I+HP A+ LV+++ +QD+
Sbjct: 62 HTILKQMAILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIA 121
Query: 411 ---------------EIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL 455
E+ S R L + A+T+LSSK++ Q F + + VD+V+ +
Sbjct: 122 DSFQSAAKRSVDILLEMCHKVSLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKI 181
Query: 456 DDL----LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511
D + LN I + K GG ++D+ ++DGV +T + P + KI L+
Sbjct: 182 SDENSKNVDLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKS--AGGPTRKEKAKIGLIQF 239
Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GD 566
++ I ++ + K++ E L KI + V+L + I D
Sbjct: 240 QISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVND 299
Query: 567 VATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
+A + + ++ + E+++ K G + + L + + +E +
Sbjct: 300 LALHFLSKLNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSADLVEEIDSDGSK 359
Score = 232 bits (593), Expect = 8e-69
Identities = 41/187 (21%), Positives = 83/187 (44%), Gaps = 11/187 (5%)
Query: 36 KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVAT 87
K + E + + K++ E L KI + V+L + I D+A
Sbjct: 243 PPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLAL 302
Query: 88 QYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNV 147
+ + ++ + E+++ K G + + L + + +E +
Sbjct: 303 HFLSKLNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSADLVEEIDSDGSKIVR 362
Query: 148 FSGCKNA---RTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELS 204
+G +N T ++++RG ++ETERSLHDA+ ++R ++ ++AGGGA E+E+S
Sbjct: 363 VTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPEIEIS 422
Query: 205 KALRDYS 211
+ L +
Sbjct: 423 RRLSKEA 429
Score = 106 bits (266), Expect = 2e-24
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 5/86 (5%)
Query: 236 EMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASG 295
P + KI L+ ++ I ++ + K++ E L KI +
Sbjct: 223 AGGPTRKEKAKIGLIQFQISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAK 282
Query: 296 AQVVLSKLPI-----GDVATQYFADR 316
V+L + I D+A + +
Sbjct: 283 CNVLLIQKSILRDAVNDLALHFLSKL 308
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_B* 1e0r_B
Length = 543
Score = 374 bits (962), Expect = e-123
Identities = 108/357 (30%), Positives = 181/357 (50%), Gaps = 59/357 (16%)
Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
QP I +LKEGT+ GK + NI A A+ ++VR++LGPRGMDK++VD G I+NDG
Sbjct: 5 QP-IFILKEGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDG 63
Query: 385 ATIMKLLDIVHPAAKTLVD---------------------------------------IA 405
TI+K +D+ HPAAK +V+ I+
Sbjct: 64 VTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVIS 123
Query: 406 K-----SQDA-----EIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL 455
+ S++A EI + + LL K A T+L+SK K +++ +AV S+
Sbjct: 124 EGYRMASEEAKRVIDEISTKIGADEKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSV 183
Query: 456 DDL------LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALL 509
+L + + I + K GGA++D+ L++G+ K + G P K+ KIALL
Sbjct: 184 AELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGM---PDVVKDAKIALL 240
Query: 510 NIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVAT 569
+ LE+K + +R++ QK + E +L E +DKI + GA VV+++ I D+A
Sbjct: 241 DAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQ 300
Query: 570 QYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
Y + ++ RV + D+ + KA G ++++T +++ S LGT ++ ++G +
Sbjct: 301 HYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDY 357
Score = 248 bits (636), Expect = 6e-75
Identities = 58/179 (32%), Positives = 101/179 (56%), Gaps = 3/179 (1%)
Query: 36 KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
KK E + E+P QK + E +L E +DKI + GA VV+++ I D+A Y +
Sbjct: 246 IKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSR 305
Query: 93 RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK 152
++ RV + D+ + KA G ++++T +++ S LGT ++ ++G + +GCK
Sbjct: 306 AGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCK 365
Query: 153 NARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
N + +I+VRG E ++E ERS+ D++ +V + + A AGGGA E++ LR Y+
Sbjct: 366 NPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYA 424
Score = 110 bits (278), Expect = 8e-26
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
P K+ KIALL+ LE+K + +R++ QK + E +L E +DKI + GA
Sbjct: 228 MPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGAN 287
Query: 298 VVLSKLPIGDVATQYFADR 316
VV+++ I D+A Y +
Sbjct: 288 VVITQKGIDDMAQHYLSRA 306
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone,
NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Length = 553
Score = 371 bits (954), Expect = e-121
Identities = 113/357 (31%), Positives = 187/357 (52%), Gaps = 58/357 (16%)
Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
+++LKEG+ + GK + +NI A +AV +A+++T GPRGMDK++VD G TI+NDG
Sbjct: 13 GIPVIILKEGSSRTYGKEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDG 72
Query: 385 ATIMKLLDIVHPAAKTLVD---------------------------------------IA 405
ATI+ +D+ HPAAK LV I
Sbjct: 73 ATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIII 132
Query: 406 K-----SQDA-----EIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL 455
+ A E+ ++ S LL K A T+LSSK + + + + +VV AV +
Sbjct: 133 SGYKKAEEVALQTIQELAQTVSINDTDLLRKIAMTSLSSKAVAGAREYIADIVVKAVTQV 192
Query: 456 DDL------LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALL 509
+L + L+ I I K AGG++ D+ LV G+ K + G PK +N KIAL+
Sbjct: 193 AELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGM---PKRLENAKIALI 249
Query: 510 NIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVAT 569
+ LE++ +AEIR++ + QK +D E ++ EK+DKI A+GA V++ + I +VA
Sbjct: 250 DASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQ 309
Query: 570 QYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
Y A + + R + DL++ +A GG V++ ++++ LG ++ +ER++G ++
Sbjct: 310 SYLAKKGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDK 366
Score = 247 bits (632), Expect = 3e-74
Identities = 62/179 (34%), Positives = 112/179 (62%), Gaps = 3/179 (1%)
Query: 36 KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
+K E + E +P + QK +D E ++ EK+DKI A+GA V++ + I +VA Y A
Sbjct: 255 VEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAK 314
Query: 93 RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK 152
+ + R + DL++ +A GG V++ ++++ LG ++ +ER++G ++ G K
Sbjct: 315 KGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAK 374
Query: 153 NARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
N ++ +I++RGG E+ ++ETER+L DA+ V I++ +AGGGA+E+E++K LR Y+
Sbjct: 375 NPKSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAVEIEIAKKLRKYA 433
Score = 109 bits (276), Expect = 2e-25
Identities = 31/79 (39%), Positives = 50/79 (63%)
Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
PK +N KIAL++ LE++ +AEIR++ + QK +D E ++ EK+DKI A+GA
Sbjct: 237 MPKRLENAKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGAN 296
Query: 298 VVLSKLPIGDVATQYFADR 316
V++ + I +VA Y A +
Sbjct: 297 VIICQKGIDEVAQSYLAKK 315
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f*
Length = 546
Score = 369 bits (951), Expect = e-121
Identities = 72/364 (19%), Positives = 138/364 (37%), Gaps = 68/364 (18%)
Query: 328 ILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATI 387
+ LL E+ + L N+ + + + + T LGP+G K++VD G ++ DG +
Sbjct: 3 LQLLNPKAESLRRDAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVL 62
Query: 388 MKLLDIVHPAAKTLVDIAKSQDAE------------------------------------ 411
+ + I P A + A +QD
Sbjct: 63 LTEMQIQSPTAVLIARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGF 122
Query: 412 ---------------IQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLD 456
I K++ R L + A ++L +K+ + +V DAV+S+
Sbjct: 123 EIARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSVY 182
Query: 457 DL----LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIE 512
D L L+M+ I ++ + +D+ + G+ + P KN + +LN+
Sbjct: 183 DAQADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPD---MPTRVKNAYVLILNVS 239
Query: 513 LELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKI----------HASGAQVVLSKL 562
LE + N+ S ++ K+ +E K + KL KI V++++
Sbjct: 240 LEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQK 299
Query: 563 PIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQI 622
I ++ FA ++ R +++R GG + DL+ +LG + + I
Sbjct: 300 GIDPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETI 359
Query: 623 GSER 626
G E+
Sbjct: 360 GEEK 363
Score = 233 bits (598), Expect = 2e-69
Identities = 41/195 (21%), Positives = 83/195 (42%), Gaps = 13/195 (6%)
Query: 36 KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKI----------HASGAQVVLSKLPI 82
+K E D+ K+ +E K + KL KI V++++ I
Sbjct: 242 YEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGI 301
Query: 83 GDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGS 142
++ FA ++ R +++R GG + DL+ +LG + + IG
Sbjct: 302 DPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGE 361
Query: 143 ERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEME 202
E+F + + ++CTI+++G L +T+ ++ D + V +++ ++ G GA +
Sbjct: 362 EKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIA 421
Query: 203 LSKALRDYSGLGDKV 217
LS+ LR +
Sbjct: 422 LSRYLRSANMNKLGA 436
Score = 101 bits (253), Expect = 1e-22
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKI------ 291
P KN + +LN+ LE + N+ S ++ K+ +E K + KL KI
Sbjct: 224 MPTRVKNAYVLILNVSLEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNE 283
Query: 292 ----HASGAQVVLSKLPIGDVATQYFADR 316
V++++ I ++ FA
Sbjct: 284 VCGMDPDKGFVIINQKGIDPMSLDVFAKH 312
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 529
Score = 367 bits (945), Expect = e-120
Identities = 98/354 (27%), Positives = 160/354 (45%), Gaps = 66/354 (18%)
Query: 336 ENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVH 395
+ S G+ N+ A ++ + V+++LGP G+DK++VD G TI+NDGATI+KLL++ H
Sbjct: 4 DRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 63
Query: 396 PAAKTLVDIAKSQDAE-------------------------------------------- 411
PAAK L ++A QD E
Sbjct: 64 PAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAV 123
Query: 412 ------IQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL------- 458
+ + R L A T++SSK+I FF+ +VVDAV+++
Sbjct: 124 RYISENLIINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPR 183
Query: 459 LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAE 518
P+N I + K G + +S+L++G + G + PK N KIA L+ L+
Sbjct: 184 YPVNSINVLKAHGRSQMESMLINGYALNC---VVGSQGMPKRIVNAKIACLDFSLQKTKM 240
Query: 519 RDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMF 578
+ ++ + E+ ++ E I E++ KI A+GA V+L+ I D+ +YF +
Sbjct: 241 KLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAM 300
Query: 579 CAGRVPEEDLKRTMKACGGAVMTTAHDLND------SVLGTCAVFDERQIGSER 626
RV + DLKR KA G V++T +L S+LG + +I +
Sbjct: 301 AVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDE 354
Score = 241 bits (617), Expect = 3e-72
Identities = 58/185 (31%), Positives = 97/185 (52%), Gaps = 9/185 (4%)
Query: 36 KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
K K + + +P++ ++ E I E++ KI A+GA V+L+ I D+ +YF +
Sbjct: 237 KTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVE 296
Query: 93 RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLND------SVLGTCAVFDERQIGSERFN 146
RV + DLKR KA G V++T +L S+LG + +I +
Sbjct: 297 AGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELI 356
Query: 147 VFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKA 206
+ K + ++I+RG + +E ERSLHDA+ +V+R + + +VV GGGA+E LS
Sbjct: 357 LIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIY 416
Query: 207 LRDYS 211
L +Y+
Sbjct: 417 LENYA 421
Score = 115 bits (290), Expect = 2e-27
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 234 GFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHA 293
G + PK N KIA L+ L+ + ++ + E+ ++ E I E++ KI A
Sbjct: 215 GSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILA 274
Query: 294 SGAQVVLSKLPIGDVATQYFADR 316
+GA V+L+ I D+ +YF +
Sbjct: 275 TGANVILTTGGIDDMCLKYFVEA 297
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h*
Length = 568
Score = 369 bits (949), Expect = e-120
Identities = 75/370 (20%), Positives = 140/370 (37%), Gaps = 64/370 (17%)
Query: 321 QVFRQPQILLLKEGTEN-SQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKST 379
++ + P L K+G + S Q+I +I A + + T++GP G +K+IV+ GK
Sbjct: 4 RLPQNPNAGLFKQGYNSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKII 63
Query: 380 ISNDGATIMKLLDIVHPAAKTLVDIAKSQDAE---------------------------- 411
I+ND AT+++ LDIVHPA K LV + Q +
Sbjct: 64 ITNDAATMLRELDIVHPAVKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLS 123
Query: 412 -----------------------IQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMV 448
+ + + L K +SSK + S++V
Sbjct: 124 AVEIIQGYNMARKFTLKELDEMVVGEITDKNDKNELLKMIKPVISSKKYGSED-ILSELV 182
Query: 449 VDAVMSL---------DDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPK 499
+AV + ++ I + K+ GG+L +S ++ G+ F + G
Sbjct: 183 SEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNRE--PEGHVKSLS 240
Query: 500 TYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVL 559
K K+A+ L++ + L + +E E K + + +I G + ++
Sbjct: 241 EDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIV 300
Query: 560 SKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDE 619
+ +G++A Y + + +L+R + CG + LG
Sbjct: 301 AGAGVGELALHYLNRYGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKT 360
Query: 620 RQIGSERDTL 629
+IG +R T+
Sbjct: 361 MEIGGDRVTV 370
Score = 228 bits (584), Expect = 4e-67
Identities = 39/183 (21%), Positives = 74/183 (40%), Gaps = 7/183 (3%)
Query: 36 KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
E + E E K + + +I G + +++ +G++A Y
Sbjct: 256 IANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGVGELALHYLNR 315
Query: 93 RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFS--G 150
+ + +L+R + CG + LG +IG +R VF
Sbjct: 316 YGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQ 375
Query: 151 CKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHA--VVAGGGAIEMELSKALR 208
+ +RT TII+RG + L++ ER++ D + V+ ++ ++ G GA E+EL +
Sbjct: 376 GEISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRIT 435
Query: 209 DYS 211
Y
Sbjct: 436 KYG 438
Score = 110 bits (277), Expect = 1e-25
Identities = 15/85 (17%), Positives = 33/85 (38%)
Query: 232 PDGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKI 291
P+G K K+A+ L++ + L + +E E K + + +I
Sbjct: 232 PEGHVKSLSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEI 291
Query: 292 HASGAQVVLSKLPIGDVATQYFADR 316
G + +++ +G++A Y
Sbjct: 292 ADMGVECIVAGAGVGELALHYLNRY 316
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b*
Length = 527
Score = 366 bits (941), Expect = e-120
Identities = 89/354 (25%), Positives = 147/354 (41%), Gaps = 59/354 (16%)
Query: 328 ILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGK-STISNDGAT 386
+ + + + + +S AV D V++TLGP+GMDKL+ + ++NDGAT
Sbjct: 3 VQIFGDQVTEERAENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGAT 62
Query: 387 IMKLLDIVHPA--------------------------------AKTLVD--------IAK 406
I+K + + +PA A+ L+D I +
Sbjct: 63 ILKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIE 122
Query: 407 S-------------QDAEIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVM 453
+ A D +R L A T LSSK++ Q K F+++ +A++
Sbjct: 123 GYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLSSKILSQDKDHFAELATNAIL 182
Query: 454 SLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIEL 513
L L I I K+ GG L DS L +G K F QPK +N KI + N L
Sbjct: 183 RLKGSTNLEHIQIIKILGGKLSDSFLDEGFILAKKFG----NNQPKRIENAKILIANTTL 238
Query: 514 EL-KAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYF 572
+ K + + ++DS + ++ AE + + K+ KI G +++ I D Q F
Sbjct: 239 DTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLF 298
Query: 573 ADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
D + E ++R GG V++T + + LG C V +E +G +
Sbjct: 299 TDLGINSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQP 352
Score = 250 bits (642), Expect = 7e-76
Identities = 56/180 (31%), Positives = 90/180 (50%)
Query: 32 KKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFA 91
K K + + + + ++ AE + + K+ KI G +++ I D Q F
Sbjct: 240 TDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFT 299
Query: 92 DRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGC 151
D + E ++R GG V++T + + LG C V +E +G + F FSGC
Sbjct: 300 DLGINSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGC 359
Query: 152 KNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
K CTI++RG +Q L+E ERSLHDA+ ++ +T + V GGG EM +SKA+ +
Sbjct: 360 KAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEA 419
Score = 113 bits (285), Expect = 1e-26
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 236 EMQPKTYKNPKIALLNIELEL-KAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHAS 294
QPK +N KI + N L+ K + + ++DS + ++ AE + + K+ KI
Sbjct: 220 NNQPKRIENAKILIANTTLDTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKF 279
Query: 295 GAQVVLSKLPIGDVATQYFADR 316
G +++ I D Q F D
Sbjct: 280 GINTFINRQLIYDYPEQLFTDL 301
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Length = 513
Score = 362 bits (932), Expect = e-119
