RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17079
(99 letters)
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, eta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 522
Score = 109 bits (275), Expect = 1e-29
Identities = 38/57 (66%), Positives = 46/57 (80%)
Query: 1 MQSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA 57
WYGVDI E I+DN E+ VWEP++VK NA+TAA+EAACL+LSVDETIKNPK+
Sbjct: 466 QGGGKWYGVDINNEGIADNFEAFVWEPSLVKINALTAATEAACLILSVDETIKNPKS 522
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit. Members
of this family, all eukaryotic, are part of the group II
chaperonin complex called CCT (chaperonin containing
TCP-1) or TRiC. The archaeal equivalent group II
chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
eta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 523
Score = 91.0 bits (226), Expect = 6e-23
Identities = 37/56 (66%), Positives = 44/56 (78%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA 57
+ WYGVDI EDI DN E+ VWEPA+VK NA+ AA+EAAC +LSVDETI NPK+
Sbjct: 468 KGGKWYGVDINTEDIGDNFENFVWEPALVKINALKAATEAACTILSVDETITNPKS 523
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type
II. Chaperonins are involved in productive folding of
proteins. They share a common general morphology, a
double toroid of 2 stacked rings, each composed of 7-9
subunits. There are 2 main chaperonin groups. The
symmetry of type I is seven-fold and they are found in
eubacteria (GroEL) and in organelles of eubacterial
descent (hsp60 and RBP). The symmetry of type II is
eight- or nine-fold and they are found in archea
(thermosome), thermophilic bacteria (TF55) and in the
eukaryotic cytosol (CTT). Their common function is to
sequester nonnative proteins inside their central cavity
and promote folding by using energy derived from ATP
hydrolysis.
Length = 464
Score = 69.0 bits (170), Expect = 3e-15
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
+ G D+ +I D E+ + +P VK+ A+ +A+EAA L+L++D+ I
Sbjct: 413 EGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV 464
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. This family
includes members from the HSP60 chaperone family and the
TCP-1 (T-complex protein) family.
Length = 481
Score = 62.6 bits (153), Expect = 5e-13
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
+ G+D +I D E+ + +P VK++A+ +A E A L+L++D+ IK
Sbjct: 427 KKGNNLGIDADTGEIGDMKEAGIIDPLKVKRSALKSAVEVASLILTIDQIIK 478
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational
modification, protein turnover, chaperones].
Length = 524
Score = 59.5 bits (145), Expect = 6e-12
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 2 QSNCWYGVDITKEDISDNM-ESCVWEPAIVKKNAITAASEAACLVLSVDETIKN-PKAGG 59
+ YG+D + D+M E+ + +P VK++A+ A+EAA L+L++D+ I P+
Sbjct: 460 HATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEEKK 519
Query: 60 EGGQG 64
G
Sbjct: 520 PAPPG 524
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal.
Thermosome is the name given to the archaeal rather
than eukaryotic form of the group II chaperonin
(counterpart to the group I chaperonin, GroEL/GroES, in
bacterial), a torroidal, ATP-dependent molecular
chaperone that assists in the folding or refolding of
nascent or denatured proteins. Various homologous
subunits, one to five per archaeal genome, may be
designated alpha, beta, etc., but phylogenetic analysis
does not show distinct alpha subunit and beta subunit
lineages traceable to ancient paralogs [Protein fate,
Protein folding and stabilization].
Length = 519
Score = 57.4 bits (139), Expect = 4e-11
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 4 NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
N G+++ +I D +E V EP VK+ AI +A+EAA ++L +D+ I
Sbjct: 469 NKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVI 517
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family. Chaperonins are involved
in productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
Archaeal cpn60 (thermosome), together with TF55 from
thermophilic bacteria and the eukaryotic cytosol
chaperonin (CTT), belong to the type II group of
chaperonins. Cpn60 consists of two stacked octameric
rings, which are composed of one or two different
subunits. Their common function is to sequester
nonnative proteins inside their central cavity and
promote folding by using energy derived from ATP
hydrolysis.
