Query psy17079
Match_columns 99
No_of_seqs 130 out of 1059
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 21:18:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0361|consensus 99.6 8.4E-16 1.8E-20 126.3 5.3 74 2-76 470-543 (543)
2 PRK12852 groEL chaperonin GroE 99.4 4.7E-13 1E-17 111.6 7.3 63 5-67 475-537 (545)
3 PRK12850 groEL chaperonin GroE 99.4 3.5E-13 7.7E-18 112.5 6.6 65 5-69 474-538 (544)
4 cd03335 TCP1_alpha TCP-1 (CTT 99.4 2.2E-13 4.7E-18 112.6 4.6 53 4-56 475-527 (527)
5 TIGR02347 chap_CCT_zeta T-comp 99.4 3.6E-13 7.7E-18 112.0 5.3 55 3-57 474-528 (531)
6 PRK12851 groEL chaperonin GroE 99.4 6.2E-13 1.4E-17 111.0 6.6 61 5-65 474-534 (541)
7 cd03342 TCP1_zeta TCP-1 (CTT o 99.4 4.3E-13 9.2E-18 110.2 5.2 53 3-55 431-483 (484)
8 PRK00013 groEL chaperonin GroE 99.4 1.3E-12 2.8E-17 109.2 7.1 61 5-65 474-534 (542)
9 PTZ00212 T-complex protein 1 s 99.4 7.1E-13 1.5E-17 110.0 5.4 54 3-56 474-527 (533)
10 TIGR02341 chap_CCT_beta T-comp 99.4 7.6E-13 1.6E-17 109.6 5.5 55 3-57 463-517 (519)
11 TIGR02346 chap_CCT_theta T-com 99.4 8.7E-13 1.9E-17 109.5 5.9 61 3-63 466-528 (531)
12 cd03340 TCP1_eta TCP-1 (CTT or 99.4 7.5E-13 1.6E-17 109.2 5.1 52 5-56 470-521 (522)
13 cd03336 TCP1_beta TCP-1 (CTT o 99.4 9.3E-13 2E-17 108.8 5.6 54 3-56 462-515 (517)
14 TIGR02340 chap_CCT_alpha T-com 99.3 1.4E-12 3E-17 108.2 5.7 52 5-56 480-531 (536)
15 TIGR02342 chap_CCT_delta T-com 99.3 9.1E-13 2E-17 108.9 4.0 52 3-54 465-516 (517)
16 PRK12849 groEL chaperonin GroE 99.3 2.9E-12 6.2E-17 107.2 6.7 54 5-58 473-526 (542)
17 cd03338 TCP1_delta TCP-1 (CTT 99.3 1.3E-12 2.9E-17 107.5 4.4 52 3-54 464-515 (515)
18 TIGR02345 chap_CCT_eta T-compl 99.3 2.2E-12 4.7E-17 106.7 5.3 54 3-56 468-521 (522)
19 TIGR02344 chap_CCT_gamma T-com 99.3 2.4E-12 5.3E-17 106.3 5.5 53 4-56 471-523 (525)
20 PRK14104 chaperonin GroEL; Pro 99.3 5.7E-12 1.2E-16 105.5 7.5 60 4-63 474-533 (546)
21 cd03343 cpn60 cpn60 chaperonin 99.3 3E-12 6.5E-17 105.3 5.2 53 3-55 465-517 (517)
22 PLN03167 Chaperonin-60 beta su 99.3 7E-12 1.5E-16 106.2 7.0 54 3-56 529-582 (600)
23 TIGR02339 thermosome_arch ther 99.3 3.7E-12 8E-17 105.1 5.1 52 3-54 468-519 (519)
24 cd03339 TCP1_epsilon TCP-1 (CT 99.3 3.4E-12 7.5E-17 105.5 4.3 50 4-53 477-526 (526)
25 cd03341 TCP1_theta TCP-1 (CTT 99.3 4E-12 8.7E-17 104.1 4.2 52 3-54 418-471 (472)
26 cd03337 TCP1_gamma TCP-1 (CTT 99.3 5E-12 1.1E-16 103.7 4.4 50 4-53 430-479 (480)
27 KOG0363|consensus 99.2 3.8E-12 8.3E-17 104.5 3.6 59 2-60 466-524 (527)
28 CHL00093 groEL chaperonin GroE 99.2 1.1E-11 2.4E-16 103.1 5.1 52 5-56 475-526 (529)
29 TIGR02343 chap_CCT_epsi T-comp 99.2 1.5E-11 3.2E-16 102.3 4.7 51 4-54 481-531 (532)
30 PTZ00114 Heat shock protein 60 99.2 3.2E-11 7E-16 101.0 6.7 56 3-58 488-543 (555)
31 cd00309 chaperonin_type_I_II c 99.2 1.9E-11 4.2E-16 99.1 4.9 51 3-53 414-464 (464)
32 PF00118 Cpn60_TCP1: TCP-1/cpn 99.2 9.4E-12 2E-16 99.6 2.5 52 5-56 434-485 (485)
33 TIGR02348 GroEL chaperonin Gro 99.1 1.1E-10 2.5E-15 97.0 4.9 50 6-55 473-522 (524)
34 COG0459 GroL Chaperonin GroEL 99.1 1.5E-10 3.2E-15 97.1 5.6 53 6-58 464-517 (524)
35 KOG0362|consensus 99.1 8.2E-11 1.8E-15 98.4 3.5 60 4-63 469-529 (537)
36 cd03344 GroEL GroEL_like type 98.9 5.3E-10 1.1E-14 93.1 3.8 48 6-53 472-519 (520)
37 KOG0358|consensus 98.8 2.9E-09 6.2E-14 88.1 2.7 53 2-54 481-533 (534)
38 KOG0364|consensus 98.8 4.4E-09 9.6E-14 87.6 2.9 58 2-59 468-525 (527)
39 KOG0357|consensus 98.5 5.2E-08 1.1E-12 79.2 2.7 53 3-55 344-396 (400)
40 KOG0360|consensus 98.2 7.2E-07 1.6E-11 75.0 2.3 55 3-57 484-538 (545)
41 KOG0359|consensus 98.0 5E-06 1.1E-10 69.6 3.6 51 7-57 467-517 (520)
42 KOG0356|consensus 95.8 0.0055 1.2E-07 52.4 1.9 53 6-58 488-540 (550)
No 1
>KOG0361|consensus