Identities = 85/348 (24%), Positives = 148/348 (42%), Gaps = 59/348 (16%)
Query: 334 GTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVD--QNGKSTISNDGATIMKLL 391
G + + + +S+ A+ D V++TLGP+GMDK+++ ++ ++NDGATI+K +
Sbjct: 2 GADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNI 61
Query: 392 DIVHPA--------------------------------AKTLVD-------IAKS----- 407
+ +PA A++L+ I
Sbjct: 62 GVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREAT 121
Query: 408 --------QDAEIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLL 459
A SD ++R L A T LSSKL+ K F+K+ V+AV+ L
Sbjct: 122 KAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSG 181
Query: 460 PLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELEL-KAE 518
L I + K GG+L DS L +G K QPK +N KI + N ++ K +
Sbjct: 182 NLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVN----QPKRIENAKILIANTGMDTDKIK 237
Query: 519 RDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMF 578
+ +R+DS + ++ AE + + EK+++I G +++ I + Q F +
Sbjct: 238 IFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVM 297
Query: 579 CAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
++R GG + +T LG+C + +E IG ++
Sbjct: 298 AIEHADFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDK 345
Score = 253 bits (649), Expect = 4e-77
Identities = 47/180 (26%), Positives = 85/180 (47%)
Query: 32 KKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFA 91
K K + + ++ AE + + EK+++I G +++ I + Q F
Sbjct: 233 TDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFG 292
Query: 92 DRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGC 151
+ ++R GG + +T LG+C + +E IG ++ FSG
Sbjct: 293 AAGVMAIEHADFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGV 352
Query: 152 KNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
CTI++RG +Q L+E ERSLHDA+ ++ +T+++ V GGG EM ++ A+ +
Sbjct: 353 ALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLA 412
Score = 113 bits (286), Expect = 8e-27
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 238 QPKTYKNPKIALLNIELEL-KAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGA 296
QPK +N KI + N ++ K + + +R+DS + ++ AE + + EK+++I G
Sbjct: 215 QPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGI 274
Query: 297 QVVLSKLPIGDVATQYFADR 316
+++ I + Q F
Sbjct: 275 NCFINRQLIYNYPEQLFGAA 294
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e*
Length = 562
Score = 362 bits (932), Expect = e-118
Identities = 89/368 (24%), Positives = 168/368 (45%), Gaps = 61/368 (16%)
Query: 325 QPQILLLKEGTENSQ-GKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISND 383
+P I++ +G + Q G S+I A ++V ++T+LGPRG+DK+++ +G+ TI+ND
Sbjct: 27 RPFIIVKDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITND 86
Query: 384 GATIMKLLDIVHP--------------------------------AAKTLVD-------I 404
GATI+ +++ + A L+ I
Sbjct: 87 GATILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKI 146
Query: 405 AK-----SQDA---------EIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVD 450
A ++ A +I S+ +R L + A T+L SK++ + F++M V+
Sbjct: 147 ANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDRFAEMAVE 206
Query: 451 AVMSLDDL----LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFE---MQPKTYKN 503
AV+++ D + ++I ++ GG++ DS L++GV K F++ + +
Sbjct: 207 AVINVMDKDRKDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEGSDG 266
Query: 504 PKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLP 563
K+A+L E + ++ + SVEEYQK+ E E +D + +GA VV+ +
Sbjct: 267 VKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWG 326
Query: 564 IGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIG 623
D A D+ V ++L+ + G ++ DL+ LGTC+ E++ G
Sbjct: 327 FDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFG 386
Query: 624 SERDTLNR 631
+ +D +
Sbjct: 387 TTKDRMLI 394
Score = 244 bits (625), Expect = 4e-73
Identities = 50/181 (27%), Positives = 90/181 (49%), Gaps = 5/181 (2%)
Query: 36 KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
K + + + +EYQK+ E E +D + +GA VV+ + D A
Sbjct: 278 PPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQ 337
Query: 93 RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGS--ERFNVFSG 150
D+ V ++L+ + G ++ DL+ LGTC+ E++ G+ +R +
Sbjct: 338 NDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQ 397
Query: 151 CKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDY 210
K +T T VRG + ++E ER+LHD++ +VR +++ VV GGGA E+ +S A+ +
Sbjct: 398 SKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSEE 457
Query: 211 S 211
+
Sbjct: 458 A 458
Score = 109 bits (275), Expect = 2e-25
Identities = 20/80 (25%), Positives = 34/80 (42%)
Query: 237 MQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGA 296
+ + K+A+L E + ++ + SVEEYQK+ E E +D + +GA
Sbjct: 259 LPKEGSDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGA 318
Query: 297 QVVLSKLPIGDVATQYFADR 316
VV+ + D A
Sbjct: 319 DVVICQWGFDDEANHLLLQN 338
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 518
Score = 359 bits (925), Expect = e-118
Identities = 89/351 (25%), Positives = 147/351 (41%), Gaps = 63/351 (17%)
Query: 334 GTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDI 393
+ + SNI+A +AV DA+RT+LGP+GMDK+I D G TI+NDGATI+K + +
Sbjct: 3 YQDRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQV 62
Query: 394 VHPAAKTLVDIAKSQDAE------------------------------------------ 411
+HPAA+ LV+++K+QD E
Sbjct: 63 LHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEK 122
Query: 412 -------IQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL-----L 459
+ + R L AAT+L+SK++ Q S M VDAVM + D +
Sbjct: 123 GIEILTDMSRPVELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSV 182
Query: 460 PLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAER 519
L I I K GG ++D LV+G+ + A +G + KI L+ L
Sbjct: 183 DLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSG----ITRVEKAKIGLIQFCLSAPKTD 238
Query: 520 DNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVATQYFAD 574
+ +I + + +V+ E + + +I +G V+L + I D+A +
Sbjct: 239 MDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNK 298
Query: 575 RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSE 625
+ + ED++ K G + +LG+ + +E +
Sbjct: 299 MKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGS 349
Score = 229 bits (587), Expect = 5e-68
Identities = 48/186 (25%), Positives = 91/186 (48%), Gaps = 10/186 (5%)
Query: 36 KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVAT 87
K + + + + + +V+ E + + +I +G V+L + I D+A
Sbjct: 234 APKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLAL 293
Query: 88 QYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQI-GSERFN 146
+ + + ED++ K G + +LG+ + +E + GS +
Sbjct: 294 HFLNKMKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLI 353
Query: 147 VFSGCKN-ARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSK 205
+GC + +T TI+VRG + +EE ERS+HDA+ ++R ++ A++AGGGA E+EL+
Sbjct: 354 KITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELAL 413
Query: 206 ALRDYS 211
L +YS
Sbjct: 414 RLTEYS 419
Score = 101 bits (254), Expect = 7e-23
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
+ KI L+ L + +I + + +V+ E + + +I +G
Sbjct: 216 GITRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCN 275
Query: 298 VVLSKLPI-----GDVATQYFADR 316
V+L + I D+A +
Sbjct: 276 VLLIQKSILRDALSDLALHFLNKM 299
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A
{Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1q2v_A* 1q3s_A* 1q3r_A
Length = 548
Score = 359 bits (923), Expect = e-117
Identities = 105/357 (29%), Positives = 165/357 (46%), Gaps = 58/357 (16%)
Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
+++L EGT+ G+ NI A + + + VRTTLGP+GMDK++VD G ++ND
Sbjct: 6 GQPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDC 65
Query: 385 ATIMKLLDIVHPAAKTLVD---------------------------------------IA 405
ATI+ +D+ HPAAK +V+ I
Sbjct: 66 ATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIT 125
Query: 406 KS-----QDA-----EIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL 455
K + A EI + L K AAT+++ K K +K+ V+AV +
Sbjct: 126 KGYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQV 185
Query: 456 DDL------LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALL 509
+ + L+ I +K AG +E+S LV GV K + PK +N KIAL+
Sbjct: 186 AEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPR---MPKRVENAKIALI 242
Query: 510 NIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVAT 569
N LE+K +A+I + S ++ ++ E K+L + +D I +GA VV + I D+A
Sbjct: 243 NEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQ 302
Query: 570 QYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
Y A + RV + D+++ KA G ++T DL LG V +ER++ E
Sbjct: 303 HYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGEN 359
Score = 246 bits (631), Expect = 4e-74
Identities = 61/179 (34%), Positives = 98/179 (54%), Gaps = 3/179 (1%)
Query: 36 KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
KK E + + PD+ ++ E K+L + +D I +GA VV + I D+A Y A
Sbjct: 248 VKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAK 307
Query: 93 RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK 152
+ RV + D+++ KA G ++T DL LG V +ER++ E GCK
Sbjct: 308 YGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCK 367
Query: 153 NARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
N + TI++RGG E ++E ER+L DA+ +V+ + + AV+ GGA E+EL+ L +Y+
Sbjct: 368 NPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYA 426
Score = 110 bits (277), Expect = 1e-25
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
PK +N KIAL+N LE+K +A+I + S ++ ++ E K+L + +D I +GA
Sbjct: 230 MPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGAN 289
Query: 298 VVLSKLPIGDVATQYFADR 316
VV + I D+A Y A
Sbjct: 290 VVFVQKGIDDLAQHYLAKY 308
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit
arrangement, acetylation, ATP-binding, chaperone,
cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Length = 515
Score = 353 bits (909), Expect = e-115
Identities = 80/354 (22%), Positives = 150/354 (42%), Gaps = 58/354 (16%)
Query: 333 EGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLD 392
+ G L S+I A +AV + ++T+LGP G+DK++VD++G T++NDGATI+ ++D
Sbjct: 1 DRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMD 60
Query: 393 IVHPAAKTLVD---------------------------------------IAKS------ 407
+ H AK +V+ IA
Sbjct: 61 VDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAAR 120
Query: 408 ------QDAEIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL--- 458
+ L + A T L SK+++ +++ V+AV+++ D+
Sbjct: 121 IAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRR 180
Query: 459 -LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKA 517
+ +I ++ GG LED+ L+ GV K F++ PK ++ KIA+L E
Sbjct: 181 DVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQ---MPKQVEDAKIAILTCPFEPPK 237
Query: 518 ERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM 577
+ ++ + SVE+++ + E + E + +I +GA + + + D A D+
Sbjct: 238 PKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDL 297
Query: 578 FCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNR 631
V +++ A GG ++ +L LG + E G+ +D +
Sbjct: 298 PAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLV 351
Score = 241 bits (618), Expect = 1e-72
Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 5/181 (2%)
Query: 36 KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
K + + + ++++ + E + E + +I +GA + + + D A
Sbjct: 235 PPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQ 294
Query: 93 RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGS--ERFNVFSG 150
D+ V +++ A GG ++ +L LG + E G+ ++ V
Sbjct: 295 NDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQ 354
Query: 151 CKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDY 210
CKN+R TI +RGG + +EE +RSLHDA+ ++R IR++ VV GGGA E+ + A+
Sbjct: 355 CKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQE 414
Query: 211 S 211
+
Sbjct: 415 A 415
Score = 109 bits (275), Expect = 2e-25
Identities = 17/79 (21%), Positives = 35/79 (44%)
Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
PK ++ KIA+L E + ++ + SVE+++ + E + E + +I +GA
Sbjct: 217 MPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGAN 276
Query: 298 VVLSKLPIGDVATQYFADR 316
+ + + D A
Sbjct: 277 LAVCQWGFDDEANHLLLQN 295
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 512
Score = 352 bits (907), Expect = e-115
Identities = 69/352 (19%), Positives = 136/352 (38%), Gaps = 61/352 (17%)
Query: 333 EGTENSQGKPQ-LISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLL 391
EG ++ G + + NI AC+ + RT GP GM+K++++ K ++ND ATI++ L
Sbjct: 1 EGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILREL 60
Query: 392 DIVHPAAKTLVDIAKSQDAEI--------------------------------------- 412
++ HPAAK +V + Q+ E+
Sbjct: 61 EVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIAC 120
Query: 413 ------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD--- 457
+ + + T++ SK + F +K++ A +S+
Sbjct: 121 KKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYG-NEVFLAKLIAQACVSIFPDSG 179
Query: 458 LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKA 517
++ I + K+ G + S ++ G+ FKK E + K+ KIA+ + +
Sbjct: 180 HFNVDNIRVCKILGSGVHSSSVLHGMVFKKE-----TEGDVTSVKDAKIAVYSCPFDGMI 234
Query: 518 ERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM 577
+ + S EE E ++ ++ I +GA VV++ + D+A Y ++
Sbjct: 235 TETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNI 294
Query: 578 FCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTL 629
+ DL+R K G + + +G C ++G + +
Sbjct: 295 MLVRLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVV 346
Score = 232 bits (593), Expect = 5e-69
Identities = 40/180 (22%), Positives = 77/180 (42%), Gaps = 4/180 (2%)
Query: 36 KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
E + + +E E ++ ++ I +GA VV++ + D+A Y
Sbjct: 232 GMITETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANK 291
Query: 93 RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK 152
++ + DL+R K G + + +G C ++G + VF K
Sbjct: 292 YNIMLVRLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEK 351
Query: 153 N-ARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
TI++RG + +++ ER++ D + + R+ +V GGGA E+EL+K + Y
Sbjct: 352 EDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYG 411
Score = 108 bits (272), Expect = 4e-25
Identities = 17/82 (20%), Positives = 33/82 (40%)
Query: 235 FEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHAS 294
E + K+ KIA+ + + + + S EE E ++ ++ I +
Sbjct: 211 TEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADT 270
Query: 295 GAQVVLSKLPIGDVATQYFADR 316
GA VV++ + D+A Y
Sbjct: 271 GANVVVTGGRVADMALHYANKY 292
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B
2bbn_B
Length = 590
Score = 350 bits (900), Expect = e-113
Identities = 86/372 (23%), Positives = 157/372 (42%), Gaps = 79/372 (21%)
Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
Q ++ + E + G+ ISNI A +AV D +RT LGP+ M K+++D G ++NDG
Sbjct: 2 QAPVVFMNASQERTTGRQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDG 61
Query: 385 ATIMKLLDIVHPAAKTLVDIAKSQDAEIQKSD--------SGEYRGLLEKCAATALSSKL 436
I++ +D+ HPAAK++++++++QD E+ D +GE +L +C A L K
Sbjct: 62 HAILREIDVAHPAAKSMLELSRTQDEEV--GDGTTTVIILAGE---ILAQC-APYLIEKN 115
Query: 437 IH------------------------------------------------QQKGFFSKMV 448
IH ++
Sbjct: 116 IHPVIIIQALKKALTDALEVIKQVSKPVDVENDAAMKKLIQASIGTKYVIHWSEKMCELA 175
Query: 449 VDAVMSLDDLLP-------------LNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFE 495
+DAV ++ L + ++K+ GG + DS ++ GV K +
Sbjct: 176 LDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHPK-- 233
Query: 496 MQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGA 555
+ +NP++ LL+ LE K I ++ E++ +++ E + + ++I A
Sbjct: 234 -MSRHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRP 292
Query: 556 QVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGT-C 614
+V+++ + D+A Y RV + D R + G ++ DL +S +GT C
Sbjct: 293 TLVITEKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNC 352
Query: 615 AVFDERQIGSER 626
+F IG E
Sbjct: 353 GLFKVEMIGDEY 364
Score = 170 bits (432), Expect = 1e-45
Identities = 40/236 (16%), Positives = 79/236 (33%), Gaps = 60/236 (25%)
Query: 36 KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
KK E + E+ +++ +++ E + + ++I A +V+++ + D+A Y
Sbjct: 252 YKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLK 311
Query: 93 RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGT-CAVFDERQIGSERFNVFSGC 151
RV + D R + G ++ DL +S +GT C +F IG E F+ C
Sbjct: 312 GGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNC 371
Query: 152 KNARTCTIIVRGGAEQFLEET--------------------------------------- 172
K + + E+ +
Sbjct: 372 KEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALGSGHHHHHHHHGSGK 431
Query: 173 ------ERSLHDAIM-----------IVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
D + + R + + ++ GGGA EM +S L + +
Sbjct: 432 ACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKA 487
Score = 110 bits (278), Expect = 1e-25
Identities = 16/79 (20%), Positives = 38/79 (48%)
Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
+ +NP++ LL+ LE K I ++ E++ +++ E + + ++I A
Sbjct: 234 MSRHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPT 293
Query: 298 VVLSKLPIGDVATQYFADR 316
