Query psy17078
Match_columns 68
No_of_seqs 120 out of 464
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 21:18:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17078.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17078hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oi8_A Uncharacterized protein 98.9 6.3E-10 2.2E-14 69.0 1.6 57 2-60 5-61 (156)
2 3lhh_A CBS domain protein; str 98.7 2E-09 6.7E-14 67.9 0.5 58 2-61 9-66 (172)
3 3ocm_A Putative membrane prote 98.5 3.4E-08 1.2E-12 62.9 2.4 47 14-60 13-59 (173)
4 3lv9_A Putative transporter; C 98.5 3.7E-08 1.2E-12 60.0 1.0 46 16-61 2-47 (148)
5 3oco_A Hemolysin-like protein 97.9 6E-07 2E-11 55.0 -1.3 43 19-61 2-44 (153)
6 3t4n_C Nuclear protein SNF4; C 97.7 3E-06 1E-10 56.9 -0.6 46 16-61 8-54 (323)
7 2qrd_G Protein C1556.08C; AMPK 97.5 3.1E-05 1E-09 52.2 1.3 44 18-61 2-46 (334)
8 3kxr_A Magnesium transporter, 97.0 0.00044 1.5E-08 44.9 2.9 40 19-60 36-75 (205)
9 3k6e_A CBS domain protein; str 96.6 0.00045 1.5E-08 42.9 0.6 36 26-61 3-39 (156)
10 2v8q_E 5'-AMP-activated protei 96.4 0.00029 9.9E-09 47.4 -1.0 45 15-61 15-59 (330)
11 3i8n_A Uncharacterized protein 95.7 0.0022 7.5E-08 37.7 0.5 28 33-60 2-29 (130)
12 3jtf_A Magnesium and cobalt ef 95.0 0.0045 1.6E-07 36.4 0.3 27 34-60 2-28 (129)
13 2yvy_A MGTE, Mg2+ transporter 95.0 0.011 3.7E-07 39.5 2.1 41 18-60 116-156 (278)
14 3lfr_A Putative metal ION tran 94.9 0.0049 1.7E-07 36.6 0.2 26 35-60 1-26 (136)
15 2zy9_A Mg2+ transporter MGTE; 94.9 0.021 7E-07 41.6 3.5 41 18-60 136-176 (473)
16 3hf7_A Uncharacterized CBS-dom 94.8 0.0067 2.3E-07 35.8 0.6 25 36-60 1-25 (130)
17 3ctu_A CBS domain protein; str 94.2 0.012 4E-07 35.4 0.7 35 27-61 5-39 (156)
18 3nqr_A Magnesium and cobalt ef 93.9 0.011 3.9E-07 34.4 0.2 27 35-61 1-27 (127)
19 2oux_A Magnesium transporter; 92.8 0.046 1.6E-06 36.8 1.8 41 18-60 118-158 (286)
20 2emq_A Hypothetical conserved 92.1 0.034 1.2E-06 33.1 0.4 33 28-60 2-34 (157)
21 3k2v_A Putative D-arabinose 5- 88.3 0.063 2.2E-06 32.0 -0.7 39 22-60 10-51 (149)
22 1yav_A Hypothetical protein BS 88.1 0.11 3.8E-06 31.1 0.3 30 32-61 9-38 (159)
23 3lqn_A CBS domain protein; csg 86.6 0.064 2.2E-06 31.7 -1.4 30 31-60 9-38 (150)
24 4gqw_A CBS domain-containing p 86.0 0.21 7.3E-06 29.0 0.7 26 35-60 3-28 (152)
25 3org_A CMCLC; transporter, tra 84.8 0.13 4.5E-06 38.6 -0.8 26 35-60 451-476 (632)
26 4esy_A CBS domain containing m 84.4 0.41 1.4E-05 29.0 1.5 35 23-61 6-40 (170)
27 2rc3_A CBS domain; in SITU pro 78.8 0.21 7.1E-06 28.9 -1.3 24 38-61 7-31 (135)
28 3sl7_A CBS domain-containing p 78.4 0.41 1.4E-05 28.7 -0.0 25 36-60 3-27 (180)
29 2pfi_A Chloride channel protei 77.0 0.49 1.7E-05 27.9 -0.0 32 27-60 3-34 (164)
30 2ef7_A Hypothetical protein ST 76.2 0.95 3.3E-05 25.8 1.1 25 34-60 1-25 (133)
31 3fhm_A Uncharacterized protein 73.5 0.43 1.5E-05 28.7 -0.9 31 30-60 17-48 (165)
32 2yzi_A Hypothetical protein PH 72.8 1.2 4E-05 25.6 0.9 27 32-60 2-28 (138)
33 4fry_A Putative signal-transdu 71.6 0.53 1.8E-05 27.9 -0.8 25 37-61 7-35 (157)
34 3fv6_A YQZB protein; CBS domai 70.6 2.3 7.8E-05 25.2 1.9 42 17-60 60-104 (159)
35 3ghd_A A cystathionine beta-sy 67.7 1.1 3.9E-05 24.2 0.1 29 17-45 35-65 (70)
36 2j9l_A Chloride channel protei 67.5 0.58 2E-05 28.2 -1.3 27 34-60 8-38 (185)
37 3l2b_A Probable manganase-depe 66.3 1.1 3.6E-05 28.7 -0.3 25 35-60 183-207 (245)
38 2p9m_A Hypothetical protein MJ 60.8 2.5 8.6E-05 24.0 0.7 25 34-60 5-29 (138)
39 3ddj_A CBS domain-containing p 59.3 2.7 9.4E-05 27.2 0.7 30 29-60 85-114 (296)
40 1pbj_A Hypothetical protein; s 58.1 2.8 9.7E-05 23.3 0.6 42 17-60 44-86 (125)
41 1o50_A CBS domain-containing p 55.1 2.2 7.4E-05 25.2 -0.3 26 34-61 13-38 (157)
42 3kh5_A Protein MJ1225; AMPK, A 52.3 3.3 0.00011 26.2 0.2 28 32-61 79-106 (280)
43 1y5h_A Hypothetical protein RV 46.8 3.6 0.00012 23.2 -0.2 27 33-61 4-30 (133)
44 2rih_A Conserved protein with 46.7 6.9 0.00023 22.4 1.0 22 37-60 5-26 (141)
45 2o16_A Acetoin utilization pro 45.9 5.7 0.00019 23.5 0.5 24 35-60 3-26 (160)
46 3fio_A A cystathionine beta-sy 43.0 16 0.00056 18.2 2.1 28 17-46 35-66 (70)
47 3kpb_A Uncharacterized protein 39.6 4.5 0.00015 22.4 -0.6 22 37-60 1-22 (122)
48 3nwz_A BH2602 protein; structu 39.1 20 0.00069 22.1 2.4 29 1-33 1-34 (176)
49 4fxs_A Inosine-5'-monophosphat 38.9 14 0.00049 26.9 1.8 26 35-60 147-172 (496)
50 2d4z_A Chloride channel protei 38.1 7 0.00024 26.0 0.1 26 33-60 9-34 (250)
51 1zfj_A Inosine monophosphate d 36.6 7.3 0.00025 27.8 -0.0 31 22-59 80-110 (491)
52 1pvm_A Conserved hypothetical 35.6 21 0.00073 21.4 2.0 40 17-60 53-96 (184)
53 4avf_A Inosine-5'-monophosphat 34.4 8.4 0.00029 28.1 0.0 26 35-60 145-170 (490)
54 1vr9_A CBS domain protein/ACT 29.5 8.1 0.00028 24.3 -0.7 23 36-60 71-93 (213)
55 1me8_A Inosine-5'-monophosphat 28.5 12 0.00041 27.2 0.0 27 35-61 159-185 (503)
56 3gby_A Uncharacterized protein 26.0 19 0.00066 20.1 0.6 24 35-60 3-26 (128)
57 1vrd_A Inosine-5'-monophosphat 23.5 17 0.00058 26.0 0.0 25 36-60 154-178 (494)
58 2cu0_A Inosine-5'-monophosphat 23.4 30 0.001 24.9 1.3 32 22-60 83-114 (486)
59 2zet_C Melanophilin; complex, 23.0 47 0.0016 20.8 2.0 17 17-33 14-30 (153)
60 2ou3_A Tellurite resistance pr 22.5 36 0.0012 20.8 1.4 26 6-33 34-59 (161)
61 2lv7_A Calcium-binding protein 21.8 34 0.0012 19.1 1.1 40 4-43 37-78 (100)
62 1jcn_A Inosine monophosphate d 20.1 29 0.00098 25.0 0.6 26 35-60 171-196 (514)
No 1
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=98.85 E-value=6.3e-10 Score=69.05 Aligned_cols=57 Identities=9% Similarity=0.096 Sum_probs=50.9
Q ss_pred hhhhcccceecccCCCccCCHhHHHHHHhhhccCcceeccceeecccEEEeeCCCCCCH
Q psy17078 2 KKKFKTGIPMEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 2 k~elk~Lv~lh~~~~~g~l~~~E~~mi~g~lel~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
..||+.|+.... ++|.++++|++++.++++|++.+|+++|+|+.++++++.++++..
