RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17079
(99 letters)
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g*
Length = 550
Score = 99 bits (250), Expect = 2e-26
Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEG 61
+ WYGV E+I DN VWEPA+VK NA+ +A+EA L+LSVDETI N +
Sbjct: 474 KGEKWYGVVFETENIGDNFAKFVWEPALVKINALNSATEATNLILSVDETITNKGSESAN 533
Query: 62 GQGMP--MPGRGRGRPI 76
MP GRGRG P+
Sbjct: 534 AGMMPPQGAGRGRGMPM 550
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A
{Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1q2v_A* 1q3s_A* 1q3r_A
Length = 548
Score = 99.6 bits (249), Expect = 3e-26
Identities = 28/74 (37%), Positives = 39/74 (52%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEG 61
G+D+ + +D +E + EP VKK AI +ASEAA ++L +D+ I EG
Sbjct: 472 NRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAKATKPEG 531
Query: 62 GQGMPMPGRGRGRP 75
GQG MPG G
Sbjct: 532 GQGGGMPGGMGGMD 545
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_A*
Length = 545
Score = 96.1 bits (240), Expect = 6e-25
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK---AG 58
+ GVD+ + D V +P VK +A+ +A E A ++L +D+ I + K
Sbjct: 469 KGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIASKKSTPPS 528
Query: 59 GEGGQGMPMPGRGRG 73
G+GGQG MPG G
Sbjct: 529 GQGGQGQGMPGGGMP 543
>3aq1_B Thermosome subunit; group II chaperonin, protein folding,
chaperone; 2.75A {Methanococcoides burtonii}
Length = 500
Score = 93.4 bits (233), Expect = 4e-24
Identities = 18/68 (26%), Positives = 35/68 (51%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEG 61
+ N G+++ ++ D E+ V EP +K AI AA EA ++L +D+ + + + +G
Sbjct: 423 KGNKNAGLNVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRIDDVVASKGSANQG 482
Query: 62 GQGMPMPG 69
+P
Sbjct: 483 MGPGGLPD 490
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II
chaperonin, binding, chaperone; HET: ANP; 2.24A
{Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A*
3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A*
3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Length = 543
Score = 93.0 bits (232), Expect = 6e-24
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 1 MQSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKA--G 58
N G+++ + D E+ V EP VK AI +A+E+ ++L +D+ I K
Sbjct: 465 SNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKLRGA 524
Query: 59 GEGGQGMPMPGRGRGRP 75
+ G MPG G G P
Sbjct: 525 PDMGDMGGMPGMG-GMP 540
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_B* 1e0r_B
Length = 543
Score = 91.4 bits (228), Expect = 2e-23
Identities = 19/73 (26%), Positives = 34/73 (46%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEG 61
+ N YG+++ +I D +++ V EP V K AI +A+EAA ++L +D+ I +
Sbjct: 470 KGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIATKSSSSSS 529
Query: 62 GQGMPMPGRGRGR 74
Sbjct: 530 NPPKSGSSSESSE 542
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h*
Length = 568
Score = 91.1 bits (227), Expect = 3e-23
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 2 QSNCWYGVDI---TKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAG 58
+ + GVDI + E + D E +++ KK AI A+EAA VLS+D+ I KAG
Sbjct: 492 TDHLYKGVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSIDQIIMAKKAG 551
Query: 59 GEGGQGMPMPG 69
G P PG
Sbjct: 552 GPRAPQGPRPG 562
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone,
NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Length = 553
Score = 89.9 bits (224), Expect = 7e-23
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEG 61
++N WYG+D+ D + V EPA+VK NAI AA+EAA LVL +D+ + K G
Sbjct: 480 ENNKWYGIDLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVVSAGKKSGGE 539
Query: 62 GQGMPMPGRG 71
+ +
Sbjct: 540 SKTPGGANKP 549
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 88.3 bits (220), Expect = 3e-22
Identities = 39/55 (70%), Positives = 47/55 (85%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK 56
Q WYGVDI EDI+DN E+ VWEPA+V+ NA+TAASEAACL++SVDETIKNP+
Sbjct: 461 QGGMWYGVDINTEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPR 515
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a*
Length = 559