+V+++ + D+A Y
Sbjct: 294 LVITEKGVSDLAQHYLLKG 312
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 347 bits (893), Expect = e-113
Identities = 74/349 (21%), Positives = 148/349 (42%), Gaps = 60/349 (17%)
Query: 335 TENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIV 394
T+ G+ NINA + + D +RT LGP+ M K+++D G ++NDG I++ + +
Sbjct: 2 TKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQ 61
Query: 395 HPA--------------------------------AKTLVD-------IAKS-----QDA 410
HPA A+ ++ + + D
Sbjct: 62 HPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDM 121
Query: 411 -----EIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL-------DDL 458
+I R + +++++K+I + + +DAV ++ ++
Sbjct: 122 ISTLKKISIPVDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEI 181
Query: 459 LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAE 518
++K+ GG +EDS ++ GV K + + KNP+I LL+ LE K
Sbjct: 182 DIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPR---MRRYIKNPRIVLLDSSLEYKKG 238
Query: 519 RDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMF 578
+I + E++ +++ E + + + + I VV+++ I D+A Y ++
Sbjct: 239 ESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANIT 298
Query: 579 CAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCA-VFDERQIGSER 626
RV + D R +ACG +++ +L + +GT A + + ++IG E
Sbjct: 299 AIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDEY 347
Score = 246 bits (630), Expect = 3e-74
Identities = 51/180 (28%), Positives = 98/180 (54%), Gaps = 4/180 (2%)
Query: 36 KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
KK E + + +++ +++ E + + + + I VV+++ I D+A Y
Sbjct: 235 YKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMR 294
Query: 93 RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCA-VFDERQIGSERFNVFSGC 151
++ RV + D R +ACG +++ +L + +GT A + + ++IG E F + C
Sbjct: 295 ANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITEC 354
Query: 152 KNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
K+ + CTI++RG +++ L E ER+L DA+ + R + + +V GGGA EM ++ AL + S
Sbjct: 355 KDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKS 414
Score = 111 bits (280), Expect = 4e-26
Identities = 19/79 (24%), Positives = 37/79 (46%)
Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
+ KNP+I LL+ LE K +I + E++ +++ E + + + + I
Sbjct: 217 MRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPD 276
Query: 298 VVLSKLPIGDVATQYFADR 316
VV+++ I D+A Y
Sbjct: 277 VVITEKGISDLAQHYLMRA 295
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 517
Score = 324 bits (832), Expect = e-104
Identities = 74/353 (20%), Positives = 141/353 (39%), Gaps = 65/353 (18%)
Query: 335 TENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIV 394
E ++ + L NI+A + + D +RT LGP+G K++V G ++ DG ++ + I
Sbjct: 3 AEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQ 62
Query: 395 HPA--------------------------------AKTLVD-------IAK-----SQDA 410
HP A + I + + A
Sbjct: 63 HPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKA 122
Query: 411 -----EIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL---DDLLPLN 462
+++ S + R L A T+L +K+ + ++ VVD+++++ D+ + L
Sbjct: 123 LQFLEQVKVSKEMD-RETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQDEPIDLF 181
Query: 463 MIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNA 522
M+ I ++ + D+ L+ G+ + K ++ I N+ LE + N+
Sbjct: 182 MVEIMEMKHKSETDTSLIRGLVLDHGARHPDM---KKRVEDAYILTCNVSLEYEKTEVNS 238
Query: 523 EIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ---------VVLSKLPIGDVATQYFA 573
S EE +K+V AE K + +++ KI + VV+++ I + A
Sbjct: 239 GFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALA 298
Query: 574 DRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
+ R +++R ACGG + + DLN L A E +G E+
Sbjct: 299 KEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAGVYEYTLGEEK 351
Score = 228 bits (585), Expect = 8e-68
Identities = 47/188 (25%), Positives = 87/188 (46%), Gaps = 12/188 (6%)
Query: 36 KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQ---------VVLSKLPIG 83
+K E + +E +K+V AE K + +++ KI + VV+++ I
Sbjct: 231 YEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGID 290
Query: 84 DVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSE 143
+ A + R +++R ACGG + + DLN L A E +G E
Sbjct: 291 PFSLDALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAGVYEYTLGEE 350
Query: 144 RFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMEL 203
+F C N R+ T++++G + L + + ++ D + V+ I + VV G GA+E+ +
Sbjct: 351 KFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAM 410
Query: 204 SKALRDYS 211
++AL Y
Sbjct: 411 AEALVKYK 418
Score = 98.0 bits (245), Expect = 1e-21
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 239 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ- 297
K ++ I N+ LE + N+ S EE +K+V AE K + +++ KI +
Sbjct: 214 KKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKV 273
Query: 298 --------VVLSKLPIGDVATQYFADR 316
VV+++ I + A
Sbjct: 274 CGDSDKGFVVINQKGIDPFSLDALAKE 300
>3aq1_B Thermosome subunit; group II chaperonin, protein folding,
chaperone; 2.75A {Methanococcoides burtonii}
Length = 500
Score = 292 bits (749), Expect = 6e-92
Identities = 83/313 (26%), Positives = 140/313 (44%), Gaps = 59/313 (18%)
Query: 370 LIVDQNGKSTISNDGATIMKLLDIVHPAA------------------------------- 398
++VD G I+NDGATI+K +DI HPAA
Sbjct: 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSK 60
Query: 399 -KTLVD-------IAK-----SQDA-----EIQKSDSGEYRGLLEKCAATALSSKLIHQQ 440
+ L+ I++ ++ I + S + L K A TA++ K
Sbjct: 61 AEELIMKGVHSTIISEGYRHAAEKCREILETITIAISPDDEAALIKIAGTAITGKGAEAY 120
Query: 441 KGFFSKMVVDAVMSLDD-------LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAG 493
K S + V AV S+ + + L I I+K AGG+++DS L+DG+ K ++
Sbjct: 121 KEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHPN 180
Query: 494 FEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHAS 553
P+ +N KI LL+ +E + ++EI++ S + Q +D E K++ E +K+ AS
Sbjct: 181 M---PEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIAS 237
Query: 554 GAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGT 613
GA VV + I D+A Y ++ RV + DLKR K G ++ + +GT
Sbjct: 238 GANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGT 297
Query: 614 CAVFDERQIGSER 626
+ +E+++ +
Sbjct: 298 AGLVEEKEVRGGK 310
Score = 250 bits (640), Expect = 6e-76
Identities = 54/179 (30%), Positives = 96/179 (53%), Gaps = 3/179 (1%)
Query: 36 KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
+K E + E P + Q +D E K++ E +K+ ASGA VV + I D+A Y
Sbjct: 199 FRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQKGIDDMAQYYIEK 258
Query: 93 RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK 152
++ RV + DLKR K G ++ + +GT + +E+++ + +GC+
Sbjct: 259 AGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRGGKMTYVTGCQ 318
Query: 153 NARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
N++ T+++ GG E ++ + +L+DA+ +V I + VV GGG+ E+ELS L +Y+
Sbjct: 319 NSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVELSLRLSEYA 377
Score = 111 bits (280), Expect = 4e-26
Identities = 26/79 (32%), Positives = 43/79 (54%)
Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
P+ +N KI LL+ +E + ++EI++ S + Q +D E K++ E +K+ ASGA
Sbjct: 181 MPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGAN 240
Query: 298 VVLSKLPIGDVATQYFADR 316
VV + I D+A Y
Sbjct: 241 VVFCQKGIDDMAQYYIEKA 259
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin,
tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Length = 178
Score = 188 bits (480), Expect = 1e-56
Identities = 39/154 (25%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Query: 474 LEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQ 533
+EDS ++ GV K + + KNP+I LL+ LE K +I + E++
Sbjct: 1 MEDSCVLRGVMINKDVTHPR---MRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFT 57
Query: 534 KVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMK 593
+++ E + +++ + I VV+++ I D+A Y ++ RV + D R +
Sbjct: 58 RILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIAR 117
Query: 594 ACGGAVMTTAHDLNDSVLGTCA-VFDERQIGSER 626
ACG +++ +L + +GT A + + ++IG E
Sbjct: 118 ACGARIVSRPEELREDDVGTGAGLLEIKKIGDEY 151
Score = 170 bits (432), Expect = 8e-50
Identities = 33/140 (23%), Positives = 70/140 (50%), Gaps = 4/140 (2%)
Query: 36 KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
KK E + + +++ +++ E + +++ + I VV+++ I D+A Y
Sbjct: 39 YKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMR 98
Query: 93 RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCA-VFDERQIGSERFNVFSGC 151
++ RV + D R +ACG +++ +L + +GT A + + ++IG E F + C
Sbjct: 99 ANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDC 158
Query: 152 KNARTCTIIVRGGAEQFLEE 171
K+ + CTI++RG +
Sbjct: 159 KDPKACTILLRGASHHHHHH 178
Score = 108 bits (273), Expect = 1e-27
Identities = 19/79 (24%), Positives = 38/79 (48%)
Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
+ KNP+I LL+ LE K +I + E++ +++ E + +++ + I
Sbjct: 21 MRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPD 80
Query: 298 VVLSKLPIGDVATQYFADR 316
VV+++ I D+A Y
Sbjct: 81 VVITEKGISDLAQHYLMRA 99
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI
ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP:
c.8.5.2 PDB: 1asx_A
Length = 159
Score = 177 bits (451), Expect = 9e-53
Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 3/147 (2%)
Query: 480 VDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAE 539
+ G+ K ++ P KN KIAL++ LE+K A++++ + Q ++ E
Sbjct: 1 MSGIVIDKEKVHSK---MPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQE 57
Query: 540 WKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAV 599
+ ++KI SGA VVL + I DVA Y A ++ RV + D+++ KA G +
Sbjct: 58 TNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKI 117
Query: 600 MTTAHDLNDSVLGTCAVFDERQIGSER 626
+T DL SVLG +ER+IG +R
Sbjct: 118 VTDLDDLTPSVLGEAETVEERKIGDDR 144
Score = 142 bits (360), Expect = 7e-40
Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 36 KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
KK E E + +P + Q ++ E + ++KI SGA VVL + I DVA Y A
Sbjct: 33 IKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAK 92
Query: 93 RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK 152
++ RV + D+++ KA G ++T DL SVLG +ER+IG +R GCK
Sbjct: 93 EGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCK 152
Query: 153 N 153
N
Sbjct: 153 N 153
Score = 106 bits (266), Expect = 7e-27
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
P KN KIAL++ LE+K A++++ + Q ++ E + ++KI SGA
Sbjct: 15 MPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGAN 74
Query: 298 VVLSKLPIGDVATQYFADR 316
VVL + I DVA Y A
Sbjct: 75 VVLCQKGIDDVAQHYLAKE 93
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 2e-09
Identities = 64/333 (19%), Positives = 109/333 (32%), Gaps = 124/333 (37%)
Query: 201 MEL---SKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYKNPK-IALLNIELEL 256
M+L SKA +D + ++ DN H GF + NP + + +
Sbjct: 1633 MDLYKTSKAAQD---VWNRA------DN--HFKDTYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 257 KAERDN-AEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 315
K R+N + + +++ + + + +K + E + +LS ATQ+
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS-------ATQF--- 1731
Query: 316 RVYTSQVFRQPQILL--------LKE---------------GTENSQGKPQLISNINACQ 352
T QP + L LK G E + L A
Sbjct: 1732 ---T-----QPALTLMEKAAFEDLKSKGLIPADATFAGHSLG-EYAA----L-----ASL 1773
Query: 353 AVV----DAVRTTLGPRGMDKLI-----VDQNGKSTIS----NDGATIMKLLDIVHPAAK 399
A V V + RG + D+ G+S N G A +
Sbjct: 1774 ADVMSIESLVEV-VFYRG--MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ---EALQ 1827
Query: 400 TLVDIAKSQDAEIQKSDSGEYRGLLEKCAATALSSKLI------HQQKGFFSKMVVDA-- 451
+V+ + K +G L+E I +QQ V A
Sbjct: 1828 YVVE-------RVGK-RTGW---LVE-----------IVNYNVENQQ-------YVAAGD 1858
Query: 452 VMSLDDLLP-LNMIGIKKVAGGALEDSLLVDGV 483
+ +LD + LN I ++K+ L+ SL ++ V
Sbjct: 1859 LRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 53.5 bits (128), Expect = 2e-07
Identities = 90/574 (15%), Positives = 160/574 (27%), Gaps = 224/574 (39%)
Query: 40 EEEEEEEPDEYQKVVDA-----EWKILYEKLDKIHASGAQVVLSKLP---------IGDV 85
E + ++ +V++ E L D IHA + +KL ++
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENCYLEGN-D-IHA-----LAAKLLQENDTTLVKTKEL 122
Query: 86 ATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER- 144
Y R + S A+F G+ +
Sbjct: 123 IKNYITAR------------------IMAKRPFDKKSN---S-----ALFRAVGEGNAQL 156
Query: 145 FNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDA-IMIVRRTIRNHAVVAGGGAIEMEL 203
+F G +G + + EE R L+ ++V I+ A EL
Sbjct: 157 VAIFGG-----------QGNTDDYFEEL-RDLYQTYHVLVGDLIKFSA------ETLSEL 198
Query: 204 SKALRD----YS-GLGDKVR-TGHPS---DNSFHAISPDGFEMQPKTYKNPKIALL---N 251
+ D ++ GL + + +PS D + P P I ++ +
Sbjct: 199 IRTTLDAEKVFTQGL-NILEWLENPSNTPDKDYLLSIPISC---------PLIGVIQLAH 248
Query: 252 IELELKA-ERDNAEIRLDSVE----EYQKVVDA-------EWKILYEKLDKIHASGAQVV 299
+ K E+R ++ Q +V A W+ + + K A V
Sbjct: 249 YVVTAKLLGFTPGELR-SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK-----AITV 302
Query: 300 LSKLPIGDVATQYFADRVYTSQVFRQPQILLLKEGTENSQGKP------------QL--- 344
L IG + + P IL ++ EN++G P Q+
Sbjct: 303 LFF--IGVRCYEAY------PNTSLPPSIL--EDSLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 345 ---------------ISNINACQAVVDAVRTTLGP----RGMDKLI--------VDQNG- 376
IS +N + +V + GP G++ + +DQ+
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVS-----GPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 377 -----KSTISNDGATIMKLLDI---VH-----PAAKTLVDIAKSQDAEIQKSD------- 416
K SN + L + H PA+ + + D
Sbjct: 408 PFSERKLKFSN------RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 417 ----------SGEYRGLLEKCAAT-------ALSSKLIHQQKGFFSKMVVD----AVMSL 455
SG + C K H ++D L
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH---------ILDFGPGGASGL 512
Query: 456 DDLLPLNM--IGIKKVAGGALEDSLLVDGVSFKK 487
L N G++ + G L+ + D FK+
Sbjct: 513 GVLTHRNKDGTGVRVIVAGTLDIN-PDDDYGFKQ 545
Score = 46.2 bits (109), Expect = 3e-05
Identities = 37/240 (15%), Positives = 66/240 (27%), Gaps = 72/240 (30%)
Query: 409 DAEIQKSDSGEYRGLLEKC----AATALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMI 464
+ ++ S G++ +L C L IH L ++
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH-----------ALAAKLLQENDTTLV 117
Query: 465 GIKKV------AGGAL-------EDSLLVDGVSFKKTFAYAGF-----------EMQP-- 498
K++ A +S L V A F E++
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 499 KTYKNPKIALLNIELELKAERDNAEIRLDSVEE--YQKVVD-AEWKILYEKLDKIHASGA 555
+TY + L ++ AE + IR E + + ++ EW L+ +
Sbjct: 178 QTYH-VLVGDL---IKFSAETLSELIRTTLDAEKVFTQGLNILEW------LENPSNTPD 227
Query: 556 QVVLSKLP-----IGDVATQ---YFADRDMFC--AGRVPEE--DLKRTMKACGGAVMTTA 603
+ L +P IG Q Y G P E + ++T
Sbjct: 228 KDYLLSIPISCPLIG--VIQLAHYVV----TAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Score = 43.9 bits (103), Expect = 2e-04
Identities = 79/458 (17%), Positives = 134/458 (29%), Gaps = 178/458 (38%)
Query: 226 SFHAISP---DGFEM--QPKTYKNPKIALLNIELELK-----AERDNAEIRLDSVEEYQK 275
F+ I P +GF +P T EL K + + V ++ +
Sbjct: 36 QFNKILPEPTEGFAADDEPTT---------PAELVGKFLGYVSS----LVEPSKVGQFDQ 82
Query: 276 VVDA-----EWKILYEKLDKIHASGAQVVLSKLP---------IGDVATQYFADRVYTSQ 321
V++ E L D IHA + +KL ++ Y R+ +
Sbjct: 83 VLNLCLTEFENCYLEGN-D-IHA-----LAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 322 VF-RQPQILLLKEGTENS---------QGKPQLISNINACQAVVDAVRTTLGPRGMDKLI 371
F ++ L + E + QG N + ++L
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQG------NTDDY---------------FEEL- 173
Query: 372 VDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEIQKSDSGEYRGL-----LEK 426
+ ++ D++ +A+TL ++ ++ ++ +GL LE
Sbjct: 174 ------RDLYQTYHVLVG--DLIKFSAETLSELIRTT----LDAEKVFTQGLNILEWLEN 221
Query: 427 CAAT---------ALSSKLI--HQQKGFFSKMVVDAVMSLDDLLPLNMI----GIKKVAG 471
+ T +S LI Q + VV A + P + G +
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQ----LAHYVVTAKLL--GFTPGELRSYLKGATGHSQ 275
Query: 472 G-------ALEDSLLVDGVSFKKTFA-------YAGFEMQ---PKTYKNPKIALLNIELE 514
G A DS SF + + G P T P I
Sbjct: 276 GLVTAVAIAETDS----WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI-------- 323
Query: 515 LKAERDNAE--------IRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGD 566
L+ +N E I + E+ Q V+ K + +G QV +S L G
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVN--------KTNSHLPAGKQVEIS-LVNG- 373
Query: 567 VATQYFADRDMF-CAGRVPEEDLK------RTMKACGG 597
+G P + L R KA G
Sbjct: 374 --------AKNLVVSG--PPQSLYGLNLTLRKAKAPSG 401
Score = 30.8 bits (69), Expect = 2.0
Identities = 32/151 (21%), Positives = 48/151 (31%), Gaps = 61/151 (40%)
Query: 485 FKKTFAYAGFEMQPKTYKNPK-IALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKIL 543
FK T+ GF + NP + + + K R+N S ++ +VD K+
Sbjct: 1653 FKDTY---GFSILDIVINNPVNLTIHFGGEKGKRIREN-----YSAMIFETIVDG--KLK 1702
Query: 544 YEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRT------------ 591
EK+ K I + +T Y F R + L T
Sbjct: 1703 TEKIFK-------------EINEHSTSY-----TF---RSEKGLLSATQFTQPALTLMEK 1741
Query: 592 -----MKACG----GAVMTTA-HDLNDSVLG 612
+K+ G A A H S LG
Sbjct: 1742 AAFEDLKSKGLIPADATF--AGH----S-LG 1765
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 9e-08
Identities = 85/623 (13%), Positives = 175/623 (28%), Gaps = 192/623 (30%)
