Query psy17076
Match_columns 71
No_of_seqs 104 out of 667
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 21:16:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17076.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17076hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11573 hypothetical protein; 99.5 1.2E-14 2.5E-19 106.0 3.5 64 3-71 157-220 (413)
2 COG1253 TlyC Hemolysins and re 99.5 5.5E-14 1.2E-18 102.5 5.1 60 11-71 180-239 (429)
3 TIGR03520 GldE gliding motilit 99.5 5.3E-14 1.1E-18 102.3 4.2 65 3-71 160-224 (408)
4 PRK15094 magnesium/cobalt effl 99.4 1E-13 2.3E-18 97.2 4.3 66 3-71 35-100 (292)
5 COG4535 CorC Putative Mg2+ and 99.3 3.6E-13 7.9E-18 93.9 0.8 62 9-71 39-100 (293)
6 COG4536 CorB Putative Mg2+ and 99.3 1.5E-12 3.3E-17 95.0 2.7 67 2-71 167-233 (423)
7 KOG2118|consensus 98.8 1.2E-09 2.6E-14 81.8 0.4 70 2-71 168-238 (498)
8 TIGR00400 mgtE Mg2+ transporte 96.9 0.0011 2.3E-08 49.0 3.8 48 18-68 112-159 (449)
9 PF00571 CBS: CBS domain CBS d 95.2 0.01 2.2E-07 31.0 1.1 30 39-71 1-30 (57)
10 TIGR01302 IMP_dehydrog inosine 93.0 0.13 2.9E-06 38.2 3.6 52 12-71 55-111 (450)
11 PRK10892 D-arabinose 5-phospha 88.1 0.4 8.6E-06 33.6 2.1 35 35-70 200-234 (326)
12 cd04604 CBS_pair_KpsF_GutQ_ass 85.3 0.97 2.1E-05 25.6 2.4 53 15-70 36-89 (114)
13 PRK07107 inosine 5-monophospha 84.0 0.68 1.5E-05 35.2 1.7 36 34-70 158-193 (502)
14 cd04801 CBS_pair_M50_like This 83.4 1 2.3E-05 25.8 2.0 52 16-70 37-89 (114)
15 cd04597 CBS_pair_DRTGG_assoc2 82.8 1.3 2.9E-05 26.1 2.4 53 15-71 29-89 (113)
16 PLN02274 inosine-5'-monophosph 81.6 1.1 2.3E-05 34.2 2.0 49 17-70 147-195 (505)
17 COG4109 Predicted transcriptio 81.3 0.96 2.1E-05 33.9 1.6 46 25-71 171-221 (432)
18 PTZ00314 inosine-5'-monophosph 81.3 1 2.2E-05 34.2 1.7 35 35-70 157-191 (495)
19 cd04623 CBS_pair_10 The CBS do 80.3 1.5 3.3E-05 24.7 2.0 52 16-70 36-89 (113)
20 PRK10892 D-arabinose 5-phospha 79.3 1.4 3E-05 30.8 1.8 50 15-70 246-299 (326)
21 cd04617 CBS_pair_4 The CBS dom 79.0 1.6 3.5E-05 25.3 1.8 51 17-70 37-90 (118)
22 cd04613 CBS_pair_SpoIVFB_EriC_ 77.7 1.9 4.2E-05 24.3 1.9 52 16-70 36-88 (114)
23 COG2239 MgtE Mg/Co/Ni transpor 77.2 4.5 9.8E-05 30.6 4.1 50 18-70 113-162 (451)
24 TIGR01137 cysta_beta cystathio 76.6 1.5 3.2E-05 32.0 1.4 38 28-70 328-365 (454)
25 cd04802 CBS_pair_3 The CBS dom 76.0 2.6 5.5E-05 23.9 2.1 34 34-70 55-88 (112)
26 cd04592 CBS_pair_EriC_assoc_eu 74.9 2.2 4.8E-05 26.2 1.7 31 39-70 71-108 (133)
27 PRK05567 inosine 5'-monophosph 74.6 4.5 9.8E-05 30.4 3.5 51 13-71 63-118 (486)
28 cd04603 CBS_pair_KefB_assoc Th 74.3 3.2 6.8E-05 23.8 2.2 49 17-70 37-86 (111)
29 PRK11543 gutQ D-arabinose 5-ph 74.3 1.3 2.8E-05 30.8 0.5 34 36-70 196-229 (321)
30 cd04585 CBS_pair_ACT_assoc2 Th 73.0 2.7 5.9E-05 23.9 1.7 33 35-70 65-97 (122)
31 cd04584 CBS_pair_ACT_assoc Thi 72.3 2.5 5.4E-05 24.2 1.4 35 33-70 63-97 (121)
32 cd04621 CBS_pair_8 The CBS dom 70.4 3.5 7.6E-05 24.9 1.8 32 36-70 80-111 (135)
33 cd04589 CBS_pair_CAP-ED_DUF294 69.4 3.7 8.1E-05 23.2 1.7 52 14-70 33-87 (111)
34 cd04630 CBS_pair_17 The CBS do 67.6 5.6 0.00012 22.7 2.2 49 17-70 38-90 (114)
35 cd04594 CBS_pair_EriC_assoc_ar 67.3 5.8 0.00013 22.3 2.2 31 37-70 50-80 (104)
36 cd04625 CBS_pair_12 The CBS do 67.0 4.4 9.6E-05 22.9 1.7 49 17-70 36-88 (112)
37 cd04622 CBS_pair_9 The CBS dom 66.2 5.6 0.00012 22.4 2.0 51 17-70 36-88 (113)
38 cd04615 CBS_pair_2 The CBS dom 65.9 5 0.00011 22.7 1.8 52 15-70 35-88 (113)
39 cd04587 CBS_pair_CAP-ED_DUF294 65.1 7.3 0.00016 21.9 2.4 51 17-70 36-88 (113)
40 cd04632 CBS_pair_19 The CBS do 64.4 3.9 8.5E-05 23.9 1.1 34 34-70 68-101 (128)
41 cd04582 CBS_pair_ABC_OpuCA_ass 63.0 10 0.00022 21.1 2.6 47 15-70 35-81 (106)
42 cd04595 CBS_pair_DHH_polyA_Pol 62.8 8.7 0.00019 21.6 2.4 51 16-70 36-86 (110)
43 cd04610 CBS_pair_ParBc_assoc T 62.4 5.9 0.00013 22.0 1.6 32 36-70 51-82 (107)
44 cd04643 CBS_pair_30 The CBS do 62.3 4.1 8.9E-05 23.1 0.9 32 36-70 62-93 (116)
45 cd04640 CBS_pair_27 The CBS do 62.1 3.8 8.3E-05 24.0 0.8 36 34-70 61-100 (126)
46 PRK01862 putative voltage-gate 59.9 4.3 9.4E-05 30.8 0.9 34 34-70 444-477 (574)
47 cd04633 CBS_pair_20 The CBS do 59.2 6.5 0.00014 22.5 1.4 34 34-70 64-97 (121)
48 cd04636 CBS_pair_23 The CBS do 58.9 7.1 0.00015 23.0 1.6 30 38-70 79-108 (132)
49 cd04599 CBS_pair_GGDEF_assoc2 58.6 7.5 0.00016 21.5 1.6 34 35-71 49-82 (105)
50 cd04601 CBS_pair_IMPDH This cd 56.1 9.8 0.00021 21.2 1.8 33 36-71 53-86 (110)
51 cd04629 CBS_pair_16 The CBS do 54.8 9.1 0.0002 21.5 1.5 52 16-70 36-90 (114)
52 cd04586 CBS_pair_BON_assoc Thi 54.8 8.8 0.00019 22.6 1.5 34 34-70 78-111 (135)
53 COG2524 Predicted transcriptio 54.6 6.6 0.00014 28.3 1.0 33 35-70 232-264 (294)
54 cd04596 CBS_pair_DRTGG_assoc T 54.2 9.7 0.00021 21.4 1.6 33 35-70 51-83 (108)
55 PRK14869 putative manganese-de 53.8 9.9 0.00022 28.6 1.9 34 36-71 245-278 (546)
56 COG0517 FOG: CBS domain [Gener 53.7 24 0.00052 19.7 3.2 47 17-68 42-90 (117)
57 cd04607 CBS_pair_NTP_transfera 52.4 12 0.00027 21.1 1.8 50 16-70 37-88 (113)
58 cd04598 CBS_pair_GGDEF_assoc T 51.4 12 0.00027 21.2 1.7 33 35-70 59-91 (119)
59 cd04626 CBS_pair_13 The CBS do 51.1 13 0.00028 20.9 1.8 32 36-70 56-87 (111)
60 cd04631 CBS_pair_18 The CBS do 50.6 9.1 0.0002 22.0 1.1 32 36-70 69-100 (125)
61 cd04619 CBS_pair_6 The CBS dom 50.5 12 0.00026 21.3 1.6 50 16-70 36-89 (114)
62 TIGR00400 mgtE Mg2+ transporte 50.3 10 0.00023 28.1 1.5 33 35-70 193-225 (449)
63 COG3448 CBS-domain-containing 50.0 9.1 0.0002 28.3 1.2 35 33-70 241-275 (382)
64 cd04593 CBS_pair_EriC_assoc_ba 49.3 18 0.00039 20.5 2.2 32 36-70 57-88 (115)
65 cd07178 terB_like_YebE telluri 49.3 8.8 0.00019 22.8 0.9 26 6-33 4-29 (95)
66 cd04602 CBS_pair_IMPDH_2 This 49.2 13 0.00029 21.1 1.6 34 36-70 56-89 (114)
67 cd04800 CBS_pair_CAP-ED_DUF294 49.1 13 0.00029 20.7 1.6 32 36-70 56-87 (111)
68 cd04611 CBS_pair_PAS_GGDEF_DUF 48.8 14 0.00031 20.5 1.7 33 35-70 54-86 (111)
69 cd04634 CBS_pair_21 The CBS do 48.2 11 0.00025 22.7 1.3 33 35-70 87-119 (143)
70 TIGR01302 IMP_dehydrog inosine 48.2 12 0.00026 27.9 1.6 34 35-70 141-174 (450)
71 cd04600 CBS_pair_HPP_assoc Thi 47.8 14 0.00031 21.0 1.6 33 35-70 67-99 (124)
72 cd04803 CBS_pair_15 The CBS do 47.6 16 0.00034 20.8 1.8 33 35-70 65-97 (122)
73 PRK14869 putative manganese-de 46.7 12 0.00025 28.3 1.3 31 37-70 68-98 (546)
74 TIGR00393 kpsF KpsF/GutQ famil 44.4 15 0.00034 24.6 1.6 33 35-70 218-250 (268)
75 COG2524 Predicted transcriptio 43.1 11 0.00025 27.1 0.8 40 28-70 163-202 (294)
76 cd04639 CBS_pair_26 The CBS do 42.9 18 0.00039 20.2 1.5 33 35-70 54-86 (111)
77 cd04635 CBS_pair_22 The CBS do 41.3 21 0.00046 20.2 1.7 33 35-70 65-97 (122)
78 cd04583 CBS_pair_ABC_OpuCA_ass 40.6 24 0.00052 19.5 1.8 47 17-70 38-84 (109)
79 PF08899 DUF1844: Domain of un 39.8 30 0.00064 20.1 2.1 17 16-32 51-67 (74)
80 PF14044 NETI: NETI protein 39.2 30 0.00066 19.2 1.9 21 50-71 2-22 (57)
81 PF04545 Sigma70_r4: Sigma-70, 38.5 25 0.00054 17.8 1.5 23 19-42 4-26 (50)
82 TIGR01303 IMP_DH_rel_1 IMP deh 38.2 22 0.00047 27.0 1.6 32 36-70 145-176 (475)
83 PRK07807 inosine 5-monophospha 38.0 23 0.0005 26.9 1.8 32 36-70 147-178 (479)
84 KOG2550|consensus 37.1 23 0.00049 27.3 1.6 42 18-66 156-197 (503)
85 cd04612 CBS_pair_SpoIVFB_EriC_ 36.4 38 0.00083 18.7 2.2 30 38-70 57-86 (111)
86 cd04606 CBS_pair_Mg_transporte 35.7 26 0.00057 19.6 1.4 46 17-70 38-83 (109)
87 cd04605 CBS_pair_MET2_assoc Th 35.3 36 0.00078 18.9 2.0 49 16-70 37-85 (110)
88 cd04608 CBS_pair_PALP_assoc Th 34.9 15 0.00033 21.6 0.4 45 17-66 38-85 (124)
89 cd04618 CBS_pair_5 The CBS dom 34.6 53 0.0011 18.5 2.6 23 47-70 1-23 (98)
90 cd04590 CBS_pair_CorC_HlyC_ass 33.7 51 0.0011 18.2 2.5 23 47-70 1-23 (111)
91 PRK05567 inosine 5'-monophosph 31.8 35 0.00075 25.7 1.9 33 36-70 146-178 (486)
92 cd04620 CBS_pair_7 The CBS dom 28.8 59 0.0013 18.2 2.2 51 17-70 37-90 (115)
93 cd04624 CBS_pair_11 The CBS do 27.8 46 0.00099 18.5 1.6 49 17-70 37-87 (112)
94 cd04641 CBS_pair_28 The CBS do 27.4 72 0.0016 18.1 2.4 22 48-70 2-23 (120)
95 PF04504 DUF573: Protein of un 27.0 28 0.00061 20.8 0.6 19 21-39 9-27 (98)
96 cd04609 CBS_pair_PALP_assoc2 T 27.0 41 0.00089 18.4 1.2 30 36-68 56-85 (110)
97 PF12426 DUF3674: RNA dependen 26.7 54 0.0012 17.0 1.5 36 20-59 2-37 (41)
98 PRK01862 putative voltage-gate 26.4 80 0.0017 24.1 3.0 33 35-70 510-542 (574)
99 smart00116 CBS Domain in cysta 22.8 89 0.0019 13.8 2.2 21 49-70 2-22 (49)
100 PF06107 DUF951: Bacterial pro 22.1 32 0.00069 19.1 0.1 9 40-48 39-47 (57)
101 KOG0474|consensus 21.9 53 0.0011 26.7 1.3 35 34-71 579-613 (762)
102 cd04627 CBS_pair_14 The CBS do 21.8 1E+02 0.0022 17.5 2.3 27 41-70 72-98 (123)
103 PF02318 FYVE_2: FYVE-type zin 21.3 60 0.0013 19.7 1.3 15 19-33 2-16 (118)
104 cd04642 CBS_pair_29 The CBS do 21.3 1.1E+02 0.0024 17.5 2.5 22 48-70 2-23 (126)
105 PF11305 DUF3107: Protein of u 21.0 57 0.0012 18.9 1.0 28 30-57 38-65 (74)
106 cd04591 CBS_pair_EriC_assoc_eu 20.7 1.2E+02 0.0025 17.1 2.4 24 46-70 1-24 (105)
No 1
>PRK11573 hypothetical protein; Provisional
Probab=99.50 E-value=1.2e-14 Score=106.01 Aligned_cols=64 Identities=11% Similarity=0.318 Sum_probs=57.6
Q ss_pred chhccceeeecccCCCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076 3 KKFKTGIPMEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE 71 (71)
Q Consensus 3 ~~~~~l~~~~~~~~~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh 71 (71)
.|++++++.... .++++|++||.|+|+|++++|+||||||++|++++.+++++ ++++.+.++||
T Consensus 157 eEl~~lv~~~~~----~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~ 220 (413)
T PRK11573 157 EELRTIVHESRS----QISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPH 220 (413)
T ss_pred HHHHHHHHHHhh----hcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCC
Confidence 477777764322 59999999999999999999999999999999999999999 79999999998
No 2
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.47 E-value=5.5e-14 Score=102.52 Aligned_cols=60 Identities=25% Similarity=0.448 Sum_probs=56.2
Q ss_pred eecccCCCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076 11 MEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE 71 (71)
Q Consensus 11 ~~~~~~~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh 71 (71)
