RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17078
         (68 letters)



>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex,
          C-terminal domain {Thermus aquaticus [TaxId: 271]}
          Length = 126

 Score = 24.4 bits (53), Expect = 1.1
 Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 5/54 (9%)

Query: 8  GIPMEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFT 61
          G  +E    L       + I    L + ++  ++     D      I+ ILNF 
Sbjct: 47 GGVIEHVDLLPQRVPGRIEIA--LLTVPREAAQKA---ADLLVAAGIKGILNFA 95


>d1oaoa_ e.26.1.2 (A:) Bifunctional carbon monoxide
           dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH)
           subunit {Moorella thermoacetica [TaxId: 1525]}
          Length = 673

 Score = 24.4 bits (53), Expect = 1.4
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 5/47 (10%)

Query: 5   FKTGIPMEATSNLVALKKDEVNI-ISG----ALEMTQKKVEEIMTKL 46
           F T  P+ + +N+  L  D+VN  + G      E+  +   E+  + 
Sbjct: 255 FGTPQPVVSEANMGVLDPDQVNFVLHGHNPLLSEIIVQAAREMEGEA 301


>d1su7a_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
           {Carboxydothermus hydrogenoformans [TaxId: 129958]}
          Length = 633

 Score = 23.2 bits (50), Expect = 3.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 5   FKTGIPMEATSNLVALKKDEVNII 28
           F T  P+   SNL  LK D VN+ 
Sbjct: 231 FGTPAPVVTESNLGVLKADAVNVA 254


>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like
          Ubap2l {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 91

 Score = 22.5 bits (48), Expect = 4.7
 Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 32 LEMTQKKVEEIMTKLDDCYMLDIETILNF 60
          +++T K  +E +  L DC   D+   +N 
Sbjct: 40 IDITGKNQDECVIALHDCNG-DVNRAINV 67


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.344 

Gapped
Lambda     K      H
   0.267   0.0632    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 233,118
Number of extensions: 8494
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 9
Length of query: 68
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 31
Effective length of database: 1,899,586
Effective search space: 58887166
Effective search space used: 58887166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)