Length = 517
Score = 55.7 bits (135), Expect = 1e-10
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 6 WYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
G+D+ ++ D +E V EP VKK AI +A+EAA ++L +D+ I
Sbjct: 468 NAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIA 515
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin
family, alpha subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 527
Score = 50.0 bits (120), Expect = 2e-08
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK-NP 55
+ WYG+D+ + DN+E+ V EP + K ++ A+EAA +L +D+ IK NP
Sbjct: 473 KHLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIKLNP 527
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin
family, gamma subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 480
Score = 49.6 bits (119), Expect = 2e-08
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 4 NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
N +G+D DI D E +W+P VK A EAAC++L +D+ +
Sbjct: 430 NSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIV 478
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 536
Score = 48.6 bits (116), Expect = 4e-08
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK-NPK 56
+ WYG+D++ I DN E+ V EPA+ K ++ A+EAA +L +D+ IK NP+
Sbjct: 477 KHLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLNPE 532
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
gamma chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 525
Score = 47.8 bits (114), Expect = 7e-08
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 4 NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
NC +G+D I D E +WEP VK A E+AC++L +D+ +
Sbjct: 471 NCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIV 519
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, theta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 472
Score = 46.4 bits (111), Expect = 2e-07
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 7 YGVDITKEDIS--DNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
GVDI D D E+ +++ KK AI A+EAA VL VD+ I
Sbjct: 422 AGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQII 469
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, beta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 517
Score = 45.4 bits (108), Expect = 5e-07
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
N G+D+ K + D E + E VK+ + +ASEAA ++L VD+ IK
Sbjct: 461 NGNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIK 512
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 45.1 bits (107), Expect = 7e-07
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 7 YGVDITKEDIS--DNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGG 59
G+DI E D E+ +++ KK AI A+EAA VL VD+ I AGG
Sbjct: 470 KGIDIEAESDGVKDASEAGIYDMLATKKFAIKLATEAAVTVLRVDQIIMAKPAGG 524
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional.
Length = 533
Score = 44.6 bits (106), Expect = 1e-06
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 1 MQSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKN 54
+ N G+D+ K + D E + E VK + + +A+EAA ++L VD+ I+
Sbjct: 472 YKGNKTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRC 525
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, delta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 515
Score = 39.2 bits (92), Expect = 8e-05
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
Q G+++ K I++ +E V +P +V +AIT A+E ++L +D+ +
Sbjct: 463 QGEKNAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMILKIDDIV 513
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
delta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 517
Score = 38.2 bits (89), Expect = 2e-04
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDE 50
G+ + K I++ +E V +P +V +AIT ASE +L +D+
Sbjct: 464 NGEKTAGISVRKGGITNMLEEHVLQPLLVTTSAITLASETVRSILKIDD 512
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
zeta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 34.7 bits (80), Expect = 0.004
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 8 GVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
GVD+ + D +W+ VKK I +A+ A +L VDE ++
Sbjct: 479 GVDLNTGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMR 524
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, zeta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 484
Score = 33.8 bits (78), Expect = 0.006
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 7 YGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
GVD+ + D +W+ VK+ + +A+ A +L VDE I+
Sbjct: 435 GGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIR 481
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
beta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 518
Score = 32.5 bits (74), Expect = 0.020
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 8 GVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
G+D+ + I+D + + E +K+ +++ASEAA ++L VD IK
Sbjct: 467 GLDMNEGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIK 512
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional.
Length = 546
Score = 30.4 bits (68), Expect = 0.11
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 7 YGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEGGQGMP 66
YG D + + + + +P V + AI A+ A L+++ + + G G MP
Sbjct: 477 YGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKKGGAGPAMP 536
Query: 67 MPGRGRG 73
PG G G
Sbjct: 537 -PGGGMG 542
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
epsilon chain (part of a paralogous family) from
animals, plants, fungi, and other eukaryotes.
