Query psy17077
Match_columns 83
No_of_seqs 110 out of 807
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 21:17:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17077.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17077hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lw4_A Transcription elongatio 25.7 24 0.00081 21.9 1.0 21 22-42 82-102 (113)
2 2jaf_A Halorhodopsin, HR; chro 16.5 2.9E+02 0.0098 19.3 7.2 38 23-62 179-216 (274)
3 3ndq_A Transcription elongatio 16.3 22 0.00074 21.9 -0.7 21 22-42 86-106 (108)
4 1oed_C Acetylcholine receptor 14.9 1.4E+02 0.0048 20.8 3.2 19 14-32 40-58 (260)
5 2dme_A PHD finger protein 3; P 14.1 22 0.00077 22.2 -1.1 20 22-41 85-104 (120)
6 1oed_B Acetylcholine receptor 13.5 1.6E+02 0.0056 20.3 3.2 19 14-32 40-58 (250)
7 1oed_A Acetylcholine receptor 13.3 1.7E+02 0.0058 19.9 3.2 19 14-32 40-58 (227)
8 1oed_E Acetylcholine receptor 13.0 1.7E+02 0.0059 20.3 3.2 19 14-32 41-59 (260)
9 2htg_A NHE-1, NHE1 isoform of 11.4 62 0.0021 15.4 0.3 9 20-28 7-15 (28)
10 3ug9_A Archaeal-type opsin 1, 11.3 4.7E+02 0.016 19.1 7.1 20 44-63 230-249 (333)
No 1
>2lw4_A Transcription elongation factor A protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=25.70 E-value=24 Score=21.88 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.2
Q ss_pred HHHHhhhhHHHHHHhHHHHHH
Q psy17077 22 VIIGEILPQSIGSRYGLAIGA 42 (83)
Q Consensus 22 lifGEIiPK~ia~~~~~~ia~ 42 (83)
++-|||-|..++...++.+|.
T Consensus 82 vl~G~i~p~~l~~Ms~eEmAs 102 (113)
T 2lw4_A 82 VLCGAITPQQIAVMTSEEMAS 102 (113)
T ss_dssp HHTTSSCHHHHHHSCHHHHHC
T ss_pred HHcCCCCHHHHhcCCHHHcCC
Confidence 677999999999999988874
No 2
>2jaf_A Halorhodopsin, HR; chromophore, chloride pump, ION transport, membrane, chloride, receptor, ION pump, transport, sensory transduction; HET: BOG PLM RET; 1.7A {Halobacterium salinarium} PDB: 2jag_A* 1e12_A*
Probab=16.50 E-value=2.9e+02 Score=19.34 Aligned_cols=38 Identities=16% Similarity=0.317 Sum_probs=19.7
Q ss_pred HHHhhhhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy17077 23 IIGEILPQSIGSRYGLAIGAHTIYLTRLAMLITFPLSYPM 62 (83)
Q Consensus 23 ifGEIiPK~ia~~~~~~ia~~~a~~v~~~~~il~Pl~~~l 62 (83)
+++|. .|....+ +.+-+......+-.+.+..||+.|.+
T Consensus 179 l~~~~-~~~a~~~-~v~~~f~~l~~~v~v~W~iYPI~w~l 216 (274)
T 2jaf_A 179 LVTDW-AASASSA-GTAEIFDTLRVLVVVLWLGYPIVWAV 216 (274)
T ss_dssp HHTHH-HHHHHHH-TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34443 4433333 32333333344455667779998866
No 3
>3ndq_A Transcription elongation factor A protein 1; helix bundle; 1.93A {Homo sapiens}
Probab=16.27 E-value=22 Score=21.85 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=15.2
Q ss_pred HHHHhhhhHHHHHHhHHHHHH
Q psy17077 22 VIIGEILPQSIGSRYGLAIGA 42 (83)
Q Consensus 22 lifGEIiPK~ia~~~~~~ia~ 42 (83)
++-|||.|+.++...++++|.
