Query psy17080
Match_columns 565
No_of_seqs 595 out of 3082
Neff 10.2
Searched_HMMs 29240
Date Fri Aug 16 21:21:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 5.7E-40 2E-44 343.8 38.8 384 153-546 53-483 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 5E-32 1.7E-36 280.2 33.1 355 153-526 60-435 (451)
3 3o7q_A L-fucose-proton symport 100.0 2.4E-30 8.2E-35 266.5 30.7 342 140-524 49-432 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 1.1E-27 3.6E-32 250.6 27.3 383 144-529 46-477 (491)
5 2gfp_A EMRD, multidrug resista 100.0 3.2E-28 1.1E-32 245.3 15.4 325 140-509 23-361 (375)
6 2cfq_A Lactose permease; trans 99.9 4.7E-26 1.6E-30 232.7 15.7 353 143-529 34-405 (417)
7 2xut_A Proton/peptide symporte 99.9 1.4E-23 4.9E-28 221.1 21.7 137 153-289 52-196 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.2 1.5E-10 5.1E-15 118.8 17.5 142 387-529 63-212 (451)
9 3o7q_A L-fucose-proton symport 99.2 1.3E-09 4.5E-14 111.2 19.5 136 388-524 63-229 (438)
10 4aps_A DI-OR tripeptide H+ sym 99.1 6.2E-09 2.1E-13 108.1 20.3 133 389-522 57-194 (491)
11 2gfp_A EMRD, multidrug resista 99.0 1.2E-09 4E-14 109.2 13.0 151 378-529 24-180 (375)
12 2cfq_A Lactose permease; trans 99.0 9E-10 3.1E-14 111.9 9.8 142 154-295 258-404 (417)
13 4gc0_A D-xylose-proton symport 99.0 1.7E-08 5.8E-13 104.7 18.3 137 393-529 62-225 (491)
14 2xut_A Proton/peptide symporte 98.9 1.6E-08 5.6E-13 105.8 17.8 136 388-524 56-198 (524)
15 3hd6_A Ammonium transporter RH 37.4 3.2E+02 0.011 27.2 17.0 11 59-69 28-38 (490)
16 2g9p_A Antimicrobial peptide l 36.1 7.5 0.00026 19.9 -0.0 14 174-187 2-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=5.7e-40 Score=343.84 Aligned_cols=384 Identities=21% Similarity=0.332 Sum_probs=279.0
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHH------------------hcchhHHHHHH
Q psy17080 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVA------------------ISPWFELYLVV 214 (565)
Q Consensus 153 ~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~------------------~~~~~~~l~~~ 214 (565)
+..+.|++.+++.+|.++|++++|+++||+|||++++++.+++.+++++++ +++|+++++++
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 456679999999999999999999999999999999999999999999998 47899999999
Q ss_pred HHHHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh-----------cchhHHHHHHHHHHHH
Q psy17080 215 RFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS-----------HNWRLLQWVITIPTIF 283 (565)
Q Consensus 215 r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~-----------~~Wr~~~~~~~~~~~~ 283 (565)
|+++|++.|+..+...+++.|+.|+++|++..++.+.+..+|.++++.++... ..||+.+.+..++.++
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL 212 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999988877653 2588888888888888
Q ss_pred HHHHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHH
Q psy17080 284 FLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQ 363 (565)
Q Consensus 284 ~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 363 (565)
.++..+++||||||+..+++.+++++.+++....+..+.. ..+.. +.....++.......++.+.........
T Consensus 213 ~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (491)
T 4gc0_A 213 FLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQA------VQEIK-HSLDHGRKTGGRLLMFGVGVIVIGVMLS 285 (491)
T ss_dssp HHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHH------HHHHH-HHHHHHHHHTTHHHHSCCTHHHHHHHHH
T ss_pred hhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHH------HHHHH-HHHHhhhhhhhHHHHhcccHHHHHHHHH
Confidence 8888899999999999999999999999887654321100 00000 0000111111223334444443333333
Q ss_pred HHHHH--HHHHhhhhhhhccCcCCC---cHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhc--
Q psy17080 364 YIIWF--SVYLVYYGLVLNLSNIGG---DVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGF-- 436 (565)
Q Consensus 364 ~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~-- 436 (565)
.+..+ .....+|...+ ....+. +......+.++..+++.++++++.||+|||+.++.+....+++++.+...