Probab=99.60 E-value=8.4e-16 Score=126.32 Aligned_cols=74 Identities=65% Similarity=1.008 Sum_probs=65.8
Q ss_pred CCCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCCCCCCCCCCCCCCCCCcc
Q psy17079 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQGMPMPGRGRGRPI 76 (99)
Q Consensus 2 ~G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~~~~~~~~~~~~~~~~~~ 76 (99)
+|..|||||++++.+.|+++.+||||..||.++|++|+|||++||+||++|++++++.+++.++.+ +.++|||+
T Consensus 470 ~G~~w~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn~~S~~~~p~~a~r-grg~g~p~ 543 (543)
T KOG0361|consen 470 QGEKWYGVDINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSVDETIKNPKSQSAPPSAAGR-GRGRGRPR 543 (543)
T ss_pred cCCceeeeeecccchhhHHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcCCcccCCCCCcccc-CCCCCCCC
Confidence 588999999999999999999999999999999999999999999999999999988775554445 66667775
No 2
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=99.41 E-value=4.7e-13 Score=111.64 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=54.4
Q ss_pred ceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCCCCCCCCCC
Q psy17079 5 CWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQGMPM 67 (99)
Q Consensus 5 ~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~~~~~~~~~ 67 (99)
.++|+|+.+|++.||++.|||||+.||.++|++|+++|++||+||++|+.++......+.+++
T Consensus 475 ~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~~~~~~~~~ 537 (545)
T PRK12852 475 ETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKKDAAPAMPAG 537 (545)
T ss_pred CCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhHHHHhhcCCCCCCCCCCCCC
Confidence 468999999999999999999999999999999999999999999999987665433333333
No 3
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=99.41 E-value=3.5e-13 Score=112.54 Aligned_cols=65 Identities=20% Similarity=0.391 Sum_probs=57.3
Q ss_pred ceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCCCCCCCCCCCC
Q psy17079 5 CWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQGMPMPG 69 (99)
Q Consensus 5 ~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~~~~~~~~~~~ 69 (99)
.++|+|+.+|.+.||.+.|||||+.||.++|++|+++|++||+||++|+.++.+.++..++|.|+
T Consensus 474 ~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~~~~~~~~~~~~ 538 (544)
T PRK12850 474 GNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEAPKKAAAAAAGPGPG 538 (544)
T ss_pred CCcceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCCCCCCCCCCCC
Confidence 36899999999999999999999999999999999999999999999999887766555554433
No 4
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.40 E-value=2.2e-13 Score=112.63 Aligned_cols=53 Identities=36% Similarity=0.616 Sum_probs=49.8
Q ss_pred CceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCC
Q psy17079 4 NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK 56 (99)
Q Consensus 4 ~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~ 56 (99)
+.++|||+.+|.+.||++.|||||+.||.++|++|+|+|++|||||++|+++|
T Consensus 475 ~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii~~~~ 527 (527)
T cd03335 475 LKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIKLNP 527 (527)
T ss_pred CceEeEECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhcceeecCC
Confidence 34789999999999999999999999999999999999999999999998754
No 5
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.39 E-value=3.6e-13 Score=112.05 Aligned_cols=55 Identities=27% Similarity=0.364 Sum_probs=51.4
Q ss_pred CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCC
Q psy17079 3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA 57 (99)
Q Consensus 3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~ 57 (99)
|+.++|+|+.+|.+.||++.|||||+.||+++|++|+|+|++|||||+||++++.
