BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17078
         (68 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2E1Q|A Chain A, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
           Glu803val
 pdb|2E1Q|B Chain B, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
           Glu803val
 pdb|2E1Q|C Chain C, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
           Glu803val
 pdb|2E1Q|D Chain D, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
           Glu803val
          Length = 1333

 Score = 26.6 bits (57), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 4   KFKTGIPMEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYML 52
           ++K G     T  +VAL+ D  + +    +++Q  +E  +  +D+CY +
Sbjct: 846 RYKVG--FMKTGTVVALEVDHFSNVGNTQDLSQSIMERALFHMDNCYKI 892


>pdb|2CKJ|A Chain A, Human Milk Xanthine Oxidoreductase
 pdb|2CKJ|B Chain B, Human Milk Xanthine Oxidoreductase
 pdb|2CKJ|C Chain C, Human Milk Xanthine Oxidoreductase
 pdb|2CKJ|D Chain D, Human Milk Xanthine Oxidoreductase
          Length = 1333

 Score = 26.6 bits (57), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 4   KFKTGIPMEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYML 52
           ++K G     T  +VAL+ D  + +    +++Q  +E  +  +D+CY +
Sbjct: 846 RYKVG--FMKTGTVVALEVDHFSNVGNTQDLSQSIMERALFHMDNCYKI 892


>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
 pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
          Length = 936

 Score = 26.6 bits (57), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 8/45 (17%)

Query: 12  EATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIET 56
           E    L+AL KDE N           K+EE++  LDD Y  + +T
Sbjct: 596 EKEPELIALSKDETN--------ENPKLEELVCILDDAYRYNPQT 632


>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
 pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
           Dsrna And Atp Transition State Analogue
 pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
           Dsrna And Atp Transition State Analogue
          Length = 556

 Score = 26.2 bits (56), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 8/45 (17%)

Query: 12  EATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIET 56
           E    L+AL KDE N           K+EE++  LDD Y  + +T
Sbjct: 355 EKEPELIALSKDETN--------ENPKLEELVCILDDAYRYNPQT 391


>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
 pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
 pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
 pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
          Length = 797

 Score = 26.2 bits (56), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 8/45 (17%)

Query: 12  EATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIET 56
           E    L+AL KDE N           K+EE++  LDD Y  + +T
Sbjct: 596 EKEPELIALSKDETN--------ENPKLEELVCILDDAYRYNPQT 632


>pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70,
           Selenomethionine- Labeled Crystals
 pdb|3D2E|C Chain C, Crystal Structure Of A Complex Of Sse1p And Hsp70,
           Selenomethionine- Labeled Crystals
          Length = 675

 Score = 25.0 bits (53), Expect = 9.9,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 22/35 (62%)

Query: 11  MEATSNLVALKKDEVNIISGALEMTQKKVEEIMTK 45
           +EA S+   +KKD++ I++    +  KK+ E++ K
Sbjct: 501 IEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEK 535


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.344 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,565,569
Number of Sequences: 62578
Number of extensions: 43559
Number of successful extensions: 229
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 223
Number of HSP's gapped (non-prelim): 14
length of query: 68
length of database: 14,973,337
effective HSP length: 38
effective length of query: 30
effective length of database: 12,595,373
effective search space: 377861190
effective search space used: 377861190
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)