T Consensus 286 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~ 364 (491)
T 4gc0_A 286 IFQQFVGINVVLYYAPEV-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY 364 (491)
T ss_dssp HHHHHTCHHHHHHHHHHH-HHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHhcchHH-HHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh
Confidence 33222 12223333222 222222 23445566778889999999999999999999998888877776655421
Q ss_pred C-CchHHHHHHHHHHHHHHHH-HHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH--------HHHhhhhhH
Q psy17080 437 A-PGSFITISLAMVGKFAISS-SNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWH--------MQSINIHFP 506 (565)
Q Consensus 437 ~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~--------~~~~~~~~~ 506 (565)
. ...+...+..++...+.+. ..++.+++.+|++|++.|+++.|+.+..++++++++|.+.. ....+....
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~ 444 (491)
T 4gc0_A 365 TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFS 444 (491)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHH
T ss_pred cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 1 1223323333332223222 23677899999999999999999999999999888876621 123345567
Q ss_pred HHHHHHHHHHHHHH-HhhcccCCCCCccHHHhhhcCCCCCC
Q psy17080 507 MGLLGVVGVLGGLS-VLLLPDTTGLADNLHQLENDVPIQTP 546 (565)
Q Consensus 507 ~~~~~~~~~i~~~~-~~~l~et~~~~~~~~~~~~~~~~~~~ 546 (565)
+++++++++++.++ ++++||||+ +++||+|+..+++++
T Consensus 445 ~~i~~~~~~~~~i~~~~~~PETkg--~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 445 YWIYGCMGVLAALFMWKFVPETKG--KTLEELEALWEPETK 483 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCTT--CCHHHHGGGTC----
T ss_pred HHHHHHHHHHHHHHHHheecCCCC--CCHHHHHHHhCCCCc
Confidence 88888888887765 478999999 899999988776543
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=5e-32 Score=280.19 Aligned_cols=355 Identities=12% Similarity=0.089 Sum_probs=267.0
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHHhhhhhhhHhh
Q psy17080 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAI----SPWFELYLVVRFFLGFFCVSIVFS 228 (565)
Q Consensus 153 ~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~ 228 (565)
+..+.|++.+++.++..++++++|+++||+|||++++.+.++.+++.+++++ +++++.++++|++.|++.+...+.
T Consensus 60 s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~ 139 (451)
T 1pw4_A 60 SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPP 139 (451)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccch
Confidence 6667899999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHh---cc-hhHHHHHHHHHHHHHHH-HhhhcccchhHHHhcCC
Q psy17080 229 GFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYS---HN-WRLLQWVITIPTIFFLT-LWWIMPESPRWLVSMGR 303 (565)
Q Consensus 229 ~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~~-Wr~~~~~~~~~~~~~~~-~~~~~pesp~~l~~~~~ 303 (565)
..+++.|++|+++|+++.++...+..+|.++++.++..+ .+ ||+.|++.+++.++..+ .++++||+|++...+.+
T Consensus 140 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (451)
T 1pw4_A 140 CGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI 219 (451)
T ss_dssp HHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC
T ss_pred HHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh
Confidence 999999999999999999999999999999999888653 46 99999998887666544 45778998864321111
Q ss_pred HHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhhhhhhccCc
Q psy17080 304 NKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSN 383 (565)
Q Consensus 304 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (565)
.+. +...+. + ...++++....++...++++++|.++...+..++..+.........+.+..+
T Consensus 220 ~~~--------------~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (451)
T 1pw4_A 220 EEY--------------KNDYPD-D---YNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKE 281 (451)
T ss_dssp TTT--------------CCC-----------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTT
T ss_pred hhh--------------cccccc-c---chhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000000 0 0000000111111124678889988887777666665544444444444443
Q ss_pred -CCCcH---HHHHHHHHHHHHHHHHHHHHHHhhc--CChHHHHHHHHHHH-HHHHHHhhcCC--chHHHHHHHHHHHHHH
Q psy17080 384 -IGGDV---YLNTIISGIVEFPAIVISIFILLKM--GRRRPLCLTTLGAG-LACLMTLGFAP--GSFITISLAMVGKFAI 454 (565)
Q Consensus 384 -~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~--grr~~l~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 454 (565)
.+.+. .......+++.+++.++.+++.||+ +||+.+..+..+.. ++++++. +.+ +.+...+..++.+++.
