RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy17077
         (83 letters)



>gnl|CDD|216595 pfam01595, DUF21, Domain of unknown function DUF21.  This
           transmembrane region has no known function. Many of the
           sequences in this family are annotated as hemolysins,
           however this is due to a similarity to Treponema
           hyodysenteriae hemolysin C that does not contain this
           domain. This domain is found in the N-terminus of the
           proteins adjacent to two intracellular CBS domains
           pfam00571.
          Length = 182

 Score = 46.8 bits (112), Expect = 6e-08
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 11  LVAVIGTTITLVIIGEILPQSIGSRYGLAIGAHTIYLTRLAMLITFPLSYPMGKALDFSL 70
           L+A + +T+ +++ GEILP+++  R    I        R+ M + +PL + + K  +  L
Sbjct: 89  LLATLVSTLLILVFGEILPKTLARRNPERIALRLAPPLRVLMKLLYPLVWLLSKLSNLLL 148


>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS
           domains [General function prediction only].
          Length = 429

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 13/68 (19%), Positives = 27/68 (39%)

Query: 3   LLIINTKGLVAVIGTTITLVIIGEILPQSIGSRYGLAIGAHTIYLTRLAMLITFPLSYPM 62
           L  +     ++    T   V+ GE++P+SI  R    +        R    + +PL + +
Sbjct: 90  LEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLL 149

Query: 63  GKALDFSL 70
            +  +  L
Sbjct: 150 NRIANAIL 157


>gnl|CDD|132559 TIGR03520, GldE, gliding motility-associated protein GldE.  Members
           of this protein family are exclusive to the
           Bacteroidetes phylum (previously
           Cytophaga-Flavobacteria-Bacteroides). GldC is a protein
           linked to a type of rapid surface gliding motility found
           in certain Bacteroidetes, such as Flavobacterium
           johnsoniae and Cytophaga hutchinsonii. GldE was
           discovered because of its adjacency to GldD in F.
           johnsonii. Overexpression of GldE partially supresses
           the effects of a GldB point mutant suggesting that GldB
           and GldE interact. Gliding motility appears closely
           linked to chitin utilization in the model species
           Flavobacterium johnsoniae. Not all Bacteroidetes with
           members of this protein family appear to have all of the
           genes associated with gliding motility and in fact some
           do not appear to express the gliding phenotype.
          Length = 408

 Score = 33.5 bits (77), Expect = 0.005
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 11  LVAVIGTTITLVIIGEILPQSIGSRYGLAIGAHTIYLTRLAMLITFPLSYPM 62
           L+ V+  T  +++ GEILP+   +R  L       Y   +   +  P+S P+
Sbjct: 88  LIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPL 139


>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
           biosynthesis, transport, and catabolism].
          Length = 542

 Score = 25.5 bits (56), Expect = 3.4
 Identities = 9/23 (39%), Positives = 10/23 (43%)

Query: 39  AIGAHTIYLTRLAMLITFPLSYP 61
                T+YL  L     FPLS P
Sbjct: 226 GFDQQTVYLCALPAAHNFPLSSP 248


>gnl|CDD|223956 COG1025, Ptr, Secreted/periplasmic Zn-dependent peptidases,
           insulinase-like [Posttranslational modification, protein
           turnover, chaperones].
          Length = 937

 Score = 25.0 bits (55), Expect = 5.4
 Identities = 12/39 (30%), Positives = 14/39 (35%), Gaps = 1/39 (2%)

Query: 42  AHTIYLTRLAMLITFPLSYPMGKA-LDFSLIKGTTSMRL 79
             T     LA      LSY    A L FSL   +  + L
Sbjct: 546 VLTELYAYLANDALDKLSYQASLAGLSFSLAANSNGLDL 584


>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit.
           Members of this family, all eukaryotic, are part of the
           group II chaperonin complex called CCT (chaperonin
           containing TCP-1) or TRiC. The archaeal equivalent group
           II chaperonin is often called the thermosome. Both are
           somewhat related to the group I chaperonin of bacterial,
           GroEL/GroES. This family consists exclusively of the CCT
           zeta chain (part of a paralogous family) from animals,
           plants, fungi, and other eukaryotes.
          Length = 531

 Score = 24.3 bits (53), Expect = 8.7
 Identities = 9/16 (56%), Positives = 14/16 (87%)

Query: 16  GTTITLVIIGEILPQS 31
           GTT T+++IGE+L Q+
Sbjct: 89  GTTSTVILIGELLKQA 104


>gnl|CDD|235333 PRK05033, truB, tRNA pseudouridine synthase B; Provisional.
          Length = 312

 Score = 24.4 bits (54), Expect = 8.7
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 12/39 (30%)

Query: 16  GTTI-TLVI-IGEILPQSIGSRYGLAIGAHTIYLTRLAM 52
           GT I TLV  +GE L            GAH IYL R  +
Sbjct: 175 GTYIRTLVDDLGEKL----------GCGAHVIYLRRTQV 203


>gnl|CDD|226911 COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic
           ion transport and metabolism].
          Length = 423

 Score = 24.2 bits (53), Expect = 9.5
 Identities = 7/25 (28%), Positives = 15/25 (60%)

Query: 12  VAVIGTTITLVIIGEILPQSIGSRY 36
           +A    T  +++  E+LP++I + Y
Sbjct: 92  IATGVLTFVILVFAEVLPKTIAALY 116


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.327    0.144    0.412 

Gapped
Lambda     K      H
   0.267   0.0762    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,212,150
Number of extensions: 350914
Number of successful extensions: 498
Number of sequences better than 10.0: 1
Number of HSP's gapped: 497
Number of HSP's successfully gapped: 28
Length of query: 83
Length of database: 10,937,602
Length adjustment: 52
Effective length of query: 31
Effective length of database: 8,631,194
Effective search space: 267567014
Effective search space used: 267567014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.1 bits)