RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17079
         (99 letters)



>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain
           {Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
           2303]}
          Length = 245

 Score = 64.0 bits (155), Expect = 2e-14
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 1   MQSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
            +     GVD+    + D     V +P  VK +A+ +A E A ++L +D+ I
Sbjct: 194 EKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVI 245


>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain
           {Archaeon Thermoplasma acidophilum, beta chain [TaxId:
           2303]}
          Length = 243

 Score = 62.0 bits (150), Expect = 9e-14
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 2   QSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
           + N  YG+++   +I D +++ V EP  V K AI +A+EAA ++L +D+ I
Sbjct: 192 KGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVI 242


>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain
           {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
           79679]}
          Length = 258

 Score = 54.4 bits (130), Expect = 7e-11
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 1   MQSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETI 52
                  G+D+ +   +D +E  + EP  VKK AI +ASEAA ++L +D+ I
Sbjct: 203 KNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVI 254


>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus
           thermophilus [TaxId: 274]}
          Length = 255

 Score = 44.9 bits (105), Expect = 2e-07
 Identities = 12/54 (22%), Positives = 26/54 (48%)

Query: 1   MQSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKN 54
              N  YG +    +  D +E+ + +PA V ++A+  A+    L+L+ +  +  
Sbjct: 200 ETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAE 253


>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain
           {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
          Length = 180

 Score = 43.2 bits (101), Expect = 6e-07
 Identities = 10/49 (20%), Positives = 22/49 (44%)

Query: 1   MQSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVD 49
                 +G++       D + + V +P  V ++A+  A+  A L L+ +
Sbjct: 132 RNLPAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTE 180


>d1hbnb2 d.58.31.2 (B:2-188) Beta chain {Archaeon Methanobacterium
          thermoautotrophicum [TaxId: 145262]}
          Length = 187

 Score = 26.6 bits (59), Expect = 0.40
 Identities = 7/24 (29%), Positives = 8/24 (33%)

Query: 56 KAGGEGGQGMPMPGRGRGRPIVDK 79
          K    GG    + GR     IV  
Sbjct: 57 KTAKVGGPACKIMGRELDLDIVGN 80


>d1e6vb2 d.58.31.2 (B:7-189) Beta chain {Archaeon Methanopyrus
          kandleri [TaxId: 2320]}
          Length = 183

 Score = 26.6 bits (59), Expect = 0.42
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 56 KAGGEGGQGMPMPGRGRGRPIVDK 79
          +    GG+GM +PGR     IVD 
Sbjct: 53 QNATVGGKGMKIPGREMDVDIVDN 76


>d1e6yb2 d.58.31.2 (B:2002-2185) Beta chain {Archaeon
          Methanosarcina barkeri [TaxId: 2208]}
          Length = 184

 Score = 26.6 bits (59), Expect = 0.48
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 56 KAGGEGGQGMPMPGRGRGRPIVDK 79
           +G  GG+G  + GRG    IV  
Sbjct: 54 ASGKMGGKGRQILGRGLNYDIVGN 77


>d2a6sa1 d.298.1.1 (A:1-83) Toxin YoeB {Escherichia coli [TaxId:
          562]}
          Length = 83

 Score = 24.0 bits (52), Expect = 2.5
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 67 MPGRGRGRPIVDKGTCNCLWSYRAEIE 93
           P  G+G+P   K   +  WS R   E
Sbjct: 37 TPFEGKGKPEPLKHNLSGFWSRRITEE 63


>d2baaa_ d.2.1.1 (A:) Plant class II chitinase {Barley (Hordeum
           vulgare) [TaxId: 4513]}
          Length = 243

 Score = 23.4 bits (50), Expect = 6.2
 Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 7/66 (10%)

Query: 1   MQSNCWYGVDITKEDISDNMESCVWEPAIVKKNAITAASEAACLVLSVDETIKNPKAGGE 60
            ++  W+ +       S +         I  + + + A  AA  V            G E
Sbjct: 151 FKTAIWFWMTAQPPKPSSHA-------VIAGQWSPSGADRAAGRVPGFGVITNIINGGIE 203

Query: 61  GGQGMP 66
            G G  
Sbjct: 204 CGHGQD 209


>d1fuia1 b.43.2.1 (A:356-591) L-fucose isomerase, C-terminal
          domain {Escherichia coli [TaxId: 562]}
          Length = 236

 Score = 23.2 bits (50), Expect = 6.5
 Identities = 5/21 (23%), Positives = 12/21 (57%)

Query: 10 DITKEDISDNMESCVWEPAIV 30
          +I++++    + +  W PAI 
Sbjct: 63 EISQQEADACLAATEWCPAIH 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.131    0.414 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 375,850
Number of extensions: 14289
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 13
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.1 bits)