T Consensus 282 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~ 360 (451)
T 1pw4_A 282 VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW-MNPAGNPTVDMICMIVIGFLI 360 (451)
T ss_dssp BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT-SCCTTCHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH-HhcccCHHHHHHHHHHHHHHH
Confidence 55544 3445566778889999999999999 99998888777766 5555554 443 3355555666677777
Q ss_pred HHHHHHHHHhcccccchhhhhhHHHHHHHHHHH-HHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhhccc
Q psy17080 455 SSSNVIIPIYTAELFPTKMRNLGVGASSVPAGV-ALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLLLPD 526 (565)
Q Consensus 455 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l-g~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~e 526 (565)
+...+....+..|.+|++.|+++.|+.+....+ |..++|.+ ...+..++...+++.+++.+++.++.+++++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 361 YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp THHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777788889999999999999999999999999 99999988 3455667888888888888888777665543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.98 E-value=2.4e-30 Score=266.53 Aligned_cols=342 Identities=12% Similarity=0.001 Sum_probs=260.5
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHH---HhcchhHHHHHHHH
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLV---AISPWFELYLVVRF 216 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~---~~~~~~~~l~~~r~ 216 (565)
.|.+.+++++ +..+.|++.+++.+++.++++++|+++||+|||++++.+.++.+++.+++ +++++++.+++.|+
T Consensus 49 ~~~~~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (438)
T 3o7q_A 49 LPQFQQAFTL---TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLF 125 (438)
T ss_dssp HHHHHHHSCC---CSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 5678889999 88999999999999999999999999999999999999999999999999 88999999999999
Q ss_pred HHhhhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHhc-----c----------------------
Q psy17080 217 FLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSH-----N---------------------- 269 (565)
Q Consensus 217 l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~-----~---------------------- 269 (565)
+.|++.+...+...+++.|++|+++|+++.++.+.+..+|.++++.++..+. .
T Consensus 126 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (438)
T 3o7q_A 126 IIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLV 205 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999998876542 2
Q ss_pred --hhHHHHHHHHHHHHHHHHhhh--cccchhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCccc
Q psy17080 270 --WRLLQWVITIPTIFFLTLWWI--MPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKV 345 (565)
Q Consensus 270 --Wr~~~~~~~~~~~~~~~~~~~--~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (565)
||+.|++.++..++..+..++ .||+++.. ++++++++.+.
T Consensus 206 ~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------------------------------------~~~~~~~~~~~ 249 (438)
T 3o7q_A 206 LSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN------------------------------------HSDAKQGSFSA 249 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC------------------------------------CCCSSTTSHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc------------------------------------cccccccchhh
Confidence 999998877666555544433 45553210 00011112233
Q ss_pred chhhccccHHHHHHHHHHHHHHHHHHHhhhhhhhc-cC-cCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHH
Q psy17080 346 QVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLN-LS-NIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLC 420 (565)
Q Consensus 346 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~ 420 (565)
++++++|+|.++...+..++............+.+ .+ .++.+. .....+..++.+++.++.+++.||+|||+.+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~ 329 (438)
T 3o7q_A 250 SLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLA 329 (438)
T ss_dssp HHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 56778899988887777665555443332222322 32 224443 34455567788899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHH
Q psy17080 421 LTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHM 498 (565)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~ 498 (565)
.+.++.+++++++. +.++.+. ....++.+++.+..++..+.+..|.+|++ ++.+.++.. .+.+|+.++|.+ ...
T Consensus 330 ~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~ 405 (438)
T 3o7q_A 330 AYALIAMALCLISA-FAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVS 405 (438)
T ss_dssp HHHHHHHHHHHHHH-HCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHH
Confidence 98888887777666 5554443 33446667778888899999999999977 888888877 677999999998 345
Q ss_pred HHhh-hhhHHHHHHHHHHHHHHHHhhc
Q psy17080 499 QSIN-IHFPMGLLGVVGVLGGLSVLLL 524 (565)
Q Consensus 499 ~~~~-~~~~~~~~~~~~~i~~~~~~~l 524 (565)
+..+ +...+.+.+++.++..+..+..
