BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17079
(99 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZJK8|TCPH_CHICK T-complex protein 1 subunit eta OS=Gallus gallus GN=CCT7 PE=1 SV=1
Length = 553
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 40/56 (71%), Positives = 49/56 (87%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA 57
Q WYGVD+ EDI+DN E+CVWEPAIV+ NA+TAASEAACL++SVDETIKNP++
Sbjct: 470 QGGMWYGVDVNNEDIADNFEACVWEPAIVRINALTAASEAACLIVSVDETIKNPRS 525
>sp|P80313|TCPH_MOUSE T-complex protein 1 subunit eta OS=Mus musculus GN=Cct7 PE=1 SV=1
Length = 544
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 55/73 (75%), Gaps = 4/73 (5%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEG 61
Q WYGVDI E+I+DN ++ VWEPA+V+ NA+TAASEAACL++SVDETIKNP++ +
Sbjct: 470 QGGMWYGVDINNENIADNFQAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVDP 529
Query: 62 GQGMPMPGRGRGR 74
P P GRGR
Sbjct: 530 ----PAPSAGRGR 538
>sp|Q5R5C8|TCPH_PONAB T-complex protein 1 subunit eta OS=Pongo abelii GN=CCT7 PE=2 SV=1
Length = 543
Score = 90.9 bits (224), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/56 (69%), Positives = 48/56 (85%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA 57
Q WYGVDI EDI+DN E+ VWEPA+V+ NA+TAASEAACL++SVDETIKNP++
Sbjct: 470 QGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRS 525
>sp|Q99832|TCPH_HUMAN T-complex protein 1 subunit eta OS=Homo sapiens GN=CCT7 PE=1 SV=2
Length = 543
Score = 90.5 bits (223), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/56 (69%), Positives = 48/56 (85%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA 57
Q WYGVDI EDI+DN E+ VWEPA+V+ NA+TAASEAACL++SVDETIKNP++
Sbjct: 470 QGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRS 525
>sp|Q2NKZ1|TCPH_BOVIN T-complex protein 1 subunit eta OS=Bos taurus GN=CCT7 PE=1 SV=1
Length = 543
Score = 90.1 bits (222), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/56 (69%), Positives = 48/56 (85%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA 57
Q WYGVDI EDI+DN E+ VWEPA+V+ NA+TAASEAACL++SVDETIKNP++
Sbjct: 470 QGGMWYGVDINTEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRS 525
>sp|Q54ER7|TCPH_DICDI T-complex protein 1 subunit eta OS=Dictyostelium discoideum GN=cct7
PE=3 SV=1
Length = 555
Score = 75.9 bits (185), Expect = 8e-14, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 49/80 (61%), Gaps = 10/80 (12%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEG 61
Q W+GVDI E I D ES +WEP++VK N+I AA+EA CL+LSVDET++N +A E
Sbjct: 470 QGEKWFGVDIVNEGICDTYESAIWEPSLVKLNSIVAATEATCLILSVDETVQNNQA--EQ 527
Query: 62 GQGMPMP--------GRGRG 73
Q P RGRG
Sbjct: 528 AQAGPQINNQTRQALSRGRG 547
>sp|P87153|TCPH_SCHPO Probable T-complex protein 1 subunit eta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cct7 PE=1 SV=1
Length = 558
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 49/76 (64%), Gaps = 7/76 (9%)
Query: 6 WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKN-PKAGGEGGQG 64
W GVD+ E +++N E VWEP+ VK NAI +A+EAA L+LSVDETIKN P + QG
Sbjct: 479 WAGVDMDSEGVANNFEKFVWEPSTVKSNAILSATEAATLILSVDETIKNEPSQQPQAPQG 538
Query: 65 MPMPG------RGRGR 74
PG RGRGR
Sbjct: 539 ALPPGAANRIMRGRGR 554
>sp|P42943|TCPH_YEAST T-complex protein 1 subunit eta OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=CCT7 PE=1 SV=1
Length = 550
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 46/75 (61%), Gaps = 6/75 (8%)
Query: 6 WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQGM 65
WYGV E+I DN VWEPA+VK NA+ +A+EA L+LSVDETI N G E
Sbjct: 478 WYGVVFETENIGDNFAKFVWEPALVKINALNSATEATNLILSVDETITNK--GSESANAG 535
Query: 66 PMP----GRGRGRPI 76
MP GRGRG P+
Sbjct: 536 MMPPQGAGRGRGMPM 550
>sp|P54409|TCPH_TETPY T-complex protein 1 subunit eta OS=Tetrahymena pyriformis PE=3 SV=1
Length = 558
Score = 69.3 bits (168), Expect = 6e-12, Method: Composition-based stats.
