RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17074
(632 letters)
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma
acidophilum, alpha chain [TaxId: 2303]}
Length = 152
Score = 120 bits (303), Expect = 1e-32
Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 3/147 (2%)
Query: 480 VDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAE 539
+ G+ K ++ P KN KIAL++ LE+K A++++ + Q ++ E
Sbjct: 1 MSGIVIDKEKVHSK---MPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQE 57
Query: 540 WKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAV 599
+ ++KI SGA VVL + I DVA Y A ++ RV + D+++ KA G +
Sbjct: 58 TNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKI 117
Query: 600 MTTAHDLNDSVLGTCAVFDERQIGSER 626
+T DL SVLG +ER+IG +R
Sbjct: 118 VTDLDDLTPSVLGEAETVEERKIGDDR 144
Score = 102 bits (255), Expect = 4e-26
Identities = 41/120 (34%), Positives = 63/120 (52%)
Query: 33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
KK + E + + +P + Q ++ E + ++KI SGA VVL + I DVA Y A
Sbjct: 33 IKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAK 92
Query: 93 RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK 152
++ RV + D+++ KA G ++T DL SVLG +ER+IG +R GCK
Sbjct: 93 EGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCK 152
Score = 63.9 bits (155), Expect = 1e-12
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 236 EMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASG 295
P KN KIAL++ LE+K A++++ + Q ++ E + ++KI SG
Sbjct: 13 SKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSG 72
Query: 296 AQVVLSKLPIGDVATQYFADR 316
A VVL + I DVA Y A
Sbjct: 73 ANVVLCQKGIDDVAQHYLAKE 93
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon
Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}
Length = 153
Score = 116 bits (292), Expect = 3e-31
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 3/145 (2%)
Query: 482 GVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWK 541
GV K + PK +N KIAL+N LE+K +A+I + S ++ ++ E K
Sbjct: 2 GVVIDKEVVHPR---MPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEK 58
Query: 542 ILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMT 601
+L + +D I +GA VV + I D+A Y A + RV + D+++ KA G ++T
Sbjct: 59 MLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVT 118
Query: 602 TAHDLNDSVLGTCAVFDERQIGSER 626
DL LG V +ER++ E
Sbjct: 119 NVKDLTPEDLGYAEVVEERKLAGEN 143
Score = 102 bits (255), Expect = 4e-26
Identities = 37/122 (30%), Positives = 60/122 (49%)
Query: 32 KKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFA 91
+ KK + + + PD+ ++ E K+L + +D I +GA VV + I D+A Y A
Sbjct: 31 EVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLA 90
Query: 92 DRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGC 151
+ RV + D+++ KA G ++T DL LG V +ER++ E GC
Sbjct: 91 KYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGC 150
Query: 152 KN 153
KN
Sbjct: 151 KN 152
Score = 62.7 bits (152), Expect = 2e-12
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
PK +N KIAL+N LE+K +A+I + S ++ ++ E K+L + +D I +GA
Sbjct: 14 MPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGAN 73
Query: 298 VVLSKLPIGDVATQYFADR 316
VV + I D+A Y A
Sbjct: 74 VVFVQKGIDDLAQHYLAKY 92
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon
Thermoplasma acidophilum, beta chain [TaxId: 2303]}
Length = 152
Score = 115 bits (290), Expect = 6e-31
Identities = 42/145 (28%), Positives = 77/145 (53%), Gaps = 3/145 (2%)
Query: 482 GVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWK 541
G+ K + G P K+ KIALL+ LE+K + +R++ QK + E
Sbjct: 1 GIIVDKEKVHPG---MPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEEN 57
Query: 542 ILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMT 601
+L E +DKI + GA VV+++ I D+A Y + ++ RV + D+ + KA G ++++