+..+.+.|.++++|+.|++|+|+|++++|++|||||++|++++.+.+.+ ++++.+.++||
T Consensus 180 ~~~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~~~~~~~~~ 239 (429)
T COG1253 180 VSESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIELILESGH 239 (429)
T ss_pred HHhHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHHHHHHhCCC
Confidence 3456678999999999999999999999999999999999999999999 79999999998
No 3
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.46 E-value=5.3e-14 Score=102.32 Aligned_cols=65 Identities=23% Similarity=0.431 Sum_probs=57.2
Q ss_pred chhccceeeecccCCCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076 3 KKFKTGIPMEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE 71 (71)
Q Consensus 3 ~~~~~l~~~~~~~~~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh 71 (71)
.|++.+++. +.+.| ++++|++|++|+|+|++++|+||||||++|++++.+++++ ++++.+.++||
T Consensus 160 eEl~~lv~~--~~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~ 224 (408)
T TIGR03520 160 DQLSQALEL--TDEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGY 224 (408)
T ss_pred HHHHHHHHh--HhhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCC
Confidence 466777653 34445 6899999999999999999999999999999999999999 79999999997
No 4
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.44 E-value=1e-13 Score=97.22 Aligned_cols=66 Identities=14% Similarity=0.312 Sum_probs=60.0
Q ss_pred chhccceeeecccCCCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076 3 KKFKTGIPMEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE 71 (71)
Q Consensus 3 ~~~~~l~~~~~~~~~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh 71 (71)
.|+++|+. .+.+.|.|+++|++||.|+|+|++++|++|||||.++++++.++++. ++++.+.++||
T Consensus 35 eEl~~l~~--~~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~~~i~~~~~ 100 (292)
T PRK15094 35 DELLALIR--DSEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAH 100 (292)
T ss_pred HHHHHHHH--hHhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHHHHHHhcCC
Confidence 46777764 46667999999999999999999999999999999999999999999 79999999886
No 5
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.31 E-value=3.6e-13 Score=93.93 Aligned_cols=62 Identities=13% Similarity=0.314 Sum_probs=58.2
Q ss_pred eeeecccCCCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076 9 IPMEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE 71 (71)
Q Consensus 9 ~~~~~~~~~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh 71 (71)
+-++.++.++.|+.+.+.|++|++++.|.+|+|||+||+++++|+.+.+++ +++..|++++|
T Consensus 39 ~liRdse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~~l~~iiesaH 100 (293)
T COG4535 39 ELIRDSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAH 100 (293)
T ss_pred HHHHHhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-HHHHHHHHhcc
Confidence 345678889999999999999999999999999999999999999999999 79999999987
No 6
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.28 E-value=1.5e-12 Score=95.04 Aligned_cols=67 Identities=15% Similarity=0.346 Sum_probs=58.5
Q ss_pred cchhccceeeecccCCCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076 2 KKKFKTGIPMEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE 71 (71)
Q Consensus 2 ~~~~~~l~~~~~~~~~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh 71 (71)
+.||++.|+.. +..|...+.+++||.|+|||++.+|+||||||.+|.++++|.+++ ++++++..+.|
T Consensus 167 ~EElR~~v~~~--~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s~H 233 (423)
T COG4536 167 KEELRTAVNES--GSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHSPH 233 (423)
T ss_pred HHHHHHHHHHh--hcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhCCC
Confidence 34677776543 445677788999999999999999999999999999999999999 79999999987
No 7
>KOG2118|consensus
Probab=98.78 E-value=1.2e-09 Score=81.78 Aligned_cols=70 Identities=34% Similarity=0.501 Sum_probs=65.9
Q ss_pred cchhccceeeecccCC-CcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076 2 KKKFKTGIPMEATSNL-VALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE 71 (71)
Q Consensus 2 ~~~~~~l~~~~~~~~~-g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh 71 (71)
.+++++|+..+.+... |.+..+|..++.|+++|.++.|++||||..++|+++.+..++++.+..+.++||
T Consensus 168 ~~~l~~lv~~~~~e~~~g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~ 238 (498)
T KOG2118|consen 168 RASLLALVQLVGNEAGKGDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGY 238 (498)
T ss_pred hHHHHHHHHHHhcccccCcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCc
Confidence 3678999999988777 999999999999999999999999999999999999999999999999999987
No 8
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=96.94 E-value=0.0011 Score=49.00 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=44.0
Q ss_pred CcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHH
Q psy17076 18 VALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVR 68 (71)
Q Consensus 18 g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~ 68 (71)
+.+++++++++.++++|.+.+|+++|+ +++.+++.+.++. ++++.+.+
T Consensus 112 ~~l~~~er~~i~~ll~~~e~tvg~iMt--~~~~~v~~~~tv~-eal~~l~~ 159 (449)
T TIGR00400 112 ASSTEEERKAINLLLSYSDDSAGRIMT--IEYVELKEDYTVG-KALDYIRR 159 (449)
T ss_pred HcCCHHHHHHHHHHhCCCcchHHHhCc--CceEEECCCCcHH-HHHHHHHh
Confidence 468999999999999999999999998 5899999999999 69998864
No 9
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=95.18 E-value=0.01 Score=31.05 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=26.7
Q ss_pred eecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076 39 VEEIMTKLDDCYMLDIETILNFTVISEIVRTGE 71 (71)
Q Consensus 39 V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh 71 (71)
|+++|+| ++.+++.++++. ++++.+.++++
T Consensus 1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~ 30 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGI 30 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTS
T ss_pred CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCC
Confidence 5789999 999999999999 79999988764
No 10
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=93.05 E-value=0.13 Score=38.18 Aligned_cols=52 Identities=12% Similarity=0.197 Sum_probs=41.4
Q ss_pred ecccCCCcCCH-----HHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076 12 EATSNLVALKK-----DEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE 71 (71)
Q Consensus 12 ~~~~~~g~i~~-----~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh 71 (71)
......|.|.+ ++.+++.+++++++..++ ++++++.+.++. ++++.+.+++|
T Consensus 55 a~~gg~GvI~~n~~~e~q~~~V~~Vk~~~~~~~~-------~~vtl~~~~tv~-eal~~m~~~~~ 111 (450)
T TIGR01302 55 AREGGIGVIHRNMSIEEQAEQVKRVKRAENGIIS-------DPVTISPETTVA-DVLELMERKGI 111 (450)
T ss_pred HhcCCCceeecCCCHHHHHHHHhhhccccCceec-------CceEeCCCCCHH-HHHHHHHHcCC
Confidence 34455788884 899999999988876443 678999999999 69999887764
No 11
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=88.08 E-value=0.4 Score=33.56 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=30.6
Q ss_pred CCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
...+|+++|++..++..++.++++. ++++.+.+++
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~ 234 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKN 234 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcC
Confidence 6678999999877999999999999 6999887765
No 12
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=85.28 E-value=0.97 Score=25.65 Aligned_cols=53 Identities=9% Similarity=0.159 Sum_probs=38.0
Q ss_pred cCCCcCCHHH-HHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 15 SNLVALKKDE-VNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 15 ~~~g~i~~~e-~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.-.|.+...+ ...+....+....++.++|.|. +..++.+.++. ++++.+.+++
T Consensus 36 ~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~--~~~v~~~~~~~-~~~~~~~~~~ 89 (114)
T cd04604 36 RLVGIFTDGDLRRALEKGLDILTLPVADVMTRN--PKTIDPDALAA-EALELMEENK 89 (114)
T ss_pred CEEEEechHHHHHHHhccCccccCCHHHhhccC--CeEECCCCcHH-HHHHHHHHcC
Confidence 4456676554 4445555556667899999874 56789999999 6999887765
No 13
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=84.04 E-value=0.68 Score=35.22 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=31.8
Q ss_pred CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 34 MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 34 l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
..+.+|++||+|..++++++.+.++. ++++.+.+++
T Consensus 158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~ 193 (502)
T PRK07107 158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHK 193 (502)
T ss_pred CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcC
Confidence 45678999999988999999999999 7999988765
No 14
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=83.37 E-value=1 Score=25.78 Aligned_cols=52 Identities=15% Similarity=0.120 Sum_probs=36.6
Q ss_pred CCCcCCHHHHHHHHHhhc-CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 16 NLVALKKDEVNIISGALE-MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 16 ~~g~i~~~e~~ml~~~l~-l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
-.|.+...+ ++....+ ..+.++.++|.|-..+..++.++++. ++++.+.+++
T Consensus 37 ~~G~v~~~d--l~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~ 89 (114)
T cd04801 37 YVGIISLAD--LRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLA-EVLKLLEEQG 89 (114)
T ss_pred EEEEEEHHH--HHHHHHhhccccchhhhhcccccceEECCCCcHH-HHHHHHHHCC
Confidence 346666544 3322221 23578999999877778999999999 7999988775
No 15
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=82.75 E-value=1.3 Score=26.08 Aligned_cols=53 Identities=8% Similarity=0.105 Sum_probs=37.6
Q ss_pred cCCCcCCHHHHHHHHHhhcC------CC--ceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076 15 SNLVALKKDEVNIISGALEM------TQ--KKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE 71 (71)
Q Consensus 15 ~~~g~i~~~e~~ml~~~l~l------~d--~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh 71 (71)
...|..+.+. +.+..-|.+ .+ .+|+++|.+ ++..++.+.++. ++++.+.++++
T Consensus 29 ~~~g~~n~e~-~~vl~~~~~~~p~ll~~v~~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~ 89 (113)
T cd04597 29 ARLGEPNPQT-RYVLEYLGIEPPILLADVHPRVRDVINR--KPVTARPNDPLR-EALNLMHEHNI 89 (113)