T Consensus 5 ~~el~~li~~~~--~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~i~~ 61 (156)
T 3oi8_A 5 AEDVLNLLRQAH--EQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIER 61 (156)
T ss_dssp HHHHHHHHHHHH--HTTSSCHHHHHHHHHHHHHTTCBGGGTCEEGGGCCCEETTCCHHH
T ss_pred HHHHHHHHHhHH--hcCCcCHHHHHHHHHHhccCCCCHhheeeeHHHeEEECCCCCHHH
Confidence 468899988543 468899999999999999999999999999999999999998764
No 2
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=98.71 E-value=2e-09 Score=67.88 Aligned_cols=58 Identities=12% Similarity=0.292 Sum_probs=21.7
Q ss_pred hhhhcccceecccCCCccCCHhHHHHHHhhhccCcceeccceeecccEEEeeCCCCCCHH
Q psy17078 2 KKKFKTGIPMEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFT 61 (68)
Q Consensus 2 k~elk~Lv~lh~~~~~g~l~~~E~~mi~g~lel~~~~V~diMtPr~~V~~L~~d~~l~~~ 61 (68)
..||++|+... ...|.++++|++++.++++|++.+|+++|+|+.++++++.++++...
T Consensus 9 ~~el~~l~~~~--~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~v~~a 66 (172)
T 3lhh_A 9 QEDIQAMLQEG--SSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLDAN 66 (172)
T ss_dssp ------------------------------------CTTTTSEEGGGCCCEETTSCHHHH
T ss_pred HHHHHHHHHHH--HHcCCCCHHHHHHHHHHhccCCCCHHHhCccHHHeEEEcCCCCHHHH
Confidence 46889999754 45788999999999999999999999999999999999999987643
No 3
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=98.53 E-value=3.4e-08 Score=62.91 Aligned_cols=47 Identities=23% Similarity=0.372 Sum_probs=40.2
Q ss_pred cCCCccCCHhHHHHHHhhhccCcceeccceeecccEEEeeCCCCCCH
Q psy17078 14 TSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 14 ~~~~g~l~~~E~~mi~g~lel~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
+..+|.|+++|++++.++++|.+.+|++||+|+.++++++.++++.+
T Consensus 13 ~~~~g~l~~~e~~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~e 59 (173)
T 3ocm_A 13 MPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAAT 59 (173)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHHH
T ss_pred HHhcCCcCHHHHHHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHHH
Confidence 34578899999999999999999999999999999999999998764
No 4
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=98.45 E-value=3.7e-08 Score=60.00 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=27.8
Q ss_pred CCccCCHhHHHHHHhhhccCcceeccceeecccEEEeeCCCCCCHH
Q psy17078 16 NLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFT 61 (68)
Q Consensus 16 ~~g~l~~~E~~mi~g~lel~~~~V~diMtPr~~V~~L~~d~~l~~~ 61 (68)
++|.++++|++++.++++|.+.+|+++|+|+.++++++.++++.+.
T Consensus 2 ~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~~~~a 47 (148)
T 3lv9_A 2 NAGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEEKI 47 (148)
T ss_dssp ----------------CGGGTCBGGGTSEETTTCCCEETTCCHHHH
T ss_pred CCCccCHHHHHHHHHHhccCCCCHHHccccHHHeEEECCCCCHHHH
Confidence 4688999999999999999999999999999999999999987653
No 5
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=97.94 E-value=6e-07 Score=55.04 Aligned_cols=43 Identities=16% Similarity=0.355 Sum_probs=34.7
Q ss_pred cCCHhHHHHHHhhhccCcceeccceeecccEEEeeCCCCCCHH
Q psy17078 19 ALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFT 61 (68)
Q Consensus 19 ~l~~~E~~mi~g~lel~~~~V~diMtPr~~V~~L~~d~~l~~~ 61 (68)
.++++|++++.++++|++.+|+++|+|+.+++.++.++++.+.
T Consensus 2 ~l~~~e~~~i~~~~~l~~~~v~~iM~~~~~~~~v~~~~~~~~a 44 (153)
T 3oco_A 2 NADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIADA 44 (153)
T ss_dssp ------CCHHHHHHHHHHCBHHHHSEEGGGCCCEETTSBHHHH
T ss_pred CcCHHHHHHHHHhcccCCCEeeeEecchhheEEEcCCCCHHHH
Confidence 3678899999999999999999999999999999999987653
No 6
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=97.74 E-value=3e-06 Score=56.91 Aligned_cols=46 Identities=7% Similarity=0.086 Sum_probs=42.2
Q ss_pred CCccCCHhHHHHHHhhhcc-CcceeccceeecccEEEeeCCCCCCHH
Q psy17078 16 NLVALKKDEVNIISGALEM-TQKKVEEIMTKLDDCYMLDIETILNFT 61 (68)
Q Consensus 16 ~~g~l~~~E~~mi~g~lel-~~~~V~diMtPr~~V~~L~~d~~l~~~ 61 (68)
+.+.++++|+.+++++++| ++.+|.|+|+|+.++++++.+.++.+.
T Consensus 8 ~~~~~~~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~~a 54 (323)
T 3t4n_C 8 SQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKS 54 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHHHH
Confidence 4677899999999999999 999999999999999999999987654
No 7
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=97.47 E-value=3.1e-05 Score=52.19 Aligned_cols=44 Identities=2% Similarity=0.148 Sum_probs=38.3
Q ss_pred ccCCHhHHHHHHhhhccCc-ceeccceeecccEEEeeCCCCCCHH
Q psy17078 18 VALKKDEVNIISGALEMTQ-KKVEEIMTKLDDCYMLDIETILNFT 61 (68)
Q Consensus 18 g~l~~~E~~mi~g~lel~~-~~V~diMtPr~~V~~L~~d~~l~~~ 61 (68)
++++++|..++.++++|-+ .+|+|+|+|+.++++++.+.++...
T Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~~a 46 (334)
T 2qrd_G 2 MDVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTS 46 (334)
T ss_dssp CSHHHHHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHH
T ss_pred CCCchHHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHHHH
Confidence 4577889999999999555 9999999999999999999987543
No 8
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=96.98 E-value=0.00044 Score=44.90 Aligned_cols=40 Identities=3% Similarity=0.020 Sum_probs=36.2
Q ss_pred cCCHhHHHHHHhhhccCcceeccceeecccEEEeeCCCCCCH
Q psy17078 19 ALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 19 ~l~~~E~~mi~g~lel~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
.++++|++++.++|.+.+.+|+++|+| ++++++.+.++.+
T Consensus 36 ~l~~~e~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~e 75 (205)
T 3kxr_A 36 QMGERQRQRFELYDQYSENEIGRYTDH--QMLVLSDKATVAQ 75 (205)
T ss_dssp HSCHHHHHHHHHHHHSCTTCGGGGCBC--CCCEEETTCBHHH
T ss_pred cCCHHHHHHHHHHhCCCcchHHhhccC--ceEEECCCCcHHH
Confidence 468999999999999999999999998 7889999988754
No 9
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=96.61 E-value=0.00045 Score=42.90 Aligned_cols=36 Identities=11% Similarity=0.082 Sum_probs=29.3
Q ss_pred HHHHhhh-ccCcceeccceeecccEEEeeCCCCCCHH
Q psy17078 26 NIISGAL-EMTQKKVEEIMTKLDDCYMLDIETILNFT 61 (68)
Q Consensus 26 ~mi~g~l-el~~~~V~diMtPr~~V~~L~~d~~l~~~ 61 (68)
.||...+ +|-.++++++|||+++|.+++.++++++.
T Consensus 3 ami~~~~e~~l~~~~~~iM~P~~~v~~v~~~~t~~~a 39 (156)
T 3k6e_A 3 AMIAKEFETFLLGQEETFLTPAKNLAVLIDTHNADHA 39 (156)
T ss_dssp HHHHHHHHHHHHTTGGGGEEETTSSCCEETTSBHHHH
T ss_pred chHHHHHHHHhhccHHHhCcchhHeEEECCcCCHHHH
Confidence 3555555 36678999999999999999999998654
No 10
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=96.45 E-value=0.00029 Score=47.38 Aligned_cols=45 Identities=4% Similarity=0.100 Sum_probs=32.3
Q ss_pred CCCccCCHhHHHHHHhhhccCcceeccceeecccEEEeeCCCCCCHH
Q psy17078 15 SNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFT 61 (68)
Q Consensus 15 ~~~g~l~~~E~~mi~g~lel~~~~V~diMtPr~~V~~L~~d~~l~~~ 61 (68)
...|.+.+.+.+.+.+. |++.+|+|+|+|+.++++++.++++.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~--l~~~~v~dim~p~~~v~~v~~~~~v~~a 59 (330)
T 2v8q_E 15 EHSQETPESNSSVYTTF--MKSHRCYDLIPTSSKLVVFDTSLQVKKA 59 (330)
T ss_dssp --------CCSCHHHHH--HHHSBGGGGSCSEEEEEEEETTSBHHHH
T ss_pred hHhhhccchhhHHHHHH--HHcCcHhhhccCCCcEEEEeCCCcHHHH
Confidence 34566777777788887 4789999999999999999999987654
No 11
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=95.74 E-value=0.0022 Score=37.74 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=21.2
Q ss_pred ccCcceeccceeecccEEEeeCCCCCCH
Q psy17078 33 EMTQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 33 el~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
+|++.+|+++|+|+.++++++.++++.+
T Consensus 2 ~l~~~~v~~iM~~~~~v~~v~~~~~~~~ 29 (130)
T 3i8n_A 2 NAQDVPVTQVMTPRPVVFRVDATMTINE 29 (130)
T ss_dssp -----CCTTTSCCBCCCCEEETTSBHHH
T ss_pred CcCcCCHhhCCCcHHHEEEEcCCCCHHH
Confidence 4789999999999999999999988764
No 12
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=95.03 E-value=0.0045 Score=36.37 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.1
Q ss_pred cCcceeccceeecccEEEeeCCCCCCH
Q psy17078 34 MTQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 34 l~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
.++.+|+|+|+|+.++++++.++++.+
T Consensus 2 ~~~~~v~diM~~~~~~~~v~~~~~~~~ 28 (129)
T 3jtf_A 2 NAERTVADIMVPRSRMDLLDISQPLPQ 28 (129)
T ss_dssp --CCBHHHHCEEGGGCCCEETTSCHHH
T ss_pred CCCCCHHHhCccHHHeEEECCCCCHHH
Confidence 468899999999999999999998865
No 13
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=95.00 E-value=0.011 Score=39.52 Aligned_cols=41 Identities=7% Similarity=0.025 Sum_probs=36.2
Q ss_pred ccCCHhHHHHHHhhhccCcceeccceeecccEEEeeCCCCCCH
Q psy17078 18 VALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 18 g~l~~~E~~mi~g~lel~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
+.++..++..+.++|++.+.+|+++|+| ++++++.+.++..
T Consensus 116 ~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~e 156 (278)
T 2yvy_A 116 DLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVEE 156 (278)
T ss_dssp HHSCHHHHHHHHHHHHSCTTBGGGTCBS--CCCEECTTSBHHH
T ss_pred HcCCHHHHHHHHHHHCCCcchHHhhcCC--CceEECCCCcHHH
Confidence 4678899999999999999999999998 7888988887644
No 14
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=94.91 E-value=0.0049 Score=36.62 Aligned_cols=26 Identities=12% Similarity=0.095 Sum_probs=22.1
Q ss_pred CcceeccceeecccEEEeeCCCCCCH
Q psy17078 35 TQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 35 ~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
++.+|+++|+|+.++++++.++++.+
T Consensus 1 ~~~~v~~iM~~~~~~~~v~~~~~v~~ 26 (136)
T 3lfr_A 1 ADLQVRDIMVPRSQMISIKATQTPRE 26 (136)
T ss_dssp --CBHHHHSEEGGGCCCEETTCCHHH
T ss_pred CCCChHhccccHHHEEEEcCCCCHHH
Confidence 36799999999999999999998864
No 15
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=94.90 E-value=0.021 Score=41.57 Aligned_cols=41 Identities=7% Similarity=0.025 Sum_probs=37.3
Q ss_pred ccCCHhHHHHHHhhhccCcceeccceeecccEEEeeCCCCCCH
Q psy17078 18 VALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 18 g~l~~~E~~mi~g~lel~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
+.++.+++..+.+++++.+.+|+++|+| ++++++.+.+..+
T Consensus 136 ~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~v~v~~~~tv~e 176 (473)
T 2zy9_A 136 DLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVEE 176 (473)
T ss_dssp TSSCHHHHHHHHHHHTSCTTBSTTTCBS--CEEEECTTCBHHH
T ss_pred hcCCHHHHHHHHHHhcCCCCCHHHhCCC--CceEeCCCCcHHH
Confidence 5788999999999999999999999998 7999999988754
No 16
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=94.80 E-value=0.0067 Score=35.84 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=22.2
Q ss_pred cceeccceeecccEEEeeCCCCCCH
Q psy17078 36 QKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 36 ~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
+.+|+|+|+|+.++++++.++++.+
T Consensus 1 ~~~v~~iM~~~~~~~~v~~~~~v~~ 25 (130)
T 3hf7_A 1 KVSVNDIMVPRNEIVGIDINDDWKS 25 (130)
T ss_dssp CCBHHHHSEEGGGCCEEETTSCHHH
T ss_pred CcCHHHhCccHHHEEEEcCCCCHHH
Confidence 3689999999999999999998864
No 17
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=94.22 E-value=0.012 Score=35.37 Aligned_cols=35 Identities=11% Similarity=-0.018 Sum_probs=29.4
Q ss_pred HHHhhhccCcceeccceeecccEEEeeCCCCCCHH
Q psy17078 27 IISGALEMTQKKVEEIMTKLDDCYMLDIETILNFT 61 (68)
Q Consensus 27 mi~g~lel~~~~V~diMtPr~~V~~L~~d~~l~~~ 61 (68)
+-....+|...+|+|+|+|+.+++.++.++++.+.