T Consensus 474 ~~~~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~~~ 528 (531)
T TIGR02347 474 GGEVVGVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGRS 528 (531)
T ss_pred cCCceeeeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCccc
Confidence 4457899999999999999999999999999999999999999999999998765
No 6
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=99.39 E-value=6.2e-13 Score=111.01 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=54.8
Q ss_pred ceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCCCCCCCC
Q psy17079 5 CWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQGM 65 (99)
Q Consensus 5 ~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~~~~~~~ 65 (99)
.++|+|+.+|++.||.+.|||||+.||.++|++|+++|++||+||++|++++.+.++.+..
T Consensus 474 ~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~~~~~ 534 (541)
T PRK12851 474 GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKPKKEPAPPAP 534 (541)
T ss_pred CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCCCCCCCCC
Confidence 3689999999999999999999999999999999999999999999999987766654433
No 7
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.38 E-value=4.3e-13 Score=110.18 Aligned_cols=53 Identities=26% Similarity=0.361 Sum_probs=50.1
Q ss_pred CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCC
Q psy17079 3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNP 55 (99)
Q Consensus 3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~ 55 (99)
++.++|||+.+|.+.||++.|||||+.||+++|++|+|+|++|||||+||+++
T Consensus 431 ~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~~~ 483 (484)
T cd03342 431 GGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRAG 483 (484)
T ss_pred cCCceeeeCCCCcccchhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence 45578999999999999999999999999999999999999999999999875
No 8
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=99.36 E-value=1.3e-12 Score=109.22 Aligned_cols=61 Identities=20% Similarity=0.339 Sum_probs=54.2
Q ss_pred ceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCCCCCCCC
Q psy17079 5 CWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQGM 65 (99)
Q Consensus 5 ~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~~~~~~~ 65 (99)
.++|+|+.+|++.||++.|||||+.||.++|++|+++|++||+||++|.+++....++|+.
T Consensus 474 ~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~~~~~~~~ 534 (542)
T PRK00013 474 KGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVVADKPEKKAAAPPM 534 (542)
T ss_pred CCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCC
Confidence 3689999999999999999999999999999999999999999999999877654444433
No 9
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=99.36 E-value=7.1e-13 Score=109.97 Aligned_cols=54 Identities=31% Similarity=0.376 Sum_probs=50.9
Q ss_pred CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCC
Q psy17079 3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK 56 (99)
Q Consensus 3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~ 56 (99)
++.++|||+.+|.+.||++.|||||+.||+++|++|+|+|++|||||++|..++
T Consensus 474 ~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~ 527 (533)
T PTZ00212 474 GNKTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCAP 527 (533)
T ss_pred cCCccceeccCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhhHhhhcCC
Confidence 456799999999999999999999999999999999999999999999998864
No 10
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.36 E-value=7.6e-13 Score=109.63 Aligned_cols=55 Identities=31% Similarity=0.417 Sum_probs=51.6
Q ss_pred CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCC
Q psy17079 3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA 57 (99)
Q Consensus 3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~ 57 (99)
|+.++|||+.+|.+.||++.|||||+.||+++|++|+|+|++|||||++|+++|.