T ss_pred hhcCCCCHHH-HHHHHHcCCCCchhhcchhhhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCC
Confidence 4456666554 555555553 33 679999986 677889999999 69998877653
No 16
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=81.56 E-value=1.1 Score=34.16 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=36.7
Q ss_pred CCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 17 LVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 17 ~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.|.++..+...+. -.+.+|+++|+|...+..++.+.++. ++++.+.+++
T Consensus 147 vGIVT~~DL~~v~----~~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~ 195 (505)
T PLN02274 147 LGYVTKRDWDFVN----DRETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSK 195 (505)
T ss_pred EEEEEHHHHhhcc----ccCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcC
Confidence 3556554433221 24678999999988899999999999 7999988765
No 17
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=81.33 E-value=0.96 Score=33.88 Aligned_cols=46 Identities=28% Similarity=0.372 Sum_probs=37.6
Q ss_pred HHHHHHhhc-----CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076 25 VNIISGALE-----MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE 71 (71)
Q Consensus 25 ~~ml~~~l~-----l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh 71 (71)
.+||..|+. =.=.+|.|||+|..+-..|..+.+++ +..+...+.||
T Consensus 171 AtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~ 221 (432)
T COG4109 171 ATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGH 221 (432)
T ss_pred HHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCC
Confidence 356665552 33468999999999999999999999 79999998887
No 18
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=81.25 E-value=1 Score=34.18 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=30.9
Q ss_pred CCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.+.+|+++|+|+.+++.++.+.++. ++++.+.+++
T Consensus 157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~ 191 (495)
T PTZ00314 157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESR 191 (495)
T ss_pred CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcC
Confidence 4578999999999999999999999 7999888765
No 19
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=80.32 E-value=1.5 Score=24.68 Aligned_cols=52 Identities=10% Similarity=0.180 Sum_probs=34.6
Q ss_pred CCCcCCHHHHH--HHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 16 NLVALKKDEVN--IISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 16 ~~g~i~~~e~~--ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
--|.+...+.. +.....+..+.++.++|.+ .+.+++.+.++. ++++.+.+++
T Consensus 36 ~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~ 89 (113)
T cd04623 36 LVGIFSERDIVRKVALRGASALDTPVSEIMTR--NVITVTPDDTVD-EAMALMTERR 89 (113)
T ss_pred EEEEEehHHHHHHHhhcCCCccccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcC
Confidence 34666655421 1111112335689999966 688899999999 6999988765
No 20
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=79.34 E-value=1.4 Score=30.84 Aligned_cols=50 Identities=6% Similarity=0.088 Sum_probs=36.3
Q ss_pred cCCCcCCHHHHHHHHHhh----cCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 15 SNLVALKKDEVNIISGAL----EMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 15 ~~~g~i~~~e~~ml~~~l----~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.-.|.++..+ +. +++ ++.+.+|+++|+| ++.+++.++++. ++++.+.+++
T Consensus 246 ~lvGivt~~D--l~-~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~ 299 (326)
T PRK10892 246 KIEGIFTDGD--LR-RVFDMGIDLRQASIADVMTP--GGIRVRPGILAV-DALNLMQSRH 299 (326)
T ss_pred cEEEEEecHH--HH-HHHhcCCCcccCCHHHhcCC--CCEEECCCCCHH-HHHHHHHHCC
Confidence 3446676554 22 233 3557789999987 678999999999 6999988765
No 21
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=78.97 E-value=1.6 Score=25.34 Aligned_cols=51 Identities=10% Similarity=0.251 Sum_probs=36.8
Q ss_pred CCcCCHHHHHHHHHhh---cCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 17 LVALKKDEVNIISGAL---EMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 17 ~g~i~~~e~~ml~~~l---~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.|.++... ++...+ ++.+.++.++|+.-.++..++.++++. ++++.+.+++
T Consensus 37 ~Givt~~d--l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~ 90 (118)
T cd04617 37 VGVVSRKD--LLKASIGGADLQKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQ 90 (118)
T ss_pred EEEEEHHH--HHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcC
Confidence 56676543 333332 345677889997545688999999999 7999998876
No 22
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=77.71 E-value=1.9 Score=24.27 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=34.5
Q ss_pred CCCcCCHHHHHH-HHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 16 NLVALKKDEVNI-ISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 16 ~~g~i~~~e~~m-l~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
-.|.+...+..- +.....+...++.++|.|. +.+++.++++. ++++.+.+++
T Consensus 36 ~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~--~~~v~~~~~~~-~~~~~~~~~~ 88 (114)
T cd04613 36 LVGIVSLDDIREILFDPSLYDLVVASDIMTKP--PVVVYPEDSLE-DALKKFEDSD 88 (114)
T ss_pred EEEEEEHHHHHHHHhcccccccEEHHHhccCC--CcEEcCCCCHH-HHHHHHhhCC
Confidence 356666654321 1122223447899999775 78888999999 6998887765
No 23
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=77.19 E-value=4.5 Score=30.61 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=44.9
Q ss_pred CcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 18 VALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 18 g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
..++++++.-++..+.+.+-++..+|++ +.++++.+.+.+ +++..+.+.+
T Consensus 113 ~~l~~~~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~-~al~~ir~~~ 162 (451)
T COG2239 113 SLLDPEERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVD-EALDRIRERA 162 (451)
T ss_pred HhCCHHHHHHHHHhcCCChhhhhcccee--eeEEeccCcCHH-HHHHHHHHhc
Confidence 3468899999999999999999999996 789999999999 6999998654
No 24
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=76.60 E-value=1.5 Score=32.00 Aligned_cols=38 Identities=8% Similarity=0.126 Sum_probs=31.4
Q ss_pred HHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 28 ISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 28 l~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
+.++ |+..+|+++|.| ++..++.++++. ++++.+.+.+
T Consensus 328 ~~~~--l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~ 365 (454)
T TIGR01137 328 VFDV--LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYG 365 (454)
T ss_pred HHHH--hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcC
Confidence 5555 788999999976 588899999999 6998887655
No 25
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=76.04 E-value=2.6 Score=23.89 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=27.8
Q ss_pred CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 34 MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 34 l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
..+.++.++|.+ .+.+++.++++. ++++.+.+++
T Consensus 55 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~ 88 (112)
T cd04802 55 PREVPVGEVMST--PLITIDPNASLN-EAAKLMAKHG 88 (112)
T ss_pred cccCCHHHhcCC--CcEEECCCCCHH-HHHHHHHHcC
Confidence 356789999965 588889999999 6999988765
No 26
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=74.88 E-value=2.2 Score=26.15 Aligned_cols=31 Identities=23% Similarity=0.154 Sum_probs=25.7
Q ss_pred eecceee-------cccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 39 VEEIMTK-------LDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 39 V~eIMtP-------R~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
+.++|+| +.++++++.++++. ++++.+.+++
T Consensus 71 v~~i~~~~~~~~~~~~~~~~v~~~~~l~-ea~~~m~~~~ 108 (133)
T cd04592 71 VSSVCTKGISYGGQECGLWTCTPDTDLT-TAKKLMEAKG 108 (133)
T ss_pred HHHHhhhhhhhcccCCCCEEECCCCCHH-HHHHHHHHcC
Confidence 4568875 46799999999999 7999998775
No 27
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=74.56 E-value=4.5 Score=30.37 Aligned_cols=51 Identities=10% Similarity=0.138 Sum_probs=39.1
Q ss_pred cccCCCcCC-----HHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076 13 ATSNLVALK-----KDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE 71 (71)
Q Consensus 13 ~~~~~g~i~-----~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh 71 (71)
.++..|.|. +++.+++..+.++++ +|+ .++.+++.+.++. ++++.+.+++|
T Consensus 63 ~~GglG~i~~~~~~e~~~~~I~~vk~~~d-----im~--~~~v~i~~~~tv~-ea~~~m~~~~~ 118 (486)
T PRK05567 63 REGGIGVIHKNMSIEEQAEEVRKVKRSES-----GVV--TDPVTVTPDTTLA-EALALMARYGI 118 (486)
T ss_pred hCCCCCEecCCCCHHHHHHHHHHhhhhhh-----ccc--CCCeEeCCCCCHH-HHHHHHHHhCC
Confidence 445556666 477899999988654 555 6788899999999 69999887664
No 28
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=74.32 E-value=3.2 Score=23.84 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=33.2
Q ss_pred CCcCCHHHHHHHHHhh-cCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 17 LVALKKDEVNIISGAL-EMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 17 ~g~i~~~e~~ml~~~l-~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.|.++..+ ++.... +..+.+|.++|.+ .+.+++.++++. +++..+.+++
T Consensus 37 ~G~v~~~d--l~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~-~al~~m~~~~ 86 (111)
T cd04603 37 LGQVTLSD--LLEIGPNDYETLKVCEVYIV--PVPIVYCDSKVT-DLLRIFRETE 86 (111)
T ss_pred EEEEEHHH--HHhhccccccccChhheeec--CCcEECCCCcHH-HHHHHHHHcC
Confidence 46676544 322111 2234579999954 568899999999 7999998876
No 29
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=74.30 E-value=1.3 Score=30.81 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=29.2
Q ss_pred CceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 36 QKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 36 d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
..+|+++|.+...+..++.++++. ++++.+.+++
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~ 229 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTG 229 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcC
Confidence 578999999986789999999999 6988887654
No 30