Sbjct: 58 MLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVS 117
Query: 602 TAHDLNDSVLGTCAVFDERQIGSER 626
T +++ S LGT ++ ++G +
Sbjct: 118 TIDEISSSDLGTAERVEQVKVGEDY 142
Score = 98.9 bits (246), Expect = 6e-25
Identities = 36/121 (29%), Positives = 66/121 (54%)
Query: 33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
KK + + E+P QK + E +L E +DKI + GA VV+++ I D+A Y +
Sbjct: 31 IKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSR 90
Query: 93 RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK 152
++ RV + D+ + KA G ++++T +++ S LGT ++ ++G + +GCK
Sbjct: 91 AGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCK 150
Query: 153 N 153
N
Sbjct: 151 N 151
Score = 63.1 bits (153), Expect = 2e-12
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 236 EMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASG 295
P K+ KIALL+ LE+K + +R++ QK + E +L E +DKI + G
Sbjct: 11 PGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVG 70
Query: 296 AQVVLSKLPIGDVATQYFADR 316
A VV+++ I D+A Y +
Sbjct: 71 ANVVITQKGIDDMAQHYLSRA 91
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus),
gamma chain [TaxId: 10090]}
Length = 168
Score = 108 bits (270), Expect = 6e-28
Identities = 38/152 (25%), Positives = 74/152 (48%), Gaps = 4/152 (2%)
Query: 476 DSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKV 535
DS ++ GV K + + KNP+I LL+ LE K +I + E++ ++
Sbjct: 1 DSCVLRGVMINKDVTHPRM---RRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRI 57
Query: 536 VDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKAC 595
+ E + +++ + I VV+++ I D+A Y ++ RV + D R +AC
Sbjct: 58 LQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARAC 117
Query: 596 GGAVMTTAHDLNDSVLGTCA-VFDERQIGSER 626
G +++ +L + +GT A + + ++IG E
Sbjct: 118 GARIVSRPEELREDDVGTGAGLLEIKKIGDEY 149
Score = 99.7 bits (248), Expect = 4e-25
Identities = 33/133 (24%), Positives = 71/133 (53%), Gaps = 1/133 (0%)
Query: 32 KKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFA 91
+ KK + + + E +++ +++ E + +++ + I VV+++ I D+A Y
Sbjct: 36 EYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLM 95
Query: 92 DRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCA-VFDERQIGSERFNVFSG 150
++ RV + D R +ACG +++ +L + +GT A + + ++IG E F +
Sbjct: 96 RANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITD 155
Query: 151 CKNARTCTIIVRG 163
CK+ + CTI++RG
Sbjct: 156 CKDPKACTILLRG 168
Score = 57.0 bits (137), Expect = 4e-10
Identities = 19/78 (24%), Positives = 38/78 (48%)
Query: 239 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV 298
+ KNP+I LL+ LE K +I + E++ +++ E + +++ + I V
Sbjct: 20 RRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDV 79
Query: 299 VLSKLPIGDVATQYFADR 316
V+++ I D+A Y
Sbjct: 80 VITEKGISDLAQHYLMRA 97
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain
{Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
79679]}
Length = 258
Score = 104 bits (259), Expect = 1e-25
Identities = 39/85 (45%), Positives = 59/85 (69%)
Query: 328 ILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATI 387
+++L EGT+ G+ NI A + + + VRTTLGP+GMDK++VD G ++ND ATI
Sbjct: 1 VVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATI 60
Query: 388 MKLLDIVHPAAKTLVDIAKSQDAEI 412
+ +D+ HPAAK +V++AK+QD E
Sbjct: 61 LDKIDLQHPAAKMMVEVAKTQDKEA 85
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 243
Score = 85.9 bits (212), Expect = 2e-19
Identities = 35/71 (49%), Positives = 53/71 (74%)
Query: 341 KPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKT 400
K + NI A A+ ++VR++LGPRGMDK++VD G I+NDG TI+K +D+ HPAAK
Sbjct: 1 KDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKM 60
Query: 401 LVDIAKSQDAE 411
+V+++K+QD+
Sbjct: 61 MVEVSKTQDSF 71
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
2303]}
Length = 245
Score = 85.2 bits (210), Expect = 3e-19