T Consensus 5 ~~~~~~~l~~~~v~dim~p~~~~~~v~~~~~l~~a 39 (156)
T 3ctu_A 5 IAKEFETFLLGQEETFLTPAKNLAVLIDTHNADHA 39 (156)
T ss_dssp HHHHHHHHHHTTGGGGEEEGGGCCCEETTSBHHHH
T ss_pred ccHHHHHHHHHHHHHHcCcccCceEECCCCCHHHH
Confidence 34556688889999999999999999999987653
No 18
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=93.89 E-value=0.011 Score=34.44 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=22.5
Q ss_pred CcceeccceeecccEEEeeCCCCCCHH
Q psy17078 35 TQKKVEEIMTKLDDCYMLDIETILNFT 61 (68)
Q Consensus 35 ~~~~V~diMtPr~~V~~L~~d~~l~~~ 61 (68)
++.+|+|+|+|+.+++.++.++++.+.
T Consensus 1 ~~~~v~diM~~~~~~~~v~~~~~~~~a 27 (127)
T 3nqr_A 1 ADQRVRDIMIPRSQMITLKRNQTLDEC 27 (127)
T ss_dssp --CBHHHHSEEGGGCCCEETTCCHHHH
T ss_pred CCcCHHHhcccHHHeEEEcCCCCHHHH
Confidence 467999999999999999999988653
No 19
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=92.77 E-value=0.046 Score=36.84 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=35.6
Q ss_pred ccCCHhHHHHHHhhhccCcceeccceeecccEEEeeCCCCCCH
Q psy17078 18 VALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 18 g~l~~~E~~mi~g~lel~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
+.++.+++..+.+++.+.+.+|+++|+| ++++++.+.++..
T Consensus 118 ~~l~~~e~~~i~~ll~~~~~~v~~iM~~--~~~~v~~~~tv~e 158 (286)
T 2oux_A 118 SLLSSEEAGEIKELLHYEDETAGAIMTT--EFVSIVANQTVRS 158 (286)
T ss_dssp HTSCHHHHHHHHHHTTSCTTBHHHHCBS--CCCEECSSSBHHH
T ss_pred HcCCHHHHHHHHHHhcCChHHHHHhCCC--CceEECCCCcHHH
Confidence 3578889999999999999999999997 7888888887654
No 20
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=92.10 E-value=0.034 Score=33.13 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=22.6
Q ss_pred HHhhhccCcceeccceeecccEEEeeCCCCCCH
Q psy17078 28 ISGALEMTQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 28 i~g~lel~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
..+...|.+.+|+++|+|+.+++.++.+.++..
T Consensus 2 ~~~~~~l~~~~v~~im~~~~~~~~v~~~~~~~~ 34 (157)
T 2emq_A 2 TWEHNEFMQMTVKPFLIPADKVAHVQPGNYLDH 34 (157)
T ss_dssp --------CCBSTTTCEEGGGSCCBCTTSBHHH
T ss_pred chhHhhHhhCcHHhhccCCccceEECCCCcHHH
Confidence 355667889999999999999999999988754
No 21
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=88.28 E-value=0.063 Score=31.95 Aligned_cols=39 Identities=13% Similarity=0.196 Sum_probs=23.5
Q ss_pred HhHHHHHHhhhccCc---ceeccceeecccEEEeeCCCCCCH
Q psy17078 22 KDEVNIISGALEMTQ---KKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 22 ~~E~~mi~g~lel~~---~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
+++....++.-.++. .+|+++|+|+.++..++.++++.+
T Consensus 10 ~~~~~~~~~~~~l~~~l~~~v~dim~~~~~~~~v~~~~~~~~ 51 (149)
T 3k2v_A 10 AEDFALSHPGGALGRKLLLRVNDIMHTGDEIPHVGLQATLRD 51 (149)
T ss_dssp ----------CHHHHHTTSBGGGTSBCGGGSCEECTTCBHHH
T ss_pred HHHhhhcCCCchhchhcccCHHHHhcCCCCCeEECCCCcHHH
Confidence 344444444444444 499999999999999999988755
No 22
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=88.06 E-value=0.11 Score=31.10 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=24.8
Q ss_pred hccCcceeccceeecccEEEeeCCCCCCHH
Q psy17078 32 LEMTQKKVEEIMTKLDDCYMLDIETILNFT 61 (68)
Q Consensus 32 lel~~~~V~diMtPr~~V~~L~~d~~l~~~ 61 (68)
..|...+|+++|+|+.+++.++.++++.+.
T Consensus 9 ~~l~~~~v~~im~~~~~~~~v~~~~~l~~a 38 (159)
T 1yav_A 9 DQLLEATVGQFMIEADKVAHVQVGNNLEHA 38 (159)
T ss_dssp --CTTCBHHHHSEEGGGSCCEETTCBHHHH
T ss_pred HHHhHhhHHHHhCCccceEEECCCCcHHHH
Confidence 367889999999999999999999887543
No 23
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=86.65 E-value=0.064 Score=31.73 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=25.7
Q ss_pred hhccCcceeccceeecccEEEeeCCCCCCH
Q psy17078 31 ALEMTQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 31 ~lel~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
.-.|.+.+|+++|+|..++..++.++++.+
T Consensus 9 ~~~l~~~~v~~im~~~~~~~~v~~~~~l~~ 38 (150)
T 3lqn_A 9 KDEFQQIFVKDLMISSEKVAHVQIGNGLEH 38 (150)
T ss_dssp HHHHHHCBHHHHSEEGGGSCCBCTTSBHHH
T ss_pred HHhhhcCChhhcccCCCceEEECCCCcHHH
Confidence 445788999999999999999999988754
No 24
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=85.96 E-value=0.21 Score=29.02 Aligned_cols=26 Identities=27% Similarity=0.225 Sum_probs=22.7
Q ss_pred CcceeccceeecccEEEeeCCCCCCH
Q psy17078 35 TQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 35 ~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
+..+|+++|+|+.+++.++.++++..