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=72.96 E-value=2.7 Score=23.86 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=27.3
Q ss_pred CCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.+.++.++|.+ +..+++.++++. +++..+.+.+
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~ 97 (122)
T cd04585 65 SKIKVSDIMTR--DPITVSPDASVE-EAAELMLERK 97 (122)
T ss_pred cccCHHHhccC--CCeEeCCCCcHH-HHHHHHHHcC
Confidence 45778999976 688999999999 6998887765
No 31
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=72.29 E-value=2.5 Score=24.22 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=28.5
Q ss_pred cCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 33 EMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 33 ~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
...+.+++++|.+ .+.+++.++++. ++++.+.+++
T Consensus 63 ~~~~~~v~~~~~~--~~~~i~~~~~l~-~~~~~~~~~~ 97 (121)
T cd04584 63 LLLKMPVKEIMTK--DVITVHPLDTVE-EAALLMREHR 97 (121)
T ss_pred hhcCcCHHHHhhC--CCeEECCCCcHH-HHHHHHHHcC
Confidence 3456789999976 578999999999 6998887765
No 32
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=70.41 E-value=3.5 Score=24.91 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=26.4
Q ss_pred CceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 36 QKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 36 d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
+.+|+++|++ .+.+++.+.++. ++++.+.+.+
T Consensus 80 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~ 111 (135)
T cd04621 80 PLVAEDIMTE--EIITVSPNDDVV-DAAKLMLEAN 111 (135)
T ss_pred cccHHHhcCC--CCeEECCCCCHH-HHHHHHHHcC
Confidence 5689999976 467899999999 6999988765
No 33
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=69.41 E-value=3.7 Score=23.20 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=35.0
Q ss_pred ccCCCcCCHHHHHHHHHhh---cCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 14 TSNLVALKKDEVNIISGAL---EMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 14 ~~~~g~i~~~e~~ml~~~l---~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
+.-.|.+.... ++.... ...+.+++++|.+ ++.+++.++++. ++++.+.+++
T Consensus 33 ~~~~G~v~~~~--l~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~ 87 (111)
T cd04589 33 DPRLGIVTRTD--LLDAVLLDGLPSSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHR 87 (111)
T ss_pred CeEEEEEEHHH--HHHHHHcCCCCCCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhC
Confidence 34456666544 222111 1245679999965 688999999999 6999988876
No 34
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=67.61 E-value=5.6 Score=22.68 Aligned_cols=49 Identities=16% Similarity=0.130 Sum_probs=34.1
Q ss_pred CCcCCHHHHHHHHHh----hcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 17 LVALKKDEVNIISGA----LEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 17 ~g~i~~~e~~ml~~~----l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.|.++..+ ++..+ .+..+.++.++|. .++.+++.++++. ++++.+.+++
T Consensus 38 ~G~v~~~d--l~~~~~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~-~~~~~~~~~~ 90 (114)
T cd04630 38 YGIVTMRD--ILKKVVAEGRDPDRVNVYEIMT--KPLISVSPDMDIK-YCARLMERTN 90 (114)
T ss_pred EEEEehHH--HHHHHHhCCCCCCccCHHHHhc--CCCeeECCCCCHH-HHHHHHHHcC
Confidence 56676644 33222 2344567999994 3688999999999 6999887754
No 35
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=67.25 E-value=5.8 Score=22.34 Aligned_cols=31 Identities=3% Similarity=0.075 Sum_probs=25.3
Q ss_pred ceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 37 KKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 37 ~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.++.++|.+. ..+++.+.++. ++++.+.+++
T Consensus 50 ~~~~~~~~~~--~~~v~~~~~l~-~a~~~~~~~~ 80 (104)
T cd04594 50 GDVVDYIVRG--IPYVRLTSTAE-EAWEVMMKNK 80 (104)
T ss_pred cchhhhhhcC--CcEEcCCCCHH-HHHHHHHHcC
Confidence 4588899754 68899999999 6999888765
No 36
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=67.02 E-value=4.4 Score=22.85 Aligned_cols=49 Identities=14% Similarity=0.168 Sum_probs=33.4
Q ss_pred CCcCCHHHHHHHHHhh----cCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 17 LVALKKDEVNIISGAL----EMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 17 ~g~i~~~e~~ml~~~l----~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.|.++..+ ++.... +..+.+++++|.+ ++..++.++++. ++++.+.+++
T Consensus 36 ~G~v~~~d--l~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~ 88 (112)
T cd04625 36 VGLLTFRE--VLQAMAQHGAGVLDTTVRAIMNP--EPIVASPDDSID-EVRRLMVERH 88 (112)
T ss_pred EEEEEHHH--HHHHHHhcCCchhcCCHHHHhCC--CCeEECCCCCHH-HHHHHHHHcC
Confidence 45566544 333222 2345679999954 577899999999 6999888765
No 37
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=66.22 E-value=5.6 Score=22.39 Aligned_cols=51 Identities=6% Similarity=0.142 Sum_probs=33.3
Q ss_pred CCcCCHHHH--HHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 17 LVALKKDEV--NIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 17 ~g~i~~~e~--~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.|.++..+. .++..-.+....++.++|.+ ...+++.++++. ++++.+.+++
T Consensus 36 ~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~ 88 (113)
T cd04622 36 VGIVTDRDIVVRAVAEGRDPDTTTVGDVMTR--GVVTVTEDDDVD-EAARLMREHQ 88 (113)
T ss_pred EEEEEhHHHHHHHhhccCCcccCCHHHhccC--CccEECCCCCHH-HHHHHHHHcC
Confidence 455665442 22222233444569999965 577889999999 6998887665
No 38
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=65.94 E-value=5 Score=22.66 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=35.0
Q ss_pred cCCCcCCHHHHH--HHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 15 SNLVALKKDEVN--IISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 15 ~~~g~i~~~e~~--ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.-.|.++..+.. .+.+- .+.+.++.++|.+ .+.+++.+.++. ++++.+.+++
T Consensus 35 ~~~G~v~~~dl~~~~~~~~-~~~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~ 88 (113)
T cd04615 35 RLVGIITRYDVLSYALESE-ELKDAKVREVMNS--PVITIDANDSIA-KARWLMSNNN 88 (113)
T ss_pred CEEEEEEHHHHHHhhhhhh-hhcCCcHHHhccC--CceEECCCCcHH-HHHHHHHHcC
Confidence 345666665432 12221 2456789999975 578899999999 6999887764
No 39
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=65.13 E-value=7.3 Score=21.88 Aligned_cols=51 Identities=14% Similarity=0.217 Sum_probs=33.0
Q ss_pred CCcCCHHHH--HHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 17 LVALKKDEV--NIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 17 ~g~i~~~e~--~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.|.++..+. ..+..-....+.++.++|.+ ...+++.+.++. ++++.+.+++
T Consensus 36 ~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~--~~~~v~~~~~l~-~~~~~~~~~~ 88 (113)
T cd04587 36 VGIFTSKDIALRVVAQGLDPESTLVERVMTP--NPVCATSDTPVL-EALHLMVQGK 88 (113)
T ss_pred EEEEEhHHHHHHHHhcCCCcCcCCHHHhcCC--CCeEEcCCCCHH-HHHHHHHHcC
Confidence 466665543 22222122223689999954 567899999999 6999888765
No 40
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=64.36 E-value=3.9 Score=23.86 Aligned_cols=34 Identities=9% Similarity=0.149 Sum_probs=27.5
Q ss_pred CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 34 MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 34 l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
+.+.+++++|++ ++.+++.++++. ++++.+.+++
T Consensus 68 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~ 101 (128)
T cd04632 68 MLDLPVYDAMSS--PVITASPNDSVR-DAVDRMLEND 101 (128)
T ss_pred hccCcHHHHhcC--CCceECCCCcHH-HHHHHHHhCC
Confidence 345679999964 588999999999 6999888775
No 41
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=63.05 E-value=10 Score=21.11 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=31.6
Q ss_pred cCCCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 15 SNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 15 ~~~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.-.|.++..+. +. + ...++.++|.|. ...++.+.++. ++++.+.+++
T Consensus 35 ~~~Giv~~~dl--~~-~---~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~ 81 (106)
T cd04582 35 QPLGFVTRREA--AR-A---SGGCCGDHAEPF--KVTVSVDDDLR-IVLSRMFAHD 81 (106)
T ss_pred CEEEEEeHHHH--HH-h---cccchhhhcccC--CEEECCCCCHH-HHHHHHHHCC
Confidence 33566765442 22 1 123588999774 56789999999 6999888765
No 42
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=62.81 E-value=8.7 Score=21.59 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=34.3
Q ss_pred CCCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 16 NLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 16 ~~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
-.|.+...+..-.. .-++.+.++.++|.+ ...+++.++++. +++..+.+++
T Consensus 36 ~~G~v~~~dl~~~~-~~~~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~ 86 (110)
T cd04595 36 VVGIISRRDVEKAL-RHGLGHAPVKDYMST--DVVTVPPDTPLS-EVQELMVEHD 86 (110)
T ss_pred EEEEEEHHHHHHHH-hcccccCcHHHHhcC--CCEEECCCCcHH-HHHHHHHHcC
Confidence 34666655422111 112356789999975 688899999999 6999887765
No 43
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=62.37 E-value=5.9 Score=22.05 Aligned_cols=32 Identities=31% Similarity=0.288 Sum_probs=25.4
Q ss_pred CceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 36 QKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 36 d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
+..++++|.++ ..+++.++++. ++++.+.+++
T Consensus 51 ~~~~~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~ 82 (107)
T cd04610 51 DETVEEIMSKD--LVVAVPEMDIM-DAARVMFRTG 82 (107)
T ss_pred cccHHHhCCCC--CeEECCCCCHH-HHHHHHHHhC
Confidence 45799999665 67788999999 6998887664
No 44
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=62.26 E-value=4.1 Score=23.09 Aligned_cols=32 Identities=9% Similarity=0.139 Sum_probs=26.1
Q ss_pred CceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 36 QKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 36 d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
+.++.++|.|. ..+++.++++. ++++.+.+++
T Consensus 62 ~~~v~~~~~~~--~~~v~~~~~l~-~a~~~~~~~~ 93 (116)
T cd04643 62 DLKVIDVMNTD--VPVIIDDADIE-EILHLLIDQP 93 (116)
T ss_pred CCcHHHHhcCC--CceecCCCCHH-HHHHHHhcCC
Confidence 67899999774 77788999999 6998887654
No 45