T Consensus 406 ~~~g~~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T 3o7q_A 406 DAAGNIPTAELIPALCFAVIFIFARFR 432 (438)
T ss_dssp HHHTSSGGGGHHHHHHHHHHHHHHTTC
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 6666 7777777665555444433333
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=1.1e-27 Score=250.61 Aligned_cols=383 Identities=11% Similarity=0.027 Sum_probs=243.7
Q ss_pred eeccccccCcchhhHHHHHHHHHHHhhhhhhhhccccc-ccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhh
Q psy17080 144 ISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDK-FGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFC 222 (565)
Q Consensus 144 ~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr-~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 222 (565)
.+|+++ +..+.+++.+++.++..+++++.|+++|| +|||++++.+.++.+++.++++++++++.+++.|++.|++.
T Consensus 46 ~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 122 (491)
T 4aps_A 46 TGDLHI---TRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGT 122 (491)
T ss_dssp HTSCCS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHH
T ss_pred hhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 445788 88899999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred hhhHhhhhhhhccccccch--hHHHHHHhhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhhhc-ccch-
Q psy17080 223 VSIVFSGFVLCMELVGGKW--LTIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWWIM-PESP- 295 (565)
Q Consensus 223 ~~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~~~-pesp- 295 (565)
+...+...+++.|++|+++ |+.+.++.+.+..+|.++++.++..+ .+||+.|++.++..++.++..++. |+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 123 GFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp HHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 9999999999999999988 77788888899999999999888765 589999999877666555444332 2210
Q ss_pred ---hHHHhcCCHHHHHHHHHH--------------HHHHcCCCCchhHHHHHH-----HHhhhhccccCcccchhhcccc
Q psy17080 296 ---RWLVSMGRNKEAMKILGD--------------AAKFNSRKLPLNLEKLLK-----ESVLSTNQDVGKKVQVMDLWRT 353 (565)
Q Consensus 296 ---~~l~~~~~~~~a~~~l~~--------------~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~ 353 (565)
+....+.+.++.++..++ ....++.+.++....... .........++......+..+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (491)
T 4aps_A 203 PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRV 282 (491)
T ss_dssp SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------C
T ss_pred ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 000111233333333322 111222222111100000 0000000000001111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccCc-CC---CcHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHH-----HHHH
Q psy17080 354 PLIRLISFVQYIIWFSVYLVYYGLVLNLSN-IG---GDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLC-----LTTL 424 (565)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~-----~~~~ 424 (565)
.......+...+.+..........+.+..+ .+ ..........++..+++.++.+++.||++||+... .+.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLM 362 (491)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 222223333333333322222222221111 11 22334445566777788889999999999986544 5566
Q ss_pred HHHHHHHHHhhcC--------CchHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH-
Q psy17080 425 GAGLACLMTLGFA--------PGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL- 495 (565)
Q Consensus 425 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i- 495 (565)
+.+++++++.... .+.+......++.+++.+...+..+.++.|.+|++.|+++.|+.++...+|.+++|.+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~ 442 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLV 442 (491)
T ss_dssp HHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555544211 1234555566667777777778889999999999999999999999999999999998
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhh-cccCCC
Q psy17080 496 WHMQSINIHFPMGLLGVVGVLGGLSVLL-LPDTTG 529 (565)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~-l~et~~ 529 (565)
....+.++...+.+++++.+++.++.++ .++.++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 443 TLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp GGGGGSSTTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456666788888777777665544 444443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.95 E-value=3.2e-28 Score=245.29 Aligned_cols=325 Identities=10% Similarity=0.005 Sum_probs=238.6
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Q psy17080 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219 (565)
Q Consensus 140 ~~~i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 219 (565)
.+.+.+++++ +..+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.++.+++++++.+++.|++.|
T Consensus 23 ~~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g 99 (375)
T 2gfp_A 23 IADMARDLNV---REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQG 99 (375)
T ss_dssp HHHHHTTSSS---TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4667788998 8889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhhhccccccchhHHHHHHhhhhhHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHH-Hhhhcccch
Q psy17080 220 FFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSH---NWRLLQWVITIPTIFFLT-LWWIMPESP 295 (565)
Q Consensus 220 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~---~Wr~~~~~~~~~~~~~~~-~~~~~pesp 295 (565)
++.+...+...+++.|++|+++|+++.++.+.+..+|.++++.++..+. +||+.+++.++..++..+ ..+++||+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 100 MGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 9999999999999999999999999999999999999999999988763 799999988887766655 456788875
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhhh
Q psy17080 296 RWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYY 375 (565)
Q Consensus 296 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (565)
++. +++++.+.++++++|+|.++...+...+.+........