Length = 532
Score = 30.5 bits (69), Expect = 0.11
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKN 54
+ N GVD +D E V+E I KK I A++ ++L +D+ I
Sbjct: 479 EKNPNIGVDCLGYGTNDMKEQFVFETLIGKKQQILLATQLVRMILKIDDVISP 531
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed.
Length = 544
Score = 29.7 bits (67), Expect = 0.17
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 7 YGVDITKEDISDNMESCVWEPAIVKKNAI-TAASEAACLV----LSVDETIKNPKAGGEG 61
+G + + D +E+ + +PA V + A+ AAS AA L+ + + K A
Sbjct: 476 FGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEAPKKAAAAAAGP 535
Query: 62 GQGMPMPG 69
G GM G
Sbjct: 536 GPGMGGMG 543
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed.
Length = 545
Score = 29.4 bits (66), Expect = 0.25
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 7 YGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKN-PKAGGEGGQGM 65
+G D E+ D + + +PA V + A+ A+ A L+++ + + PK + M
Sbjct: 477 FGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKK--DAAPAM 534
Query: 66 PMPGRGRG 73
P G G
Sbjct: 535 PAGGGMGG 542
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin
family, epsilon subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 526
Score = 28.4 bits (64), Expect = 0.51
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
+ N G+D +D E V+E I KK I A++ ++L +D+ I
Sbjct: 475 EKNPHLGIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV 526
>gnl|CDD|237055 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed.
Length = 425
Score = 28.0 bits (63), Expect = 0.80
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 32 KNAITAASEA--ACLVLSVDETI 52
KN IT AS+A A LV++ D+
Sbjct: 99 KNMITGASQADAAVLVVAADDAG 121
>gnl|CDD|206670 cd01883, EF1_alpha, Elongation Factor 1-alpha (EF1-alpha) protein
family. EF1 is responsible for the GTP-dependent
binding of aminoacyl-tRNAs to the ribosomes. EF1 is
composed of four subunits: the alpha chain which binds
GTP and aminoacyl-tRNAs, the gamma chain that probably
plays a role in anchoring the complex to other cellular
components and the beta and delta (or beta') chains.
This subfamily is the alpha subunit, and represents the
counterpart of bacterial EF-Tu for the archaea
(aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha
interacts with the actin of the eukaryotic cytoskeleton
and may thereby play a role in cellular transformation
and apoptosis. EF-Tu can have no such role in bacteria.
In humans, the isoform eEF1A2 is overexpressed in 2/3 of
breast cancers and has been identified as a putative
oncogene. This subfamily also includes Hbs1, a G protein
known to be important for efficient growth and protein
synthesis under conditions of limiting translation
initiation in yeast, and to associate with Dom34. It has
been speculated that yeast Hbs1 and Dom34 proteins may
function as part of a complex with a role in gene
expression.
Length = 219
Score = 27.8 bits (63), Expect = 0.81
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 32 KNAITAASEAACLVLSVDETIKNPKAGGE-GGQ 63
KN IT AS+A VL V +AG E GGQ
Sbjct: 92 KNMITGASQADVAVLVVSARKGEFEAGFEKGGQ 124
>gnl|CDD|165621 PLN00043, PLN00043, elongation factor 1-alpha; Provisional.
Length = 447
Score = 27.0 bits (59), Expect = 2.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 32 KNAITAASEAACLVLSVDETIKNPKAG 58
KN IT S+A C VL +D T +AG
Sbjct: 100 KNMITGTSQADCAVLIIDSTTGGFEAG 126
>gnl|CDD|227581 COG5256, TEF1, Translation elongation factor EF-1alpha (GTPase)
[Translation, ribosomal structure and biogenesis].