Identities = 36/70 (51%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 7 YGVDITKED-ISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQGM 65
+GVDI D I +N E+ VWEP IV+KNA +AA+EAAC +LS+DET++NPK+
Sbjct: 478 FGVDINAVDGIGNNFENFVWEPIIVRKNAFSAATEAACTILSIDETVRNPKSEQPKA--- 534
Query: 66 PMPGRGRGRP 75
P G RG P
Sbjct: 535 PPGGLRRGGP 544
>sp|O77323|TCPH_PLAF7 T-complex protein 1 subunit eta OS=Plasmodium falciparum (isolate
3D7) GN=MAL3P3.6 PE=3 SV=1
Length = 539
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGG 62
S+ WYGVD + DI + ++C++E +K+N I +A+EAACL+LS+DETIKNP + G
Sbjct: 475 SDIWYGVDCMEGDIINAYDNCIFEVTKIKRNVIYSATEAACLILSIDETIKNPSSAA-GT 533
Query: 63 QGMP 66
Q P
Sbjct: 534 QRSP 537
>sp|O24735|THSB_SULTO Thermosome subunit beta OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=thsB PE=1 SV=1
Length = 552
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
++N WYG+++ + D + V EPA+VK NAI AA+EAA L+L +D+ I
Sbjct: 480 EANKWYGINVFTGQVEDMWKLGVIEPAVVKMNAIKAATEAATLILRIDDLI 530
>sp|P28488|THSB_SULSH Thermosome subunit beta OS=Sulfolobus shibatae GN=thsB PE=1 SV=1
Length = 552
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGG 59
++N WYG+++ + D + V EPA+VK NAI AA+EA LVL +D+ + K GG
Sbjct: 479 ETNKWYGLNLFTGNPEDMWKLGVIEPALVKMNAIKAATEAVTLVLRIDDIVAAGKKGG 536
>sp|Q9V2T4|THSB_SULAC Thermosome subunit beta OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=thsB PE=3 SV=2
Length = 553
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
++N W+G+++ I D V EPA+VK NAI AA+EA+ L+L +D+ I
Sbjct: 480 ETNKWHGINVYTGQIQDMWSLGVIEPAVVKMNAIKAATEASTLILRIDDLI 530
>sp|Q9V2T8|THSB_SULSO Thermosome subunit beta OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=thsB PE=3 SV=2
Length = 554
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGG 59
++N WYG+++ + D + V EPA+VK NA+ AA+EA LVL +D+ + K G
Sbjct: 479 ETNKWYGLNLFTGNPEDMWKLGVIEPALVKMNAVKAATEAVTLVLRIDDIVAAGKKSG 536
>sp|Q9YA66|THSB_AERPE Thermosome subunit beta OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=thsB PE=3
SV=2
Length = 548
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 4 NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
N WYGVD+ +I D V EP VK NA+ AA+E A L+L +D+ I
Sbjct: 482 NKWYGVDLDTGEIVDMWSRGVLEPMRVKLNALKAATEVASLILRIDDVI 530
>sp|P47079|TCPQ_YEAST T-complex protein 1 subunit theta OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CCT8 PE=1 SV=1
Length = 568
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 4 NCWYGVDI---TKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGE 60
+ + GVDI + E + D E +++ KK AI A+EAA VLS+D+ I KAGG
Sbjct: 494 HLYKGVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSIDQIIMAKKAGGP 553
Query: 61 GGQGMPMPG 69
P PG
Sbjct: 554 RAPQGPRPG 562
>sp|P41988|TCPA_CAEEL T-complex protein 1 subunit alpha OS=Caenorhabditis elegans
GN=cct-1 PE=3 SV=2
Length = 549
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 6 WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGG 62
W G+D+ + I DN E+ + EPA+ K ++ A+EAA +L +D+ IK K GG
Sbjct: 488 WAGLDLEEGTIRDNKEAGILEPALSKVKSLKFATEAAITILRIDDLIKLDKQEPLGG 544
>sp|P50157|TCPA_AMBME T-complex protein 1 subunit alpha (Fragment) OS=Ambystoma mexicanum
PE=2 SV=1
Length = 173
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 6 WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQG 64
W G+D+ DN ++ V+EP +VK ++ A+EAA +L +D+ IK + GQ
Sbjct: 103 WIGLDLVNGKARDNKQAGVFEPTMVKTKSLKFATEAAITILRIDDLIKLYPESNDKGQS 161
>sp|Q9HNI0|THSB_HALSA Thermosome subunit beta OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=thsB PE=3 SV=2
Length = 556
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 8 GVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
G+++ D+ D E+ V EPA K+ A+T+ASEAA LVL +D+ I