T Consensus 463 ~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~ 517 (519)
T TIGR02341 463 GNHTMGLDMEEGEIADMRKLGIIESYKVKRAVVSSAAEAAEVILRVDNIIKAAPR 517 (519)
T ss_pred CCCccceecCCCcccchhhccceEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCCC
Confidence 4557899999999999999999999999999999999999999999999998763
No 11
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.36 E-value=8.7e-13 Score=109.52 Aligned_cols=61 Identities=38% Similarity=0.467 Sum_probs=54.1
Q ss_pred CCceeeeeccCCc--cccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCCCCCC
Q psy17079 3 SNCWYGVDITKED--ISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQ 63 (99)
Q Consensus 3 G~~~~GVdi~~G~--i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~~~~~ 63 (99)
++.++|+|+.+|. +.||++.|||||+.||+++|++|+|+|++|||||++|..++...++.|
T Consensus 466 ~~~~~Gid~~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~~~~~~ 528 (531)
T TIGR02346 466 GNTSSGIDIEAESDGVKDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMAKPAGGPKPP 528 (531)
T ss_pred cCCccceeeeCCCccccChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhccCCCCCCCCC
Confidence 4557899999999 599999999999999999999999999999999999998765555443
No 12
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.36 E-value=7.5e-13 Score=109.25 Aligned_cols=52 Identities=73% Similarity=1.192 Sum_probs=49.8
Q ss_pred ceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCC
Q psy17079 5 CWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK 56 (99)
Q Consensus 5 ~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~ 56 (99)
.++|||+.+|.+.||++.|||||+.||+++|++|+|+|++|||||++|++++
T Consensus 470 ~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~id~ii~~~~ 521 (522)
T cd03340 470 KWYGVDINNEGIADNFEAFVWEPSLVKINALTAATEAACLILSVDETIKNPK 521 (522)
T ss_pred CeeeeeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHhhhhhheeCCC
Confidence 5799999999999999999999999999999999999999999999998864
No 13
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.35 E-value=9.3e-13 Score=108.81 Aligned_cols=54 Identities=35% Similarity=0.414 Sum_probs=51.2
Q ss_pred CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCC
Q psy17079 3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK 56 (99)
Q Consensus 3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~ 56 (99)
|+.++|||+.+|.+.||++.|||||+.||+++|++|+|+|++|||||++|.+++
T Consensus 462 ~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 515 (517)
T cd03336 462 GNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCAP 515 (517)
T ss_pred CCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhHhHHhhcCC
Confidence 556799999999999999999999999999999999999999999999999865
No 14
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.34 E-value=1.4e-12 Score=108.21 Aligned_cols=52 Identities=40% Similarity=0.653 Sum_probs=49.7
Q ss_pred ceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCC
Q psy17079 5 CWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK 56 (99)
Q Consensus 5 ~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~ 56 (99)
.++|+|+.+|.+.||++.|||||+.||.++|++|+|+|++|||||++|.+++
T Consensus 480 ~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~~~ 531 (536)
T TIGR02340 480 KWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLNP 531 (536)
T ss_pred ceEeEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhhhhhcCC
Confidence 4689999999999999999999999999999999999999999999998865
No 15
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.33 E-value=9.1e-13 Score=108.89 Aligned_cols=52 Identities=29% Similarity=0.510 Sum_probs=49.4
Q ss_pred CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhC
Q psy17079 3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKN 54 (99)
Q Consensus 3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a 54 (99)
|+.++|+|+.+|.+.||++.|||||+.||+++|++|+|+|++|||||+||.+
T Consensus 465 ~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~~ 516 (517)
T TIGR02342 465 GEKYAGISVRKGGITDMLEEEVLQPLLVTTSAVTLASETVRMILKIDDIVFT 516 (517)
T ss_pred CCCccceecCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHhcccceeec
Confidence 5567999999999999999999999999999999999999999999999875
No 16
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=99.32 E-value=2.9e-12 Score=107.18 Aligned_cols=54 Identities=17% Similarity=0.329 Sum_probs=50.9
Q ss_pred ceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCC
Q psy17079 5 CWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAG 58 (99)
Q Consensus 5 ~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~ 58 (99)
.++|+|+.+|++.||.+.|||||+.||.++|++|+++|++||+||++|+.++.+
T Consensus 473 ~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~ 526 (542)
T PRK12849 473 DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADKPEE 526 (542)
T ss_pred CCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHhcCCcc
Confidence 368999999999999999999999999999999999999999999999987754
No 17
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.32 E-value=1.3e-12 Score=107.48 Aligned_cols=52 Identities=27% Similarity=0.449 Sum_probs=49.2
Q ss_pred CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhC
Q psy17079 3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKN 54 (99)
Q Consensus 3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a 54 (99)
++.++|+|+.+|.+.||++.|||||+.||+++|++|+++|++|||||+||++
T Consensus 464 ~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii~~ 515 (515)
T cd03338 464 GEKNAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMILKIDDIVLA 515 (515)
T ss_pred cCCccceeccCCCccchhhcCceecHHHHHHHHHHHHHHHHHHhccchhhcC
Confidence 4567999999999999999999999999999999999999999999999864
No 18
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.31 E-value=2.2e-12 Score=106.73 Aligned_cols=54 Identities=67% Similarity=1.086 Sum_probs=50.5
Q ss_pred CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCC
Q psy17079 3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK 56 (99)
Q Consensus 3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~ 56 (99)
++.++|+|+.+|.+.||++.|||||+.||+++|++|+|+|++|||||++|+++.
