Query psy17077
Match_columns 83
No_of_seqs 110 out of 807
Neff 6.1
Searched_HMMs 13730
Date Fri Aug 16 21:17:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17077.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17077hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oedc_ f.36.1.1 (C:) Acetylch 31.4 20 0.0015 22.2 3.2 18 14-31 40-57 (260)
2 d1oedb_ f.36.1.1 (B:) Acetylch 26.2 28 0.002 21.5 3.2 19 14-32 40-58 (250)
3 d1oede_ f.36.1.1 (E:) Acetylch 23.6 33 0.0024 21.2 3.2 18 14-31 41-58 (260)
4 d1oeda_ f.36.1.1 (A:) Acetylch 20.7 42 0.0031 20.4 3.2 19 13-31 39-57 (227)
5 d1xioa_ f.13.1.1 (A:) Sensory 15.3 1.3E+02 0.0092 18.5 6.8 20 44-63 167-186 (226)
6 d1h2sa_ f.13.1.1 (A:) Sensory 14.4 1.4E+02 0.0099 18.4 5.3 23 41-63 159-181 (225)
7 d1qnta1 a.4.2.1 (A:92-176) O6- 14.2 38 0.0028 18.4 1.5 18 66-83 39-56 (85)
8 d1m0ka_ f.13.1.1 (A:) Bacterio 13.4 1.5E+02 0.011 18.4 6.0 19 44-62 169-187 (227)
9 d1sfea1 a.4.2.1 (A:93-176) Ada 12.8 38 0.0027 18.4 1.2 17 67-83 40-56 (84)
10 d1mgta1 a.4.2.1 (A:89-169) O6- 11.6 43 0.0031 18.1 1.2 18 66-83 38-55 (81)
No 1
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=31.42 E-value=20 Score=22.21 Aligned_cols=18 Identities=17% Similarity=0.540 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhhhHH
Q psy17077 14 VIGTTITLVIIGEILPQS 31 (83)
Q Consensus 14 ~~i~T~lIlifGEIiPK~ 31 (83)
.+.+|+..+..+|.+|++
T Consensus 40 lLs~~vf~~~v~~~lP~t 57 (260)
T d1oedc_ 40 LLAQAVFLLLTSQRLPET 57 (260)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 344688899999999986
No 2
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=26.19 E-value=28 Score=21.47 Aligned_cols=19 Identities=16% Similarity=0.558 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhhhhHHH
Q psy17077 14 VIGTTITLVIIGEILPQSI 32 (83)
Q Consensus 14 ~~i~T~lIlifGEIiPK~i 32 (83)
.+.+|+..++++|.+|++=
T Consensus 40 lL~~~~~~~~v~~~~P~~s 58 (250)
T d1oedb_ 40 LLAVTVFLLLLADKVPETS 58 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCc
Confidence 3446788899999999863
No 3
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=23.57 E-value=33 Score=21.22 Aligned_cols=18 Identities=28% Similarity=0.611 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhhhhHH
Q psy17077 14 VIGTTITLVIIGEILPQS 31 (83)
Q Consensus 14 ~~i~T~lIlifGEIiPK~ 31 (83)
.+.+|+..+..+|.+||+
T Consensus 41 lLs~~~~~~~v~~~lP~t 58 (260)
T d1oede_ 41 LLAQTIFLFLIAQKVPET 58 (260)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 334577788999999996
No 4
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=20.73 E-value=42 Score=20.44 Aligned_cols=19 Identities=26% Similarity=0.620 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhhhhHH
Q psy17077 13 AVIGTTITLVIIGEILPQS 31 (83)
Q Consensus 13 a~~i~T~lIlifGEIiPK~ 31 (83)
..+.+|+.+..++|.+||+
T Consensus 39 ~lL~~~v~~~~v~~~lP~t 57 (227)
T d1oeda_ 39 VLLSLTVFLLVIVELIPST 57 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCc
Confidence 3444678889999999997
No 5