T Consensus 3 ~~~~v~~im~~~~~~~~v~~~~~~~~ 28 (152)
T 4gqw_A 3 GVYTVGEFMTKKEDLHVVKPTTTVDE 28 (152)
T ss_dssp CCSBGGGTSEESTTCCCBCTTSBHHH
T ss_pred ceEEhhhccCCCCCCeEECCCCcHHH
Confidence 46789999999999999999988754
No 25
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=84.78 E-value=0.13 Score=38.55 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=23.4
Q ss_pred CcceeccceeecccEEEeeCCCCCCH
Q psy17078 35 TQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 35 ~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
.+.+|+|+|+||.++..++.++++.+
T Consensus 451 ~~~~V~diM~p~~~v~~v~~~~t~~e 476 (632)
T 3org_A 451 PEMTAREIMHPIEGEPHLFPDSEPQH 476 (632)
T ss_dssp TTSBHHHHCBCTTTSCCBCSSSCHHH
T ss_pred ccCcHHHHhhcCCCceEecCCCcHHH
Confidence 67899999999999999999988754
No 26
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=84.39 E-value=0.41 Score=29.03 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=26.0
Q ss_pred hHHHHHHhhhccCcceeccceeecccEEEeeCCCCCCHH
Q psy17078 23 DEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFT 61 (68)
Q Consensus 23 ~E~~mi~g~lel~~~~V~diMtPr~~V~~L~~d~~l~~~ 61 (68)
.++..+..+ +++.+|+|||++ ++++++.++++.+.
T Consensus 6 ~~~~~~~~~--l~~~~V~diM~~--~v~~v~~~~tl~~a 40 (170)
T 4esy_A 6 ARRRAIARA--IRQVPIRDILTS--PVVTVREDDTLDAV 40 (170)
T ss_dssp HHHHHHHHH--HHTSBGGGGCCS--CCCCEETTSBHHHH
T ss_pred HHHHHHHHH--HcCCCHHHhcCC--CCcEECCcCcHHHH
Confidence 345555554 468999999986 78999999887653
No 27
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=78.81 E-value=0.21 Score=28.90 Aligned_cols=24 Identities=4% Similarity=0.083 Sum_probs=20.7
Q ss_pred eeccceeec-ccEEEeeCCCCCCHH
Q psy17078 38 KVEEIMTKL-DDCYMLDIETILNFT 61 (68)
Q Consensus 38 ~V~diMtPr-~~V~~L~~d~~l~~~ 61 (68)
+|+++|+|+ .++..++.++++.+.
T Consensus 7 ~v~~im~~~~~~~~~v~~~~~~~~a 31 (135)
T 2rc3_A 7 TVKHLLQEKGHTVVAIGPDDSVFNA 31 (135)
T ss_dssp BHHHHHHHHCCCCCEECTTSBHHHH
T ss_pred eHHHHHhcCCCCcEEECCCCcHHHH
Confidence 899999998 899999999887653
No 28
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=78.40 E-value=0.41 Score=28.69 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=21.8
Q ss_pred cceeccceeecccEEEeeCCCCCCH
Q psy17078 36 QKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 36 ~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
-.+|+++|+|+.+++.++.++++.+
T Consensus 3 ~~~v~dim~~~~~~~~v~~~~~l~~ 27 (180)
T 3sl7_A 3 GYTVGDFMTPRQNLHVVKPSTSVDD 27 (180)
T ss_dssp CCBHHHHSEEGGGCCCBCTTSBHHH
T ss_pred ceeHHHhcCCCCCceeeCCCCcHHH
Confidence 4689999999999999999988754
No 29
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=76.98 E-value=0.49 Score=27.92 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=21.3
Q ss_pred HHHhhhccCcceeccceeecccEEEeeCCCCCCH
Q psy17078 27 IISGALEMTQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 27 mi~g~lel~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
+..+.+.+...+|+++|+| +++.++.++++.+
T Consensus 3 l~~~~~~~~~~~v~dim~~--~~~~v~~~~~~~~ 34 (164)
T 2pfi_A 3 ILGRNIGSHHVRVEHFMNH--SITTLAKDTPLEE 34 (164)
T ss_dssp -------CCSCBHHHHCBC--CCCCEETTCBHHH
T ss_pred CccccccccCCCHHHHcCC--CCeEECCCCcHHH
Confidence 3456678889999999998 6888888887654
No 30
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=76.16 E-value=0.95 Score=25.83 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=20.5
Q ss_pred cCcceeccceeecccEEEeeCCCCCCH
Q psy17078 34 MTQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 34 l~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
|++.+|+++|+| +++.++.++++.+
T Consensus 1 l~~~~v~~im~~--~~~~v~~~~~~~~ 25 (133)
T 2ef7_A 1 MEEEIVKEYMKT--QVISVTKDAKLND 25 (133)
T ss_dssp CCCCBGGGTSBC--SCCEEETTCBHHH
T ss_pred CCcccHHHhccC--CCEEECCCCcHHH
Confidence 568899999998 5888888888754
No 31
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=73.54 E-value=0.43 Score=28.72 Aligned_cols=31 Identities=6% Similarity=0.059 Sum_probs=25.7
Q ss_pred hhhccCcceeccceeec-ccEEEeeCCCCCCH
Q psy17078 30 GALEMTQKKVEEIMTKL-DDCYMLDIETILNF 60 (68)
Q Consensus 30 g~lel~~~~V~diMtPr-~~V~~L~~d~~l~~ 60 (68)
..-.|...+|+|+|+|. .++..++.++++.+
T Consensus 17 ~~~~l~~~~v~dim~~~~~~~~~v~~~~~l~~ 48 (165)
T 3fhm_A 17 LYFQGMATFVKDLLDRKGRDVVTVGPDVSIGE 48 (165)
T ss_dssp CCCSSSSCBHHHHHHHHCSCCCEECTTSBHHH
T ss_pred hhHhhhhcCHHHHhccCCCCCeEECCCCCHHH
Confidence 34567889999999997 78899999988754
No 32
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=72.79 E-value=1.2 Score=25.57 Aligned_cols=27 Identities=15% Similarity=0.041 Sum_probs=21.7
Q ss_pred hccCcceeccceeecccEEEeeCCCCCCH
Q psy17078 32 LEMTQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 32 lel~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
+.|...+|+++|++ +++.++.++++.+
T Consensus 2 ~~l~~~~v~~im~~--~~~~v~~~~~~~~ 28 (138)
T 2yzi_A 2 VMDMKAPIKVYMTK--KLLGVKPSTSVQE 28 (138)
T ss_dssp -CCTTSBGGGTCBC--CCCEECTTSBHHH
T ss_pred cchhhhhHHHHhcC--CCeEECCCCcHHH
Confidence 46889999999985 7888888887754
No 33
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=71.57 E-value=0.53 Score=27.86 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=21.6
Q ss_pred ceeccceeec----ccEEEeeCCCCCCHH
Q psy17078 37 KKVEEIMTKL----DDCYMLDIETILNFT 61 (68)
Q Consensus 37 ~~V~diMtPr----~~V~~L~~d~~l~~~ 61 (68)
++|+|+|+|+ .+++.++.++++.+.
T Consensus 7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a 35 (157)
T 4fry_A 7 TTVAQILKAKPDSGRTIYTVTKNDFVYDA 35 (157)
T ss_dssp CBHHHHHHHSTTTTCCCCEEETTSBHHHH
T ss_pred HHHHHHHhcccccCCCCeEECCCCcHHHH
Confidence 6899999999 889999999887653
No 34
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=70.64 E-value=2.3 Score=25.24 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=30.1
Q ss_pred CccCCHhHHHHHHhh---hccCcceeccceeecccEEEeeCCCCCCH
Q psy17078 17 LVALKKDEVNIISGA---LEMTQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 17 ~g~l~~~E~~mi~g~---lel~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
-|.++..+ ++... -...+.+|.++|+|+.+++.++.++++..