T Consensus 468 ~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 521 (522)
T TIGR02345 468 GGKWYGVDINTEDIGDNFENFVWEPLLVKKNALKAAFEAACTILSIDETIMNPK 521 (522)
T ss_pred CCCccceeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHHhHHHHHhCCC
Confidence 445799999999999999999999999999999999999999999999998754
No 19
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.31 E-value=2.4e-12 Score=106.26 Aligned_cols=53 Identities=36% Similarity=0.668 Sum_probs=50.2
Q ss_pred CceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCC
Q psy17079 4 NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK 56 (99)
Q Consensus 4 ~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~ 56 (99)
+.++|||+.+|.+.||++.|||||+.||+++|++|+|+|++|||||++|.+.+
T Consensus 471 ~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 523 (525)
T TIGR02344 471 NCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSGVK 523 (525)
T ss_pred CCeEeEECCCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHhhcCC
Confidence 45799999999999999999999999999999999999999999999998755
No 20
>PRK14104 chaperonin GroEL; Provisional
Probab=99.30 E-value=5.7e-12 Score=105.47 Aligned_cols=60 Identities=20% Similarity=0.374 Sum_probs=53.2
Q ss_pred CceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCCCCCC
Q psy17079 4 NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQ 63 (99)
Q Consensus 4 ~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~~~~~ 63 (99)
..++|+|+.+|++.||++.|||||+.||.++|++|+++|++||+||++|..++...+..+
T Consensus 474 ~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~id~~I~~~~~~~~~~~ 533 (546)
T PRK14104 474 QYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKKGGAGP 533 (546)
T ss_pred CCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCC
Confidence 346899999999999999999999999999999999999999999999988665544333
No 21
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.29 E-value=3e-12 Score=105.32 Aligned_cols=53 Identities=38% Similarity=0.523 Sum_probs=49.7
Q ss_pred CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCC
Q psy17079 3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNP 55 (99)
Q Consensus 3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~ 55 (99)
++.++|+|+.+|.+.||++.|||||+.||+++|++|+|+|++||+||++|+++
T Consensus 465 ~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 517 (517)
T cd03343 465 GNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIAAK 517 (517)
T ss_pred cCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhhhHhhhCC
Confidence 45679999999999999999999999999999999999999999999999764
No 22
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=99.28 E-value=7e-12 Score=106.22 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=50.8
Q ss_pred CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCC
Q psy17079 3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK 56 (99)
Q Consensus 3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~ 56 (99)
++.++|+|+.+|++.||++.|||||+.||+++|++|+++|++||+||++|+.++
T Consensus 529 ~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~iI~~~~ 582 (600)
T PLN03167 529 DNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIK 582 (600)
T ss_pred CCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 345789999999999999999999999999999999999999999999999864
No 23
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=99.28 E-value=3.7e-12 Score=105.09 Aligned_cols=52 Identities=37% Similarity=0.514 Sum_probs=48.9
Q ss_pred CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhC
Q psy17079 3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKN 54 (99)
Q Consensus 3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a 54 (99)
++.++|||+.+|.+.||++.|||||+.||+++|++|+|+|++|||||++|++
T Consensus 468 ~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 519 (519)
T TIGR02339 468 GNKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIAA 519 (519)
T ss_pred cCCceeEEcCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHHhHhHHhhC
Confidence 4567999999999999999999999999999999999999999999999863
No 24
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.27 E-value=3.4e-12 Score=105.53 Aligned_cols=50 Identities=30% Similarity=0.404 Sum_probs=47.6
Q ss_pred CceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhh
Q psy17079 4 NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53 (99)
Q Consensus 4 ~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~ 53 (99)
+.++|+|+.+|.+.||++.|||||+.||+++|++|+|+|++|||||++|+
T Consensus 477 ~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii~ 526 (526)
T cd03339 477 NPHLGIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV 526 (526)
T ss_pred CCeEeeecCCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhhceecC
Confidence 45799999999999999999999999999999999999999999999984
No 25
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.26 E-value=4e-12 Score=104.07 Aligned_cols=52 Identities=38% Similarity=0.406 Sum_probs=49.1
Q ss_pred CCceeeeeccCC--ccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhC
Q psy17079 3 SNCWYGVDITKE--DISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKN 54 (99)
Q Consensus 3 G~~~~GVdi~~G--~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a 54 (99)
++.++|+|+.+| ++.||++.|||||+.||+++|++|+|+|++|||||++|.+
T Consensus 418 ~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 471 (472)
T cd03341 418 GNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQIIMA 471 (472)
T ss_pred cCCeeeeeccCCCCCccChhhccceecHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 455799999999 9999999999999999999999999999999999999865
No 26
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.25 E-value=5e-12 Score=103.70 Aligned_cols=50 Identities=36% Similarity=0.647 Sum_probs=47.8
Q ss_pred CceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhh
Q psy17079 4 NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53 (99)
Q Consensus 4 ~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~ 53 (99)
+.++|||+.+|.+.||++.|||||+.+|+++|++|+|+|++|||||++|.
