RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17077
         (83 letters)



>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC
           family {Brevibacterium sterolicum [TaxId: 1702]}
          Length = 370

 Score = 24.1 bits (51), Expect = 2.9
 Identities = 9/42 (21%), Positives = 16/42 (38%)

Query: 1   MDLLIINTKGLVAVIGTTITLVIIGEILPQSIGSRYGLAIGA 42
             LL   T     +       V+ G ++P ++G    + I A
Sbjct: 315 GVLLNKATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITA 356


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.144    0.412 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 285,523
Number of extensions: 10760
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 2
Length of query: 83
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 34
Effective length of database: 1,734,826
Effective search space: 58984084
Effective search space used: 58984084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.4 bits)