T Consensus 180 ~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (375)
T 2gfp_A 180 PVD---------------------------------------APRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEA 220 (375)
T ss_dssp TTT---------------------------------------CCCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC---------------------------------------cccccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHH
Confidence 420 00111234567788888888777766655554444433
Q ss_pred hhhhccCc-CCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHH-HHHHHHHHhh-cC--CchHHHHHHH
Q psy17080 376 GLVLNLSN-IGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLG-AGLACLMTLG-FA--PGSFITISLA 447 (565)
Q Consensus 376 ~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~-~~~~~~~~~~-~~--~~~~~~~~~~ 447 (565)
..+.+..+ .+.+. .......+++.+++.++.+++.||.+++ +..+... ...+...+.. .. .+.+...+..
T Consensus 221 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (375)
T 2gfp_A 221 CSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPA 298 (375)
T ss_dssp HCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHH
Confidence 33433333 33332 2333344555666666677777776652 2222222 1111111110 10 1224444556
Q ss_pred HHHHHHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHH
Q psy17080 448 MVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGL 509 (565)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~ 509 (565)
++.+++.+...+....+..|..| +.|+++.|+.+....+|..++|.+ ...+..++...+.+
T Consensus 299 ~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 299 ALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 66778888888888999999999 789999999999999999999888 33344444444433
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.93 E-value=4.7e-26 Score=232.74 Aligned_cols=353 Identities=14% Similarity=0.085 Sum_probs=221.9
Q ss_pred eeeccccccCcchhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHH---HHHhcchh-HHHHHHHHHH
Q psy17080 143 IISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGV---LVAISPWF-ELYLVVRFFL 218 (565)
Q Consensus 143 i~~~~~l~c~~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~---~~~~~~~~-~~l~~~r~l~ 218 (565)
+.+++++ +..+.|++.+.+.++..++++++|+++||+|||++++.+..+.+++.. ...+++.. ..++..+++.
T Consensus 34 l~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (417)
T 2cfq_A 34 LHDINHI---SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVG 110 (417)
T ss_dssp HHTTTCC---CTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGG
T ss_pred HHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788 778899999999999999999999999999999999998887655322 11222221 1234566676
Q ss_pred hhhhhhhHhhhhhhhcccccc--chhHHHHHHhhhhhHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHHHhhhcccc
Q psy17080 219 GFFCVSIVFSGFVLCMELVGG--KWLTIMGVMYLFPVPVGYIAISGIAYYS--HNWRLLQWVITIPTIFFLTLWWIMPES 294 (565)
Q Consensus 219 G~~~~~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~lG~~~~~~l~~~~--~~Wr~~~~~~~~~~~~~~~~~~~~pes 294 (565)
|++.+...+.....+.++.++ ++|+...+....+..+|..+++.++..+ .+||+.|++.+++.++..+..++.||+
T Consensus 111 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 190 (417)
T 2cfq_A 111 GIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTD 190 (417)
T ss_dssp GSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCcc
Confidence 766655555544555555543 3456556666666777777777766554 379999988776655555554444443
Q ss_pred hhHHHhcCCHHHHHHHHHHHHHHcCCCCchhHHHHHHHHhhhhccccCcccchhhccccHHHHHHHHHHHHHHHHHHHhh
Q psy17080 295 PRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVY 374 (565)
Q Consensus 295 p~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 374 (565)
|+. +.+.++ +. +++.++....++++++|+|.++...+..+..........
T Consensus 191 ~~~---~~~~~~------------~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (417)
T 2cfq_A 191 APS---SATVAN------------AV---------------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFD 240 (417)
T ss_dssp CSC---SSCSSS------------SS---------------SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc---cccccc------------cc---------------ccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHH
Confidence 210 000000 00 000001111234567888887765554333222211110
Q ss_pred hhhhhccC-cCC-----C-cHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHH
Q psy17080 375 YGLVLNLS-NIG-----G-DVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLA 447 (565)
Q Consensus 375 ~~~~~~~~-~~~-----~-~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (565)
...+.+.. .++ . .......+..+.++++.++.+++.||+|||+.+..+..+.++..+++. +.++.+...+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 319 (417)
T 2cfq_A 241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS-FATSALEVVILK 319 (417)
T ss_dssp HHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT-TCCSHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHH
Confidence 01111111 111 1 112334455567788899999999999999998888877777666655 445544444444
Q ss_pred HHHHHHHHHHHHHHHHhcccccchhhhhhHHHHH-HHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHH-hh
Q psy17080 448 MVGKFAISSSNVIIPIYTAELFPTKMRNLGVGAS-SVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSV-LL 523 (565)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~-~~ 523 (565)
++.+++.+...+..+.++.|.+|++.|+++.|+. +....+|++++|.+ ...+..++...|.+.+++.+++.++. +.