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=62.14 E-value=3.8 Score=24.02 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=27.2
Q ss_pred CCCceeecceeecccEEEee----CCCCccHHHHHHHHHcC
Q psy17076 34 MTQKKVEEIMTKLDDCYMLD----IETILNFTVISEIVRTG 70 (71)
Q Consensus 34 l~d~~V~eIMtPR~~v~~l~----~~~~l~~~~~~~i~~sg 70 (71)
..+.+|+++|.+...++.++ .++++. ++++.+.+++
T Consensus 61 ~~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~ 100 (126)
T cd04640 61 RSELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASG 100 (126)
T ss_pred chheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCC
Confidence 35678999997766556664 578888 6999988775
No 46
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=59.85 E-value=4.3 Score=30.83 Aligned_cols=34 Identities=3% Similarity=0.080 Sum_probs=27.5
Q ss_pred CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 34 MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 34 l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
++..+|+|+|+|. ...++.++++. ++++.+.+++
T Consensus 444 L~~~~V~dim~~~--~~~v~~~~tl~-ea~~~l~~~~ 477 (574)
T PRK01862 444 LRTTQMRELIQPA--QTVVPPTASVA-DMTRVFLEYP 477 (574)
T ss_pred HhhCcHHHHhcCC--CceeCCCCCHH-HHHHHHHhCC
Confidence 5678999999874 45688999999 6998887765
No 47
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=59.19 E-value=6.5 Score=22.46 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=27.7
Q ss_pred CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 34 MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 34 l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
+...++.++|.+ ...+++.+.++. +++..+.+.+
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~ 97 (121)
T cd04633 64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENN 97 (121)
T ss_pred hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcC
Confidence 356688899964 688999999999 6999988765
No 48
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=58.92 E-value=7.1 Score=22.98 Aligned_cols=30 Identities=37% Similarity=0.484 Sum_probs=25.1
Q ss_pred eeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 38 KVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 38 ~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
++.++|.+ ++..++.++++. ++++.+.+.|
T Consensus 79 ~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~ 108 (132)
T cd04636 79 KVEEIMTK--KVITVDEDTTIE-DVARIMSKKN 108 (132)
T ss_pred CHHHhccC--CceEECCCCcHH-HHHHHHHHCC
Confidence 78899964 578899999999 6999888765
No 49
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=58.57 E-value=7.5 Score=21.53 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=27.6
Q ss_pred CCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076 35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE 71 (71)
Q Consensus 35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh 71 (71)
.+..+.++|.| +..+++.++++. ++++.+.+++.
T Consensus 49 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~ 82 (105)
T cd04599 49 PNRLVADAMTR--EVVTISPEASLL-EAKRLMEEKKI 82 (105)
T ss_pred ccCCHHHHccC--CCEEECCCCCHH-HHHHHHHHcCC
Confidence 35678999965 688899999999 69999888763
No 50
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=56.15 E-value=9.8 Score=21.17 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=24.0
Q ss_pred CceeecceeecccEEEeeC-CCCccHHHHHHHHHcCC
Q psy17076 36 QKKVEEIMTKLDDCYMLDI-ETILNFTVISEIVRTGE 71 (71)
Q Consensus 36 d~~V~eIMtPR~~v~~l~~-~~~l~~~~~~~i~~sgh 71 (71)
+.++.++|.++..+ +.. ++++. ++++.+.++++
T Consensus 53 ~~~v~~~~~~~~~~--~~~~~~~l~-~~~~~~~~~~~ 86 (110)
T cd04601 53 DKPVSEVMTPENLL--TTVEGTSLE-EALELLHEHKI 86 (110)
T ss_pred CCCHHHhcccCceE--EecCCCCHH-HHHHHHHHhCC
Confidence 46889999665433 344 89988 69999888763
No 51
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=54.84 E-value=9.1 Score=21.52 Aligned_cols=52 Identities=10% Similarity=0.195 Sum_probs=34.7
Q ss_pred CCCcCCHHHH--HHHHHhhc-CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 16 NLVALKKDEV--NIISGALE-MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 16 ~~g~i~~~e~--~ml~~~l~-l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
-.|.++..+. .+..+.+. -.+..+.++|.+ ...+++.++++. ++++.+.+++
T Consensus 36 ~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~ 90 (114)
T cd04629 36 LVGFLSEQDCLKQLLESSYHCDGVATVRDIMTT--EVLTVSPDDSIV-DLAQLMLKAK 90 (114)
T ss_pred EEEEeehHHHHHHhhhhhhccCCCccHHHHhcc--CceEECCCCcHH-HHHHHHHHhC
Confidence 3566766542 22222221 235679999975 578899999999 6999888764
No 52
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=54.78 E-value=8.8 Score=22.64 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=28.0
Q ss_pred CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 34 MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 34 l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
....++.++|.+ ...+++.++++. ++++.+.+.|
T Consensus 78 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~ 111 (135)
T cd04586 78 SHGRKVADVMTR--PVVTVGEDTPLA-EVAELMEEHR 111 (135)
T ss_pred hcCCCHHHHhCC--CceEeCCCCcHH-HHHHHHHHcC
Confidence 456789999955 678899999999 6999888766
No 53
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=54.64 E-value=6.6 Score=28.32 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=27.9
Q ss_pred CCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
-+.+|+++|. .++++++.|..+- ++++....++
T Consensus 232 ~~~kV~~~M~--k~vitI~eDe~i~-dAir~M~~~n 264 (294)
T COG2524 232 LDAKVSDYMR--KNVITINEDEDIY-DAIRLMNKNN 264 (294)
T ss_pred ccccHHHHhc--cCCceEcCchhHH-HHHHHHHhcC
Confidence 3678999995 5899999999999 7999887665
No 54
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=54.20 E-value=9.7 Score=21.42 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=27.1
Q ss_pred CCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.+..++++|.+ ...+++.+.++. ++++.+.+++
T Consensus 51 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~ 83 (108)
T cd04596 51 PDTTIEKVMTK--NPITVNPKTSVA-SVAHMMIWEG 83 (108)
T ss_pred ccccHHHHhcC--CCeEECCCCCHH-HHHHHHHHcC
Confidence 46689999975 578899999999 6999888765
No 55
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=53.78 E-value=9.9 Score=28.63 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=29.0
Q ss_pred CceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076 36 QKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE 71 (71)
Q Consensus 36 d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh 71 (71)
...|+++|+ +.++.+++.+.++. ++.+.+.++++
T Consensus 245 ~~~V~~iM~-~~~~~~~~~~~~~~-~~~~~m~~~~~ 278 (546)
T PRK14869 245 SIPVSYIMT-TEDLVTFSKDDYLE-DVKEVMLKSRY 278 (546)
T ss_pred CCCHHHhcc-CCCcEEECCCCcHH-HHHHHHHhcCC
Confidence 578999998 46899999999999 79999887763
No 56
>COG0517 FOG: CBS domain [General function prediction only]
Probab=53.71 E-value=24 Score=19.74 Aligned_cols=47 Identities=21% Similarity=0.303 Sum_probs=34.1
Q ss_pred CCcCCHHHHHHHHHhhcCCCc--eeecceeecccEEEeeCCCCccHHHHHHHHH
Q psy17076 17 LVALKKDEVNIISGALEMTQK--KVEEIMTKLDDCYMLDIETILNFTVISEIVR 68 (71)
Q Consensus 17 ~g~i~~~e~~ml~~~l~l~d~--~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~ 68 (71)
.|.++. ++++.....-... .+.++|++ .+++++.+.++. ++.+.+.+
T Consensus 42 ~Giit~--~di~~~~~~~~~~~~~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~ 90 (117)
T COG0517 42 VGIITE--RDILRALAAGGKRLLPVKEVMTK--PVVTVDPDTPLE-EALELMVE 90 (117)
T ss_pred EEEEEH--HHHHHHHhccCCccccHHHhccC--CcEEECCCCCHH-HHHHHHHH
Confidence 344443 4566665544444 59999998 889999999999 68888876
No 57
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=52.39 E-value=12 Score=21.10 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=33.5
Q ss_pred CCCcCCHHHHHHHHHhhcC--CCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 16 NLVALKKDEVNIISGALEM--TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 16 ~~g~i~~~e~~ml~~~l~l--~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
-.|.++..+ ++...++- .+..+.++|.| .+.+++.+.++. ++++.+.+++
T Consensus 37 ~~G~v~~~d--l~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~ 88 (113)
T cd04607 37 LLGTVTDGD--IRRALLKGLSLDDPVSEVMNR--NPITAKVGSSRE-EILALMRERS 88 (113)
T ss_pred EEEEEEcHH--HHHHHhcCCCcCCCHHHhhcC--CCEEEcCCCCHH-HHHHHHHHCC
Confidence 356666543 33333221 24578999954 477899999999 6999988775
No 58
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=51.40 E-value=12 Score=21.17 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=26.7
Q ss_pred CCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.+.++.++|.+ ...+++.+.++. +++..+.+++
T Consensus 59 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~ 91 (119)
T cd04598 59 GKKPVSEVMDP--DPLIVEADTPLE-EVSRLATGRD 91 (119)
T ss_pred cCCcHHHhcCC--CcEEecCCCCHH-HHHHHHHcCC
Confidence 56789999965 688899999999 6988877654
No 59
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=51.14 E-value=13 Score=20.86 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=26.4
Q ss_pred CceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 36 QKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 36 d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
+.++.++|. ..+.+++.++++. ++++.+.+++
T Consensus 56 ~~~v~~~~~--~~~~~v~~~~~l~-~~~~~~~~~~ 87 (111)
T cd04626 56 EKKVFNIVS--QDVFYVNEEDTID-EALDIMREKQ 87 (111)
T ss_pred cCcHHHHhc--CCcEEEcCCCcHH-HHHHHHHHcC
Confidence 567899985 5688899999999 6999888765
No 60
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=50.57 E-value=9.1 Score=21.95 Aligned_cols=32 Identities=13% Similarity=0.261 Sum_probs=26.2
Q ss_pred CceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 36 QKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 36 d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
+.++.++|.+ .+.+++.++++. ++++.+.+++
T Consensus 69 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~ 100 (125)
T cd04631 69 NEPVRSIMTR--NVITITPDDSIK-DAAELMLEKR 100 (125)
T ss_pred hcCHHHHhcC--CceEeCCCCcHH-HHHHHHHHcC
Confidence 4578899864 689999999999 6998887764
No 61
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=50.55 E-value=12 Score=21.34 Aligned_cols=50 Identities=18% Similarity=0.176 Sum_probs=34.1
Q ss_pred CCCcCCHHHHHHHHHhh----cCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 16 NLVALKKDEVNIISGAL----EMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 16 ~~g~i~~~e~~ml~~~l----~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