Query: 36 KKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDV-ATQYFADRD 94
K+E + D + + ++V + + +V Y
Sbjct: 47 SKEEIDHIIMSKDAVSGT--------LRLFWTLLSKQEEMV--QKFVEEVLRINY----- 91
Query: 95 MFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNA 154
F + E + +M + D + VF + + R
Sbjct: 92 KFLMSPIKTEQRQPSMM------TRMYIEQRDRLYNDNQVFAKYNV--SR---------- 133
Query: 155 RTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAG-GG------AIEMELSKAL 207
+ L A++ +R + ++ G G A++
Sbjct: 134 ---------------LQPYLKLRQALLELRPA--KNVLIDGVLGSGKTWVALD-----VC 171
Query: 208 RDYS---GLGDKV------RTGHPSD------NSFHAISPDGFEMQPKTYKNPKIALLNI 252
Y + K+ P + I P+ + + N K+ + +I
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN-WTSRSDHSSNIKLRIHSI 230
Query: 253 ELELK---AERD--NAEIRLDSVEEYQKVVDA---EWKILYEKLDKIHASGAQVVLSKLP 304
+ EL+ + N + L +V+ K +A KIL K +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQN-AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 305 IGDVATQYFADRVYTSQVFRQPQILLLKEGT---ENSQGKPQLISNINACQAVVDAVRTT 361
D + + + L + E P+ +S I
Sbjct: 290 SLDHHSMTLTPD-EVKSLLLK--YLDCRPQDLPREVLTTNPRRLSIIAE----------- 335
Query: 362 LGPRGMDKLIVDQNGKSTISN-DGATIMKLLDIVHPAAKTLVDIAKSQDAEIQKSDSGEY 420
++G +T N KL I+ ++ + + EY
Sbjct: 336 ----------SIRDGLATWDNWKHVNCDKLTTII--------------ESSLNVLEPAEY 371
Query: 421 RGLLEKCA----ATALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALED 476
R + ++ + + + + L+ + ++ VM + + L K
Sbjct: 372 RKMFDRLSVFPPSAHIPTILL---SLIWFDVIKSDVMVVVNKL------HKY-------- 414
Query: 477 SLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDN-AEIRLDSVEEYQKV 535
SL+ E QPK I++ +I LELK + +N + V+ Y
Sbjct: 415 SLV---------------EKQPKEST---ISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 536 VDAE-WKILYEKLDK-----I--HASGAQVVLSKLPIGDVATQYFAD-RDMFCAGRVPEE 586
+ ++ LD+ I H + + R +F R E+
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIE-----------HPERMTLFRMVFLDFRFLEQ 505
Query: 587 DLKRTMKACG--GAVMTTAHDLN 607
++ A G+++ T L
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLK 528
Score = 39.5 bits (91), Expect = 0.004
Identities = 50/335 (14%), Positives = 101/335 (30%), Gaps = 98/335 (29%)
Query: 12 FCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHAS 71
E +R K K E EP EY+K ++++L
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK--------MFDRL------ 378
Query: 72 GAQVVL---SKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMT-TAHDLNDS 127
V + +P + + + D V + K ++ T + +
Sbjct: 379 ---SVFPPSAHIPT-ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 128 VLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIM---IVR 184
+ E E +LH +I+ +
Sbjct: 435 LKVKL--------------------------------------ENEYALHRSIVDHYNIP 456
Query: 185 RTIRNHAVVAGGGAIEMELSKALRD---YSGLGDKVRTGHPSD--NSFHAISPD-GFEMQ 238
+T + +L D YS +G ++ + F + D F ++
Sbjct: 457 KTFDSD-----------DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF-LE 504
Query: 239 PK-----TYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHA 293
K T N ++LN +LK + I D+ +Y+++V+A LD +
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPY--IC-DNDPKYERLVNA-------ILDFLPK 554
Query: 294 SGAQVVLSK-LPIGDVATQYFADRVYTSQVFRQPQ 327
++ SK + +A + ++ + +Q Q
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAIF-EEAHKQVQ 588
Score = 36.8 bits (84), Expect = 0.027
Identities = 37/198 (18%), Positives = 66/198 (33%), Gaps = 34/198 (17%)
Query: 240 KTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVV 299
K K I++ +I LELK + +N E L ++ +VD Y +
Sbjct: 419 KQPKESTISIPSIYLELKVKLEN-EYAL-----HRSIVDH-----YNIPKTFDSDD---- 463
Query: 300 LSKLPIGDVATQYFADRVYTSQVFRQPQILLLKEGTENSQGKPQLISNINACQAVVDAVR 359
L + D QYF Y+ L E E + + + +
Sbjct: 464 LIPPYL-D---QYF----YSHIGHH----LKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 360 TTLGPRG--MDKLIVDQNGKSTIS-NDGATIMKLLDIVH--PAAKTLVDIAKSQDAEIQK 414
T G ++ L + K I ND + I+ P + + +K D ++
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL-LRI 570
Query: 415 SDSGEYRGLLEKCAATAL 432
+ E + E+ A +
Sbjct: 571 ALMAEDEAIFEE-AHKQV 587
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 46.7 bits (110), Expect = 4e-06
Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILY-EKLDKIHAS 71
E +RK +++++K+ ++ K ++E E+ + D EW E+++K +
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDL------EEWNQRQSEQVEKNKIN 137
Score = 40.9 bits (95), Expect = 4e-04
Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 14 EELRKKKKK------KKKKKKKKKKKKKKKKEEEEEEEEPDE 49
+E R+K KK +++ ++ +K K + ++ ++PD
Sbjct: 110 QEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151
Score = 28.6 bits (63), Expect = 4.3
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 253 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILY-EKLDKIHAS 294
EL+ ++ E R E+ +K ++ EW E+++K +
Sbjct: 100 ELDAASKVMEQEWR----EKAKKDLE-EWNQRQSEQVEKNKIN 137
Score = 28.6 bits (63), Expect = 4.3
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILY-EKLDKIHAS 553
EL+ ++ E R E+ +K ++ EW E+++K +
Sbjct: 100 ELDAASKVMEQEWR----EKAKKDLE-EWNQRQSEQVEKNKIN 137
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 37.4 bits (87), Expect = 0.012
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 12 FCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQ 51
F + K+ +K+++ ++K ++ K +E+ E+E E Q
Sbjct: 301 FRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 37.2 bits (87), Expect = 0.019
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASG 72
K KKK + K+K+K E ++E E +++Q V L +K G
Sbjct: 21 DMAAKMSKKKAGRGGGKRKEKLENMKKEMEINDHQLSVAE----LEQKYQTSATKG 72
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 35.9 bits (82), Expect = 0.027
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKI 60
KK K ++KKKK+ K K K++ + E D V + + +
Sbjct: 82 PKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNEDGDV 125
Score = 33.2 bits (75), Expect = 0.18
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
R ++KK+ K+ K KK K +E+++++
Sbjct: 66 RPPPRQKKQAPKQPPKPKKPKPQEKKKKQPA 96
Score = 33.2 bits (75), Expect = 0.20
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
+ ++KK+ K+ K KK K +E+++++P +
Sbjct: 65 PRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAK 97
Score = 32.9 bits (74), Expect = 0.27
Identities = 13/67 (19%), Positives = 30/67 (44%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVL 77
++KK+ K+ K KK K +E+++++ + K K+ ++L + V+
Sbjct: 68 PPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNEDGDVIG 127
Query: 78 SKLPIGD 84
L +
Sbjct: 128 HALAMEG 134
Score = 32.5 bits (73), Expect = 0.37
Identities = 7/31 (22%), Positives = 19/31 (61%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
++KK+ K+ K KK K +++++++ +
Sbjct: 68 PPRQKKQAPKQPPKPKKPKPQEKKKKQPAKT 98
Score = 32.1 bits (72), Expect = 0.49
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYE 63
+KK+ K+ K KK K ++KKK++ + + + + E L++
Sbjct: 71 QKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFD 117
Score = 31.3 bits (70), Expect = 0.83
Identities = 7/36 (19%), Positives = 19/36 (52%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
+ + ++KK+ K+ K KK + +E+++ +
Sbjct: 63 PRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKT 98
Score = 30.5 bits (68), Expect = 1.3
Identities = 4/36 (11%), Positives = 19/36 (52%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
R + + + ++KK+ K+ + ++ + + + ++
Sbjct: 59 RPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQ 94
Score = 30.5 bits (68), Expect = 1.6
Identities = 7/36 (19%), Positives = 19/36 (52%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
+ + ++KK+ K+ K K+ + +E++ + K
Sbjct: 62 NPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAK 97
Score = 29.8 bits (66), Expect = 2.7
Identities = 6/36 (16%), Positives = 18/36 (50%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
+ + + ++KK+ K+ K ++ + +E + Q
Sbjct: 60 PQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQP 95
Score = 29.0 bits (64), Expect = 4.2
Identities = 6/36 (16%), Positives = 19/36 (52%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
+ + + + ++KK+ K+ + ++ +P E +K
Sbjct: 57 ATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKK 92
Score = 28.6 bits (63), Expect = 5.1
Identities = 5/36 (13%), Positives = 18/36 (50%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
+ + + ++KK+ K+ K ++ + +E+ +
Sbjct: 61 QNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPA 96
Score = 27.9 bits (61), Expect = 9.6
Identities = 4/36 (11%), Positives = 19/36 (52%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
+ + + + ++KK+ K+ + ++ + ++ +K
Sbjct: 58 TRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKK 93
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A
{Mycobacterium tuberculosis} PDB: 1sjp_A
Length = 546
Score = 36.4 bits (85), Expect = 0.032
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 356 DAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMK 389
DAV+ TLGP+G + ++ + G TI+NDG +I K
Sbjct: 24 DAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAK 57
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1
Length = 545
Score = 36.0 bits (84), Expect = 0.033
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 356 DAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMK 389
DAV+ TLGP+G + +I G I+ DG ++ K
Sbjct: 25 DAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAK 58
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA,
isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo
sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A*
1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A*
1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 36.3 bits (83), Expect = 0.036
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 11/51 (21%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEE------EEEEPDEYQKVVDAEWKIL 61
+ K K K KK + KKKK K+EEE EEE E K WK L
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIK-----WKFL 46
Score = 33.2 bits (75), Expect = 0.26
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 12 FCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
F + + K + + +K+ K++K K KEE E+ +
Sbjct: 128 FTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKE 163
Score = 29.3 bits (65), Expect = 4.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 22 KKKKKKKKKKKKKKKKKEEEEEEEEPDEY 50
K + + +K+ K++K K +EE E+ EY
Sbjct: 136 KAQTEARKQMSKEEKLKIKEENEKLLKEY 164
Score = 28.6 bits (63), Expect = 8.1
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 10 AHFCEELRKKKKKKKKKKKKKKKKKKKKKEE 40
+F + +K+ K++K K K++ +K +E
Sbjct: 133 QYFKAQTEARKQMSKEEKLKIKEENEKLLKE 163
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone;
HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1
c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A
1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A
3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A
3cau_A ...
Length = 547
Score = 36.0 bits (84), Expect = 0.037
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 356 DAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMK 389
DAV+ TLGP+G + ++ G TI+ DG ++ +
Sbjct: 24 DAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAR 57
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding,
ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Length = 543
Score = 36.0 bits (84), Expect = 0.038
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 356 DAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMK 389
+AV+ TLGPRG + ++ + G TI+ DG T+ K
Sbjct: 24 NAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAK 57
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 36.2 bits (84), Expect = 0.040
Identities = 11/59 (18%), Positives = 23/59 (38%)
Query: 13 CEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHAS 71
E+LR ++ + +++ K + +EE + + E K + E DK
Sbjct: 962 TEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020
Score = 33.5 bits (77), Expect = 0.23
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
+E + +K + + +K + + E +E K L E++ K
Sbjct: 942 KEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAK 995
Score = 32.0 bits (73), Expect = 0.76
Identities = 10/54 (18%), Positives = 22/54 (40%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
+ + KK + K + ++K E+ +E + E ++ + EKL
Sbjct: 914 RSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRS 967
Score = 31.2 bits (71), Expect = 1.4
Identities = 11/59 (18%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEE-----EPDEYQKVVDAEWKILYEKLDK 67
+ + +KK ++ K K + ++ E +E+ E +E + + + K + E ++K
Sbjct: 1001 HQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEK 1059
>3rrc_A Duffy receptor; duffy binding like, receptor recognition, duffy
antigen RECE chemokines, cell invasion; HET: EDO; 1.95A
{Plasmodium vivax} PDB: 2c6j_A
Length = 317
Score = 35.6 bits (82), Expect = 0.042
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEE-EEEPDEYQKVVDAEWKILYEKLDK 67
+ EL + +K K+K K KK + + Y + + K ++ L
Sbjct: 191 DYVSELPTEVQKLKEKCDGKINYTDKKVCKVPPCQNACKSYDQWIT-RKKNQWDVLSN 247
Score = 28.7 bits (64), Expect = 5.5
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
+ + + +KK + K K +K + P + K
Sbjct: 230 SYDQWITRKKNQWDVLSNKFISVKNAEKVQTAGIVTPYDILK 271
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large
ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila}
PDB: 4a19_E 4a1b_E 4a1d_E
Length = 191
Score = 34.6 bits (79), Expect = 0.044
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
R+K +K K K + +++KK+E E + + Q+ VD
Sbjct: 119 REKARKNHKNLFKAELTEEQKKKETERKNARKQDQQAVDTP 159
Score = 30.4 bits (68), Expect = 1.2
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 27 KKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
++K +K K + E EE + + K + +D
Sbjct: 118 GREKARKNHKNLFKAELTEEQKKKETERKNARKQDQQAVDT 158
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 35.5 bits (82), Expect = 0.047
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
+K +KKKKKK K + E EE E D
Sbjct: 367 SSASRKTQKKKKKKASKTAENATSGETLEENEAGD 401
Score = 31.7 bits (72), Expect = 0.85
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
L+ +K +KKKKKK K + E E +E
Sbjct: 365 LQSSASRKTQKKKKKKASKTAENATSGETLEENE 398
Score = 31.3 bits (71), Expect = 1.0
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
EL+ + +K +KKKKKK K E
Sbjct: 359 AELKALLQSSASRKTQKKKKKKASKTAENATSGETL 394
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA
binding, signal recognition particle (SRP), translation
regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1
PDB: 1e8o_A* 1e8s_A 1ry1_C*
Length = 232
Score = 35.0 bits (80), Expect = 0.055
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 4 YKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
Y RA+ + L+K+ KK K KK K + ++K EE++
Sbjct: 102 YSNLLRANM-DGLKKRDKKNKSKKSKPAQGGEQKLISEEDDSAGS 145
Score = 29.6 bits (66), Expect = 2.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
R KK K KK K + ++K EE++ P
Sbjct: 116 RDKKNKSKKSKPAQGGEQKLISEEDDSAGSP 146
Score = 28.8 bits (64), Expect = 4.6
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 7 QFRAHFCEELRKK----KKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVV 54
+F+ + LR KK+ KK K KK K + +++ EE+ +
Sbjct: 97 KFQMAYSNLLRANMDGLKKRDKKNKSKKSKPAQGGEQKLISEEDDSAGSPMP 148
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 34.9 bits (80), Expect = 0.079
Identities = 7/35 (20%), Positives = 24/35 (68%)
Query: 12 FCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
F + + + K++ + +KKK++++++ + E + +E+
Sbjct: 384 FLQAVSEAKQENENMRKKKEEEERRARMEAQLKEQ 418
Score = 31.4 bits (71), Expect = 0.92
Identities = 7/37 (18%), Positives = 21/37 (56%)
Query: 13 CEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
+E +KKK++++++ + + + K++ E E +
Sbjct: 392 KQENENMRKKKEEEERRARMEAQLKEQRERERKMRKA 428
Score = 30.2 bits (68), Expect = 2.3
Identities = 10/52 (19%), Positives = 25/52 (48%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKL 65
E +KKK++++++ + + + K++ E E + + E+ L L
Sbjct: 394 ENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDDLVSAL 445
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P;
2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Length = 627
Score = 34.7 bits (79), Expect = 0.10
Identities = 30/180 (16%), Positives = 56/180 (31%), Gaps = 24/180 (13%)
Query: 6 GQFRAHFCEELRKKKKKKKKKKKKKKKKKKK--KKEEEEEEEEPDEYQKVVDAEWKILYE 63
G+ F +K K + E + P YQ ++ A Y
Sbjct: 464 GELNQQFLAATNQKHSTVKLIDDASVSRLATIFDPLLPEGKLSPAHYQHILSA-----YH 518
Query: 64 KLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHD 123
D A+ + + +Y + +F E D ++ A+M A +
Sbjct: 519 LTDATPQKQAETLFC---LSTAFARY-SSSAIFGT----EHDSPPALRGYAEALMQKAWE 570
Query: 124 LNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIV 183
L+ ++ + F E + F G A TCT +V A+ + + +
Sbjct: 571 LSPAIFPSSEQFTEWS------DRFHGLHGAFTCTSVV---ADSMQRHARKYFPSVLSSI 621
>3vuu_A Erythrocyte membrane protein, putative; duffy binding-like domain,
erythrocyte binding, merozoite SU malaria, cell
adhesion; 2.09A {Plasmodium falciparum}
Length = 305
Score = 34.0 bits (78), Expect = 0.11
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 8/65 (12%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEP-----DEYQKVVD---AEWKILY 62
+ CEE K K K+ + + E E +Y++ + EW