Identities = 41/72 (56%), Positives = 55/72 (76%)
Query: 338 SQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPA 397
QGK +NI A +A+ DAVRTTLGP+GMDK++VD G ISNDGATI+K +D+ HP
Sbjct: 2 EQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPT 61
Query: 398 AKTLVDIAKSQD 409
AK +V+++K+QD
Sbjct: 62 AKMIVEVSKAQD 73
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 107
Score = 72.2 bits (177), Expect = 4e-16
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 421 RGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL------LPLNMIGIKKVAGGAL 474
+ LL K A T+L+SK K +++ +AV S+ +L + + I + K GGA+
Sbjct: 5 KALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAI 64
Query: 475 EDSLLVDGVS---FKKTFAYAGFEMQPKTYKNPKIALLNIELE 514
+D+ L++ + + EM ++ + + ++ LE
Sbjct: 65 DDTQLINKAVSILVRGETEHVVDEM-ERSITD-SLHVVASALE 105
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain
{Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
79679]}
Length = 107
Score = 71.5 bits (175), Expect = 7e-16
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 13/107 (12%)
Query: 421 RGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD------LLPLNMIGIKKVAGGAL 474
L K AAT+++ K K +K+ V+AV + + ++ L+ I +K AG +
Sbjct: 6 EETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGV 65
Query: 475 EDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELK-AERD 520
E+S LV V+ + AL + +K D
Sbjct: 66 EESELVKAVTILIRGG------TEHVIDEVERALEDAVKVVKDVMED 106
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain
{Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
2303]}
Length = 105
Score = 66.1 bits (161), Expect = 5e-14
Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 13/107 (12%)
Query: 421 RGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL------LPLNMIGIKKVAGGAL 474
L K A TALS K F + +VV AV ++ ++ + I + K GG++
Sbjct: 3 DATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSV 62
Query: 475 EDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELEL-KAERD 520
D+ + VS + AL + + + D
Sbjct: 63 NDTQFISAVSILIRGG------TDHVVSEVERALNDAIRVVAITKED 103
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus
denitrificans [TaxId: 266]}
Length = 252
Score = 59.0 bits (142), Expect = 2e-10
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 346 SNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHP----AAKTL 401
+ + DAV+ TLGP+G + +I G I+ DG ++ K +++ A+ +
Sbjct: 14 RMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMV 73
Query: 402 VDIAKSQDAE 411
++A + E
Sbjct: 74 REVASRTNDE 83
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia
coli [TaxId: 562]}
Length = 252
Score = 58.6 bits (141), Expect = 4e-10
Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 346 SNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHP----AAKTL 401
+ + DAV+ TLGP+G + ++ G TI+ DG ++ + +++ A+ +
Sbjct: 14 KMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMV 73
Query: 402 VDIAKSQDAE 411
++A +
Sbjct: 74 KEVASKANDA 83
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus
thermophilus [TaxId: 274]}
Length = 255
Score = 53.8 bits (128), Expect = 2e-08
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 352 QAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIV----HPAAKTLVDIAKS 407
AV +AV+ TLGPRG + ++ + G TI+ DG T+ K +++ + A+ L ++A
Sbjct: 19 NAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASK 78
Query: 408 QDAE 411
+
Sbjct: 79 TNDV 82
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 35.8 bits (83), Expect = 0.009
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
K + + +K+ K++K K KEE E+ +
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 33.9 bits (78), Expect = 0.042
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
+ + + +K+ K++K K K++ E+ +E
Sbjct: 109 FKAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 33.5 bits (77), Expect = 0.056