-.|.++..+ ++.... ...+.++.++|.+ ++..++.++++. ++++.+.+++
T Consensus 36 ~~G~vt~~d--l~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~ 89 (114)
T cd04619 36 LAGVLTKTD--VVRQMGRCGGPGCTAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRG 89 (114)
T ss_pred EEEEEehHH--HHHHHhhcCCCcccCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcC
Confidence 346666554 222221 2335679999954 677899999999 6999988876
No 62
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=50.29 E-value=10 Score=28.10 Aligned_cols=33 Identities=12% Similarity=0.082 Sum_probs=27.9
Q ss_pred CCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.+.+|+++|+| ++++++.++++. ++++.+.+++
T Consensus 193 ~~~~v~~im~~--~~~~v~~~~~~~-eal~~m~~~~ 225 (449)
T TIGR00400 193 PEEILSSIMRS--SVFSIVGVNDQE-EVARLIQKYD 225 (449)
T ss_pred CCCcHHHHhCC--CCeeECCCCCHH-HHHHHHHHcC
Confidence 56789999987 578899999999 6999988765
No 63
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=50.05 E-value=9.1 Score=28.31 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=31.2
Q ss_pred cCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 33 EMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 33 ~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.+.+.+-.+||.+ ||++++.+++++ +..+++.+++
T Consensus 241 ~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H~ 275 (382)
T COG3448 241 RMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEHR 275 (382)
T ss_pred HhccccHHHhcCc--cceecCCcCChH-HHHHHHHHcC
Confidence 4688899999986 899999999999 7999998876
No 64
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=49.28 E-value=18 Score=20.47 Aligned_cols=32 Identities=16% Similarity=0.276 Sum_probs=25.7
Q ss_pred CceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 36 QKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 36 d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
+.+++++|.+ .+.+++.+.++. ++++.+.+++
T Consensus 57 ~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~ 88 (115)
T cd04593 57 PSAVDEVATP--PLLTVHPDEPLA-HALDRMASRG 88 (115)
T ss_pred cccHHHhccC--CceEECCCCCHH-HHHHHHHHcC
Confidence 4458888864 788899999999 6999988765
No 65
>cd07178 terB_like_YebE tellurium resistance terB-like protein, subgroup 3. This family includes several uncharacterized bacterial proteins including an Escherichia coli protein called YebE. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=49.27 E-value=8.8 Score=22.77 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=18.7
Q ss_pred ccceeeecccCCCcCCHHHHHHHHHhhc
Q psy17076 6 KTGIPMEATSNLVALKKDEVNIISGALE 33 (71)
Q Consensus 6 ~~l~~~~~~~~~g~i~~~e~~ml~~~l~ 33 (71)
++++.+. ...|.++++|++.|.+.++
T Consensus 4 rami~aA--kADG~id~~E~~~I~~~~~ 29 (95)
T cd07178 4 RAMIAAA--KADGHIDEAERARILGELG 29 (95)
T ss_pred HHHHHHH--HhcCCCCHHHHHHHHHHHH
Confidence 4444433 3458899999999999885
No 66
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=49.22 E-value=13 Score=21.12 Aligned_cols=34 Identities=12% Similarity=0.094 Sum_probs=26.7
Q ss_pred CceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 36 QKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 36 d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
+..++++|.+....+..+.++++. ++++.+.+++
T Consensus 56 ~~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~ 89 (114)
T cd04602 56 ETPLSEVMTPREVLVVAPTGITLE-EANEILRESK 89 (114)
T ss_pred CCCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcC
Confidence 355899998777766666699999 6999888765
No 67
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=49.11 E-value=13 Score=20.73 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=26.3
Q ss_pred CceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 36 QKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 36 d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
+.++.++|.+ .+.+++.++++. ++++.+.+++
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~ 87 (111)
T cd04800 56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERG 87 (111)
T ss_pred cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcC
Confidence 4678999954 688999999999 6999888764
No 68
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=48.83 E-value=14 Score=20.50 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=26.9
Q ss_pred CCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.+..+.++|.+ .+..++.++++. ++++.+.+++
T Consensus 54 ~~~~v~~~~~~--~~~~~~~~~~l~-~~l~~~~~~~ 86 (111)
T cd04611 54 LQTPVGEVMSS--PLLTVPADTSLY-DARQLMREHG 86 (111)
T ss_pred CCcCHHHhcCC--CceEECCCCCHH-HHHHHHHHcC
Confidence 56789999965 688899999999 6999887665
No 69
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=48.22 E-value=11 Score=22.66 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=26.6
Q ss_pred CCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
....+.++|.+ ...+++.+.++. +++..+.+++
T Consensus 87 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~ 119 (143)
T cd04634 87 GKMKVRDIMTK--KVITISPDASIE-DAAELMVRHK 119 (143)
T ss_pred hcCCHHHHcCC--CCeEECCCCcHH-HHHHHHHHcC
Confidence 45678889965 578999999999 6998888765
No 70
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=48.16 E-value=12 Score=27.92 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=28.7
Q ss_pred CCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.+.+++++|+| .++.+++.+.++. ++++.+.+++
T Consensus 141 ~~~~V~dvm~~-~~~~~V~~~~sl~-eal~~m~~~~ 174 (450)
T TIGR01302 141 KGKPVSEVMTR-EEVITVPEGIDLE-EALKVLHEHR 174 (450)
T ss_pred CCCCHHHhhCC-CCCEEECCCCcHH-HHHHHHHHcC
Confidence 36789999986 5889999999999 6999888765
No 71
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=47.83 E-value=14 Score=21.05 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=26.4
Q ss_pred CCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
....+.++|.+ .+.+++.++++. ++++.+.+.+
T Consensus 67 ~~~~i~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~ 99 (124)
T cd04600 67 KPETVGDIMSP--PVVTVRPDTPIA-ELVPLLADGG 99 (124)
T ss_pred ccccHHHhccC--CCeeeCCCCcHH-HHHHHHHhcC
Confidence 34578999965 688899999999 6999887654
No 72
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=47.62 E-value=16 Score=20.80 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=26.4
Q ss_pred CCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.+..+.++| +..+.+++.++++. ++++.+.+.+
T Consensus 65 ~~~~v~~~~--~~~~~~v~~~~~~~-~~~~~~~~~~ 97 (122)
T cd04803 65 RDVPVAEVM--KTDVLTVTPDTPLR-EAAEIMVENK 97 (122)
T ss_pred cCcCHHHhh--CCCCeEeCCCCcHH-HHHHHHHHcC
Confidence 466788998 45678899999999 6998887665
No 73
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=46.67 E-value=12 Score=28.29 Aligned_cols=31 Identities=10% Similarity=0.098 Sum_probs=27.2
Q ss_pred ceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 37 KKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 37 ~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.+|+++|++ ++..++.++++. ++++.+.+++
T Consensus 68 ~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~ 98 (546)
T PRK14869 68 PQVRDLEID--KPVTVSPDTSLK-EAWNLMDENN 98 (546)
T ss_pred CcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcC
Confidence 689999985 789999999999 6999988776
No 74
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=44.40 E-value=15 Score=24.58 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=27.3
Q ss_pred CCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.+.+|+++|.+ .+.+++.++++. ++++.+.+++
T Consensus 218 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~ 250 (268)
T TIGR00393 218 LKSEVRDFMTL--GPKTFKLDALLL-EALEFLERRK 250 (268)
T ss_pred ccCcHHHhCCC--CCeEECCCCcHH-HHHHHHHHcC
Confidence 35779999965 477899999999 7999988876
No 75
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=43.08 E-value=11 Score=27.10 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=33.8
Q ss_pred HHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 28 ISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 28 l~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
+.++..+.+.+|.++|++ +..++..|+++. ++...+++.|
T Consensus 163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~ 202 (294)
T COG2524 163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKG 202 (294)
T ss_pred EeeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcC
Confidence 356677889999999987 578999999999 6999988876
No 76
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=42.91 E-value=18 Score=20.21 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=26.8
Q ss_pred CCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.+..+.++|. ..+.+++.+.++. ++++.+.+++
T Consensus 54 ~~~~v~~~~~--~~~~~i~~~~~~~-~~~~~~~~~~ 86 (111)
T cd04639 54 PDAPVRGVMR--RDFPTVSPSATLD-AVLRLMQQGG 86 (111)
T ss_pred CCCcHHHHhc--CCCcEECCCCcHH-HHHHHHHhcC
Confidence 3467999995 4788999999999 6998887765
No 77
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=41.26 E-value=21 Score=20.24 Aligned_cols=33 Identities=18% Similarity=0.347 Sum_probs=26.2
Q ss_pred CCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
...++.++|. .+..+++.++++. ++++.+.+++
T Consensus 65 ~~~~~~~~~~--~~~~~v~~~~~l~-~~~~~~~~~~ 97 (122)
T cd04635 65 ASPTVEKIMS--TPVYSVTPDDSIA-TAVELMLEHD 97 (122)
T ss_pred ccCcHHHHhc--CCCeeECCCCCHH-HHHHHHHHcC
Confidence 4567888985 4578889999999 6998887765
No 78
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=40.62 E-value=24 Score=19.46 Aligned_cols=47 Identities=19% Similarity=0.386 Sum_probs=31.4
Q ss_pred CCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 17 LVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 17 ~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.|.+...+ ++.. . -....+.++|.+ .+.+++.++++. ++++.+.+++
T Consensus 38 ~G~v~~~d--l~~~-~-~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~ 84 (109)
T cd04583 38 LGIVSLES--LEQA-Y-KEAKSLEDIMLE--DVFTVQPDASLR-DVLGLVLKRG 84 (109)
T ss_pred EEEEEHHH--HHHH-h-hcCCcHhHhhcC--CceEECCCCcHH-HHHHHHHHcC
Confidence 46666543 2221 1 133568899975 578899999999 6988887644
No 79
>PF08899 DUF1844: Domain of unknown function (DUF1844); InterPro: IPR014995 This group of proteins are functionally uncharacterised.