Sbjct: 201 YVCEESEKNMNTLKAVCFPKQPRTEANPALTVHENEMCSSTLKKYEEWYNKRKTEWTEQS 260
Query: 63 EKLDK 67
K +
Sbjct: 261 IKYNN 265
Score = 28.3 bits (63), Expect = 7.4
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 13 CEELRKKKKKKKK--KKKKKKKKKKKKKEEEEEEEEPDEYQK 52
++ + K+K ++ K K + + P EY
Sbjct: 242 LKKYEEWYNKRKTEWTEQSIKYNNDKINYTDIKTLSPSEYLI 283
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 34.4 bits (78), Expect = 0.11
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 13 CEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
E K K++ K +K K KK + ++ +
Sbjct: 347 AAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKA 391
Score = 32.9 bits (74), Expect = 0.32
Identities = 8/62 (12%), Positives = 22/62 (35%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGA 73
+ + K K++ K +K K ++ + + K + ++ A G
Sbjct: 344 AKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIAQGQ 403
Query: 74 QV 75
++
Sbjct: 404 EI 405
Score = 28.6 bits (63), Expect = 6.8
Identities = 8/54 (14%), Positives = 20/54 (37%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHA 70
+ KK + K K++ K +K + ++ + + + K + A
Sbjct: 343 QAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDA 396
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 33.7 bits (77), Expect = 0.11
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
+ +K++KK+ ++KK+ + E E+ EE
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 32.6 bits (74), Expect = 0.29
Identities = 8/29 (27%), Positives = 21/29 (72%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
+ +K++KK+ ++KK+ + ++E+ EE+
Sbjct: 101 FQLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 31.8 bits (72), Expect = 0.55
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
+ +K++KK+ ++KK+ + E E+ EE+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 30.6 bits (69), Expect = 1.3
Identities = 8/28 (28%), Positives = 20/28 (71%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEE 45
+ +K++KK+ ++KK+ + + E+ EE+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 30.3 bits (68), Expect = 1.4
Identities = 7/30 (23%), Positives = 21/30 (70%)
Query: 12 FCEELRKKKKKKKKKKKKKKKKKKKKKEEE 41
+ + +++KK+ ++KK+ + +++K EE+
Sbjct: 100 YFQLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 29.9 bits (67), Expect = 2.2
Identities = 9/34 (26%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 9 RAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEE 42
+F + K++KK+ ++KK+ + +++K EE+
Sbjct: 98 FDYFQLQ--KEQKKQLTSQEKKQIRLEREKFEED 129
Score = 29.9 bits (67), Expect = 2.2
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 22 KKKKKKKKKKKKKKKKKEEEEEEEEPDEY 50
+ +K++KK+ ++KK+ E E+ ++Y
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDY 130
>2wau_A VAR2CSA, erythrocyte membrane protein 1 (pfemp1); chondroitin
sulphate A, membrane protein DBL, malaria; 3.00A
{Plasmodium falciparum}
Length = 302
Score = 34.0 bits (78), Expect = 0.12
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEE-EEEPDEYQKVVDAEWKILYEKLDK 67
+FC + + + K +++E E Y + K Y+ L+
Sbjct: 186 NFCTKRNELYENMVTACNSAKCNTSNGSVDKKECTEACKNYSNFIL-IKKKEYQSLNS 242
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 32.3 bits (74), Expect = 0.12
Identities = 4/31 (12%), Positives = 14/31 (45%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
L++ + + K+ +K+E ++ +
Sbjct: 79 LKEVVPEGYEMKRVGDYYVFEKRESKKSKGG 109
Score = 31.1 bits (71), Expect = 0.25
Identities = 4/31 (12%), Positives = 13/31 (41%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
K+ + + K+ ++ E ++ + E
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 30.8 bits (70), Expect = 0.36
Identities = 3/30 (10%), Positives = 12/30 (40%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
+ + K+ +K++ ++ + E
Sbjct: 81 EVVPEGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 30.8 bits (70), Expect = 0.36
Identities = 4/31 (12%), Positives = 13/31 (41%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
K+ + + K+ +K E ++ + +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 30.8 bits (70), Expect = 0.41
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEE 42
+ K+ +K++ KK + E
Sbjct: 83 VPEGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 29.6 bits (67), Expect = 0.88
Identities = 5/31 (16%), Positives = 15/31 (48%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
+E+ + + K+ +K++ K+ + E
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 27.7 bits (62), Expect = 4.5
Identities = 4/32 (12%), Positives = 12/32 (37%)
Query: 21 KKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
K+ + + K+ E+ E ++ +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 26.9 bits (60), Expect = 8.2
Identities = 5/34 (14%), Positives = 10/34 (29%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
L K+ + + K+ E+ E
Sbjct: 73 LWNHGILKEVVPEGYEMKRVGDYYVFEKRESKKS 106
>3vuv_A Erythrocyte membrane protein, putative; duffy binding-like domain,
erythrocyte binding, merozoite SU malaria, cell
adhesion; 2.11A {Plasmodium falciparum}
Length = 339
Score = 34.1 bits (78), Expect = 0.12
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 8/65 (12%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEP-----DEYQKVVD---AEWKILY 62
+ CEE K K K+ + + E E +Y++ + EW
Sbjct: 235 YVCEESEKNMNTLKAVCFPKQPRTEANPALTVHENEMCSSTLKKYEEWYNKRKTEWTEQS 294
Query: 63 EKLDK 67
K +
Sbjct: 295 IKYNN 299
Score = 28.3 bits (63), Expect = 9.0
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
K+K + ++ K K + + P EY
Sbjct: 284 NKRKTEWTEQSIKYNNDKINYTDIKTLSPSEYLI 317
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 34.1 bits (79), Expect = 0.16
Identities = 13/71 (18%), Positives = 27/71 (38%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGA 73
+E KK +K+ K+ K K+ K+ E+E+ +K + + + L
Sbjct: 50 DEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVG 109
Query: 74 QVVLSKLPIGD 84
+V +
Sbjct: 110 NIVHESVVDSQ 120
Score = 29.5 bits (67), Expect = 3.7
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 12 FCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
+ +EL K KK K K K K+ + +
Sbjct: 444 YIKELPKNTTSVKKAKGKNPKNTTSVKKAKGKN 476
Score = 28.4 bits (64), Expect = 8.1
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
K+ K KK K K K ++ +
Sbjct: 445 IKELPKNTTSVKKAKGKNPKNTTSVKKAKGKN 476
>3izc_K 60S ribosomal protein RPL16 (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_K
3o58_P 3o5h_P 3u5e_O 3u5i_O
Length = 199
Score = 33.0 bits (75), Expect = 0.16
Identities = 9/45 (20%), Positives = 15/45 (33%)
Query: 12 FCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDA 56
+L K+K + KK+ KK + K + A
Sbjct: 152 VVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQLAA 196
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast,
protein binding; NMR {Saccharomyces cerevisiae} PDB:
2jmj_A*
Length = 90
Score = 31.3 bits (70), Expect = 0.16
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 12 FCEELRKKKKKKKKKKKKKKKKK 34
+C + K+ ++ K K++K++K
Sbjct: 68 YCSKDCKEIANQRSKSKRQKRRK 90
Score = 28.2 bits (62), Expect = 2.6
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 11 HFCEELRKKKKKKKKKKKKK 30
C+E+ ++ K K++K++K
Sbjct: 71 KDCKEIANQRSKSKRQKRRK 90
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 33.4 bits (76), Expect = 0.24
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
+E + KKKKKKKKK + + +P
Sbjct: 82 DEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTDP 115
Score = 32.6 bits (74), Expect = 0.45
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
KKKKKKKKK+ + + + P
Sbjct: 87 DGDGDGDGATGKKKKKKKKKRGPKVQTDPP 116
Score = 31.0 bits (70), Expect = 1.2
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
E KKK++KKKK K +++ ++E DE + ++
Sbjct: 31 AEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERS 74
Score = 31.0 bits (70), Expect = 1.4
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
EE KKK++KKKK K +++ ++E + +++ +
Sbjct: 32 EEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSA 75
Score = 30.7 bits (69), Expect = 1.7
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
EE ++ KKK++KKKK K E+E E VD
Sbjct: 24 EEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEV 67
Score = 29.5 bits (66), Expect = 3.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
E ++ KKK++KKKK K E+EPD+
Sbjct: 23 REEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDK 58
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA
synthetase, ATP-binding, ligas nucleotide-binding,
protein biosynthesis; NMR {Brugia malayi}
Length = 113
Score = 31.5 bits (71), Expect = 0.25
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDA 56
KK K+ +++ K +K K E++ E + +A
Sbjct: 62 KKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKAALEEA 99
Score = 31.5 bits (71), Expect = 0.26
Identities = 7/41 (17%), Positives = 19/41 (46%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKI 60
KK K+ +++ K +K + E++ + ++ K+
Sbjct: 62 KKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKAALEEAKKV 102
Score = 30.4 bits (68), Expect = 0.58
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
KK K+ +++ K +K K E++ E +
Sbjct: 62 KKSWKRYEQEMLKNEKVAAKMLEKDATEVGVK 93
Score = 27.7 bits (61), Expect = 4.3
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 21 KKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
KK K+ +++ K +K + E++ + K E K + +LD
Sbjct: 62 KKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKAALEEAKKVQIELDT 108
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB:
3izs_e 3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 32.9 bits (74), Expect = 0.26
Identities = 4/42 (9%), Positives = 16/42 (38%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVD 55
++ ++ ++ +K K+K+ E + + +
Sbjct: 20 QKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERN 61
Score = 32.1 bits (72), Expect = 0.49
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIH 69
R +K K+K+ ++ ++E E E + Q DA+ Y +
Sbjct: 28 AERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAGSYYVEAQHK 82
Score = 30.9 bits (69), Expect = 0.94
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 9 RAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEE 45
E +K K+K+ ++ ++E E E
Sbjct: 23 AEQVAAERAARKAANKEKRAIILERNAAYQKEYETAE 59
Score = 30.6 bits (68), Expect = 1.2
Identities = 7/40 (17%), Positives = 19/40 (47%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKV 53
E++ ++ +K K+K+ ++ ++E E E +
Sbjct: 24 EQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNII 63
Score = 27.9 bits (61), Expect = 8.4
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 14 EELRKKKK-----KKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
E KK K ++ ++ +K K++ E YQK
Sbjct: 10 ESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQK 53
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 32.7 bits (74), Expect = 0.30
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
+ KK +K KK +KKK K K+ + E D
Sbjct: 73 KPKKTQKPKKPTQKKKSKPGKRMRNCMKIEND 104
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 33.2 bits (76), Expect = 0.30
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 12 FCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDA 56
F + +++ KK+KK+ + KKK + E + +V DA
Sbjct: 470 FVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNMEVTDA 514
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 203
Score = 32.3 bits (73), Expect = 0.32
Identities = 13/39 (33%), Positives = 26/39 (66%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKV 53
E ++K+K K +KKK+ + +K+ E+ E++ D+Y +V
Sbjct: 157 EEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEV 195
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransfera domain;
2.90A {Escherichia coli}
Length = 479
Score = 32.8 bits (75), Expect = 0.36
Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 6/78 (7%)
Query: 11 HFCEELRKKK----KKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLD 66
F LRK + K K K E + + + E L+++
Sbjct: 303 FFVARLRKTQAIPALPAPKYKVGNFPFSPVKDREAGQIRQAATGVGLNWDENLRLWQRDK 362
Query: 67 KIHA--SGAQVVLSKLPI 82
++ G + ++ K+
Sbjct: 363 ELWLFPVGIEALIGKVRF 380
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 32.2 bits (73), Expect = 0.36
Identities = 8/47 (17%), Positives = 19/47 (40%)
Query: 10 AHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDA 56
E+L +K++ + K KK K+ +++E + +
Sbjct: 149 QTLIEKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAIKDKLAQ 195
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 32.4 bits (73), Expect = 0.37
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKK 38
E+LRK K +++K + K++K +
Sbjct: 17 EKLRKAKAEQRKASSAQMKQRKAEW 41
Score = 30.1 bits (67), Expect = 2.0
Identities = 7/38 (18%), Positives = 19/38 (50%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVV 54
+ +++K + K++K + K ++ E +K+V
Sbjct: 23 KAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIV 60
Score = 29.7 bits (66), Expect = 2.4
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQ 51
E RK + K++K + K +K E E E
Sbjct: 25 EQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVD 61
Score = 29.4 bits (65), Expect = 2.8
Identities = 5/31 (16%), Positives = 15/31 (48%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
+ +++K + K++K + K ++ E
Sbjct: 21 KAKAEQRKASSAQMKQRKAEWISKAQKYAAE 51
Score = 29.4 bits (65), Expect = 3.4
Identities = 8/38 (21%), Positives = 20/38 (52%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
E +K K +++K + K++K + + ++ EY+
Sbjct: 17 EKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEA 54
Score = 29.0 bits (64), Expect = 4.4
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKE 39
+K + +K +K K +++K +
Sbjct: 10 QKKLARDEKLRKAKAEQRKASSAQ 33
Score = 29.0 bits (64), Expect = 4.8
Identities = 5/35 (14%), Positives = 17/35 (48%)
Query: 9 RAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEE 43
A + + K +++K + K++K + + ++
Sbjct: 13 LARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQK 47
Score = 28.6 bits (63), Expect = 5.2
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 14 EELRKKKK-----KKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
E ++KK +K K +++K + K+ + E + +Y
Sbjct: 7 ENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAA 50
Score = 28.2 bits (62), Expect = 6.5
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 9 RAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
R E+ + + K++K + K +K E E E+
Sbjct: 20 RKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEK 57
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM,
splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo
sapiens} PDB: 3cw1_A
Length = 231
Score = 31.9 bits (72), Expect = 0.41
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 9/39 (23%)
Query: 3 IYKGQFRA---HF------CEELRKKKKKKKKKKKKKKK 32
I+ G F+A H C+E RK K K K+ ++++K
Sbjct: 26 IFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEK 64
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 32.1 bits (72), Expect = 0.41
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVD 55
EL+ K+ +KK K +K ++K E+ + + Q
Sbjct: 48 AELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRT 89
Score = 29.1 bits (64), Expect = 4.7
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 9 RAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEE 43
R +F E K+ +KK K +K ++K E+ +
Sbjct: 44 RRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKH 78
Score = 28.3 bits (62), Expect = 6.5
Identities = 7/40 (17%), Positives = 17/40 (42%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKV 53
+ +KK K +K ++K +K + +E ++
Sbjct: 52 VKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEI 91
Score = 28.3 bits (62), Expect = 6.5
Identities = 8/53 (15%), Positives = 18/53 (33%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
+ K +K ++K +K K +E + E + A + +
Sbjct: 56 RKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAE 108
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 31.8 bits (71), Expect = 0.41
Identities = 7/44 (15%), Positives = 24/44 (54%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKI 60
+K+K ++ K+ ++++ + + + +++ P Q+ D W +
Sbjct: 139 VRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDL 182
Score = 31.0 bits (69), Expect = 0.80
Identities = 7/40 (17%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 15 ELRKKKKKKKKKKKKKKKKK-----KKKKEEEEEEEEPDE 49
++RK+K ++ K+ ++++ + + K++ ++E D+
Sbjct: 138 DVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADD 177
Score = 28.3 bits (62), Expect = 6.0
Identities = 4/49 (8%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 14 EELRK-----KKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
+E ++ + +K+K ++ K+ +++ + ++ +
Sbjct: 125 QECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQ 173
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_e
Length = 244
Score = 32.1 bits (72), Expect = 0.42
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKK 38
E +KK+K +K K + K
Sbjct: 22 EVWAAEKKQKVAAEKIKAAENTKVI 46
Score = 29.4 bits (65), Expect = 2.7
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 9 RAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEE 42
R +KK+K +K K + K E
Sbjct: 18 RRREEVWAAEKKQKVAAEKIKAAENTKVIYARAE 51
Score = 29.4 bits (65), Expect = 3.1