T Consensus 320 ~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 320 TLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555555666788999999999999999985 78888999999988 33455677778888888888777665 44
Q ss_pred cccCCC
Q psy17080 524 LPDTTG 529 (565)
Q Consensus 524 l~et~~ 529 (565)
.||+++
T Consensus 400 ~~~~~~ 405 (417)
T 2cfq_A 400 LSGPGP 405 (417)
T ss_dssp SCCSCT
T ss_pred hcCCCc
Confidence 566554
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.91 E-value=1.4e-23 Score=221.15 Aligned_cols=137 Identities=12% Similarity=0.120 Sum_probs=123.1
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhcccccc-cchhhHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHhhhhhhhHhhhh
Q psy17080 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKF-GRKKALMGSLVFQLVLGVLVAISP-WFELYLVVRFFLGFFCVSIVFSGF 230 (565)
Q Consensus 153 ~~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~-Grr~~l~~~~~l~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~ 230 (565)
+..+.+++.+++.++..+++++.|+++||+ |||+++..+.++.+++.+++++++ +++.+++.|++.|++.+...+...
T Consensus 52 s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 131 (524)
T 2xut_A 52 RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVS 131 (524)
T ss_dssp TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHH
Confidence 778899999999999999999999999999 999999999999999999999999 999999999999999999999999
Q ss_pred hhhccccccchhHHHHHH---hhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHhh
Q psy17080 231 VLCMELVGGKWLTIMGVM---YLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTLWW 289 (565)
Q Consensus 231 ~~i~e~~~~~~r~~~~~~---~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~~~ 289 (565)
+++.|++|+++|+++.+. ...+..+|.++++.++..+ .+||+.|++.++..++..+..+
T Consensus 132 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 132 SFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999876666 8888899999998877654 4899999988877666555443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.24 E-value=1.5e-10 Score=118.79 Aligned_cols=142 Identities=15% Similarity=0.012 Sum_probs=118.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhc----CCchHHHHHHHHHHHHHHHHHHHHHH
Q psy17080 387 DVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGF----APGSFITISLAMVGKFAISSSNVIIP 462 (565)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (565)
+.........++..++.++.|++.||+|||+++.++.++.+++.++.. + .++.+..++..++.+++.+...+...
T Consensus 63 ~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~ 141 (451)
T 1pw4_A 63 DLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG-FVPWATSSIAVMFVLLFLCGWFQGMGWPPCG 141 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-HCHHHHSSSSHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHH-hhhhccccHHHHHHHHHHHHHHhhhccchHH
Confidence 345666677788889999999999999999999999999998888887 5 55666777778888999998899999
Q ss_pred HhcccccchhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHhh-hhhHHHHHHHHHHHHHHH-HhhcccCCC
Q psy17080 463 IYTAELFPTKMRNLGVGASSVPAGVALILIPYLW--HMQSIN-IHFPMGLLGVVGVLGGLS-VLLLPDTTG 529 (565)
Q Consensus 463 ~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~--~~~~~~-~~~~~~~~~~~~~i~~~~-~~~l~et~~ 529 (565)
+++.|.+|++.|+.+.|+.+....+|.+++|.+. ..+..+ +...+++.+++.++..++ .+++||+..