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=15.32 E-value=1.3e+02 Score=18.48 Aligned_cols=20 Identities=15% Similarity=0.406 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy17077 44 TIYLTRLAMLITFPLSYPMG 63 (83)
Q Consensus 44 ~a~~v~~~~~il~Pl~~~l~ 63 (83)
...-.-.+.+..||+.|.++
T Consensus 167 ~l~~~~~v~W~~YPi~~~l~ 186 (226)
T d1xioa_ 167 KLVTYFTVLWIGYPIVWIIG 186 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34445556788899999774
No 6
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium pharaonis [TaxId: 2257]}
Probab=14.43 E-value=1.4e+02 Score=18.41 Aligned_cols=23 Identities=9% Similarity=0.197 Sum_probs=15.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q psy17077 41 GAHTIYLTRLAMLITFPLSYPMG 63 (83)
Q Consensus 41 a~~~a~~v~~~~~il~Pl~~~l~ 63 (83)
+......+..+.+..||+.|.++
T Consensus 159 ~~~~l~~~~~v~W~iYPi~y~l~ 181 (225)
T d1h2sa_ 159 LYVRLRNLTVILWAIYPFIWLLG 181 (225)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444555667777899998774
No 7
>d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.23 E-value=38 Score=18.42 Aligned_cols=18 Identities=17% Similarity=0.473 Sum_probs=13.1
Q ss_pred hHHHhccCCCceecccCC
Q psy17077 66 LDFSLIKGTTSMRLPCKR 83 (83)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~ 83 (83)
+...+++++-.+.+||.|
T Consensus 39 Vg~a~~~Np~~~~iPcHR 56 (85)
T d1qnta1 39 VGGAMRGNPVPILIPCHR 56 (85)
T ss_dssp HHHHHTTCSSBTTBCGGG
T ss_pred HHHHHHhCCCCCCCccee
Confidence 344567788888889876
No 8
>d1m0ka_ f.13.1.1 (A:) Bacteriorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=13.40 E-value=1.5e+02 Score=18.36 Aligned_cols=19 Identities=5% Similarity=0.324 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy17077 44 TIYLTRLAMLITFPLSYPM 62 (83)
Q Consensus 44 ~a~~v~~~~~il~Pl~~~l 62 (83)
....+..+.+.+||+.|.+
T Consensus 169 ~l~~~~~v~W~iYPI~~~l 187 (227)
T d1m0ka_ 169 VLRNVTVVLWSAYPVVWLI 187 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4455556778889999976
No 9
>d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia coli [TaxId: 562]}
Probab=12.82 E-value=38 Score=18.43 Aligned_cols=17 Identities=18% Similarity=0.458 Sum_probs=12.3
Q ss_pred HHHhccCCCceecccCC
Q psy17077 67 DFSLIKGTTSMRLPCKR 83 (83)
Q Consensus 67 ~~~~g~~~~~~~~~~~~ 83 (83)
...++.++-.+.+||.|
T Consensus 40 g~a~~~Np~~~~iPcHR 56 (84)
T d1sfea1 40 ASACAANKLAIVIPCHR 56 (84)
T ss_dssp HHHHHTCCBBTTBCGGG
T ss_pred HHHHhcCCCCCcCCcee
Confidence 34557788888888876
No 10
>d1mgta1 a.4.2.1 (A:89-169) O6-alkylguanine-DNA alkyltransferase {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=11.58 E-value=43 Score=18.10 Aligned_cols=18 Identities=17% Similarity=0.499 Sum_probs=12.3
Q ss_pred hHHHhccCCCceecccCC
Q psy17077 66 LDFSLIKGTTSMRLPCKR 83 (83)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~ 83 (83)
+...++.++-.+.+||.|
T Consensus 38 Vg~a~~~Np~~~~IPcHR 55 (81)
T d1mgta1 38 VGGAMKRNPYPIVVPCHR 55 (81)
T ss_dssp HHHHHHTCSCTTTSCGGG
T ss_pred HHHHHHhCCCcccccceE
Confidence 344556677788888876
Done!