Probab=39.78 E-value=30 Score=20.09 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=14.8
Q ss_pred CCCcCCHHHHHHHHHhh
Q psy17076 16 NLVALKKDEVNIISGAL 32 (71)
Q Consensus 16 ~~g~i~~~e~~ml~~~l 32 (71)
-.|.++.+|.++|.+++
T Consensus 51 TkGNL~~~E~~lL~~~L 67 (74)
T PF08899_consen 51 TKGNLDEEEERLLESAL 67 (74)
T ss_pred HccCCCHHHHHHHHHHH
Confidence 35889999999999987
No 80
>PF14044 NETI: NETI protein
Probab=39.16 E-value=30 Score=19.20 Aligned_cols=21 Identities=5% Similarity=0.325 Sum_probs=18.1
Q ss_pred EEeeCCCCccHHHHHHHHHcCC
Q psy17076 50 YMLDIETILNFTVISEIVRTGE 71 (71)
Q Consensus 50 ~~l~~~~~l~~~~~~~i~~sgh 71 (71)
|-+..+.+++ ++++.+.+.||
T Consensus 2 FeV~enETI~-~CL~RM~~eGY 22 (57)
T PF14044_consen 2 FEVEENETIS-DCLARMKKEGY 22 (57)
T ss_pred eeccCCCcHH-HHHHHHHHcCC
Confidence 5577889999 79999999987
No 81
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=38.49 E-value=25 Score=17.79 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=15.1
Q ss_pred cCCHHHHHHHHHhhcCCCceeecc
Q psy17076 19 ALKKDEVNIISGALEMTQKKVEEI 42 (71)
Q Consensus 19 ~i~~~e~~ml~~~l~l~d~~V~eI 42 (71)
.|++.|+.+|.-.+ +.+.+..+|
T Consensus 4 ~L~~~er~vi~~~y-~~~~t~~eI 26 (50)
T PF04545_consen 4 QLPPREREVIRLRY-FEGLTLEEI 26 (50)
T ss_dssp TS-HHHHHHHHHHH-TST-SHHHH
T ss_pred hCCHHHHHHHHHHh-cCCCCHHHH
Confidence 57888888888887 666655543
No 82
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=38.24 E-value=22 Score=27.03 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=27.1
Q ss_pred CceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 36 QKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 36 d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
+..|+++|++ ++.+++.+.++. ++++.+.+++
T Consensus 145 ~~~V~dIMt~--~litv~~~~sL~-eAl~lM~~~~ 176 (475)
T TIGR01303 145 FTQVRDIMST--DLVTAPADTEPR-KAFDLLEHAP 176 (475)
T ss_pred CCCHHHHccC--CceEeCCCCcHH-HHHHHHHHcC
Confidence 3579999985 688999999999 7999888765
No 83
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=37.98 E-value=23 Score=26.91 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=27.2
Q ss_pred CceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 36 QKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 36 d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
+..|+++|++ ++.+++.+.++. ++++.+.+++
T Consensus 147 ~~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~ 178 (479)
T PRK07807 147 FTQVRDVMST--DLVTLPAGTDPR-EAFDLLEAAR 178 (479)
T ss_pred CCCHHHhccC--CceEECCCCcHH-HHHHHHHhcC
Confidence 3569999985 788999999999 7999988765
No 84
>KOG2550|consensus
Probab=37.05 E-value=23 Score=27.28 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=29.5
Q ss_pred CcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHH
Q psy17076 18 VALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEI 66 (71)
Q Consensus 18 g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i 66 (71)
|.+++.+-+.+ +=..+-+.+||||+. ++.+.+-+++ +.-+.+
T Consensus 156 G~vtsrdi~f~----~~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL 197 (503)
T KOG2550|consen 156 GIITSRDIQFL----EDNSLLVSDVMTKNP--VTGAQGITLK-EANEIL 197 (503)
T ss_pred EEEehhhhhhh----hcccchhhhhccccc--ccccccccHH-HHHHHH
Confidence 44566666655 556788999999999 7777777777 344433
No 85
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=36.44 E-value=38 Score=18.67 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=23.9
Q ss_pred eeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 38 KVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 38 ~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.+.++|++ .+.+++.++++. ++++.+.+++
T Consensus 57 ~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~ 86 (111)
T cd04612 57 LVGDVMTR--DPVTASPDETLR-DALKRMAERD 86 (111)
T ss_pred CHHHhccC--CCeEECCCCCHH-HHHHHHHhCC
Confidence 56777764 578899999999 6999887765
No 86
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=35.69 E-value=26 Score=19.58 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=31.8
Q ss_pred CCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 17 LVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 17 ~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.|.+.. ++++.+- .+.+++++|.| .+..++.++++. ++++.+.+.+
T Consensus 38 ~G~v~~--~~l~~~~---~~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~ 83 (109)
T cd04606 38 LGVVSL--RDLLLAD---PDTPVSDIMDT--DVISVSADDDQE-EVARLFEKYD 83 (109)
T ss_pred EEEEEH--HHHhcCC---CcchHHHHhCC--CCeEEcCCCCHH-HHHHHHHHcC
Confidence 566664 3444321 35679999965 488899999998 6888877654
No 87
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=35.30 E-value=36 Score=18.87 Aligned_cols=49 Identities=16% Similarity=0.220 Sum_probs=31.8
Q ss_pred CCCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 16 NLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 16 ~~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
-.|.++..+ ++....+ ....+.++|.+ .+..++.++++. ++++.+.+++
T Consensus 37 ~~G~v~~~~--l~~~~~~-~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~ 85 (110)
T cd04605 37 LVGIVTSWD--ISKAVAR-DKKSVEDIMTR--NVITATPDEPID-VAARKMERHN 85 (110)
T ss_pred EEEEEeHHH--HHHHHhh-CccCHHHhcCC--CCeEECCCCcHH-HHHHHHHHhC
Confidence 356666643 3322222 22458899854 577889999999 6988887764
No 88
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=34.89 E-value=15 Score=21.61 Aligned_cols=45 Identities=11% Similarity=0.106 Sum_probs=29.8
Q ss_pred CCcCCHHHHHHHHHhh---cCCCceeecceeecccEEEeeCCCCccHHHHHHH
Q psy17076 17 LVALKKDEVNIISGAL---EMTQKKVEEIMTKLDDCYMLDIETILNFTVISEI 66 (71)
Q Consensus 17 ~g~i~~~e~~ml~~~l---~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i 66 (71)
.|.++..+ ++..+. .-.+.+|+++|++ ++.+++.+.++. ++.+..