Sbjct: 481 GLNVLSGDLEDTFEAGVVEPAHAKEQAVTSASEAANLVLKIDDII 525
>sp|Q9V2Q7|THS_PYRAB Thermosome subunit OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=ths
PE=3 SV=1
Length = 550
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 8 GVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK 56
G+D+ + + +D ME V EP VKK AI +ASEAA ++L +D+ I K
Sbjct: 478 GIDVYEGEPADMMERGVIEPVRVKKQAIKSASEAAIMILRIDDVIAAQK 526
>sp|P39077|TCPG_YEAST T-complex protein 1 subunit gamma OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CCT3 PE=1 SV=2
Length = 534
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
Q N G+D K I D + +WEP ++K+ ++ A E+ACL+L VD+ +
Sbjct: 477 QGNFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLLLRVDDIV 527
>sp|O57762|THS_PYRHO Thermosome subunit OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=ths PE=3
SV=1
Length = 549
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 8 GVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
G+D+ + + +D ME V EP VKK AI +ASEAA ++L +D+ I
Sbjct: 478 GIDVYEGEPADMMERGVIEPVRVKKQAIKSASEAAIMILRIDDVI 522
>sp|Q4R5G2|TCPA_MACFA T-complex protein 1 subunit alpha OS=Macaca fascicularis GN=TCP1
PE=2 SV=1
Length = 556
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 6 WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
W G+D++ DN ++ V+EP IVK ++ A+EAA +L +D+ IK
Sbjct: 485 WIGLDLSNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 532
>sp|P17987|TCPA_HUMAN T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1
Length = 556
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 6 WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
W G+D++ DN ++ V+EP IVK ++ A+EAA +L +D+ IK
Sbjct: 485 WIGLDLSNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 532
>sp|Q9LKI7|TCPG_THAWE T-complex protein 1 subunit gamma OS=Thalassiosira weissflogii PE=2
SV=1
Length = 558
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 5 CWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGG 59
C +G+D T + D E VWEP VK I A E+AC++L +D+ + K G
Sbjct: 503 CNWGIDGTTGKLVDMEEFGVWEPFSVKVQTIKTAVESACMILRIDDIVSGSKKKG 557
>sp|Q9W790|TCPA_PALPA T-complex protein 1 subunit alpha OS=Paleosuchus palpebrosus
GN=TCP1 PE=2 SV=1
Length = 559
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 6 WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK-NPKAGGEGG 62
W G+D+ DN ++ V+EP +VK ++ A+EAA +L +D+ IK +P++ + G
Sbjct: 488 WIGLDLINGKPRDNKQAGVFEPTLVKTKSLKFATEAAITILRIDDLIKLHPESKDDKG 545
>sp|P11983|TCPA_MOUSE T-complex protein 1 subunit alpha OS=Mus musculus GN=Tcp1 PE=1 SV=3
Length = 556
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 6 WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
W G+D+ DN ++ V+EP IVK ++ A+EAA +L +D+ IK
Sbjct: 485 WIGLDLVHGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 532
>sp|Q32L40|TCPA_BOVIN T-complex protein 1 subunit alpha OS=Bos taurus GN=TCP1 PE=1 SV=1
Length = 556
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 6 WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
W G+D+ DN ++ V+EP IVK ++ A+EAA +L +D+ IK
Sbjct: 485 WIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 532
>sp|P28480|TCPA_RAT T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1
SV=1
Length = 556
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 6 WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
W G+D+ DN ++ V+EP IVK ++ A+EAA +L +D+ IK
Sbjct: 485 WIGLDLVHGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 532
>sp|P18279|TCPA_CRIGR T-complex protein 1 subunit alpha OS=Cricetulus griseus GN=TCP1
PE=2 SV=1
Length = 556
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 6 WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
W G+D+ DN ++ V+EP IVK ++ A+EAA +L +D+ IK