Score = 87.3 bits (217), Expect = 8e-22
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK-NPKAGGE 60
+S YG+D+ + I D + + V EP I K ++ +A EA +L +D I +P+ E
Sbjct: 495 RSYRNYGLDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAILRIDTMITVDPEPPKE 554
Query: 61 GGQG 64
Sbjct: 555 DPHD 558
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f*
Length = 546
Score = 86.5 bits (215), Expect = 1e-21
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEG 61
+ GVD+ D D +W+ V +NAIT A+ A +L DE ++ ++ +
Sbjct: 484 DETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELLRAGRSTLKE 543
Query: 62 G 62
Sbjct: 544 T 544
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 84.9 bits (211), Expect = 5e-21
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 4 NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK 56
+GV+ + D E +WEP VK A E A L+L +D+ + K
Sbjct: 463 CETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHK 515
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b*
Length = 527
Score = 84.5 bits (210), Expect = 6e-21
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGEG 61
G+D+ I+D + + E +K+ +++ASEAA ++L VD I+
Sbjct: 465 NGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANR 524
Query: 62 GQ 63
Sbjct: 525 QH 526
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Length = 513
Score = 84.1 bits (209), Expect = 8e-21
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK-NPK 56
+ G+D+ + I D + E VK+ + +A+EAA ++L VD IK P+
Sbjct: 458 EGKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPR 513
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e*
Length = 562
Score = 83.4 bits (207), Expect = 1e-20
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 4 NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK 56
GVD +D E V +P I KK I A++ ++L +D I + K
Sbjct: 507 ISNIGVDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVIISGK 559
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 518
Score = 82.6 bits (205), Expect = 3e-20
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKN 54
Q G+++ K IS+ +E V +P +V +A+T A+E +L +D+ +
Sbjct: 465 QGEKTTGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVNT 517
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 529
Score = 81.1 bits (201), Expect = 1e-19
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNP 55
++ W G+D+ DN ++ V+EP IVK ++ A+EAA +L +D+ IK
Sbjct: 475 KNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLH 528
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d*
Length = 528
Score = 81.0 bits (201), Expect = 1e-19
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
G+ + + ++ E + +P +V +AIT ASE +L +D+
Sbjct: 475 NGELNDGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDIAF 526
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B
2bbn_B
Length = 590
Score = 80.5 bits (199), Expect = 2e-19
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPK 56
Q N G+D K I D + +WEP ++K+ ++ A E+ACL+L VD+ + +
Sbjct: 533 QGNFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLLLRVDDIVSGVR 587
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 517
Score = 80.3 bits (199), Expect = 2e-19
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 2 QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
+S GVD+ + E+ +W+ VKK + + + A +L VDE ++
Sbjct: 464 ESGQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMR 515
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit
arrangement, acetylation, ATP-binding, chaperone,
cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Length = 515
Score = 79.9 bits (198), Expect = 3e-19
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 4 NCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIK 53
N G+D + +D V E I KK I+ A++ ++L +D+ K
Sbjct: 464 NPALGIDCLHKGTNDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIRK 513
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 512
Score = 74.1 bits (183), Expect = 3e-17
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 2 QSNCWYGVDITKE--DISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
+ N G+DI E + D +E+ V + + K AI A+ AA VL VD+ I