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKV 53
E ++K +K K + K + E+ E E + + V
Sbjct: 26 AEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELV 65
Score = 29.0 bits (64), Expect = 4.1
Identities = 8/53 (15%), Positives = 20/53 (37%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
+ +K K + K + ++ E E ++ + Q +A K + +
Sbjct: 30 QKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGGFYVSPE 82
Score = 28.3 bits (62), Expect = 8.0
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEE 43
E++ K+++++ +KK+K +K + E
Sbjct: 12 EKVILKRRREEVWAAEKKQKVAAEKIKAAE 41
>3v2c_Y Ribosome-associated inhibitor A; RAIA, protein Y, stress RES
stationary phase, ribosome hibernation,
ribosome-inhibitor; 2.70A {Escherichia coli k-12} PDB:
3v2e_Y 1n3g_A 1l4s_A 1voq_a 1vos_a 1vov_a 1vox_a 1voz_a
Length = 119
Score = 30.7 bits (70), Expect = 0.42
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEY 50
L K + K + ++ K EE EEE +
Sbjct: 85 LNKLQHKGEARRAATSVKDANFVEEVEEEHHHHHH 119
Score = 29.2 bits (66), Expect = 1.4
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQ 51
K + K + ++ K EE EEE +
Sbjct: 86 NKLQHKGEARRAATSVKDANFVEEVEEEHHHHHH 119
Score = 27.6 bits (62), Expect = 5.7
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 22 KKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
K + K + ++ K+ EE +E+
Sbjct: 86 NKLQHKGEARRAATSVKDANFVEEVEEEHHH 116
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G
3o58_F 3o5h_F 3u5e_E 3u5i_E
Length = 176
Score = 31.6 bits (71), Expect = 0.44
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
K+K KK+KK+ +++ +E + E E QKVVD
Sbjct: 107 AKEKLTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKA 144
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_G
Length = 219
Score = 31.9 bits (72), Expect = 0.44
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 10 AHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
F ++ ++KK + KK + + + K+ + + + QKV+DAE
Sbjct: 140 QKFDDKYFAREKKTRAKKTEGELFESDKEATKNLPDFKKDDQKVIDAE 187
>1kvn_A SRP19; RNA binding protein; NMR {Archaeoglobus fulgidus} SCOP:
d.201.1.1 PDB: 1kvv_A
Length = 104
Score = 30.5 bits (69), Expect = 0.45
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 5 KGQFRAHFCEELRKKKKKKKKKKKKKKKKKK 35
K + ++ + +++K+++KK KKKKKK
Sbjct: 74 KTKLMIELARKIAEIREQKREQKKDKKKKKK 104
>2oqk_A Putative translation initiation factor EIF-1A; malaria,
eukaryotic initiation facto SGC, structural genomics;
1.80A {Cryptosporidium parvum iowa II}
Length = 117
Score = 30.8 bits (69), Expect = 0.48
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVV 54
K K K K +++ K + K E +EE EY +V
Sbjct: 3 KNKGKGGKNRRRGKNDSEGDKRELVFKEEGQEYGQVQ 39
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 30.8 bits (69), Expect = 0.50
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEE 40
KK K +K K KKKK+K++E
Sbjct: 11 KKAGKAQKNITKTDKKKKRKRKE 33
Score = 30.4 bits (68), Expect = 0.58
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKE 39
+K K +K K KKKK+K+KE
Sbjct: 11 KKAGKAQKNITKTDKKKKRKRKE 33
Score = 30.1 bits (67), Expect = 0.86
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEE 41
KK K +K K KKKK+K +E
Sbjct: 9 AAKKAGKAQKNITKTDKKKKRKRKE 33
Score = 29.7 bits (66), Expect = 1.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEE 43
K KK K +K K KKKK + +E
Sbjct: 7 GKAAKKAGKAQKNITKTDKKKKRKRKE 33
Score = 27.7 bits (61), Expect = 4.7
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 18 KKKKKKKKKKKKKKKKKKKKK 38
K KK K +K K KK
Sbjct: 6 SGKAAKKAGKAQKNITKTDKK 26
Score = 27.0 bits (59), Expect = 9.4
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKK 38
+ K KK K +K K K
Sbjct: 4 KTSGKAAKKAGKAQKNITKTDK 25
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 32.2 bits (74), Expect = 0.51
Identities = 14/70 (20%), Positives = 30/70 (42%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGA 73
LR ++ K + K++KK + E + E + ++ E + L +K+D
Sbjct: 48 NRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLP 107
Query: 74 QVVLSKLPIG 83
+ +P+G
Sbjct: 108 NITHPSVPVG 117
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 32.0 bits (73), Expect = 0.60
Identities = 8/71 (11%), Positives = 21/71 (29%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGA 73
E+ + K + + + E + ++ + K +KL+ +
Sbjct: 152 YEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQKLEALLLQVP 211
Query: 74 QVVLSKLPIGD 84
P+G
Sbjct: 212 LPPWPGAPVGG 222
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E
ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia
coli} PDB: 3naw_A* 3sqv_A
Length = 613
Score = 32.2 bits (73), Expect = 0.60
Identities = 26/162 (16%), Positives = 55/162 (33%), Gaps = 21/162 (12%)
Query: 3 IYKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKK--KKEEEEEEEEPDEYQKVVDAEWKI 60
I + + F E L K K +++K + E ++ +
Sbjct: 447 ISDNELKERFIEALNSNKSDYKMIADDQQRKLACVWNPFLDGWELNAQHVDMIMGS---- 502
Query: 61 LYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTT 120
+ D A+++ +G V +Y + DMF E D ++ ++
Sbjct: 503 -HVLKDMPLRKQAEILFC---LGGVFCKYSSS-DMFGT----EYDSPEILRRYANGLIEQ 553
Query: 121 AHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVR 162
A+ + V G+ +++ + G N TCT ++
Sbjct: 554 AYKTDPQVFGSVYYYNDIL------DRLQGRNNVFTCTAVLT 589
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 32.0 bits (72), Expect = 0.72
Identities = 8/51 (15%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 14 EELRKKKKKKKKKKKKKKKK-----KKKKKEEEEEEEEPDEYQKVVDAEWK 59
++ +KK K+ ++ ++ KK +++ +EE +K +
Sbjct: 389 LQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTN 439
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 145
Score = 30.7 bits (69), Expect = 0.74
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
RKK ++K K ++ K+K K KEE E+
Sbjct: 115 RKKILERKAKSRQVGKEKGKYKEETIEK 142
Score = 30.4 bits (68), Expect = 0.91
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
+KK ++K K ++ K+K K +EE E+ E
Sbjct: 114 DRKKILERKAKSRQVGKEKGKYKEETIEKMQE 145
Score = 28.8 bits (64), Expect = 2.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
+K ++K K ++ K+K K K+E E+ +E
Sbjct: 116 KKILERKAKSRQVGKEKGKYKEETIEKMQE 145
Score = 28.8 bits (64), Expect = 2.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
+L K +KK ++K K ++ K+K + +EE E
Sbjct: 110 KLDKDRKKILERKAKSRQVGKEKGKYKEETIE 141
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
transferase; 2.28A {Enterococcus faecium}
Length = 456
Score = 31.9 bits (73), Expect = 0.75
Identities = 13/60 (21%), Positives = 24/60 (40%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHA 70
HF +L + + K+KK +KK K + +E+E+ + L D +
Sbjct: 295 HFVAKLTFHGQNQMHKEKKTRKKSKVQMTKEQEKLWTEFSNDFHYEATGRLLVFNDHLWE 354
>3bqk_A Pfemp1 protein, erythrocyte membrane protein 1; malaria, pregnancy,
VAR2CSA encoded pfemp1 protein, DBL3X DO chondroitin
sulphate A; 1.80A {Plasmodium falciparum} PDB: 3bqi_A
3bql_A 3cml_A 3cpz_A
Length = 360
Score = 31.5 bits (71), Expect = 0.77
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 10/66 (15%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD---------EYQKVVDAEWKIL 61
FC E + ++ ++ K +KK + + + +Y+K + E K
Sbjct: 243 QFCIERLRYEQNIREACTINGKNEKKCINSKSGQGDKIQGACKRKCEKYKKYIS-EKKQE 301
Query: 62 YEKLDK 67
++K
Sbjct: 302 WDKQKT 307
Score = 29.2 bits (65), Expect = 3.9
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVV-------DAEWKILYE 63
+ + + +KK++ K+K K + K K + +E E + E+K Y
Sbjct: 290 KYKKYISEKKQEWDKQKTKYENKYVGKSASDLLKENYPECISANFDFIFNDNIEYKTYYP 349
Query: 64 KLDKI 68
D
Sbjct: 350 YGDYS 354
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2
c.62.1.4 PDB: 1jeq_B*
Length = 565
Score = 31.7 bits (71), Expect = 0.78
Identities = 4/32 (12%), Positives = 14/32 (43%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEE 45
+++ + KKK + ++ ++ E+
Sbjct: 531 SKIKTLFPLIEAKKKDQVTAQEIFQDNHEDGP 562
Score = 31.7 bits (71), Expect = 0.85
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
K + KKK + ++ ++ E+ P
Sbjct: 534 KTLFPLIEAKKKDQVTAQEIFQDNHEDGPT 563
Score = 30.6 bits (68), Expect = 2.0
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
K + KKK + ++ ++ E+
Sbjct: 534 KTLFPLIEAKKKDQVTAQEIFQDNHEDGPT 563
Score = 28.3 bits (62), Expect = 9.4
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 14 EELRKKKKK-----KKKKKKKKKKKKKKKKEEEEEEEEPDE 49
E+ K + K + KKK + +E ++ ++
Sbjct: 520 AEVTTKSQIPLSKIKTLFPLIEAKKKDQVTAQEIFQDNHED 560
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 31.5 bits (72), Expect = 0.80
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
Query: 21 KKKKKKKKKKKKKKKKKKEEEEEEEEPDEY---QKVVDAEWKILYEKLDKIHASGAQVV 76
++ + + E E+E + V L L ++ A G VV
Sbjct: 265 ARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRSVV 323
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 31.5 bits (71), Expect = 0.80
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
+++KK + K++KK KE+++ E EP
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAEP 139
Score = 31.5 bits (71), Expect = 0.80
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
+++KK + K++KK K+K++ E E
Sbjct: 111 HLVQREKKLSRTKEEKKAIKEKQDAEAEP 139
Score = 30.4 bits (68), Expect = 1.9
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
+++KK + K++KK K++++ E E
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAEP 139
Score = 30.0 bits (67), Expect = 2.7
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 22 KKKKKKKKKKKKKKKKKEEEEEEEEPDEY 50
+++KK + K++KK +E+++ E + Y
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAEPY 140
Score = 30.0 bits (67), Expect = 2.8
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 12 FCEELRKKKKKKKKKKKKKKKKKKKKKEEE 41
+ R+KK + K++KK K+K+ + E
Sbjct: 110 WHLVQREKKLSRTKEEKKAIKEKQDAEAEP 139
Score = 29.2 bits (65), Expect = 4.1
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEE 45
+++KK + K++KK K+K++ E E
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAEP 139
Score = 28.8 bits (64), Expect = 5.9
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 9 RAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEE 42
+ ++KK + K++KK K+K+ E E
Sbjct: 108 YQWHLVQ--REKKLSRTKEEKKAIKEKQDAEAEP 139
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins
binding, carbohydrate binding, calcium binding,
endoplasmic reticulu; 2.57A {Mus musculus}
Length = 332
Score = 31.6 bits (71), Expect = 0.83
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEE 45
F E K +K+ K K+ ++++ K E
Sbjct: 297 EFGNETWGVTKAAEKQMKDKQDEEQRLKLEHHHHH 331
Score = 28.5 bits (63), Expect = 7.6
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
EE + K +K+ K K+ +++ + E
Sbjct: 296 EEFGNETWGVTKAAEKQMKDKQDEEQRLKLEHH 328
Score = 28.1 bits (62), Expect = 9.0
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
K +K+ K K+ ++++ + E
Sbjct: 304 GVTKAAEKQMKDKQDEEQRLKLEHHHHH 331
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 31.7 bits (71), Expect = 0.84
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIH 69
+ K + KK KK+K +++KK+E EE+E+ E K E K E+ K
Sbjct: 819 ARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNK 871
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding;
NMR {Schizosaccharomyces pombe}
Length = 108
Score = 29.6 bits (66), Expect = 0.91
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 8 FRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
+ K+K K+ + + K + +EE E
Sbjct: 67 LLDSEIAKFLGSSKRKSKELIEAYEASKTPPDLKEESSTDLE 108
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 30.1 bits (67), Expect = 0.94
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEE 42
KK KK K +KK KK+KK +E
Sbjct: 12 KKGSKKAVTKTQKKGDKKRKKSRKE 36
Score = 29.8 bits (66), Expect = 1.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEE 41
+K KK K +KK KK+KK +E
Sbjct: 12 KKGSKKAVTKTQKKGDKKRKKSRKE 36
Score = 28.6 bits (63), Expect = 2.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEE 43
KK KK K +KK KK+K+ +E
Sbjct: 11 PKKGSKKAVTKTQKKGDKKRKKSRKE 36
Score = 27.4 bits (60), Expect = 6.3
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKK 38
KK KK K +KK KK
Sbjct: 8 APAPKKGSKKAVTKTQKKGDKK 29
Score = 27.4 bits (60), Expect = 7.7
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 18 KKKKKKKKKKKKKKKKKKKKK 38
KK KK K +KK KK+
Sbjct: 10 APKKGSKKAVTKTQKKGDKKR 30
Score = 27.1 bits (59), Expect = 8.5
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEE 40
E + KK KK K +KK ++
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKK 29
>1zro_A Erythrocyte binding antigen region II; EBA-175, RII, DBL, invasion,
HOST, malaria, disease, glycophorin, glycan, sialic
acid; HET: SO4; 2.25A {Plasmodium falciparum} SCOP:
a.264.1.1 a.264.1.1 PDB: 1zrl_A*
Length = 602
Score = 31.5 bits (71), Expect = 1.0
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
+C + K K + K + K+K E++ + + + Y++ + + K Y K K
Sbjct: 492 DYC------QDKTKMIETLKVECKEKPCEDDNCKRKCNSYKEWIS-KKKEEYNKQAK 541
Score = 29.6 bits (66), Expect = 4.0
Identities = 11/57 (19%), Positives = 21/57 (36%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
F E + K K K K + +KE + + ++ EW L ++ +
Sbjct: 186 EFLLERDNRAKLPKSKCKNNALYEACEKECIDPCMKYRDWIIRSKFEWHTLSKEYET 242
>3iz6_Q 40S ribosomal protein S17 (S17E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 141
Score = 30.0 bits (67), Expect = 1.1
Identities = 12/82 (14%), Positives = 22/82 (26%), Gaps = 10/82 (12%)
Query: 22 KKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKV----------VDAEWKILYEKLDKIHAS 71
++ ++ + K +EEE E ++ VD E + L
Sbjct: 56 HLMRRIQRGPVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLP 115
Query: 72 GAQVVLSKLPIGDVATQYFADR 93
G + Y R
Sbjct: 116 GVERQQEVSAPTYSRPPYGGPR 137
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 31.3 bits (72), Expect = 1.1
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 174 RSLHDAIMIVRRTIRN---HAVVAGGGAIEMELSKALRDYSGL 213
+L +A + AV+ GGG I +E++ +L D G+
Sbjct: 142 TNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGI 184
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 30.0 bits (67), Expect = 1.1
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 5 KGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVV 54
K + R E+ + K+ KK K+ KK + + + K V
Sbjct: 97 KPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPV 146
Score = 29.3 bits (65), Expect = 2.4
Identities = 9/58 (15%), Positives = 24/58 (41%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHAS 71
+ + +K ++++ + K+ KK ++ ++ + A K K K+ A
Sbjct: 94 RNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAP 151
Score = 27.7 bits (61), Expect = 7.2
Identities = 7/40 (17%), Positives = 14/40 (35%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKV 53
E + K+ KK K K +++ + +V
Sbjct: 114 EAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRV 153
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Length = 151
Score = 30.2 bits (68), Expect = 1.1
Identities = 4/25 (16%), Positives = 6/25 (24%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEE 41
KK +K+ E
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENV 27
Score = 29.0 bits (65), Expect = 2.7
Identities = 4/25 (16%), Positives = 6/25 (24%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEE 42
KK +K+ E
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENV 27
Score = 28.3 bits (63), Expect = 4.9
Identities = 4/25 (16%), Positives = 6/25 (24%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEE 43
KK +K+ E
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENV 27
Score = 27.9 bits (62), Expect = 7.0
Identities = 4/25 (16%), Positives = 6/25 (24%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEEEE 44
KK +K+ E
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENV 27
>4a18_L RPL34; ribosome, eukaryotic initiation factor 6, EIF6, transla
large ribosomal subunit, rRNA; 3.52A {Tetrahymena
thermophila} PDB: 4a19_L 4a1b_L 4a1d_L 4adx_4
Length = 123
Score = 29.6 bits (66), Expect = 1.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 8 FRAHFCEELRKKKKKKKKKKKKKKKKKKKKKE 39
RA EE++ K+K K K KKKK+ +K+
Sbjct: 92 IRAFLTEEVKIVKRKMISKPKTDKKKKRSQKK 123
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 31.0 bits (70), Expect = 1.2
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 18 KKKKKKKKKKKKKKKKK---KKKKEEEEEEEEPDEYQKVVDAEWK 59
+++ +++ ++KK + +EE + + E D E K
Sbjct: 274 QQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMK 318
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 30.7 bits (68), Expect = 1.2
Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILY-EKLDKIHAS 71
E +RK +++++K+ ++ K ++E E+ + D EW E+++K +
Sbjct: 100 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDL------EEWNQRQSEQVEKNKIN 152
>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL ATP11; half
barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs
138}
Length = 299
Score = 30.9 bits (69), Expect = 1.3
Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 17/116 (14%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGA 73
EEL+K+ + ++KKK+ K +E E+ + + + K ++ +
Sbjct: 34 EELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHTNKEHKTTKMSNKSNEKSGNVL 93
Query: 74 QVV--------------LSKLPIGDVA---TQYFADRDMFCAGRVPEEDLKRTMKA 112
+ L +V +++RD VP + M