Sbjct: 485 WIGLDLINGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 532
>sp|O26885|THSB_METTH Thermosome subunit beta OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=thsB PE=3 SV=1
Length = 538
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
+ + + G+D+ I D E+ V EP VKK AI +A+EAA ++L +D+ I
Sbjct: 464 EESTYMGIDVFDGKIVDMKEAGVIEPHRVKKQAIQSAAEAAEMILRIDDVI 514
>sp|O00782|TCPG_OXYGR T-complex protein 1 subunit gamma OS=Oxytricha granulifera PE=3
SV=1
Length = 559
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 5 CWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGG 62
++G+D I D ES VW+P VK+ + + EA C++L +D+ + K GG
Sbjct: 479 LYWGIDGNTGKIRDMRESNVWDPISVKQQTLKTSIEATCMLLRIDDIVSGIKKDKRGG 536
>sp|O26320|THSA_METTH Thermosome subunit alpha OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=thsA PE=3 SV=2
Length = 542
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 6 WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
+ G+D+ +I D E+ V EP VKK AI +A+EAA ++L +D+ I
Sbjct: 468 YMGIDVFDGNIVDMKEAGVIEPQRVKKQAIQSAAEAAEMILRIDDMI 514
>sp|Q9XT06|TCPA_MONDO T-complex protein 1 subunit alpha OS=Monodelphis domestica GN=TCP1
PE=2 SV=1
Length = 557
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 6 WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
W G+D+ DN ++ V+EP +VK ++ A+EAA +L +D+ IK
Sbjct: 485 WIGLDLVNGKPRDNRQTGVFEPTMVKVKSLKFATEAAITILRIDDLIK 532
>sp|Q94757|TCPA_SCHMA T-complex protein 1 subunit alpha OS=Schistosoma mansoni GN=TCP-1A
PE=2 SV=1
Length = 545
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 4 NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
N W+G+D+ + ++D E V+EP + K ++ A+EAA +L +D+ IK
Sbjct: 480 NKWWGLDLNNQYVADCKEIGVFEPLVSKIKSLKFATEAAITILRIDDLIK 529
>sp|Q58405|THS_METJA Thermosome subunit OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=ths PE=3 SV=1
Length = 542
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 7 YGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK 56
YG+D+ + ++ D +E V EP VK AI +A+EA+ ++L +D+ I K
Sbjct: 475 YGLDVFEGEVVDMLEKGVVEPLKVKTQAIDSATEASVMLLRIDDVIAAEK 524
>sp|Q55BM4|TCPA_DICDI T-complex protein 1 subunit alpha OS=Dictyostelium discoideum
GN=tcp1 PE=2 SV=1
Length = 548
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK-NPK---A 57
+S + G+D+ + +N+E+ V EPAI K I A+E+A +L +D+ I NP+
Sbjct: 481 KSYAYSGLDLFNNKVRNNLEAGVLEPAIAKIKCIKFATESAITILRIDDKITLNPREQQG 540
Query: 58 GGEGGQG 64
G G G
Sbjct: 541 GDHEGHG 547
>sp|Q8SSC9|TCPA_ENCCU T-complex protein 1 subunit alpha OS=Encephalitozoon cuniculi
(strain GB-M1) GN=TCP1 PE=1 SV=1
Length = 540
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 8 GVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNP 55
G+D+T I DN E + EP++ K ++ AA+EAA +L ++E I P
Sbjct: 487 GIDVTSGKIQDNFEFGIIEPSVNKMKSLKAATEAAISILRINEVIILP 534
>sp|Q52500|THSB_PYRKO Thermosome subunit beta OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=thsB PE=3 SV=1
Length = 546
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 8 GVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI-----KNPKAGGEGG 62
GVD+ + + +D +E V P V K AI +ASEAA ++L +D+ I + K GG+GG
Sbjct: 478 GVDVFEGEPADMLERGVIAPVRVPKQAIKSASEAAIMILRIDDVIAASKLEKDKEGGKGG 537
>sp|O24730|THSB_THEK1 Thermosome subunit beta OS=Thermococcus sp. (strain KS-1) GN=thsB
PE=3 SV=2
Length = 546
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 8 GVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI-----KNPKAGGEGG 62
GVD+ + + +D +E V P V K AI +ASEAA ++L +D+ I + K GG+GG
Sbjct: 478 GVDVFEGEPADMLERGVIAPVRVPKQAIKSASEAAIMILRIDDVIAASKLEKDKEGGKGG 537
>sp|O93624|THS_METTL Thermosome subunit OS=Methanococcus thermolithotrophicus GN=ths
PE=1 SV=1
Length = 544
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK 56