T Consensus 38 ~Gii~~~d--l~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~-~v~~~~ 85 (124)
T cd04608 38 LGMVTLGN--LLSSLSSGKVQPSDPVSKALYK--QFKRVNKNDTLG-KLSRIL 85 (124)
T ss_pred EEEEEHHH--HHHHHHHhccCCCCcHHHHhhc--cceecCCCCCHH-HHHhhc
Confidence 46666543 333222 2246799999976 578899999998 577643
No 89
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=34.61 E-value=53 Score=18.52 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=18.6
Q ss_pred ccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 47 DDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 47 ~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
++++.++.++++. ++.+.+.+++
T Consensus 1 ~~~~~v~~~~~l~-~a~~~~~~~~ 23 (98)
T cd04618 1 SKLVVFDTKLPVK-KAFNALVENG 23 (98)
T ss_pred CeEEEECCCCcHH-HHHHHHHHcC
Confidence 3678899999999 6888887765
No 90
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=33.70 E-value=51 Score=18.23 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=16.7
Q ss_pred ccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 47 DDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 47 ~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
+++..++.+.++. ++++.+.+.+
T Consensus 1 ~~~~~i~~~~~i~-~a~~~~~~~~ 23 (111)
T cd04590 1 TDIVALDADDTLE-EILELIAESG 23 (111)
T ss_pred CceEEEcCCCCHH-HHHHHHhhCC
Confidence 4677888888888 5877776554
No 91
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=31.78 E-value=35 Score=25.69 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=27.4
Q ss_pred CceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 36 QKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 36 d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
+..|+++|++ ..+++++.+.++. ++++.+.+++
T Consensus 146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~ 178 (486)
T PRK05567 146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHR 178 (486)
T ss_pred CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcC
Confidence 4679999984 4688899999999 6999888765
No 92
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=28.82 E-value=59 Score=18.15 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=30.4
Q ss_pred CCcCCHHHHH-HHHHhhcCCCceeecceeecccEEEeeCC--CCccHHHHHHHHHcC
Q psy17076 17 LVALKKDEVN-IISGALEMTQKKVEEIMTKLDDCYMLDIE--TILNFTVISEIVRTG 70 (71)
Q Consensus 17 ~g~i~~~e~~-ml~~~l~l~d~~V~eIMtPR~~v~~l~~~--~~l~~~~~~~i~~sg 70 (71)
.|.+...+.. .+..-....+.++.++|.+ .+.+++.+ .++. ++++.+.+++
T Consensus 37 ~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~~~l~-~a~~~~~~~~ 90 (115)
T cd04620 37 LGIFTERDIVRLTAIGKDLSDLPIGEVMTQ--PVVTLQESEIQDIF-TALSLFRQHQ 90 (115)
T ss_pred EEEEeHHHHHHHHhcCCCccccCHHHhcCC--CcEEEecccccCHH-HHHHHHHHhC
Confidence 5666655421 1111122345789999965 56667666 6777 6888887764
No 93
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=27.81 E-value=46 Score=18.49 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=32.0
Q ss_pred CCcCCHHHHHHHHHhhc--CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 17 LVALKKDEVNIISGALE--MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 17 ~g~i~~~e~~ml~~~l~--l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
-|.+...+ ++..+.+ -.+..+.++|.+ ++.+++.++++. +++..+.+++
T Consensus 37 ~G~v~~~~--l~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~ 87 (112)
T cd04624 37 IGIVTERD--IVRAVAAGIDLDTPVSEIMTR--DLVTVDPDEPVA-EAAKLMRKNN 87 (112)
T ss_pred EEEeeHHH--HHHHHhccCCCccCHHHhccC--CCEEECCCCcHH-HHHHHHHHcC
Confidence 45666654 2222221 124578899864 588899999998 6888887654
No 94
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=27.43 E-value=72 Score=18.11 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=17.8
Q ss_pred cEEEeeCCCCccHHHHHHHHHcC
Q psy17076 48 DCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 48 ~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
++.+++.++++. ++++.+.+++
T Consensus 2 ~~~~i~~~~~l~-~a~~~~~~~~ 23 (120)
T cd04641 2 NIATARPDTPLI-DVLDMLVERR 23 (120)
T ss_pred CcEEEcCCCCHH-HHHHHHHHcC
Confidence 567888999999 6888887765
No 95
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=26.98 E-value=28 Score=20.81 Aligned_cols=19 Identities=26% Similarity=0.539 Sum_probs=15.2
Q ss_pred CHHHHHHHHHhhcCCCcee
Q psy17076 21 KKDEVNIISGALEMTQKKV 39 (71)
Q Consensus 21 ~~~e~~ml~~~l~l~d~~V 39 (71)
++||..||+|+++|...+=
T Consensus 9 ~eDEi~iL~gl~~~~~~~G 27 (98)
T PF04504_consen 9 EEDEIVILQGLIDFRAKTG 27 (98)
T ss_pred chHHHHHHHHHHHHHHhcC
Confidence 5789999999999955443
No 96
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=26.97 E-value=41 Score=18.43 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=23.5
Q ss_pred CceeecceeecccEEEeeCCCCccHHHHHHHHH
Q psy17076 36 QKKVEEIMTKLDDCYMLDIETILNFTVISEIVR 68 (71)
Q Consensus 36 d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~ 68 (71)
+..+.++|.+ .+.+++.++++. +++..+.+
T Consensus 56 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~ 85 (110)
T cd04609 56 SLPVREVMGE--PLPTVDPDAPIE-ELSELLDR 85 (110)
T ss_pred CcCHHHHhcC--CCceeCCCCcHH-HHHHHHHh
Confidence 4678899954 578899999998 68877765
No 97
>PF12426 DUF3674: RNA dependent RNA polymerase; InterPro: IPR024378 This domain is found in the RNA-directed RNA polymerase. It is located towards the N terminus and is approximately 40 amino acids in length. There is a conserved MFNLKF sequence motif. There are two completely conserved residues (E and P) that may be functionally important.
Probab=26.66 E-value=54 Score=17.05 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCcc
Q psy17076 20 LKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILN 59 (71)
Q Consensus 20 i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~ 59 (71)
|..+|+.-|+.+|.|+= .|=+|+.+-|.|+.-...+
T Consensus 2 Ik~eER~aLEAMFNLKF----hi~~~k~~~y~IP~Y~~~~ 37 (41)
T PF12426_consen 2 IKTEERSALEAMFNLKF----HIGGPKTQPYYIPDYRGIP 37 (41)
T ss_pred cchhHHHHHHHHhceee----eeCCcccccccCCCCCCcc
Confidence 56789999999999874 4557777777777654443
No 98
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=26.41 E-value=80 Score=24.06 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=26.8
Q ss_pred CCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
.+.++.++|.+ +..+++.++++. ++++.+.+++
T Consensus 510 ~~~~v~dim~~--~~~~v~~d~~L~-~al~~m~~~~ 542 (574)
T PRK01862 510 TDKTAADYAHT--PFPLLTPDMPLG-DALEHFMAFQ 542 (574)
T ss_pred ccchHHHhccC--CCeeECCCCCHH-HHHHHHHhcC
Confidence 34679999965 467899999999 7999988765
No 99
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=22.79 E-value=89 Score=13.77 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=13.6
Q ss_pred EEEeeCCCCccHHHHHHHHHcC
Q psy17076 49 CYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 49 v~~l~~~~~l~~~~~~~i~~sg 70 (71)
+..++.++++. +++..+.+.+
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~ 22 (49)
T smart00116 2 VVTVSPDTTLE-EALELLREHG 22 (49)
T ss_pred ceEecCCCcHH-HHHHHHHHhC
Confidence 34566777777 5777776554
No 100
>PF06107 DUF951: Bacterial protein of unknown function (DUF951); InterPro: IPR009296 This family consists of several short hypothetical bacterial proteins of unknown function.
Probab=22.08 E-value=32 Score=19.08 Aligned_cols=9 Identities=22% Similarity=0.272 Sum_probs=6.7
Q ss_pred ecceeeccc
Q psy17076 40 EEIMTKLDD 48 (71)
Q Consensus 40 ~eIMtPR~~ 48 (71)
+.||.||.+
T Consensus 39 ~~imlpR~~ 47 (57)
T PF06107_consen 39 RQIMLPRSK 47 (57)
T ss_pred CEEEEeHHH
Confidence 468888875
No 101
>KOG0474|consensus
Probab=21.87 E-value=53 Score=26.66 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=29.4
Q ss_pred CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076 34 MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE 71 (71)
Q Consensus 34 l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh 71 (71)
++..+|+|||.+ .+++++.-.... .+.+.+..+.|
T Consensus 579 mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~H 613 (762)
T KOG0474|consen 579 MRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNH 613 (762)
T ss_pred hhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCc
Confidence 467789999999 999999999999 68888777655
No 102
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=21.81 E-value=1e+02 Score=17.53 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=21.7
Q ss_pred cceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 41 EIMTKLDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 41 eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
++| ...+.+++.+.++. ++++.+.+++
T Consensus 72 ~~~--~~~~~~v~~~~~l~-~a~~~m~~~~ 98 (123)
T cd04627 72 TIG--TSDVISINGDQPLI-DALHLMHNEG 98 (123)
T ss_pred ccC--cCCceEeCCCCCHH-HHHHHHHHcC
Confidence 355 45688999999999 6999988875
No 103
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=21.34 E-value=60 Score=19.73 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=11.1
Q ss_pred cCCHHHHHHHHHhhc
Q psy17076 19 ALKKDEVNIISGALE 33 (71)
Q Consensus 19 ~i~~~e~~ml~~~l~ 33 (71)
.|+++|+++|.+||.
T Consensus 2 ~Lt~eE~~~I~~Vl~ 16 (118)
T PF02318_consen 2 HLTEEEREIILQVLQ 16 (118)
T ss_dssp TS-CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 477888999888874
No 104
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=21.30 E-value=1.1e+02 Score=17.46 Aligned_cols=22 Identities=5% Similarity=0.081 Sum_probs=16.4
Q ss_pred cEEEeeCCCCccHHHHHHHHHcC
Q psy17076 48 DCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 48 ~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
+++.++.+.++. ++++.+.+++
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~ 23 (126)
T cd04642 2 KVVSIDSDERVL-DAFKLMRKNN 23 (126)
T ss_pred CeEEECCCccHH-HHHHHHHHhC
Confidence 567788888888 6887776554
No 105
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=21.04 E-value=57 Score=18.91 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=24.3
Q ss_pred HhhcCCCceeecceeecccEEEeeCCCC
Q psy17076 30 GALEMTQKKVEEIMTKLDDCYMLDIETI 57 (71)
Q Consensus 30 ~~l~l~d~~V~eIMtPR~~v~~l~~~~~ 57 (71)
++|.|.|..=+.+.+|...|-.++....
T Consensus 38 ~~l~LtD~kGr~~lVp~~~iaYVeiG~~ 65 (74)
T PF11305_consen 38 GVLTLTDEKGRRVLVPAASIAYVEIGSE 65 (74)
T ss_pred ceEEEEeCCCCEEEEECCcEEEEEEcCC
Confidence 4588889999999999999999988765
No 106
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=20.72 E-value=1.2e+02 Score=17.07 Aligned_cols=24 Identities=13% Similarity=0.045 Sum_probs=17.4
Q ss_pred cccEEEeeCCCCccHHHHHHHHHcC
Q psy17076 46 LDDCYMLDIETILNFTVISEIVRTG 70 (71)
Q Consensus 46 R~~v~~l~~~~~l~~~~~~~i~~sg 70 (71)
+.++..++.+.++. ++.+.+.+.+
T Consensus 1 ~~~~~~~~~~~~~~-~~~~~~~~~~ 24 (105)
T cd04591 1 VPLVVLLPEGMTVE-DLESLLSTTS 24 (105)
T ss_pred CCceEEecccccHH-HHHHHHHhCC
Confidence 35677888888888 5887776653
Done!