Sbjct: 94 PKDKPYKTLDDYLKLDKIKDLSKQEVEFLWRAKWSNRDDSLVAVVPYVKTFQGMYK 149
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel,
RNA-binding protein, gene regulation; NMR {Homo
sapiens} SCOP: b.40.4.5
Length = 143
Score = 30.0 bits (67), Expect = 1.3
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVV 54
K K K K +++ K + + +K E +E+ EY +V+
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVI 38
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A
{Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Length = 102
Score = 29.0 bits (64), Expect = 1.4
Identities = 3/26 (11%), Positives = 15/26 (57%)
Query: 12 FCEELRKKKKKKKKKKKKKKKKKKKK 37
+ + +K+++ +K +++ + K +
Sbjct: 77 YVDTNLQKQRELQKANQEQYAEGKMR 102
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 31.0 bits (70), Expect = 1.4
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
L+ K+ ++K + KK+ + +E A+
Sbjct: 627 LKDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAK 668
Score = 29.4 bits (66), Expect = 4.0
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
K+ ++K + KK+ K + +E E A
Sbjct: 633 KQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAP 672
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 29.6 bits (66), Expect = 1.6
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 5 KGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKV 53
K + R E ++ K++ KK K +KK KK + + ++ + +
Sbjct: 100 KPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQR 148
Score = 28.9 bits (64), Expect = 3.4
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 9 RAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDA 56
A LR+ K++ KK K +KK KK + + ++ + + Q+
Sbjct: 105 DAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKG 152
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
rossmann fold, LEFT-handed-beta-helix, cell shape; HET:
COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB:
3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Length = 501
Score = 30.6 bits (70), Expect = 1.7
Identities = 3/32 (9%), Positives = 14/32 (43%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
++K+ + K+ + ++ + + D+
Sbjct: 468 QRKRPGSPAAQASKRASEMACQQPTQPPDADQ 499
Score = 28.7 bits (65), Expect = 7.0
Identities = 5/32 (15%), Positives = 14/32 (43%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQ 51
++K+ + K+ + ++ + PD Q
Sbjct: 468 QRKRPGSPAAQASKRASEMACQQPTQPPDADQ 499
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 30.4 bits (68), Expect = 1.7
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 19/52 (36%)
Query: 17 RKKKKKKKKKKKKKKKKKK-------------------KKKEEEEEEEEPDE 49
K KK+ K+ KK ++++EEE DE
Sbjct: 253 MAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEEEDDE 304
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 70
Score = 27.9 bits (62), Expect = 1.7
Identities = 3/22 (13%), Positives = 8/22 (36%)
Query: 12 FCEELRKKKKKKKKKKKKKKKK 33
+C + K++ + K
Sbjct: 48 YCPQCTAAMKRRGSRHKSGPSS 69
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP,
pseudouridine synthase, guide RNA, isomerase
biosynthetic protein-RNA complex; HET: ATP; 2.30A
{Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Length = 104
Score = 28.8 bits (64), Expect = 1.7
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 12 FCEELRKKKKKKKKKKKKKKKKKKKKK 38
+ +E ++K+ KK K+K+ KKKK+ +
Sbjct: 78 YVDERKRKESPKKNKEKRMKKKKRLNR 104
Score = 26.9 bits (59), Expect = 7.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKE 39
++K+K+ KK K+K+ KKKK
Sbjct: 80 DERKRKESPKKNKEKRMKKKKR 101
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_K
Length = 206
Score = 29.9 bits (67), Expect = 2.0
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDA 56
E ++K+K K ++K+ K + K E+ EE+ +++
Sbjct: 162 EEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAP 203
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 29.4 bits (67), Expect = 2.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEE 45
K+KK +K+ K+ +KK+K K E
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 29.4 bits (67), Expect = 2.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 12 FCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
F ++L K+KK +K+ K+ +KK+K K E
Sbjct: 147 FVDKLSILKRKKFEKELKELQKKQKHKLEHHHHHH 181
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
adoMet, MULT specific, methyltransferase, transferase;
HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A*
3m6u_A* 3m6x_A*
Length = 464
Score = 30.4 bits (69), Expect = 2.1
Identities = 4/38 (10%), Positives = 11/38 (28%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
HF RK+ + ++ ++ +
Sbjct: 292 HFLARFRKEGGAWSTPRLERPSPLSQEALRAFRGFLEE 329
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 30.2 bits (67), Expect = 2.3
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
+ KK KK KK KK +++ E++P +K
Sbjct: 381 VGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEK 417
Score = 29.8 bits (66), Expect = 2.8
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEE 42
+ + KK KK KK +KK EE
Sbjct: 388 KPVVGKKAAATKKPAADKKPAEKKPTTEE 416
Score = 29.1 bits (64), Expect = 4.8
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
KK KK KK +K+ EE++P
Sbjct: 389 PVVGKKAAATKKPAADKKPAEKKPTTEEKKP 419
Score = 29.1 bits (64), Expect = 5.5
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWK 59
+K KK KK KK KK ++ + +K E K
Sbjct: 375 KKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEK 417
Score = 29.1 bits (64), Expect = 5.7
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
++ KK KK KK +KK EE++
Sbjct: 387 KKPVVGKKAAATKKPAADKKPAEKKPTTEEKKPA 420
Score = 28.7 bits (63), Expect = 6.7
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
+ RKK KK KK KK KK ++
Sbjct: 371 KPRRKKGKKTVGVKKPKKPVVGKKAAATKKP 401
Score = 28.7 bits (63), Expect = 7.5
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
++K KK KK KK K+ E++ +E
Sbjct: 382 GVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEE 416
Score = 28.3 bits (62), Expect = 8.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
++ R+KK KK KK KK KK ++ D
Sbjct: 370 KKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAAD 404
Score = 28.3 bits (62), Expect = 9.2
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
+ KK KK KK KK ++ +++P E
Sbjct: 374 RKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAE 409
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 30.2 bits (69), Expect = 2.4
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEW 58
LR +++ +++ + KK K+K+ +E E D+ VV + W
Sbjct: 424 SLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVV-SSW 466
>2y8d_A Erythrocyte membrane protein 1; DBL epsilon, pfemp1, malaria; 1.84A
{Plasmodium falciparum}
Length = 306
Score = 29.8 bits (67), Expect = 2.4
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVD---AEWKILYEKLDK 67
+FC+ + K K + + + + Y+ + E++I K D
Sbjct: 189 NFCDRRQ-KLYDKLNSECISAECTNGSVDNSKCTHACVNYKNYILTKKTEYEIQTNKYDN 247
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 29.9 bits (68), Expect = 2.5
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEW 58
LR +++ +++ + KK K+K+ +E E D+ VV + W
Sbjct: 423 ASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVV-SSW 466
>2xzm_2 40S ribosomal protein S8; ribosome, translation; 3.93A {Tetrahymena
thermophila} PDB: 2xzn_2
Length = 208
Score = 29.4 bits (65), Expect = 2.7
Identities = 7/36 (19%), Positives = 19/36 (52%)
Query: 4 YKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKE 39
++ ++ H+ +L KK + K+K + +K+ +
Sbjct: 117 FREWYKLHYGIDLGLKKDRTVLGNKEKSRHVQKRVK 152
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 29.8 bits (66), Expect = 2.7
Identities = 7/54 (12%), Positives = 19/54 (35%)
Query: 1 VQIYKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVV 54
V + G + + ++ KK ++ ++ + Y++VV
Sbjct: 85 VGVGPGSSAGSNARAEFWRLRGLRRGAKKTTQRSREDLSALTRQGRYPPYERVV 138
Score = 29.0 bits (64), Expect = 5.2
Identities = 23/145 (15%), Positives = 44/145 (30%), Gaps = 11/145 (7%)
Query: 2 QIYKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKIL 61
+ Q + + + + ++ KK + E+ +
Sbjct: 77 SLEAAQRAVGVGPGSSAGSNARAEFWRLRGLRRGAKKTTQRSREDLSALTRQ---GRYPP 133
Query: 62 YEKLDKIHASGAQVVLSKLPIGDVATQYFADR--DMFCAGRVPEEDLKRTMKACGGAVMT 119
YE++ AS + V+ P+ D+A Q D F E + RT +
Sbjct: 134 YERVVLREASFKRPVVILGPVADIAMQKLTAEMPDQFEIA----ETVSRTDSPSKIIKLD 189
Query: 120 TAHDLNDSVLGTCAVFDERQIGSER 144
T + + A+ D ER
Sbjct: 190 TVRVIAEK--DKHALLDVTPSAIER 212
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A
{Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q
3u5g_Z
Length = 108
Score = 28.4 bits (63), Expect = 2.8
Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
+ K K KK KKK ++ ++ ++ ++D + Y+++ K
Sbjct: 6 QLSKAAKAAAALAGGKKSKKKWSKKSMKDRAQHAVILD---QEKYDRILK 52
Score = 26.9 bits (59), Expect = 8.3
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEE 40
+ KK KKK KK K+
Sbjct: 12 KAAAALAGGKKSKKKWSKKSMKDR 35
>3ke7_A Putative ketosteroid isomerase; structural genomics, joint C
structural genomics, JCSG, protein structure initiative;
HET: MSE BCN; 1.45A {Parabacteroides distasonis atcc
8503}
Length = 134
Score = 28.7 bits (63), Expect = 2.8
Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 9/131 (6%)
Query: 418 GEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL--DDLLPLNMIGIKKVAGGALE 475
G+ + + K + +I +K + A + L D++ + K+ G
Sbjct: 1 GQQKNMENKTLNENIPEMIISLEKEALASTDPMAFVELSDTDVIYFDPSLETKIEGLEQL 60
Query: 476 DSLLVDGVSFKKTFAYAGFEM-QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQK 534
+ F+M +P IA+L L+ + V Y++
Sbjct: 61 RTYYKGMQLPPADH----FDMIRPVVQVAQNIAVLTFNLDSYLSDKVIKWNCTEV--YRR 114
Query: 535 VVDAEWKILYE 545
D +WKI+
Sbjct: 115 NPDNQWKIIQT 125
Score = 27.5 bits (60), Expect = 8.5
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 233 DGFEM-QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYE 286
D F+M +P IA+L L+ + V Y++ D +WKI+
Sbjct: 73 DHFDMIRPVVQVAQNIAVLTFNLDSYLSDKVIKWNCTEV--YRRNPDNQWKIIQT 125
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 30.1 bits (68), Expect = 2.9
Identities = 8/55 (14%), Positives = 19/55 (34%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHA 70
L K+ + ++ + E+ E + E + E+ + +D A
Sbjct: 103 LDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRA 157
Score = 30.1 bits (68), Expect = 3.0
Identities = 6/54 (11%), Positives = 20/54 (37%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHAS 71
K+ K+ + ++ + E+ E + ++ + + ++I S
Sbjct: 101 KRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDS 154
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A
{Saccharomyces cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P
3u5g_X 3jyv_L* 1s1h_L* 2zkq_l 3iz6_L
Length = 145
Score = 28.9 bits (64), Expect = 2.9
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKK 38
R+ + + KK+ K
Sbjct: 19 RRNNRWAENNYKKRLLGTAFKS 40
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 29.2 bits (66), Expect = 3.0
Identities = 5/25 (20%), Positives = 16/25 (64%)
Query: 13 CEELRKKKKKKKKKKKKKKKKKKKK 37
++R ++ K+K +++ +K+K+
Sbjct: 167 VRQVRLRRDSKEKNERRLAYQKRKE 191
>3u5c_I RP19, S14, YS9, 40S ribosomal protein S8-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_I
Length = 200
Score = 29.3 bits (65), Expect = 3.0
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 4 YKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
++ F AH+ + L KKK K+++ K K ++K + +
Sbjct: 109 FRQWFEAHYGQTLGKKKNVKEEETVAKSKNAERKWAARAASAKIE 153
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn
finger, ADP-ribosylation, D damage, DNA repair,
DNA-binding, glycosyltransferase; 1.70A {Homo sapiens}
PDB: 2jvn_A
Length = 160
Score = 28.8 bits (64), Expect = 3.0
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 30 KKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
+ KKK KKE++++ + + D W I ++L K
Sbjct: 4 EVAKKKSKKEKDKDSKLEKALKAQNDLIWNI-KDELKK 40
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil,
transcription/DNA complex; 6.50A {Thermus aquaticus}
SCOP: i.8.1.1
Length = 438
Score = 29.9 bits (67), Expect = 3.0
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 27 KKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKI 68
KK K KKK K +E E +E E + + + E + L +
Sbjct: 2 KKSKSKKKAAKAQEVEVKEPVKEPEPLPELEAAEDLQDLPEP 43
Score = 28.8 bits (64), Expect = 6.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
KK K KKK K ++ + K+ +E E E + + + D
Sbjct: 2 KKSKSKKKAAKAQEVEVKEPVKEPEPLPELEAAEDLQDLP 41
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 28.9 bits (64), Expect = 3.1
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 4 YKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
K + R EE K K+KKK +K +K +K K + + + K
Sbjct: 96 LKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAK 144
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea} SCOP:
i.1.1.1
Length = 140
Score = 28.8 bits (65), Expect = 3.1
Identities = 3/25 (12%), Positives = 9/25 (36%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEE 41
K ++ + +K +K +
Sbjct: 5 IPKIGSRRNGRISSRKSASARKIPK 29
Score = 28.4 bits (64), Expect = 3.6
Identities = 2/26 (7%), Positives = 9/26 (34%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEE 42
K ++ + +K ++ +
Sbjct: 4 PIPKIGSRRNGRISSRKSASARKIPK 29
Score = 27.3 bits (61), Expect = 8.8
Identities = 2/27 (7%), Positives = 9/27 (33%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEE 43
+ K ++ + +K + +
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition,
juxtamembrane domain, transferase; 2.10A {Homo sapiens}
SCOP: d.144.1.7
Length = 344
Score = 29.6 bits (67), Expect = 3.1
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKL 65
K KK+ + + + + + + E D + D +W+ E L
Sbjct: 2 KYKKQFRYESQLQMVQVTGSSDNEYFYVDFREYEYDLKWEFPRENL 47
>1xfx_A Calmodulin-sensitive adenylate cyclase; protein-protein
interaction, lyase/metal binding protein complex; 3.20A
{Bacillus anthracis} PDB: 1xfw_A* 1xfv_A 1xfy_A 1xfz_A
1y0v_A 1xfu_A
Length = 777
Score = 29.9 bits (66), Expect = 3.2
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 22 KKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLP 81
+ + K+ K +K + E+E+ D +V E+ E LDKI + Q +L K+P
Sbjct: 12 NEHYTESDIKRNHKTEKNKTEKEKFKDSINNLVKTEFT--NETLDKIQQT--QDLLKKIP 67
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase,
disease mutation, DNA replication, DNA-binding,
DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo
sapiens}
Length = 1172
Score = 29.9 bits (66), Expect = 3.3
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 24 KKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEW 58
K+ K K + K+ ++ + + + +W
Sbjct: 244 IAAKQGKHKVQPPTKQGQKSQRKARRGPAISSWDW 278
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 28.6 bits (63), Expect = 3.4
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVV 54
E ++ K+KK +KK+ +K + ++ + K
Sbjct: 108 EKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKT 147
Score = 28.6 bits (63), Expect = 3.5
Identities = 9/49 (18%), Positives = 23/49 (46%)
Query: 5 KGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKV 53
+ E+ ++ K+KK +KK+ +K + ++ + + E +K
Sbjct: 99 DASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKT 147
Score = 28.6 bits (63), Expect = 4.3
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWK 59
+ L KK + +K ++ K+KK + E++ + K V A K
Sbjct: 96 KNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKK 141
Score = 28.6 bits (63), Expect = 4.5
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 5 KGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKV 53
K EL++KK +KK+ +K + K + ++ E Q V
Sbjct: 103 KKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPV 151
Score = 28.2 bits (62), Expect = 5.2
Identities = 8/45 (17%), Positives = 23/45 (51%)
Query: 2 QIYKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
+ +A + +R+ K+KK +KK+ +K + ++ + ++
Sbjct: 97 NLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKK 141
Score = 27.8 bits (61), Expect = 8.1
Identities = 6/41 (14%), Positives = 20/41 (48%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
+ ++ K+KK +KK+ +K + ++ + + + +
Sbjct: 109 KAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQ 149
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone,
H2A/H2B, tata-DNA, transcription initiation, NC2,
negative cofactor, structural genomics, PSI; 2.62A {Homo
sapiens} SCOP: a.22.1.3
Length = 179
Score = 29.0 bits (64), Expect = 3.5
Identities = 9/47 (19%), Positives = 22/47 (46%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
+ E+++ ++ K K++K + + EEE Q+ + A+
Sbjct: 85 SYISEVKEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQELFAK 131
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 29.2 bits (65), Expect = 3.7
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEE 40
E +KK KK+ KKK+ + K +
Sbjct: 249 ENPVYEKKPKKEVKKKRWNRPKMSLAQ 275
Score = 28.9 bits (64), Expect = 5.4
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 11/59 (18%)
Query: 2 QIYKGQFRAHFCEELRKKKKKKKKKKKKKKKKK-----------KKKKEEEEEEEEPDE 49
++YK A + +KK KK+ KKK+ + K +KK +E E
Sbjct: 238 EMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAE 296
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 29.4 bits (67), Expect = 3.7
