RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17078
(68 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.067
Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 15/58 (25%)
Query: 1 MKKKFKTGIPMEATSNLVALKKDEVNIISGAL-----EMTQKKVEEIMTKLDDCYMLD 53
+K F L +I + L ++ + V ++ KL +++
Sbjct: 371 YRKMFD---------RLSVFPPS-AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Score = 26.7 bits (58), Expect = 0.51
Identities = 8/72 (11%), Positives = 18/72 (25%), Gaps = 17/72 (23%)
Query: 6 KTGIPMEATSNLVALKKDEVNIISGALEMTQKKVEEIM----TKLD-----DCYMLDIET 56
T P S + +D + + K+ I+ L+ +
Sbjct: 323 LTTNPR-RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD----- 376
Query: 57 ILNFTVISEIVN 68
+V +
Sbjct: 377 --RLSVFPPSAH 386
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural
genomics, MCSG; HET: ADP; 1.80A {Bordetella
parapertussis}
Length = 173
Score = 28.2 bits (64), Expect = 0.12
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 19 ALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIET 56
A +E N++SG L + ++ + IMT D ++I+
Sbjct: 18 AFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDD 55
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella
oneidensis}
Length = 172
Score = 27.0 bits (61), Expect = 0.30
Identities = 5/38 (13%), Positives = 16/38 (42%)
Query: 19 ALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIET 56
++ +E ++ + ++ + +M D LD+
Sbjct: 24 VIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNL 61
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural
genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis
serogroup B}
Length = 156
Score = 26.6 bits (60), Expect = 0.43
Identities = 5/37 (13%), Positives = 12/37 (32%)
Query: 20 LKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIET 56
D + + L+ + +V + M +L
Sbjct: 21 FDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKEND 57
>3oco_A Hemolysin-like protein containing CBS domains; structural
genomics, PSI-2, protein structure initiative, MI
center for structural genomics, MCSG; 2.20A {Oenococcus
oeni}
Length = 153
Score = 25.5 bits (57), Expect = 1.2
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 20 LKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIET 56
+++ N + A EM K ++M ++D++
Sbjct: 3 ADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDE 39
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics,
protein structur initiative, midwest center for
structural genomics; 2.40A {Clostridium difficile 630}
Length = 148
Score = 24.7 bits (55), Expect = 1.9
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 20 LKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIET 56
+ + E ++ E +KK+ EIM D +
Sbjct: 6 IDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESD 42
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis,
anticapsin synthesis, BI-Cu double stranded beta helix,
antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus
subtilis} PDB: 3h7y_A* 3h9a_A*
Length = 243
Score = 24.8 bits (53), Expect = 2.2
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 27 IISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISE 65
++SG L MT V MT L+ Y+ ++
Sbjct: 60 VVSGELMMTVGDVTRKMTALESAYIAPPHVPHGARNDTD 98
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia,
iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A
{Methanosarcina barkeri}
Length = 807
Score = 24.8 bits (53), Expect = 2.8
Identities = 1/24 (4%), Positives = 5/24 (20%)
Query: 5 FKTGIPMEATSNLVALKKDEVNII 28
+ + K + +
Sbjct: 223 KADPEAPLVEIGMGTIDKSKPFLC 246
>3gp4_A Transcriptional regulator, MERR family; structural genomics,
DNA-BI transcription regulator, PSI-2; 1.85A {Listeria
monocytogenes str}
Length = 142
Score = 24.2 bits (53), Expect = 3.0
Identities = 9/43 (20%), Positives = 24/43 (55%)
Query: 6 KTGIPMEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDD 48
+ G+ +EA + +AL ++ + + E+ +K+ E+ ++D
Sbjct: 57 RAGLSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDV 99
>1jqk_A CODH, carbon monoxide dehydrogenase; rossmann fold, oxidoreductase;
2.80A {Rhodospirillum rubrum} SCOP: e.26.1.2
Length = 639
Score = 23.4 bits (50), Expect = 7.0
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 5 FKTGIPMEATSNLVALKKDEVNI-ISG----ALEMTQKKVEEIMTKL 46
F T P+ + +NL +K+ VNI ++G ++ ++ +
Sbjct: 238 FGTPQPVVSAANLGVMKRGAVNIAVNGHNPMLSDIICDVAADLRDEA 284
>1oao_A CODH, carbon monoxide dehydrogenase/acetyl-COA synthase beta;
oxidoreductase-transferase complex, electron transfer,
oxidoreductase; 1.90A {Moorella thermoacetica} SCOP:
e.26.1.2 PDB: 1mjg_A 2z8y_A 3i01_A 3i04_A
Length = 674
Score = 23.5 bits (50), Expect = 8.1
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 7 TGIPMEATSNLVALKKDEVNI-ISG----ALEMTQKKVEEIMTKL 46
T P+ + +N+ L D+VN + G E+ + E+ +
Sbjct: 258 TPQPVVSEANMGVLDPDQVNFVLHGHNPLLSEIIVQAAREMEGEA 302
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.344
Gapped
Lambda K H
0.267 0.0864 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 978,354
Number of extensions: 46155
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 19
Length of query: 68
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 30
Effective length of database: 5,640,795
Effective search space: 169223850
Effective search space used: 169223850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.2 bits)