T Consensus 60 ~Givt~~d--l~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~ 104 (159)
T 3fv6_A 60 VGVLSRKD--LLRASIGQQELTSVPVHIIMTRMPNITVCRREDYVMD 104 (159)
T ss_dssp EEEEEHHH--HHHHHTSCSCTTTCBGGGTSEETTSCCCBCTTSBHHH
T ss_pred EEEEeHHH--HHHHhhccCcccCcCHHHHHcCCCCcEEECCCCCHHH
Confidence 45565543 33333 34578899999999999999999988754
No 35
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=67.75 E-value=1.1 Score=24.23 Aligned_cols=29 Identities=31% Similarity=0.406 Sum_probs=19.4
Q ss_pred CccCCHhH--HHHHHhhhccCcceeccceee
Q psy17078 17 LVALKKDE--VNIISGALEMTQKKVEEIMTK 45 (68)
Q Consensus 17 ~g~l~~~E--~~mi~g~lel~~~~V~diMtP 45 (68)
-|.+++.. +.++..-.++.+.+|+++||+
T Consensus 35 vGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~ 65 (70)
T 3ghd_A 35 LGVVTERDILDKVVAKGKNPKEVKVEEIMTK 65 (70)
T ss_dssp EEEEEHHHHHHHTTTTTCCGGGCBGGGTCEE
T ss_pred EEEEEHHHHHHHHHhcCCCcccCCHHHhcCC
Confidence 46666544 233444456788899999997
No 36
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=67.46 E-value=0.58 Score=28.21 Aligned_cols=27 Identities=4% Similarity=0.001 Sum_probs=20.8
Q ss_pred cCcceeccceeeccc--EEEe--eCCCCCCH
Q psy17078 34 MTQKKVEEIMTKLDD--CYML--DIETILNF 60 (68)
Q Consensus 34 l~~~~V~diMtPr~~--V~~L--~~d~~l~~ 60 (68)
+...+|+|+|+|..+ ++.+ +.++++.+
T Consensus 8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~ 38 (185)
T 2j9l_A 8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVED 38 (185)
T ss_dssp -CCCBHHHHSBSCTTSCCCCCEESSCEEHHH
T ss_pred hccCcHHHHhcccccCceEEEecCCCccHHH
Confidence 368899999999876 7777 88777644
No 37
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=66.26 E-value=1.1 Score=28.74 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=21.3
Q ss_pred CcceeccceeecccEEEeeCCCCCCH
Q psy17078 35 TQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 35 ~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
...+|+++|+| .+++.++.++++.+
T Consensus 183 ~~~~v~~im~~-~~~~~~~~~~~~~~ 207 (245)
T 3l2b_A 183 QSLPVDYVMTK-DNLVAVSTDDLVED 207 (245)
T ss_dssp GGSBHHHHSBC-TTCCCEETTSBHHH
T ss_pred cCCceeeEecC-CccEEECCCCcHHH
Confidence 46789999999 89999999988754
No 38
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=60.77 E-value=2.5 Score=24.03 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=20.1
Q ss_pred cCcceeccceeecccEEEeeCCCCCCH
Q psy17078 34 MTQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 34 l~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
|.+.+|+++|+| ++..++.++++.+
T Consensus 5 l~~~~v~~im~~--~~~~v~~~~~~~~ 29 (138)
T 2p9m_A 5 LKNIKVKDVMTK--NVITAKRHEGVVE 29 (138)
T ss_dssp CTTCBGGGTSBC--SCCCEETTSBHHH
T ss_pred cccCCHHHhhcC--CceEECCCCcHHH
Confidence 578899999986 6788888887654
No 39
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=59.28 E-value=2.7 Score=27.19 Aligned_cols=30 Identities=7% Similarity=-0.054 Sum_probs=23.2
Q ss_pred HhhhccCcceeccceeecccEEEeeCCCCCCH
Q psy17078 29 SGALEMTQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 29 ~g~lel~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
.+.+++.+.+|+++|+| ++..++.++++.+
T Consensus 85 ~~~~~~~~~~v~~im~~--~~~~v~~~~~~~~ 114 (296)
T 3ddj_A 85 GDLYHISTTPIIDYMTP--NPVTVYNTSDEFT 114 (296)
T ss_dssp HHHHHHHTSBGGGTSEE--SCCCEETTSCHHH
T ss_pred hhhHHHhcccHHHhccC--CCEEEcCCCCHHH
Confidence 44566778999999998 6778888877543
No 40
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=58.07 E-value=2.8 Score=23.31 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=28.5
Q ss_pred CccCCHhHH-HHHHhhhccCcceeccceeecccEEEeeCCCCCCH
Q psy17078 17 LVALKKDEV-NIISGALEMTQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 17 ~g~l~~~E~-~mi~g~lel~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
-|.++..+. ..+.+-.++.+.+|.++|+| .+..++.++++.+
T Consensus 44 ~G~it~~dl~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~ 86 (125)
T 1pbj_A 44 VGIVTTWDVLEAIAEGDDLAEVKVWEVMER--DLVTISPRATIKE 86 (125)
T ss_dssp EEEEEHHHHHHHHHHTCCTTTSBHHHHCBC--GGGEECTTSCHHH
T ss_pred EEEEeHHHHHHHHhcCCcccccCHHHHcCC--CCeEECCCCCHHH
Confidence 466666552 33333345678999999997 6778888877654
No 41
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=55.12 E-value=2.2 Score=25.24 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=21.1
Q ss_pred cCcceeccceeecccEEEeeCCCCCCHH
Q psy17078 34 MTQKKVEEIMTKLDDCYMLDIETILNFT 61 (68)
Q Consensus 34 l~~~~V~diMtPr~~V~~L~~d~~l~~~ 61 (68)
+...+|+++|++ +++.++.++++.+.
T Consensus 13 ~~~~~v~~im~~--~~~~v~~~~tl~ea 38 (157)
T 1o50_A 13 MKVKDVCKLISL--KPTVVEEDTPIEEI 38 (157)
T ss_dssp CBHHHHTTSSCC--CCEEECTTCBHHHH
T ss_pred hccccHhhcccC--CCceECCCCCHHHH
Confidence 567889999987 78889998887653
No 42
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=52.30 E-value=3.3 Score=26.24 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=21.6
Q ss_pred hccCcceeccceeecccEEEeeCCCCCCHH
Q psy17078 32 LEMTQKKVEEIMTKLDDCYMLDIETILNFT 61 (68)
Q Consensus 32 lel~~~~V~diMtPr~~V~~L~~d~~l~~~ 61 (68)
++..+.+|+++|+| ++..++.++++.+.
T Consensus 79 ~~~~~~~v~~im~~--~~~~v~~~~~~~~a 106 (280)
T 3kh5_A 79 LAAINEPVREIMEE--NVITLKENADIDEA 106 (280)
T ss_dssp HHHTTSBGGGTSBC--SCCCEETTCBHHHH
T ss_pred hHHhhhhHHHhcCC--CCEEECCCCCHHHH
Confidence 34457899999998 78889988876543
No 43
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=46.82 E-value=3.6 Score=23.25 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=18.5
Q ss_pred ccCcceeccceeecccEEEeeCCCCCCHH
Q psy17078 33 EMTQKKVEEIMTKLDDCYMLDIETILNFT 61 (68)
Q Consensus 33 el~~~~V~diMtPr~~V~~L~~d~~l~~~ 61 (68)
.++-.+|+++|++ +++.++.++++.+.