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 174 RSLHDAIMIVRRTIRN---HAVVAGGGAIEMELSKALRD 209
R+L D I + N +V G G + +E+ + L +
Sbjct: 131 RNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYE 169
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 29.3 bits (66), Expect = 3.7
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 196 GGAIEMELSKAL-RDYSGLGDKVRTGHPSDNSFHAISPD 233
G AIE LS + ++ L V G + +S +SP+
Sbjct: 95 GDAIEFLLSPMITNGFNDLTAAVLKGGTAISSEGTLSPE 133
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster,
iron-sulfur cluster, hydrolase/DNA complex; HET: PED;
1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1
PDB: 1orp_A* 1p59_A*
Length = 226
Score = 29.1 bits (66), Expect = 4.0
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 10 AHFCEELRKKKKKKKKKKKKKK 31
H C E +K+ +K+++K +K
Sbjct: 205 LHLCREGKKRMRKREEKAANQK 226
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_X 2go5_4 2j37_4
Length = 152
Score = 28.3 bits (63), Expect = 4.1
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 18 KKKKKKKKKKKKKKKKKKKKK 38
KK K ++ K K K
Sbjct: 6 AVKKADGKTQQALKVAKAVKS 26
Score = 28.3 bits (63), Expect = 4.1
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 18 KKKKKKKKKKKKKKKKKKKK 37
K KK K ++ K K
Sbjct: 4 KAAVKKADGKTQQALKVAKA 23
Score = 28.3 bits (63), Expect = 4.1
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 19 KKKKKKKKKKKKKKKKKKKK 38
K KK K ++ K K
Sbjct: 4 KAAVKKADGKTQQALKVAKA 23
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R
1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R*
1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U*
1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Length = 88
Score = 27.3 bits (61), Expect = 4.1
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
K K KK+ +++ +K K K E + D
Sbjct: 2 STKNAKPKKEAQRRPSRKAKVKATLGEFDLRD 33
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 29.4 bits (67), Expect = 4.1
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 174 RSLHDAIMIVRRTIRN--HAVVAGGGAIEMELSKALRD 209
+ L A+ + N V G G I ME L
Sbjct: 132 KFLSGALAA-VPLLENSQTVAVIGAGPIGMEAIDFLVK 168
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 29.0 bits (64), Expect = 4.4
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKE 39
E+ K K K KK K +K
Sbjct: 281 EDYTKFNTKDLKTGKKNSKMTAAQKA 306
Score = 29.0 bits (64), Expect = 4.9
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKK 38
K K KK K +K K
Sbjct: 288 TKDLKTGKKNSKMTAAQKALAK 309
Score = 28.3 bits (62), Expect = 7.6
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 18 KKKKKKKKKKKKKKKKKKKKK 38
K KK K +K K
Sbjct: 290 DLKTGKKNSKMTAAQKALAKV 310
Score = 28.3 bits (62), Expect = 9.0
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 18 KKKKKKKKKKKKKKKKKKKKK 38
K KK K +K K K
Sbjct: 292 KTGKKNSKMTAAQKALAKVDK 312
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 195
Score = 28.9 bits (64), Expect = 4.4
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 26 KKKKKKKKKKKKKEEEEEEEEPD 48
+ K+K +KK + EEE+ +
Sbjct: 173 RVKRKNQKKASGGGGDGEEEDEE 195
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Y
Length = 150
Score = 28.2 bits (62), Expect = 4.4
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEE 43
RK +K + K K K E+
Sbjct: 114 RKAILDRKASGRAADKAKGKFTAEDVA 140
Score = 27.8 bits (61), Expect = 7.4
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVD 55
+ +K +K + K K K E+ + +D
Sbjct: 112 KDRKAILDRKASGRAADKAKGKFTAEDVAAAGASLQEID 150
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 28.9 bits (64), Expect = 4.5
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
H+ L ++ K ++ K+ K+ + E
Sbjct: 213 HYTNGLYSLIQRSKCGPVGSDERVKEFKQSLIKYME 248
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 29.1 bits (66), Expect = 4.6
Identities = 9/48 (18%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKIL 61
E + +++ K++K+ + +++EEE++ + + V D W+++
Sbjct: 223 EPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWD--WELM 268
Score = 27.9 bits (63), Expect = 8.3
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 30 KKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
K + ++ EEEE +E + D E+ K
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKK 252
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 29.1 bits (66), Expect = 4.6
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 174 RSLHDAIMIVRRTIRN---HAVVAGGGAIEMELSKALRD 209
R++ D I++ N HA V GGG I +E+ ++L
Sbjct: 134 RNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHH 172
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 29.4 bits (66), Expect = 4.6
Identities = 9/55 (16%), Positives = 28/55 (50%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKI 68
E ++ + +KKK +++ +++ +EEE ++ + D + K + + + +
Sbjct: 941 ERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM 995
Score = 28.6 bits (64), Expect = 7.4
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 9 RAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
EE+R + KK++ ++ + + + EEEEE +
Sbjct: 907 LYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQ 944
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis,
apoptosis, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 134
Score = 28.1 bits (62), Expect = 4.6
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
E L+K+ K + K+K + E +++ P
Sbjct: 98 EALKKQLPGVKSEGKRKGDEVDGVDEVAKKKSGPSS 133
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 28.4 bits (63), Expect = 4.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEE 43
+ + K +++ +KKK +KK KK+K E
Sbjct: 155 QIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A;
translation, ribosome, ribosomal R ribosomal protein,
STM1, eukaryotic ribosome; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5i_g 3izc_i 3izs_i
Length = 121
Score = 27.7 bits (61), Expect = 4.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 8 FRAHFCEELRKKKKKKKKKKKKKKKKKKKKKE 39
RA EE + KK K++ + KK +KK K+
Sbjct: 90 IRAFLIEEQKIVKKVVKEQTEAAKKSEKKAKK 121
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A
{Pyrococcus horikoshii} PDB: 3gqx_B
Length = 169
Score = 28.4 bits (63), Expect = 5.2
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKE 39
+E+++K + K++K+++K +K KE
Sbjct: 144 KEIKEKYPRPPKRRKEERKGRKPWKE 169
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 29.0 bits (66), Expect = 5.2
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 174 RSLHDAIMIVRRTIRN---HAVVAGGGAIEMELSKALRD 209
+++ DA I++ N + GGGAI +E+++ +
Sbjct: 169 KTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVE 207
>3iz5_T 60S ribosomal protein L19 (L19E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_T
Length = 209
Score = 28.5 bits (63), Expect = 5.4
Identities = 5/35 (14%), Positives = 16/35 (45%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
++ K+ K K +++K +++++ E
Sbjct: 157 DQFEAKRAKSKASRERKIARREERLAPGPERSCTS 191
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 27.7 bits (61), Expect = 5.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKE 39
K K K+KKKK K K+KE
Sbjct: 14 KPAKSGGGKQKKKKWSKGKQKE 35
Score = 27.3 bits (60), Expect = 6.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEE 41
K K K+KKKK K K++E
Sbjct: 12 SSKPAKSGGGKQKKKKWSKGKQKE 35
Score = 26.9 bits (59), Expect = 9.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 18 KKKKKKKKKKKKKKKKKKKKK 38
K K+KKKK K K+K+K
Sbjct: 16 AKSGGGKQKKKKWSKGKQKEK 36
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 29.1 bits (66), Expect = 5.6
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 174 RSLHDAIMIVRRTIRN---HAVVAGGGAIEMELSKALRD 209
R++ D I HA V GGG I +E+ + LR+
Sbjct: 170 RNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRE 208
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP,
chromatin, beta-barrel; NMR {Schizosaccharomyces pombe}
SCOP: b.34.9.2
Length = 109
Score = 27.3 bits (60), Expect = 5.6
Identities = 5/35 (14%), Positives = 11/35 (31%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
+ + +K K K K + + + D
Sbjct: 73 EAISQFLEKPKPKTASLIKAYKMAQSTPDLDSLSV 107
Score = 26.9 bits (59), Expect = 7.6
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
+ + +K K K K + + PD
Sbjct: 71 TSEAISQFLEKPKPKTASLIKAYKMAQSTPD 101
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 29.0 bits (66), Expect = 6.0
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 174 RSLHDAIMIVRRTIRN---HAVVAGGGAIEMELSKALRD 209
DA+ I + + V+ GGG I +E+++A
Sbjct: 131 DLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAA 169
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C*
1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F*
1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C
1xmo_C* 1xmq_C* 1xnq_C* ...
Length = 239
Score = 28.4 bits (64), Expect = 6.4
Identities = 8/40 (20%), Positives = 20/40 (50%)
Query: 1 VQIYKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEE 40
I+ G+ + R + K +++ ++++ + KKEE
Sbjct: 200 AYIFLGEVIGGQKPKARPELPKAEERPRRRRPAVRVKKEE 239
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_G
Length = 113
Score = 27.3 bits (60), Expect = 6.4
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKK 38
E L K+ + K K+ K
Sbjct: 1 ERLTKEAAAVAEGKSKQDASPKPYA 25
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S-
adenosylmethionine, structural genomics, NPPSFA; 2.10A
{Thermus thermophilus} PDB: 2zie_A* 2zif_A
Length = 297
Score = 28.5 bits (64), Expect = 6.6
Identities = 6/54 (11%), Positives = 23/54 (42%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIH 69
++ + + ++K +K +++ E+ +++ + W + + K H
Sbjct: 163 IKTEIEYILMQRKPGGYRKPTQEQREKSRLPKEDFHRFFRQIWDDIPGESTKDH 216
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A
{Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 27.5 bits (61), Expect = 6.7
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEE----EEEPDEYQKVVDAEWKILYEKLDKIH 69
+E+ K++ + K+ +K + ++KE EE+ +E ++ Q V AE L + ++
Sbjct: 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCD 72
Query: 70 ASGAQ 74
Sbjct: 73 QLIKN 77
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 28.7 bits (65), Expect = 6.9
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 174 RSLHDAIMIVRRTIRN---HAVVAGGGAIEMELSKALRD 209
+ ++ ++ + V G G I +EL++A +
Sbjct: 177 KLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQR 215
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone
methyltransferase, histone-lysine N-methyltransferas
SUV39H1, histone H3, TRI-methylation; 2.20A {Homo
sapiens}
Length = 64
Score = 26.2 bits (58), Expect = 7.2
Identities = 4/24 (16%), Positives = 12/24 (50%)
Query: 13 CEELRKKKKKKKKKKKKKKKKKKK 36
C + K+ K +++ ++ + K
Sbjct: 40 CVRILKQFHKDLERELLRRHHRSK 63
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 28.7 bits (64), Expect = 7.4
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD-EYQKVVDAEWKILYEKLDKIHASG 72
ELRK+K + K K ++E + + + W+ K A G
Sbjct: 157 SELRKRKLLAEVTLKTYWVSKGSAFSTSISKQETELSPEMISSGSWRDRPFKPYNFLAHG 216
Query: 73 AQVVLSKL 80
L
Sbjct: 217 VLPDSGHL 224
>3msv_A Nuclear import adaptor, NRO1; helix repeats, heat repeats,
protein binding; 2.18A {Schizosaccharomyces pombe}
Length = 393
Score = 28.5 bits (62), Expect = 7.7
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
LR KK+++ +K+K++ + + + VD
Sbjct: 9 LRAAASLKKQQQLEKQKQEASYELSGNSSPSKENGSENVDNG 50
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2;
I-BAR, protein binding; 2.25A {Mus musculus}
Length = 222
Score = 28.2 bits (62), Expect = 7.8
Identities = 5/49 (10%), Positives = 19/49 (38%)
Query: 4 YKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
Y+ ++R + + + ++K+ K ++ K+ + +
Sbjct: 124 YEIEYRHRAANLEKCMSELWRMERKRDKNAREMKESVNRLHAQMQAFVS 172
>2pfy_A Putative exported protein; extracytoplasmic solute receptor,
tripartite ATP independent periplasmic transport,
pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Length = 301
Score = 28.5 bits (64), Expect = 7.8
Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 19/82 (23%)
Query: 527 DSVEEYQKVVDAEWKILYEKLDK-------IHASGAQVVLSKLPIGDVATQYFADRDMFC 579
S E +K+ A +L ++LDK Q + +K P+ +A D+
Sbjct: 87 SSFNESEKLWKATRPLLAQRLDKQGIVLVYGSPWPPQGIYTKKPVAALA-------DL-- 137
Query: 580 AG---RVPEEDLKRTMKACGGA 598
G R G
Sbjct: 138 KGTRFRAYSASTSHMAALMGAV 159
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_4
Length = 265
Score = 28.3 bits (62), Expect = 7.8
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKE 39
K KK KK+ +KE
Sbjct: 8 GLKAGGGKKGAKKRTIDPLSRKE 30
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 28.6 bits (65), Expect = 7.9
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 174 RSLHDAIMIVRRTIR-NHAVVAGGGAIEMELSKALRD 209
++ +DA + + + G G I EL++A +
Sbjct: 134 KNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSN 170
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S,
protein-protein complex, RNA-RNA complex, PROT complex,
peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU
SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB:
1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I*
1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I*
1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Length = 348
Score = 28.3 bits (62), Expect = 8.1
Identities = 6/32 (18%), Positives = 16/32 (50%)
Query: 23 KKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVV 54
+ ++K + + K++E + E + Y+ V
Sbjct: 3 AESERKTETIPEWKQEEVDAIVEMIESYESVG 34
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_M
Length = 178
Score = 27.8 bits (62), Expect = 8.2
Identities = 1/34 (2%), Positives = 1/34 (2%)
Query: 10 AHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEE 43
A
Sbjct: 144 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 177
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 28.2 bits (64), Expect = 8.3
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 174 RSLHDAIMIVRRTIRN---HAVVAGGGAIEMELSKALRD 209
R AI + ++T+ + VV G G I +E ++A
Sbjct: 132 RGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAK 170
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone
H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain,
histone deacetylase; HET: M2L; NMR {Saccharomyces
cerevisiae}
Length = 136
Score = 27.4 bits (59), Expect = 8.5
Identities = 1/25 (4%), Positives = 4/25 (16%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKK 38
+ K + +
Sbjct: 112 RLANEAGSTGSAPATGGVXKPHRYR 136
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A
{Drosophila melanogaster} SCOP: a.238.1.1
Length = 244
Score = 27.9 bits (61), Expect = 8.5
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 13 CEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASG 72
+ R + + K+K K K E+ EE Y+ + L+++L ++ S
Sbjct: 145 YDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNT----ELHDELPALYDSR 200
Query: 73 AQVVLSKL 80
+++ L
Sbjct: 201 ILFLVTNL 208
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 28.0 bits (63), Expect = 8.6
Identities = 5/39 (12%), Positives = 12/39 (30%)
Query: 23 KKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKIL 61
K K EE ++ + + +W ++
Sbjct: 242 IAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKVKKWTLM 280
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 27.6 bits (62), Expect = 8.8
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 13 CEELRKKKKKKKKKKKKKKKKKKKK 37
E+RK K+K K KKKKKK K K
Sbjct: 161 VREIRKHKEKMSKDGKKKKKKSKTK 185
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 28.1 bits (62), Expect = 9.0
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEW 58
K+K + + KK++ E+++ + K + EW
Sbjct: 274 KQKLDRCHSAELALNVITKKRKGYEDDDYVSKKSKHEEEEW 314
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 27.6 bits (61), Expect = 9.2
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEE 40
EE K +KK + +++ + ++
Sbjct: 154 EEAVAKAAEKKVVRLTSRQRGRIAAQK 180
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA
segregation, unknown function; HET: ADP; 1.80A
{Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Length = 206
Score = 27.7 bits (62), Expect = 9.4
Identities = 7/53 (13%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 165 AEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKV 217
++ +++T I +R + +++ G E A + L ++
Sbjct: 150 LKESIKDTGVKAFRTA-ITQRQVYVKSILDGDSVFESSDGAAKGEIEILTKEI 201
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 27.7 bits (62), Expect = 9.5
Identities = 3/20 (15%), Positives = 12/20 (60%)
Query: 16 LRKKKKKKKKKKKKKKKKKK 35
L+ ++K+ +++K ++
Sbjct: 179 LQPPRRKEVPRRRKNHRRSG 198
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 27.3 bits (61), Expect = 9.8
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKK 36
E++ +++ +KK + K
Sbjct: 136 REMKIVTERRAEKKADSRVTYSK 158
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.373
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,685,053
Number of extensions: 625736
Number of successful extensions: 6788
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5233
Number of HSP's successfully gapped: 656
Length of query: 632
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 533
Effective length of database: 3,937,614
Effective search space: 2098748262
Effective search space used: 2098748262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.6 bits)