T Consensus 430 ~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 479 (480)
T cd03337 430 NSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVS 479 (480)
T ss_pred CCeECeeccCCCcccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhheec
Confidence 45799999999999999999999999999999999999999999999985
No 27
>KOG0363|consensus
Probab=99.25 E-value=3.8e-12 Score=104.50 Aligned_cols=59 Identities=32% Similarity=0.404 Sum_probs=55.3
Q ss_pred CCCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCCC
Q psy17079 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGE 60 (99)
Q Consensus 2 ~G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~~ 60 (99)
+|++++|||+++|.|.||++.||+|+|.||++++.+|.|+|.+|||+|.||++.|+.+.
T Consensus 466 ~g~~t~Gld~~~G~i~dm~~~Gi~es~~vK~~vv~sasEaae~ilrvD~Iik~aPR~r~ 524 (527)
T KOG0363|consen 466 NGRTTMGLDVRNGEIGDMRELGIVESLKVKQAVVSSASEAAEMILRVDNIIKAAPRERE 524 (527)
T ss_pred cCCcccccccccCchhhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhcCCcccc
Confidence 57889999999999999999999999999999999999999999999999999877543
No 28
>CHL00093 groEL chaperonin GroEL
Probab=99.22 E-value=1.1e-11 Score=103.14 Aligned_cols=52 Identities=21% Similarity=0.343 Sum_probs=49.6
Q ss_pred ceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCC
Q psy17079 5 CWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK 56 (99)
Q Consensus 5 ~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~ 56 (99)
.++|+|+.+|.+.||++.|||||+.||.++|++|+++|++||+||++|..++
T Consensus 475 ~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~ii~~~~ 526 (529)
T CHL00093 475 FEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTECIIVDKK 526 (529)
T ss_pred CCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4789999999999999999999999999999999999999999999999764
No 29
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.20 E-value=1.5e-11 Score=102.27 Aligned_cols=51 Identities=31% Similarity=0.413 Sum_probs=48.3
Q ss_pred CceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhC
Q psy17079 4 NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKN 54 (99)
Q Consensus 4 ~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a 54 (99)
+.++|+|+.+|.+.||++.|||||+.||+++|++|+|+|++|||||++|..
T Consensus 481 ~~~~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~~ 531 (532)
T TIGR02343 481 NPHLGVDCLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKIDDVISP 531 (532)
T ss_pred CCccCeeCCCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhHhhhccC
Confidence 457999999999999999999999999999999999999999999999953
No 30
>PTZ00114 Heat shock protein 60; Provisional
Probab=99.20 E-value=3.2e-11 Score=100.97 Aligned_cols=56 Identities=20% Similarity=0.337 Sum_probs=51.8
Q ss_pred CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCC
Q psy17079 3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAG 58 (99)
Q Consensus 3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~ 58 (99)
++.++|+|+.+|++.||++.|||||+.||.++|++|+++|++||+||++|++.+..