T Consensus 4 ~~~~~~v~~im~~--~~~~v~~~~~~~~a 30 (133)
T 1y5h_A 4 PFTMTTARDIMNA--GVTCVGEHETLTAA 30 (133)
T ss_dssp ----CCHHHHSEE--TCCCEETTSBHHHH
T ss_pred hhhhcCHHHHhcC--CceEeCCCCCHHHH
Confidence 3456799999996 78888888877543
No 44
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=46.74 E-value=6.9 Score=22.39 Aligned_cols=22 Identities=9% Similarity=0.096 Sum_probs=18.3
Q ss_pred ceeccceeecccEEEeeCCCCCCH
Q psy17078 37 KKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 37 ~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
.+|+++|+| ++..++.++++.+
T Consensus 5 ~~v~~im~~--~~~~v~~~~~~~~ 26 (141)
T 2rih_A 5 IRTSELLKR--PPVSLPETATIRE 26 (141)
T ss_dssp CBGGGGCCS--CCEEEETTCBHHH
T ss_pred eEHHHHhcC--CCeEeCCCCcHHH
Confidence 689999996 7888998888765
No 45
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=45.87 E-value=5.7 Score=23.53 Aligned_cols=24 Identities=33% Similarity=0.209 Sum_probs=18.9
Q ss_pred CcceeccceeecccEEEeeCCCCCCH
Q psy17078 35 TQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 35 ~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
...+|+++|+| +++.++.++++..
T Consensus 3 ~~~~v~dim~~--~~~~v~~~~tl~~ 26 (160)
T 2o16_A 3 LMIKVEDMMTR--HPHTLLRTHTLND 26 (160)
T ss_dssp CCCBGGGTSEE--SCCCBCTTSBHHH
T ss_pred CcCcHHHHhcC--CCeEECCCCcHHH
Confidence 45789999997 6788888887644
No 46
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=43.03 E-value=16 Score=18.19 Aligned_cols=28 Identities=36% Similarity=0.440 Sum_probs=17.1
Q ss_pred CccCCHhHHHHHHhhhc----cCcceeccceeec
Q psy17078 17 LVALKKDEVNIISGALE----MTQKKVEEIMTKL 46 (68)
Q Consensus 17 ~g~l~~~E~~mi~g~le----l~~~~V~diMtPr 46 (68)
-|.++..+ ++..... ..+.+|+++|+|-
T Consensus 35 ~Givt~~d--l~~~~~~~~~~~~~~~v~~im~~~ 66 (70)
T 3fio_A 35 LGVVTERD--ILDKVVAKGKNPKEVKVEEIMTKN 66 (70)
T ss_dssp EEEEEHHH--HHHHTTTTTCCGGGCBGGGTCEEC
T ss_pred EEEEEHHH--HHHHHHHcCCCcccCCHHHhcCCC
Confidence 35555543 4443322 4578899999974
No 47
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=39.56 E-value=4.5 Score=22.41 Aligned_cols=22 Identities=14% Similarity=0.067 Sum_probs=17.0
Q ss_pred ceeccceeecccEEEeeCCCCCCH
Q psy17078 37 KKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 37 ~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
.+|+++|+| +++.++.++++.+
T Consensus 1 ~~v~~im~~--~~~~v~~~~~~~~ 22 (122)
T 3kpb_A 1 TLVKDILSK--PPITAHSNISIME 22 (122)
T ss_dssp CBHHHHCCS--CCCCEETTSBHHH
T ss_pred CchHHhhCC--CCEEeCCCCcHHH
Confidence 468999997 5788888887654
No 48
>3nwz_A BH2602 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG, unknown FUN; HET: COA; 2.57A {Bacillus halodurans}
Probab=39.11 E-value=20 Score=22.05 Aligned_cols=29 Identities=17% Similarity=0.406 Sum_probs=15.7
Q ss_pred Chhhhc-----ccceecccCCCccCCHhHHHHHHhhhc
Q psy17078 1 MKKKFK-----TGIPMEATSNLVALKKDEVNIISGALE 33 (68)
Q Consensus 1 ~k~elk-----~Lv~lh~~~~~g~l~~~E~~mi~g~le 33 (68)
||+||. .+++ +--+..+++|.+.++.+++
T Consensus 1 ~~~~~~~~~~~~~~~----~~~~~~t~ee~~~l~~vl~ 34 (176)
T 3nwz_A 1 MDKRLQQDRIVDKME----RFLSTANEEEKDVLSSIVD 34 (176)
T ss_dssp ---------CCSTTC----TTTTSCCHHHHHHHHHHHH
T ss_pred CchHhhhhhhHHHHH----HHHHhCCHHHHHHHHHHHH
Confidence 788888 6665 2234578888888877765
No 49
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=38.90 E-value=14 Score=26.92 Aligned_cols=26 Identities=15% Similarity=0.014 Sum_probs=18.7
Q ss_pred CcceeccceeecccEEEeeCCCCCCH
Q psy17078 35 TQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 35 ~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
.+.+|+++|+|++++..++.+.++.+
T Consensus 147 ~~~~v~diM~p~~~~vtv~~~~~l~e 172 (496)
T 4fxs_A 147 LTKSVAAVMTPKERLATVKEGATGAE 172 (496)
T ss_dssp TTSBGGGTSEEGGGCCEEECC----C
T ss_pred CCCcHHHHhcCCCCCEEECCCCCHHH
Confidence 46789999999988888888877643
No 50
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=38.13 E-value=7 Score=25.96 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=20.4
Q ss_pred ccCcceeccceeecccEEEeeCCCCCCH
Q psy17078 33 EMTQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 33 el~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
.....+|+|||++ +|+.+..++++.+
T Consensus 9 ~~~~~~v~diMt~--~vvtv~~~~tv~~ 34 (250)
T 2d4z_A 9 NKYNIQVGDIMVR--DVTSIASTSTYGD 34 (250)
T ss_dssp CCSSCBTTSSSBS--SCCCEETTCBHHH
T ss_pred ccCCCChHHhcCC--CCeEECCCCCHHH
Confidence 3567899999986 7888888876644
No 51
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=36.62 E-value=7.3 Score=27.81 Aligned_cols=31 Identities=13% Similarity=0.154 Sum_probs=24.3
Q ss_pred HhHHHHHHhhhccCcceeccceeecccEEEeeCCCCCC
Q psy17078 22 KDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILN 59 (68)
Q Consensus 22 ~~E~~mi~g~lel~~~~V~diMtPr~~V~~L~~d~~l~ 59 (68)
+++++++..++++ +++|+| +++.++.+.++.
T Consensus 80 e~~~~~i~~v~~~-----~~im~~--~~~~v~~~~tv~ 110 (491)
T 1zfj_A 80 TEQAEEVRKVKRS-----ENGVII--DPFFLTPEHKVS 110 (491)
T ss_dssp HHHHHHHHHHHHH-----TTTTSS--SCCCBCSSSBHH
T ss_pred HHHHHHHHHHhhH-----HhcCcC--CCeEECCCCcHH
Confidence 6778899888775 679997 788888877653
No 52
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=35.63 E-value=21 Score=21.41 Aligned_cols=40 Identities=13% Similarity=0.075 Sum_probs=26.9
Q ss_pred CccCCHhHHHHHHhhh----ccCcceeccceeecccEEEeeCCCCCCH
Q psy17078 17 LVALKKDEVNIISGAL----EMTQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 17 ~g~l~~~E~~mi~g~l----el~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
-|.++..+ ++.... ...+.+|.++|.| .++.++.++++..