T Consensus 86 vl~G~isp~~lv~Ms~eEmAS 106 (108)
T 3ndq_A 86 VLCGNIPPDLFARMTAEEMAS 106 (108)
T ss_dssp HHHTSSCHHHHHHCCTTTC--
T ss_pred HHcCCcCHHHHhCCCHHHccC
Confidence 567889999888877776653
No 4
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=14.93 E-value=1.4e+02 Score=20.77 Aligned_cols=19 Identities=16% Similarity=0.497 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhhhHHH
Q psy17077 14 VIGTTITLVIIGEILPQSI 32 (83)
Q Consensus 14 ~~i~T~lIlifGEIiPK~i 32 (83)
.+.+|+.++.+.|.+|++=
T Consensus 40 lLs~tvfl~~~~~~lP~tS 58 (260)
T 1oed_C 40 LLAQAVFLLLTSQRLPETA 58 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCc
Confidence 3445788899999999973
No 5
>2dme_A PHD finger protein 3; PHF3, TFS2M, glioblastoma multiforme, brain tumor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=14.13 E-value=22 Score=22.18 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=15.6
Q ss_pred HHHHhhhhHHHHHHhHHHHH
Q psy17077 22 VIIGEILPQSIGSRYGLAIG 41 (83)
Q Consensus 22 lifGEIiPK~ia~~~~~~ia 41 (83)
++-|||.|..++..-++.+|
T Consensus 85 vl~G~i~p~~lv~Ms~eEmA 104 (120)
T 2dme_A 85 VLKGEVTPDHLIRMSPEELA 104 (120)
T ss_dssp HHHTSSCTTHHHHSCTTTTT
T ss_pred HHcCCCCHHHHhcCCHHHcC
Confidence 56789999988887777665
No 6
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=13.46 E-value=1.6e+02 Score=20.29 Aligned_cols=19 Identities=16% Similarity=0.558 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhhhhHHH
Q psy17077 14 VIGTTITLVIIGEILPQSI 32 (83)
Q Consensus 14 ~~i~T~lIlifGEIiPK~i 32 (83)
.+.+|+.++.+.|.+|++=
T Consensus 40 lLs~tvfl~~v~~~lP~tS 58 (250)
T 1oed_B 40 LLAVTVFLLLLADKVPETS 58 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCc
Confidence 3345778899999999964
No 7
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B
Probab=13.26 E-value=1.7e+02 Score=19.90 Aligned_cols=19 Identities=26% Similarity=0.586 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhhhHHH
Q psy17077 14 VIGTTITLVIIGEILPQSI 32 (83)
Q Consensus 14 ~~i~T~lIlifGEIiPK~i 32 (83)
.+.+|+..+.+.|.+|++=
T Consensus 40 lLs~tvfl~~v~~~lP~tS 58 (227)
T 1oed_A 40 LLSLTVFLLVIVELIPSTS 58 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcc
Confidence 3345778899999999964
No 8
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1
Probab=12.97 E-value=1.7e+02 Score=20.31 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhhhHHH
Q psy17077 14 VIGTTITLVIIGEILPQSI 32 (83)
Q Consensus 14 ~~i~T~lIlifGEIiPK~i 32 (83)
.+.+|+.++.+.|.+|++=
T Consensus 41 lLs~tvfl~~~~~~lP~tS 59 (260)
T 1oed_E 41 LLAQTIFLFLIAQKVPETS 59 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCc
Confidence 3445778899999999973
No 9
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}
Probab=11.41 E-value=62 Score=15.42 Aligned_cols=9 Identities=33% Similarity=0.770 Sum_probs=6.1
Q ss_pred HHHHHHhhh
Q psy17077 20 TLVIIGEIL 28 (83)
Q Consensus 20 lIlifGEIi 28 (83)
-+++|||-+
T Consensus 7 ~~lvfGESl 15 (28)
T 2htg_A 7 HILVFGESL 15 (28)
T ss_dssp HHHHTTTTT
T ss_pred EEEEEeeee
Confidence 467888854
No 10
>3ug9_A Archaeal-type opsin 1, archaeal-type opsin 2; microbialrhodopsin, seven-transmembrane, light-gated cation membrane protein; HET: RET OLA; 2.30A {Chlamydomonas reinhardtii}
Probab=11.27 E-value=4.7e+02 Score=19.05 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy17077 44 TIYLTRLAMLITFPLSYPMG 63 (83)
Q Consensus 44 ~a~~v~~~~~il~Pl~~~l~ 63 (83)
.....-.+.+..||+.|.++
T Consensus 230 ~Lr~~vlV~WaIYPIvW~Lg 249 (333)
T 3ug9_A 230 GMAWLFFVSWGMFPILFILG 249 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhHHHeec
Confidence 33445556677899999875
Done!