T Consensus 488 ~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~ 543 (555)
T PTZ00114 488 KDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAAIVDLPKE 543 (555)
T ss_pred CCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhHHHHHHhCCcc
Confidence 45578999999999999999999999999999999999999999999999986543
No 31
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.19 E-value=1.9e-11 Score=99.10 Aligned_cols=51 Identities=33% Similarity=0.489 Sum_probs=47.9
Q ss_pred CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhh
Q psy17079 3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53 (99)
Q Consensus 3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~ 53 (99)
+..++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|+
T Consensus 414 ~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 464 (464)
T cd00309 414 GGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV 464 (464)
T ss_pred cCCCeeEECCCCcEeehhhccCeecHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 345789999999999999999999999999999999999999999999984
No 32
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=99.18 E-value=9.4e-12 Score=99.62 Aligned_cols=52 Identities=35% Similarity=0.539 Sum_probs=49.8
Q ss_pred ceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCC
Q psy17079 5 CWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK 56 (99)
Q Consensus 5 ~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~ 56 (99)
.++|+|+.+|.+.||.+.|||||+.+|.++|+.|+|+|++|||||++|.++|
T Consensus 434 ~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A~~~a~~iL~id~iI~~~~ 485 (485)
T PF00118_consen 434 NNYGIDLDTGEIVDMKEAGILDPLLVKISALKSAVEIASLILRIDEIIMAKP 485 (485)
T ss_dssp TTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEESS
T ss_pred cccCcCccCCceeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4899999999999999999999999999999999999999999999998764
No 33
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=99.08 E-value=1.1e-10 Score=97.02 Aligned_cols=50 Identities=20% Similarity=0.411 Sum_probs=47.6
Q ss_pred eeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCC
Q psy17079 6 WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNP 55 (99)
Q Consensus 6 ~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~ 55 (99)
++|+|+.+|++.||++.|||||+.||.++|++|+++|++||+||++|...
T Consensus 473 ~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~ii~~~ 522 (524)
T TIGR02348 473 NFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVADK 522 (524)
T ss_pred CeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhcC
Confidence 48999999999999999999999999999999999999999999999753
No 34
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.5e-10 Score=97.10 Aligned_cols=53 Identities=32% Similarity=0.510 Sum_probs=50.1
Q ss_pred eeeeeccCCcc-ccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCC
Q psy17079 6 WYGVDITKEDI-SDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAG 58 (99)
Q Consensus 6 ~~GVdi~~G~i-~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~ 58 (99)
++|+|+.+|++ .||++.|||||+.||+++|++|+++|.+||+||++|.+++..
T Consensus 464 ~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~d~iI~~~~~~ 517 (524)
T COG0459 464 NYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEE 517 (524)
T ss_pred ccceeccCCccccchHhccCcChHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Confidence 58999999999 679999999999999999999999999999999999997765
No 35
>KOG0362|consensus
Probab=99.07 E-value=8.2e-11 Score=98.45 Aligned_cols=60 Identities=40% Similarity=0.497 Sum_probs=55.3
Q ss_pred CceeeeeccCC-ccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCCCCCC
Q psy17079 4 NCWYGVDITKE-DISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQ 63 (99)
Q Consensus 4 ~~~~GVdi~~G-~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~~~~~ 63 (99)
..+.|+|+... .+.|++++||||-+.+|.++|++|+|+|.++|+||+||+++++++|++|
T Consensus 469 g~~~g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak~aggp~~~ 529 (537)
T KOG0362|consen 469 GKNLGMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAKKAGGPKPP 529 (537)
T ss_pred CCcceeeeeccccccChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEecccCCCCCC
Confidence 34578998776 5889999999999999999999999999999999999999999999888
No 36
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=98.95 E-value=5.3e-10 Score=93.09 Aligned_cols=48 Identities=23% Similarity=0.416 Sum_probs=46.4
Q ss_pred eeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhh
Q psy17079 6 WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53 (99)
Q Consensus 6 ~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~ 53 (99)
++|+|+.+|++.||.+.|||||+.||.++|++|+++|++||+||.+|.
T Consensus 472 ~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~id~~i~ 519 (520)
T cd03344 472 GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVV 519 (520)
T ss_pred CEeEECCCCcccchHhccCeecHHHHHHHHHHHHHHHHHHHhhheEEe
Confidence 689999999999999999999999999999999999999999998875
No 37
>KOG0358|consensus
Probab=98.79 E-value=2.9e-09 Score=88.05 Aligned_cols=53 Identities=28% Similarity=0.433 Sum_probs=50.7
Q ss_pred CCCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhC
Q psy17079 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKN 54 (99)
Q Consensus 2 ~G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a 54 (99)
+|+.++|||+++|.+.||.++.|+.|+.|..+++++|+|.+.+||+||+|+.+
T Consensus 481 qge~~aGInVRkg~~tni~ee~VvQPllVs~SaitlA~Etvr~ILKIDDIv~a 533 (534)
T KOG0358|consen 481 QGEKNAGINVRKGGITNILEENVVQPLLVSISAITLATETVRSILKIDDIVNA 533 (534)
T ss_pred cCCcccceeeecccchhhHHHhcccceeeeHHHHHHHHHHHHHHhhhhhhccc
Confidence 58889999999999999999999999999999999999999999999999864
No 38
>KOG0364|consensus
Probab=98.76 E-value=4.4e-09 Score=87.61 Aligned_cols=58 Identities=31% Similarity=0.493 Sum_probs=52.8
Q ss_pred CCCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCCC
Q psy17079 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGG 59 (99)
Q Consensus 2 ~G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~~ 59 (99)
.|...+|||..+|.+.||.+.++|+|+.||.|.+++|.|+|+.+||||+|+..++...