+N +YG+++ D+ + E+ V EP VK AI +A+EA ++L +D+ I K
Sbjct: 469 NNAYYGLNVFTGDVENMTENGVVEPLRVKTQAIQSATEATEMLLRIDDVIAAEK 522
>sp|P12613|TCPA_DROME T-complex protein 1 subunit alpha OS=Drosophila melanogaster
GN=T-cp1 PE=2 SV=2
Length = 557
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 6 WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK-NPK 56
W G+D+ + + DN ++ V EPA+ K ++ A+EAA +L +D+ IK NP+
Sbjct: 488 WTGLDLIEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLNPE 539
>sp|P61112|THSA_THEK1 Thermosome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=thsA
PE=1 SV=1
Length = 548
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 8 GVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
G+D+ + +D +E + EP VKK AI +ASEAA ++L +D+ I
Sbjct: 478 GIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVI 522
>sp|P61111|THSA_PYRKO Thermosome subunit alpha OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=thsA PE=3 SV=1
Length = 548
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 8 GVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
G+D+ + +D +E + EP VKK AI +ASEAA ++L +D+ I
Sbjct: 478 GIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVI 522
>sp|P28769|TCPA_ARATH T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1
PE=2 SV=1
Length = 545
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 8 GVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEG 61
G+D+ I +N+E+ V EPA+ K I A+EAA +L +D+ IK K +G
Sbjct: 490 GLDLVNGTIRNNLEAGVIEPAMSKVKIIQFATEAAITILRIDDMIKLVKDESQG 543
>sp|O74341|TCPG_SCHPO T-complex protein 1 subunit gamma OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cct3 PE=1 SV=1
Length = 528
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 7 YGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGE 60
+G+D + D E VWEP VK +I A E+ACL+L VD+ + + E
Sbjct: 475 FGIDGETGRVVDMHEYGVWEPEAVKLQSIKTAIESACLLLRVDDIVSGVRKHSE 528
>sp|P48425|THSB_THEAC Thermosome subunit beta OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=thsB PE=1 SV=1
Length = 543
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
+ N YG+++ +I D +++ V EP V K AI +A+EAA ++L +D+ I
Sbjct: 470 KGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVI 520
>sp|O28045|THSA_ARCFU Thermosome subunit alpha OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=thsA PE=3 SV=1
Length = 545
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
+ YGVD+ +++ E V EP VK AIT+A+E A ++L +D+ I
Sbjct: 472 EGKTTYGVDVFSGEVACMKERGVLEPLKVKTQAITSATEVAIMILRIDDVI 522
>sp|P50016|THS_METKA Thermosome subunit OS=Methanopyrus kandleri (strain AV19 / DSM 6324
/ JCM 9639 / NBRC 100938) GN=ths PE=3 SV=1
Length = 545
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 8 GVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
G+D+ D+ D +E V EP VK A+ +A+EAA ++L +D+ I
Sbjct: 480 GIDVYDGDVKDMLEEGVVEPLRVKTQALASATEAAEMILRIDDVI 524
>sp|Q53546|THS_DESSY Thermosome subunit OS=Desulfurococcus sp. (strain SY) GN=ths PE=3
SV=1
Length = 545
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 8 GVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK 56
GVD+ + + +D ME V P V K AI +ASEAA ++L +D+ I K
Sbjct: 478 GVDVFEGEPADMMEKGVIAPLRVPKQAIKSASEAAIMILRIDDVIAASK 526
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,155,714
Number of Sequences: 539616
Number of extensions: 1559858
Number of successful extensions: 3438
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 3262
Number of HSP's gapped (non-prelim): 263
length of query: 99
length of database: 191,569,459
effective HSP length: 68
effective length of query: 31
effective length of database: 154,875,571
effective search space: 4801142701
effective search space used: 4801142701
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)