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
K + + +K+ K++K K K+E E+ +E
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 32.4 bits (74), Expect = 0.13
Identities = 8/32 (25%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 10 AHFCEELRKKKKKKKKKKKKKKKKKKKKKEEE 41
+F + + +K+ K++K K K++ +K +E
Sbjct: 107 QYF-KAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 32.0 bits (73), Expect = 0.16
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEE 45
K + + +K+ K++K K K++ E+ +E
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 31.6 bits (72), Expect = 0.23
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 22 KKKKKKKKKKKKKKKKKEEEEEEEEPDEYQ 51
K + + +K+ K++K K +EE E+ EY
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKEYG 139
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 36.1 bits (83), Expect = 0.012
Identities = 8/37 (21%), Positives = 22/37 (59%)
Query: 10 AHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
+F + K+ +K+++ ++K ++ K +E+ E+E
Sbjct: 294 HNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKE 330
Score = 30.7 bits (69), Expect = 0.46
Identities = 10/36 (27%), Positives = 24/36 (66%)
Query: 7 QFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEE 42
FR F + +++ +K+++ ++K ++ K K+K E+E
Sbjct: 295 NFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKE 330
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 35.5 bits (82), Expect = 0.012
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
+ +K++KK+ ++KK+ + E E+ EE
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 34.3 bits (79), Expect = 0.031
Identities = 8/29 (27%), Positives = 21/29 (72%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
+ +K++KK+ ++KK+ + ++E+ EE+
Sbjct: 101 FQLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 33.1 bits (76), Expect = 0.059
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
+ +K++KK+ ++KK+ + E E+ EE+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 32.4 bits (74), Expect = 0.10
Identities = 8/32 (25%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 10 AHFCEELRKKKKKKKKKKKKKKKKKKKKKEEE 41
+F + +++KK+ ++KK+ + +++K EE+
Sbjct: 99 DYF-QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 32.4 bits (74), Expect = 0.12
Identities = 8/28 (28%), Positives = 20/28 (71%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEE 45
+ +K++KK+ ++KK+ + + E+ EE+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 30.8 bits (70), Expect = 0.38
Identities = 8/30 (26%), Positives = 20/30 (66%)
Query: 22 KKKKKKKKKKKKKKKKKEEEEEEEEPDEYQ 51
+ +K++KK+ ++KK+ E E+ ++Y+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDYK 131
>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
knowlesi [TaxId: 5850]}
Length = 294
Score = 34.6 bits (79), Expect = 0.024
Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 7 QFRAHFCEELRKKKKK-KKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVD---AEWKILY 62
++ + EL K++ K +K K + Y + + +W +L
Sbjct: 180 EWGRDYMSELPKEQGKLNEKCASKLYYNNMAICMLPLCHDACKSYDQWITRKKKQWDVLS 239
Query: 63 EKLDKIH 69
K +
Sbjct: 240 TKFSSVK 246
Score = 30.8 bits (69), Expect = 0.45
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
+ + + +KKK+ K KK +K E + K
Sbjct: 223 SYDQWITRKKKQWDVLSTKFSSVKKTQKIGTENIATAYDILK 264
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 32.5 bits (73), Expect = 0.035
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 4 YKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
+K +L K+ K+K ++ ++K++ EE E+
Sbjct: 63 FKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELEK 103
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 32.1 bits (73), Expect = 0.067
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDA 56
K K K K +++ K + + +K E +E+ EY +V+