T Consensus 468 ~G~~~~gi~g~tg~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRIddIvsg~kk~v 525 (527)
T KOG0364|consen 468 EGQRVWGIDGETGVIVDMVELGIWEPEAVKLQTGKTAVESACLLLRIDDIVSGKKKRV 525 (527)
T ss_pred CcceeecccCceeeEeeeeeccccchhhhhhhhhhHHHHHHHHHHhhhceeeeeeecc
Confidence 3667889999999999999999999999999999999999999999999998765543
No 39
>KOG0357|consensus
Probab=98.52 E-value=5.2e-08 Score=79.19 Aligned_cols=53 Identities=28% Similarity=0.323 Sum_probs=48.7
Q ss_pred CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCC
Q psy17079 3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNP 55 (99)
Q Consensus 3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~ 55 (99)
++.++|||+...+..||++.+|+|++..|+++|.+||+.+.|||+||+|++..
T Consensus 344 ~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~~ 396 (400)
T KOG0357|consen 344 MNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKIDDVRKPG 396 (400)
T ss_pred cCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhccceecCC
Confidence 45678999988788899999999999999999999999999999999998754
No 40
>KOG0360|consensus
Probab=98.20 E-value=7.2e-07 Score=75.02 Aligned_cols=55 Identities=35% Similarity=0.462 Sum_probs=50.4
Q ss_pred CCceeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCC
Q psy17079 3 SNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA 57 (99)
Q Consensus 3 G~~~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~ 57 (99)
+-+++|+|+.+|++.|.++.|+++|..+|...|+.|+|+|.+|||||+.|.-.|.
T Consensus 484 ~~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~l~~~ 538 (545)
T KOG0360|consen 484 LLKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIKLLPE 538 (545)
T ss_pred cchhhCccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcchhhhhhcCcc
Confidence 3468999999999999999999999999999999999999999999999975443
No 41
>KOG0359|consensus
Probab=98.00 E-value=5e-06 Score=69.58 Aligned_cols=51 Identities=24% Similarity=0.324 Sum_probs=48.0
Q ss_pred eeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCC
Q psy17079 7 YGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA 57 (99)
Q Consensus 7 ~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~ 57 (99)
.|+|+.+|+..+....||||+|.||+++|.+++-.|+.+|.+|+|+++...
T Consensus 467 ~g~dl~~g~~~~~~~~gi~Dny~v~~~~l~s~~via~nlLlvDEi~rAG~~ 517 (520)
T KOG0359|consen 467 RGLDLFRGEECDPSRKGIYDNYSVKKQLLRSEAVIATNLLLVDEIIRAGMS 517 (520)
T ss_pred cccccccCCccchhhccccchHHHHHHHhhhhHHHHHHHHHHHHHHHcccc
Confidence 599999999999999999999999999999999999999999999998643
No 42
>KOG0356|consensus
Probab=95.75 E-value=0.0055 Score=52.45 Aligned_cols=53 Identities=25% Similarity=0.367 Sum_probs=48.9
Q ss_pred eeeeeccCCccccccccCcccchHhHHHHHHHHHHHHHHHhchhhHhhCCCCC
Q psy17079 6 WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAG 58 (99)
Q Consensus 6 ~~GVdi~~G~i~Dm~e~GV~Ep~~VK~~~ik~A~EaA~~ILrID~iI~a~~~~ 58 (99)
.||.|..++++.||++.||+||..|-+.+|..|...|++++..+-+|...+..
T Consensus 488 ~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~tte~vvteipk~ 540 (550)
T KOG0356|consen 488 DYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTEIPKE 540 (550)
T ss_pred hhhhhhhcccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhhheeEEEecccc
Confidence 68999999999999999999999999999999999999999999888875543
Done!