Length = 428
Score = 26.5 bits (59), Expect = 2.1
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 32 KNAITAASEAACLVLSVDETIKNPKAG-GEGGQ 63
KN IT AS+A VL VD +AG G GGQ
Sbjct: 100 KNMITGASQADVAVLVVDARDGEFEAGFGVGGQ 132
>gnl|CDD|216506 pfam01443, Viral_helicase1, Viral (Superfamily 1) RNA helicase.
Helicase activity for this family has been demonstrated
and NTPase activity. This helicase has multiple roles at
different stages of viral RNA replication, as dissected
by mutational analysis.
Length = 226
Score = 25.8 bits (57), Expect = 3.7
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 81 TCNCLWSYRAEIEAEKETG 99
T L S RA I + K
Sbjct: 123 TTYLLPSLRAPILSAKGFE 141
>gnl|CDD|218504 pfam05215, Spiralin, Spiralin. This family consists of Spiralin
proteins found in spiroplasma bacteria. Spiroplasmas are
helically shaped pathogenic bacteria related to the
mycoplasmas. The surface of spiroplasma bacteria is
crowded with the membrane-anchored lipoprotein spiralin
whose structure and function are unknown although its
cellular function is thought to be a structural and
mechanical one rather than a catalytic one.
Length = 239
Score = 25.7 bits (56), Expect = 4.5
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 10 DITKEDISD------NMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGE 60
++ K DISD +E +P V K+ + A + A L +V IKN
Sbjct: 134 EVKKVDISDVTVPEQTVEIKAADPKAVTKDELNAVNTYATLAQAVLNAIKNKAPNAG 190
>gnl|CDD|129574 TIGR00483, EF-1_alpha, translation elongation factor EF-1 alpha.
This model represents the counterpart of bacterial EF-Tu
for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1
alpha). The trusted cutoff is set fairly high so that
incomplete sequences will score between suggested and
trusted cutoff levels [Protein synthesis, Translation
factors].
Length = 426
Score = 25.2 bits (55), Expect = 6.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 32 KNAITAASEAACLVLSVD 49
KN IT AS+A VL V
Sbjct: 100 KNMITGASQADAAVLVVA 117
>gnl|CDD|237969 PRK15452, PRK15452, putative protease; Provisional.
Length = 443
Score = 25.2 bits (56), Expect = 6.4
Identities = 8/22 (36%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 80 GTCN--CLWSYRAEIEAEKETG 99
GTC C W Y+ E + G
Sbjct: 191 GTCTNACRWEYKVHEAKEDDVG 212
>gnl|CDD|226540 COG4054, McrB, Methyl coenzyme M reductase, beta subunit
[Coenzyme metabolism].
Length = 447
Score = 25.2 bits (55), Expect = 7.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 56 KAGGEGGQGMPMPGRGRGRPIVD 78
K G GG+G +PGR IV+
Sbjct: 61 KTGKVGGKGCKIPGRELDLDIVE 83
>gnl|CDD|221598 pfam12484, PE_PPE_C, Polymorphic PE/PPE proteins C terminal.
This domain family is found in bacteria, and is
approximately 90 amino acids in length. The family is
found in association with pfam00823. There is a
conserved SVP sequence motif. There is a single
completely conserved residue W that may be functionally
important. The proteins in this family are PE/PPE
proteins implicated in immunostimulation and virulence.
Length = 81
Score = 24.2 bits (53), Expect = 8.0
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 5/42 (11%)
Query: 34 AITAASEAACLVLSVDETIKNPKAGGEGG-QGMPMPGRGRGR 74
A++AA+ A L +A GMP
Sbjct: 26 AVSAAAAA----LPGAGVAAAAEAAAGAVLPGMPGAAAAGRG 63
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.131 0.414
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,805,811
Number of extensions: 377323
Number of successful extensions: 249
Number of sequences better than 10.0: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 37
Length of query: 99
Length of database: 10,937,602
Length adjustment: 65
Effective length of query: 34
Effective length of database: 8,054,592
Effective search space: 273856128
Effective search space used: 273856128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.2 bits)