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKM 40
Score = 28.7 bits (64), Expect = 1.2
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEE 43
K +++ K + + +K++ KE+ +E
Sbjct: 7 GGKNRRRGKNENESEKRELVFKEDGQE 33
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 31.8 bits (72), Expect = 0.10
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
+ E+++ ++ K K++K + + EEE Q+
Sbjct: 74 SYISEVKEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQ 115
>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 104
Score = 30.5 bits (69), Expect = 0.15
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 5 KGQFRAHFCEELRKKKKKKKKKKKKKKKKKK 35
K + ++ + +++K+++KK KKKKKK
Sbjct: 74 KTKLMIELARKIAEIREQKREQKKDKKKKKK 104
Score = 26.2 bits (58), Expect = 5.6
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKE 39
EL +K + +++K+++KK KKKKK+
Sbjct: 79 IELARKIAEIREQKREQKKDKKKKKK 104
>d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission
yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 108
Score = 29.6 bits (66), Expect = 0.32
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
+ + +K K K K + + PD
Sbjct: 71 SEAISQFLEKPKPKTASLIKAYKMAQSTPD 100
Score = 28.5 bits (63), Expect = 0.99
Identities = 5/31 (16%), Positives = 10/31 (32%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
+ +K K K K + + + D
Sbjct: 73 AISQFLEKPKPKTASLIKAYKMAQSTPDLDS 103
Score = 27.7 bits (61), Expect = 1.6
Identities = 5/33 (15%), Positives = 10/33 (30%)
Query: 13 CEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEE 45
L + + +K K K K + +
Sbjct: 66 LTPLTSEAISQFLEKPKPKTASLIKAYKMAQST 98
Score = 26.2 bits (57), Expect = 4.9
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
E + +K K K K K + + +
Sbjct: 68 PLTSEAISQFLEKPKPKTASLIKAYKMAQSTPDLDS 103
>d1zroa1 a.264.1.1 (A:8-282) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 275
Score = 30.8 bits (69), Expect = 0.43
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 13 CEELRKKKKKKKK--KKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDK 67
C + R + K K+ + +K +E E + DA+ +L D
Sbjct: 212 CMKYRDWIIRSKFEWHTLSKEYETQKVPKENAENYLIKISENKNDAKVSLLLNNCDA 268
Score = 30.0 bits (67), Expect = 0.84
Identities = 7/60 (11%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 11 HFCEELRKKKK--KKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKI 68
+ + + + K K+ + +K K+ E + ++ V + K
Sbjct: 214 KYRDWIIRSKFEWHTLSKEYETQKVPKENAENYLIKISENKNDAKVSLLLNNCDAEYSKY 273
>d1l4sa_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue)
{Escherichia coli [TaxId: 562]}
Length = 112
Score = 29.1 bits (65), Expect = 0.52
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEE 44
+L K + K + ++ K EE EEE
Sbjct: 79 KLERQLNKLQHKGEARRAATSVKDANFVEEVEEE 112
Score = 27.2 bits (60), Expect = 3.1
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
K + K + ++ K EE EEE
Sbjct: 85 NKLQHKGEARRAATSVKDANFVEEVEEE 112
Score = 26.8 bits (59), Expect = 4.1
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 22 KKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
K + K + ++ K+ EE +E
Sbjct: 85 NKLQHKGEARRAATSVKDANFVEEVEEE 112
Score = 26.8 bits (59), Expect = 4.2
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEE 45
K + K + ++ K EE EEE
Sbjct: 85 NKLQHKGEARRAATSVKDANFVEEVEEE 112
Score = 26.0 bits (57), Expect = 6.1
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
R+ K + K + ++ K EE EE
Sbjct: 82 RQLNKLQHKGEARRAATSVKDANFVEEVEE 111
>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus
thermophilus [TaxId: 274]}
Length = 138
Score = 29.2 bits (65), Expect = 0.67
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 15 ELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
L ++ ++K + +K+ + + E +EE
Sbjct: 104 NLSDREIRRKLRADRKRIDQDRAAERAAKEEAQ 136
Score = 26.9 bits (59), Expect = 4.4