T Consensus 53 vGivt~~d--l~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~ 96 (184)
T 1pvm_A 53 VGLLSERS--IIKRFIPRNKKPDEVPIRLVMRK--PIPKVKSDYDVKD 96 (184)
T ss_dssp EEEEEHHH--HHHHTGGGCCCGGGSBGGGTSBS--SCCEEETTCBHHH
T ss_pred EEEEeHHH--HHHHHhhcccCcccCCHHHHhCC--CCcEECCCCCHHH
Confidence 35565544 444433 3567899999997 6778888877654
No 53
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=34.43 E-value=8.4 Score=28.07 Aligned_cols=26 Identities=27% Similarity=0.125 Sum_probs=0.0
Q ss_pred CcceeccceeecccEEEeeCCCCCCH
Q psy17078 35 TQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 35 ~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
.+.+|.++|+|+++++.++.+.++.+
T Consensus 145 ~~~~V~~vMtp~~~~vtv~~~~~l~e 170 (490)
T 4avf_A 145 AGDTVAAIMTPKDKLVTAREGTPLEE 170 (490)
T ss_dssp --------------------------
T ss_pred cCCcHHHHhccCCCCEEECCCCcHHH
Confidence 35679999999888888888887754
No 54
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=29.55 E-value=8.1 Score=24.29 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=18.0
Q ss_pred cceeccceeecccEEEeeCCCCCCH
Q psy17078 36 QKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 36 ~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
+.+|+++|+| +++.++.++++.+
T Consensus 71 ~~~v~~im~~--~~~~v~~~~~l~~ 93 (213)
T 1vr9_A 71 DSSVFNKVSL--PDFFVHEEDNITH 93 (213)
T ss_dssp TSBSGGGCBC--TTCCEETTSBHHH
T ss_pred CCcHHHHccC--CCEEECCCCcHHH
Confidence 3469999998 6788888887654
No 55
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=28.47 E-value=12 Score=27.18 Aligned_cols=27 Identities=26% Similarity=0.301 Sum_probs=0.0
Q ss_pred CcceeccceeecccEEEeeCCCCCCHH
Q psy17078 35 TQKKVEEIMTKLDDCYMLDIETILNFT 61 (68)
Q Consensus 35 ~~~~V~diMtPr~~V~~L~~d~~l~~~ 61 (68)
.+.+|+++|+|.+++..++.++++.+.
T Consensus 159 ~~~~V~diM~~~~~~~tv~~~~sl~ea 185 (503)
T 1me8_A 159 TETKVSDMMTPFSKLVTAHQDTKLSEA 185 (503)
T ss_dssp ---------------------------
T ss_pred ccCcHHHHhCCCCCCEEEcCCCcHHHH
Confidence 346799999999889999988877653
No 56
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=26.03 E-value=19 Score=20.07 Aligned_cols=24 Identities=0% Similarity=-0.165 Sum_probs=18.3
Q ss_pred CcceeccceeecccEEEeeCCCCCCH
Q psy17078 35 TQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 35 ~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
.+.+|+++|++. +..++.++++.+
T Consensus 3 ~s~~v~~~m~~~--~~~v~~~~~~~~ 26 (128)
T 3gby_A 3 ASVTFSYLAETD--YPVFTLGGSTAD 26 (128)
T ss_dssp TTCBGGGGCBCC--SCCEETTSBHHH
T ss_pred cceEHHHhhcCC--cceECCCCCHHH
Confidence 568999999875 677777777654
No 57
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=23.49 E-value=17 Score=26.01 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=0.0
Q ss_pred cceeccceeecccEEEeeCCCCCCH
Q psy17078 36 QKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 36 ~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
+.+|+++|+|++++..++.++++.+
T Consensus 154 ~~~v~~im~~~~~~~~v~~~~~l~e 178 (494)
T 1vrd_A 154 SKKIKDLMTPREKLIVAPPDISLEK 178 (494)
T ss_dssp -------------------------
T ss_pred CCcHHHHhCCCCCCeEECCCCCHHH
Confidence 3679999999888888888777654
No 58
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=23.43 E-value=30 Score=24.86 Aligned_cols=32 Identities=9% Similarity=0.351 Sum_probs=11.8
Q ss_pred HhHHHHHHhhhccCcceeccceeecccEEEeeCCCCCCH
Q psy17078 22 KDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 22 ~~E~~mi~g~lel~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
+++++++.+++++++ +|+ .++++++.+.++.+
T Consensus 83 e~~~~~I~~v~~~~~-----~m~--~~~~~v~~~~tv~e 114 (486)
T 2cu0_A 83 EEQVEQVKRVKRAER-----LIV--EDVITIAPDETVDF 114 (486)
T ss_dssp HHHHHHHHHHHTCC-------------------------
T ss_pred HHHHHHHHhhcchhh-----ccc--cCceEECCCCCHHH
Confidence 577899999998755 677 47888887766543
No 59
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=23.04 E-value=47 Score=20.83 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=14.3
Q ss_pred CccCCHhHHHHHHhhhc
Q psy17078 17 LVALKKDEVNIISGALE 33 (68)
Q Consensus 17 ~g~l~~~E~~mi~g~le 33 (68)
-+.|+++|+++|.++|.
T Consensus 14 Ls~LteeEr~~Il~VL~ 30 (153)
T 2zet_C 14 LSTLTDEEAEHVWAVVQ 30 (153)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHH
Confidence 35699999999999884
No 60
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=22.51 E-value=36 Score=20.75 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=20.1
Q ss_pred cccceecccCCCccCCHhHHHHHHhhhc
Q psy17078 6 KTGIPMEATSNLVALKKDEVNIISGALE 33 (68)
Q Consensus 6 k~Lv~lh~~~~~g~l~~~E~~mi~g~le 33 (68)
.+|+ +.....|.++++|+..+.+.++
T Consensus 34 ~all--~vAkADG~v~~~E~~~i~~~~~ 59 (161)
T 2ou3_A 34 KSVL--TCAKADGVISPEEKDWALGFCA 59 (161)
T ss_dssp HHHH--HHHHSSSCCCHHHHHHHHHHHH
T ss_pred HHHH--HHHhhcCCCCHHHHHHHHHHHH
Confidence 3454 5555678899999999999886
No 61
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=21.79 E-value=34 Score=19.06 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=21.3
Q ss_pred hhcccceecccCCCccCCHhHHHHHHhhh--ccCcceeccce
Q psy17078 4 KFKTGIPMEATSNLVALKKDEVNIISGAL--EMTQKKVEEIM 43 (68)
Q Consensus 4 elk~Lv~lh~~~~~g~l~~~E~~mi~g~l--el~~~~V~diM 43 (68)
||+..-..--.++.|.|+.+|..-+-..+ .+++..+.+++
T Consensus 37 el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~ 78 (100)
T 2lv7_A 37 EIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVII 78 (100)
T ss_dssp HHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHH
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 34443333344668889999854433333 34455555444
No 62
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=20.08 E-value=29 Score=25.04 Aligned_cols=26 Identities=15% Similarity=0.068 Sum_probs=13.6
Q ss_pred CcceeccceeecccEEEeeCCCCCCH
Q psy17078 35 TQKKVEEIMTKLDDCYMLDIETILNF 60 (68)
Q Consensus 35 ~~~~V~diMtPr~~V~~L~~d~~l~~ 60 (68)
.+.+|+++|+|+.++..++.++++.+
T Consensus 171 ~~~~v~~vm~~~~~~~tv~~~~~l~e 196 (514)
T 1jcn_A 171 HTTLLSEVMTPRIELVVAPAGVTLKE 196 (514)
T ss_dssp ----------CCBCCCCEETTCCSTT
T ss_pred CCCCHHHHhCCCCCCeEECCCCCHHH
Confidence 45789999999888899999888765
Done!