T Consensus 142 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 142 RTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 9999999999999999999999999999999883 356667 888899888887766554 466777654
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.15 E-value=1.3e-09 Score=111.23 Aligned_cols=136 Identities=8% Similarity=0.012 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH---hhcCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17080 388 VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMT---LGFAPGSFITISLAMVGKFAISSSNVIIPIY 464 (565)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (565)
..+......++..++.++.|++.||+|||+.+.++.++.+++.++. . +.++.+..++..++.+++.+...+...++
T Consensus 63 ~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~ 141 (438)
T 3o7q_A 63 AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA-EIMNYTLFLVGLFIIAAGLGCLETAANPF 141 (438)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHHHhhHHHhhhhHHHH
Confidence 3455556667778899999999999999999999999999888877 5 56677777788888999999999999999
Q ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHHH--HHH-HHhh-------------------------hhhHHHHHHHHHHH
Q psy17080 465 TAELFPTKMRNLGVGASSVPAGVALILIPYL--WHM-QSIN-------------------------IHFPMGLLGVVGVL 516 (565)
Q Consensus 465 ~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i--~~~-~~~~-------------------------~~~~~~~~~~~~~i 516 (565)
+.|.+|++.|+.+.|+.+....+|.+++|.+ ... ...+ +..++.+.+++.++
T Consensus 142 ~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 221 (438)
T 3o7q_A 142 VTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLL 221 (438)
T ss_dssp HHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 333 2222 56677777766666
Q ss_pred HHHHHhhc
Q psy17080 517 GGLSVLLL 524 (565)
Q Consensus 517 ~~~~~~~l 524 (565)
..++.++.
T Consensus 222 ~~~~~~~~ 229 (438)
T 3o7q_A 222 VALLIMLT 229 (438)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 55554443
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.07 E-value=6.2e-09 Score=108.05 Aligned_cols=133 Identities=11% Similarity=0.100 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17080 389 YLNTIISGIVEFPAIVISIFILLK-MGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAE 467 (565)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~dr-~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 467 (565)
........++..++.++.|+++|| +|||+++..+.++.+++.++.. +.++.+...+..++.+++.+...+...+++.|
T Consensus 57 ~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 135 (491)
T 4aps_A 57 ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA-LPFGASALFGSIILIIIGTGFLKPNVSTLVGT 135 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH-SCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 344556667788899999999999 8999999999999999888887 66677777777888899999999999999999
Q ss_pred ccchhh--hhhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHh
Q psy17080 468 LFPTKM--RNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVL 522 (565)
Q Consensus 468 ~~p~~~--r~~~~g~~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~ 522 (565)
.+|++. |+.+.++.+....+|..++|.+ ...+..++...|.+.++..+++.++.+
T Consensus 136 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 136 LYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999988 7778888889999999999988 334557888888888777776665544
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.04 E-value=1.2e-09 Score=109.24 Aligned_cols=151 Identities=12% Similarity=-0.025 Sum_probs=118.1
Q ss_pred hhccCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q psy17080 378 VLNLSNIGGDV---YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAI 454 (565)
Q Consensus 378 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (565)
+...++++.+. ........+...++.++.|++.||+|||+.+..+.++.+++.++.. +.++.+...+..++.+++.
T Consensus 24 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~l~g~~~ 102 (375)
T 2gfp_A 24 ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV-TTSSLTVLIAASAMQGMGT 102 (375)
T ss_dssp HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHH
Confidence 33445555443 3445556677788899999999999999999999999888888777 5555566677777888888
Q ss_pred HHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHH-HHhhcccCCC
Q psy17080 455 SSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWH--MQSINIHFPMGLLGVVGVLGGL-SVLLLPDTTG 529 (565)
Q Consensus 455 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~--~~~~~~~~~~~~~~~~~~i~~~-~~~~l~et~~ 529 (565)
+...+....++.|.+|++.|+++.++.+....+|..++|.+.. .+..++...+.+.+++.++..+ ..+.+||++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 103 GVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred HhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 8888999999999999999999999999999999999999832 3445778888888777776665 3456677654
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.99 E-value=9e-10 Score=111.88 Aligned_cols=142 Identities=13% Similarity=0.066 Sum_probs=115.0