Identities = 4/37 (10%), Positives = 16/37 (43%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
++ ++K + +K+ + + + +EE +
Sbjct: 101 FIRNLSDREIRRKLRADRKRIDQDRAAERAAKEEAQK 137
Score = 26.9 bits (59), Expect = 5.1
Identities = 4/33 (12%), Positives = 15/33 (45%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
+R ++ ++K + +K+ + E + +
Sbjct: 102 IRNLSDREIRRKLRADRKRIDQDRAAERAAKEE 134
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 27.5 bits (61), Expect = 1.5
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKKE 39
L++ + + K+ +K+E
Sbjct: 78 LKEVVPEGYEMKRVGDYYVFEKRE 101
Score = 27.1 bits (60), Expect = 2.4
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 20 KKKKKKKKKKKKKKKKKKKEEEE 42
K+ + + K+ E+ E
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 26.7 bits (59), Expect = 3.0
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEE 40
K+ + + K+ +K E
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 26.7 bits (59), Expect = 3.3
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 21 KKKKKKKKKKKKKKKKKKEEEEE 43
K+ + + K+ E+ E
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 26.3 bits (58), Expect = 4.4
Identities = 3/23 (13%), Positives = 11/23 (47%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKK 36
+E+ + + K+ +K++
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 25.9 bits (57), Expect = 5.9
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 22 KKKKKKKKKKKKKKKKKEEEEEE 44
K+ + + K+ E+ E
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 25.6 bits (56), Expect = 8.5
Identities = 3/23 (13%), Positives = 9/23 (39%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEE 41
K+ + + K+ ++ E
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
>d1kcfa2 c.55.3.7 (A:39-256) Mitochondrial resolvase ydc2 catalytic
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 218
Score = 28.5 bits (63), Expect = 1.9
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 17 RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKI 68
K KKK + + K+ + ++ E +E +W K
Sbjct: 140 VLNTKASFSKKKSRVQMVKELIDGQKILFENEEA----LYKWNNGSRVEFKK 187
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 237
Score = 28.5 bits (63), Expect = 1.9
Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 7 QFRAHFCEELRKKKKKKKKK--KKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEK 64
E++ + KK ++ KKK++ + +EE + + D +I
Sbjct: 135 NLHDKDLREIQSALQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESS 194
Query: 65 LDKIHASGAQVV 76
+ + + V
Sbjct: 195 MFNLLEMDIEQV 206
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 28.5 bits (63), Expect = 2.3
Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKI 68
+ E + KKK++ K+ K+ ++ +K + E + + + + K EK +
Sbjct: 242 SYKEWISKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYL----KKYSEKCSNL 295
Score = 28.1 bits (62), Expect = 3.5
Identities = 9/63 (14%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 7 QFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLD 66
++ +C++ K + K + K+K + K + +E +K E+ ++
Sbjct: 206 EWGDDYCQDKTKMIETLKVECKEKPCEDDNCKRKCNSYKEWISKKKE---EYNKQAKQYQ 262
Query: 67 KIH 69
+
Sbjct: 263 EYQ 265
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 337
Score = 28.5 bits (63), Expect = 2.6
Identities = 3/45 (6%), Positives = 12/45 (26%)
Query: 1 VQIYKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEE 45
+ + E R + +++ + E + +
Sbjct: 95 RPLTEVWTDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGD 139
>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II,
PAC) {Streptococcus mutans [TaxId: 1309]}
Length = 377
Score = 28.5 bits (63), Expect = 2.8
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 23 KKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
+K K K + E+ + E +K
Sbjct: 1 QKDLADYPVKLKAYEDEQASIKAALAELEK 30