Sbjct: 457 EGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQII 509
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.13
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 26/66 (39%)
Query: 14 EDISDNMESCVWE-------------PAIVKKNAITAASEAACLVLSVDETIKNPK---A 57
++I+++ S + PA+ +AA L + + A
Sbjct: 1708 KEINEHSTSYTFRSEKGLLSATQFTQPALT------LMEKAAFEDLK-SKGLIPADATFA 1760
Query: 58 G---GE 60
G GE
Sbjct: 1761 GHSLGE 1766
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit;
translation termination, peptide release, GTPase,
translatio; 2.35A {Schizosaccharomyces pombe} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Length = 467
Score = 28.1 bits (63), Expect = 0.50
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 32 KNAITAASEAACLVLSVDETIKNPKAG-GEGGQ 63
N I AS+A VL + +AG GGQ
Sbjct: 136 TNMINGASQADIGVLVISARRGEFEAGFERGGQ 168
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase,
alpha/beta structure, protein biosynthesis, translation;
HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Length = 435
Score = 27.6 bits (62), Expect = 0.54
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 32 KNAITAASEAACLVLSVDETIKNPKAG-GEGGQ 63
KN IT AS+A +L V +AG GQ
Sbjct: 99 KNMITGASQADAAILVVSAKKGEYEAGMSVEGQ 131
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain,
beta-barrel, translational GTPase, D structural
genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Length = 483
Score = 27.6 bits (62), Expect = 0.58
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 32 KNAITAASEAACLVLSVDETIKNPKAGGE-GGQ 63
NAI S+A +L VD + ++G + GQ
Sbjct: 126 PNAIMGISQADMAILCVDCSTNAFESGFDLDGQ 158
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 27.4 bits (61), Expect = 0.74
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 32 KNAITAASEAACLVLSVDETIKNPKAGGE-GGQ 63
NAI S+A +L VD + ++G + GQ
Sbjct: 260 PNAIMGISQADMAILCVDCSTNAFESGFDLDGQ 292
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 27.0 bits (60), Expect = 0.99
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 32 KNAITAASEAACLVLSVDETIKNPKAGGE-GGQ 63
I AS A VL VD + N + G GQ
Sbjct: 270 SGMIAGASSADFAVLVVDSSQNNFERGFLENGQ 302
>1e6y_B Methyl-coenzyme M reductase I beta subunit; biological
methanogenesis, NI-enzyme, oxidoreductase, NI ENZ; HET:
MHS AGM F43 TP7; 1.6A {Methanosarcina barkeri} SCOP:
a.89.1.1 d.58.31.2
Length = 433
Score = 25.7 bits (56), Expect = 2.7
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 56 KAGGEGGQGMPMPGRGRGRPIVDK 79
+G GG+G + GRG IV
Sbjct: 54 ASGKMGGKGRQILGRGLNYDIVGN 77
>1hbn_B Methyl-coenzyme M reductase I beta subunit; methanogenesis,
biological methanogenesis, NI-enzyme, oxidoreductase;
HET: MHS AGM MGN F43 TP7; 1.16A
{Methanothermobacterthermautotrophicus} SCOP: a.89.1.1
d.58.31.2 PDB: 1hbm_B* 1hbo_B* 1hbu_B* 1mro_B* 3m1v_B*
3m2r_B* 3m2u_B* 3m2v_B* 3m30_B* 3m32_B* 3pot_B* 1e6v_B*
Length = 442
Score = 25.7 bits (56), Expect = 2.7
Identities = 7/24 (29%), Positives = 8/24 (33%)
Query: 56 KAGGEGGQGMPMPGRGRGRPIVDK 79
K GG + GR IV
Sbjct: 57 KTAKVGGPACKIMGRELDLDIVGN 80
>3sqg_B Methyl-coenzyme M reductase, beta subunit; anaerobic methane
oxidation, transferase; HET: MHS 0AF TP7 M43 1PE PGE
P6G; 2.10A {Uncultured archaeon}
Length = 433
Score = 25.7 bits (56), Expect = 2.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 56 KAGGEGGQGMPMPGRGRGRPIVDK 79
G G+GM + G R PIVDK
Sbjct: 55 ATGAIAGRGMVIRGVNRNLPIVDK 78
>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_7
Length = 162
Score = 24.2 bits (52), Expect = 8.5
Identities = 2/21 (9%), Positives = 4/21 (19%)
Query: 55 PKAGGEGGQGMPMPGRGRGRP 75
+G +G
Sbjct: 138 EGEEAAKEEGAAETAQGNQET 158
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.131 0.414
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,508,627
Number of extensions: 76459
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 46
Length of query: 99
Length of database: 6,701,793
Length adjustment: 65
Effective length of query: 34
Effective length of database: 4,886,928
Effective search space: 166155552
Effective search space used: 166155552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.7 bits)