Q ss_pred chhhHHHHHHHHHHHhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhhHhhhhhhh
Q psy17080 154 SSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLC 233 (565)
Q Consensus 154 ~~~~~l~~s~~~lg~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 233 (565)
....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457777888888889999999999999999999999888888888888888888888888888888777777778899
Q ss_pred ccccccchhHHHHHH-hhhhhHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHH-hhhcccch
Q psy17080 234 MELVGGKWLTIMGVM-YLFPVPVGYIAISGIAYYS---HNWRLLQWVITIPTIFFLTL-WWIMPESP 295 (565)
Q Consensus 234 ~e~~~~~~r~~~~~~-~~~~~~lG~~~~~~l~~~~---~~Wr~~~~~~~~~~~~~~~~-~~~~pesp 295 (565)
.|.+|++.|+...++ ++.+..+|..++|.++..+ .+++..|.+.++..++..+. +++.||.+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999998888 4778888988888877654 36777888877776666554 44456653
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.96 E-value=1.7e-08 Score=104.69 Aligned_cols=137 Identities=13% Similarity=0.111 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHhh-----------------cCCchHHHHHHHHHHHHHHH
Q psy17080 393 IISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLG-----------------FAPGSFITISLAMVGKFAIS 455 (565)
Q Consensus 393 ~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~ 455 (565)
....++.++|.++.|+++||+|||+.+.++.++..++.++.+. +.++.+.+++.-++.|++.+
T Consensus 62 s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G 141 (491)
T 4gc0_A 62 ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVG 141 (491)
T ss_dssp HTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3445677889999999999999999999999988888777652 12344667777888999999
Q ss_pred HHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH----------HhhhhhHHHHHHHHHHHHHHHHhhcc
Q psy17080 456 SSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWHMQ----------SINIHFPMGLLGVVGVLGGLSVLLLP 525 (565)
Q Consensus 456 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~----------~~~~~~~~~~~~~~~~i~~~~~~~l~ 525 (565)
...+...++++|..|++.|+...++.+....+|.++++.+.... ..++...+.+..+..++..+..+++|
T Consensus 142 ~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 221 (491)
T 4gc0_A 142 LASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVP 221 (491)
T ss_dssp HHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCC
Confidence 99999999999999999999999999998888888887763221 12344445555555555556667888
Q ss_pred cCCC
Q psy17080 526 DTTG 529 (565)
Q Consensus 526 et~~ 529 (565)
|+.+
T Consensus 222 eSp~ 225 (491)
T 4gc0_A 222 ESPR 225 (491)
T ss_dssp CCHH
T ss_pred CChH
Confidence 8754
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.95 E-value=1.6e-08 Score=105.78 Aligned_cols=136 Identities=8% Similarity=0.006 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHhhcCC-chHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17080 388 VYLNTIISGIVEFPAIVISIFILLKM-GRRRPLCLTTLGAGLACLMTLGFAP-GSFITISLAMVGKFAISSSNVIIPIYT 465 (565)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~dr~-grr~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (565)
.........++.+++.++.|+++||+ |||+.+.++.++.+++.++.. +.+ +.+...+..++.+++.+...+...+++
T Consensus 56 ~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 134 (524)
T 2xut_A 56 AKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLA-IFEHSVQGFYTGLFLIALGSGGIKPLVSSFM 134 (524)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHH-HTSSCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHhccccchhHHHHH
Confidence 45556667778888999999999999 999999999988888888777 555 666667777788888888889999999
Q ss_pred ccccchhhhhhHHHH---HHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhhc
Q psy17080 466 AELFPTKMRNLGVGA---SSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLLL 524 (565)
Q Consensus 466 ~e~~p~~~r~~~~g~---~~~~~~lg~~i~p~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~~l 524 (565)
.|.+|++.|+.+.+. .+....+|.+++|.+ ...+..++...|.+.+++.+++.++.++.
T Consensus 135 ~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 135 GDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp HHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999776665 888889999999988 44455678888888887777666555443
No 15
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=37.43 E-value=3.2e+02 Score=27.17 Aligned_cols=11 Identities=18% Similarity=0.005 Sum_probs=5.5
Q ss_pred HHHHhhhhccC
Q psy17080 59 HIFALTFQGAS 69 (565)
Q Consensus 59 ~~~~~~f~~~~ 69 (565)
..+--+|+.|+
T Consensus 28 ivlf~~fv~y~ 38 (490)
T 3hd6_A 28 VILFGVFVRYD 38 (490)
T ss_dssp HHHHHHHEECC
T ss_pred HHhhheeEEec
Confidence 34444555554
No 16
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=36.10 E-value=7.5 Score=19.89 Aligned_cols=14 Identities=43% Similarity=0.660 Sum_probs=11.1
Q ss_pred hhhcccccccchhh
Q psy17080 174 FSGLVSDKFGRKKA 187 (565)
Q Consensus 174 ~~G~l~Dr~Grr~~ 187 (565)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46788889999864
Done!