>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase
{Pseudomonas putida [TaxId: 303]}
Length = 185
Score = 27.8 bits (60), Expect = 3.0
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 188 RNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFH 228
++ V+ G G +E++ LR G + D +
Sbjct: 3 NDNVVIVGTGLAGVEVAFGLRA---SGWEGNIRLVGDATVI 40
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 26.3 bits (58), Expect = 4.1
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKL 65
E +K K K + K + EE+ + DE + + + E E L
Sbjct: 46 EIYYFRKTVGYKVPKNTELGSDATKVQREEQRKIDEAEPLTEEE-IQEKENL 96
>d1q4ua_ d.38.1.5 (A:) 4-hydroxybenzoyl CoA thioesterase
{Arthrobacter sp., strain su [TaxId: 1667]}
Length = 140
Score = 27.1 bits (59), Expect = 4.3
Identities = 5/41 (12%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 232 PDGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEE 272
PD P Y+ + ++ + + A ++ +
Sbjct: 6 PDVASHYPVAYEQTLDGTVGFVID-EMTPERATASVEVTDT 45
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 26.0 bits (57), Expect = 4.8
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 17 RKKKKKKKKKKKKKKKKKK 35
R+ KK+ +KKK K+
Sbjct: 5 REPKKRTTRKKKDPNAPKR 23
Score = 26.0 bits (57), Expect = 5.4
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 18 KKKKKKKKKKKKKKKKKKKKK 38
++ KK+ +KKK K+
Sbjct: 3 TPREPKKRTTRKKKDPNAPKR 23
Score = 25.2 bits (55), Expect = 9.9
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 18 KKKKKKKKKKKKKKKKKKKKK 38
++ KK+ +KKK K
Sbjct: 2 VTPREPKKRTTRKKKDPNAPK 22
>d1je5a_ b.40.4.7 (A:) gp2.5 {Bacteriophage T7 [TaxId: 10760]}
Length = 197
Score = 26.9 bits (59), Expect = 5.7
Identities = 4/32 (12%), Positives = 10/32 (31%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
++ + + KK + E + P
Sbjct: 66 YAAAVEEYEANPPAVARGKKPLKPYEGDMPFF 97
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 27.0 bits (59), Expect = 5.9
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 12 FCEELRKKKKKKKKKKKKKKKKKKKKK 38
F E L K K++ + + + + +K+
Sbjct: 155 FFERLPKPKREAFLEANRAELVRFQKE 181
Score = 26.6 bits (58), Expect = 7.0
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKE 39
K K++ + + + + +KE
Sbjct: 160 PKPKREAFLEANRAELVRFQKE 181
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 86
Score = 25.6 bits (56), Expect = 6.0
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 8/38 (21%)
Query: 9 RAHFCEELRKKKKK--------KKKKKKKKKKKKKKKK 38
+A + E RK+++ + KKKK+K++K
Sbjct: 49 QAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 86
Score = 25.6 bits (56), Expect = 7.0
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 7 QFRAHFCEELRKKKKKKKKKKKKKKKKKK 35
+ R + + KKKK+K++K
Sbjct: 58 KERQLHMQLYPGWSARDNYGKKKKRKREK 86
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 25.5 bits (56), Expect = 6.0
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 18 KKKKKKKKKKKKKKKKKK 35
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 25.5 bits (56), Expect = 6.0
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 19 KKKKKKKKKKKKKKKKKK 36
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 25.5 bits (56), Expect = 6.0
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 20 KKKKKKKKKKKKKKKKKK 37
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 25.5 bits (56), Expect = 6.0
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 21 KKKKKKKKKKKKKKKKKK 38
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 25.5 bits (56), Expect = 6.6
Identities = 4/17 (23%), Positives = 5/17 (29%)
Query: 17 RKKKKKKKKKKKKKKKK 33
+K KKK
Sbjct: 3 SGSSGRKPPPKKKMTGT 19
>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex
aeolicus [TaxId: 63363]}
Length = 184
Score = 26.8 bits (59), Expect = 6.3
Identities = 8/46 (17%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEK 64
++ K+ ++ + + +KK+ E ++ D+Y ++ K++ K
Sbjct: 135 REAKEMIEELEGISEDEKKRALERLQKLTDKYIDEIN---KLMEAK 177
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 96
Score = 25.8 bits (57), Expect = 6.4
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 14 EELRKKKKKKKKKKKKKKKKKKK 36
EE++KK ++ + K+K K +
Sbjct: 70 EEVKKKLEESNLTEYMKEKIKIR 92
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 27.2 bits (59), Expect = 6.6
Identities = 7/51 (13%), Positives = 15/51 (29%)
Query: 11 HFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKIL 61
E+ K K K+ K ++ + E + + E +
Sbjct: 133 FLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNENDVW 183
>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase
{Pyrococcus furiosus [TaxId: 2261]}
Length = 167
Score = 26.6 bits (57), Expect = 6.9
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 189 NHAVVAGGGAIEMELSKALRD 209
+ V+ G G EL+K L
Sbjct: 1 SKVVIVGNGPGGFELAKQLSQ 21
>d1giqa1 d.166.1.1 (A:3-209) Enzymatic component (Ia) of
iota-toxin {Clostridium perfringens [TaxId: 1502]}
Length = 207
Score = 26.7 bits (59), Expect = 7.0
Identities = 9/46 (19%), Positives = 21/46 (45%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYE 63
K K+ + +KK+ ++ +K + E+E + Y+K +
Sbjct: 8 LKDKENAIQWEKKEAERVEKNLDTLEKEALELYKKDSEQISNYSQT 53
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 26.9 bits (59), Expect = 7.2
Identities = 10/70 (14%), Positives = 30/70 (42%), Gaps = 17/70 (24%)
Query: 16 LRKKKKKKKKKKKKKKKKKKKKK-----------------EEEEEEEEPDEYQKVVDAEW 58
+ + +K++ K K+ + +K E+++EE ++ ++ + ++
Sbjct: 214 VTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDPPKIQNEDQDEELEEDLEERLALDY 273
Query: 59 KILYEKLDKI 68
I + DK+
Sbjct: 274 SIGEQLKDKL 283
>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1,
MRG15 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 25.3 bits (55), Expect = 7.4
Identities = 3/24 (12%), Positives = 14/24 (58%)
Query: 12 FCEELRKKKKKKKKKKKKKKKKKK 35
+ + +K+++ +K +++ + K
Sbjct: 60 YVDTNLQKQRELQKANQEQYAEGK 83
>d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase,
PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}
Length = 447
Score = 26.9 bits (59), Expect = 8.1
Identities = 7/64 (10%), Positives = 16/64 (25%), Gaps = 16/64 (25%)
Query: 17 RKKKKKKKKKKKKKKKKKK---------------KKKEEEEEEEEPDEYQKVVDAEWKIL 61
R + K + K + E+ + + +D +K
Sbjct: 319 RLAAQGKNPFQLDSKAPDGSVEEFLMAQNRFAVLDRSFPEDAKRLRAQVAHELDVRFK-E 377
Query: 62 YEKL 65
E +
Sbjct: 378 LEHM 381
>d1rq2a2 d.79.2.1 (A:206-312) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 107
Score = 25.6 bits (56), Expect = 8.3
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 9/104 (8%)
Query: 105 DLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGG 164
D+K M G A+M + A E I S + A+ + + GG
Sbjct: 5 DVKGIMSGAGTALMGIGSARGEGRSLKAA---EIAINSPLLEA--SMEGAQGVLMSIAGG 59
Query: 165 AEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALR 208
++ L E ++A +V+ A + G I+ L +R
Sbjct: 60 SDLGLFEI----NEAASLVQDAAHPDANIIFGTVIDDSLGDEVR 99
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 109
Score = 25.5 bits (56), Expect = 8.6
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 29 KKKKKKKKKKEEEEEEEEPDE 49
+KK E E+ +
Sbjct: 82 VLPYNTLRKKGEVEQPGDTQV 102
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.373
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,308,674
Number of extensions: 113875
Number of successful extensions: 1309
Number of sequences better than 10.0: 1
Number of HSP's gapped: 980
Number of HSP's successfully gapped: 160
Length of query: 632
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 541
Effective length of database: 1,158,166
Effective search space: 626567806
Effective search space used: 626567806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.6 bits)