RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17080
(565 letters)
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 336 bits (864), Expect = e-109
Identities = 182/508 (35%), Positives = 281/508 (55%), Gaps = 23/508 (4%)
Query: 36 GDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWCTIP--ASLSTLTLDQWKNLSS 93
G+FG +Q + L L+L +H + F GA+ + C +P A+LS+
Sbjct: 1 GEFGPFQRRTFLLLALPIALLAFHFVLIVFLGATPEHHCRLPDAANLSSRCELNLTLPRL 60
Query: 94 ISGVPYNPCNILDLDYSLP-YSTLLNIRRDVT--------AVRPCLQ-WTYDSSSFGHTI 143
G P + L + + ++ + + A PCL W Y +F TI
Sbjct: 61 PDGRPES-----CLRFMVDQWANPSLLGCEPLKLSDLGLAATEPCLDGWEYSYDTFSSTI 115
Query: 144 ISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVA 203
++EWDLVC ++ L + F +GV G F G +SD+FGRKK L+ S + V GVL A
Sbjct: 116 VTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTA 175
Query: 204 ISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGI 263
SP + ++LV R +G I VL E + K I+G + +G + + +
Sbjct: 176 FSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLV 235
Query: 264 AYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLP 323
AY+ +WR LQ +++PT F L W +PESPRWL+S GR +EA+KIL AK N +KLP
Sbjct: 236 AYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLP 295
Query: 324 LNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSN 383
+ L E LS+++ K+ +DL+RTP +R + ++WF+ YYGLVL+L N
Sbjct: 296 AEVLSLSLEKDLSSSK---KQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGN 352
Query: 384 IGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPG--SF 441
+GG++YL+ ISG+VE PA +I++ ++ ++GRR + + L AG+A L L F P F
Sbjct: 353 LGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALL-LLLFVPVDLYF 411
Query: 442 ITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWHMQSI 501
+ +LA++GKF I+S+ ++ +YTAEL+PT +RNLGVG S A V I+ P+L ++
Sbjct: 412 LRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEK 471
Query: 502 NIHFPMGLLGVVGVLGGLSVLLLPDTTG 529
+ P+ L G + +L G+ L LP+T G
Sbjct: 472 WLFLPLVLFGGLALLAGILTLFLPETKG 499
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 117 bits (296), Expect = 2e-28
Identities = 95/394 (24%), Positives = 165/394 (41%), Gaps = 33/394 (8%)
Query: 163 VFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPW--FELYLVVRFFLGF 220
+F +G G F+G + D+FGRKK+L+ V ++ +L + F + +V R +G
Sbjct: 54 IFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGL 113
Query: 221 FC-VSIVFSGFVLCMELVGGKWLTIMGVMYLFPV----PVGYIAISGIAYYSHN--WRLL 273
V + E+ K +G +Y + V I G+ YS++ WR+
Sbjct: 114 GVGGISVLVP-MYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIP 172
Query: 274 QWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKES 333
+ +P I L +PESPRWLV G+ +EA +L R + +++ +E
Sbjct: 173 LGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVL-----AKLRGVSDVDQEIQEEK 227
Query: 334 VLSTNQDVGKKVQVMDLWRTP----LIRLISFVQYIIWFS--VYLVYYGLVLNLSNIGGD 387
+K ++L+R + + +Q + + YY + + D
Sbjct: 228 DSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSD 287
Query: 388 VYLNTIISGIVEFPAIVISIFILLKMGRRRPL---------CLTTLGAGLACLMTLGFAP 438
L TII G+V F I+IF++ + GRR L C LG L + A
Sbjct: 288 SLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAG 347
Query: 439 GSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYLWHM 498
I L + FA+ + + +ELFP +R + ++ +A LI +L+ +
Sbjct: 348 IVAIVFILLFIAFFAL-GWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPI 406
Query: 499 QSINIHFPMGLL-GVVGVLGGLSV-LLLPDTTGL 530
+ I + L+ + VL L V +P+T G
Sbjct: 407 ITGAIGGYVFLVFAGLLVLFILFVFFFVPETKGR 440
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 110 bits (276), Expect = 1e-25
Identities = 104/412 (25%), Positives = 168/412 (40%), Gaps = 40/412 (9%)
Query: 154 SSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVL---VAISPWFEL 210
SSL L +FL+G G F+G +SD+FGRKK+L+ + ++ +L A + E+
Sbjct: 70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEM 129
Query: 211 YLVVRFFLGFF--CVSIVFSGFV--LCMELVGGKWLTIMGVMYLFPVPVGYIAISG--IA 264
+V R LG S + ++ + + + G ++ + F + V Y SG
Sbjct: 130 LIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSL 189
Query: 265 YYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPL 324
+ WR+ + IP + +PESPRWLV GR +EA K L + L
Sbjct: 190 NNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKEL 249
Query: 325 NLEKLLKE-----SVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFS--VYLVYYGL 377
E L + S G R L + +Q+ F+ ++YY
Sbjct: 250 LDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGV-VLQWFQQFTGINAIMYYSP 308
Query: 378 VLNLSNIG---GDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTL 434
+ N G +L +II G V F ++IF++ + GRR L L CL L
Sbjct: 309 TI-FENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLL-LIGAAGMAICLFVL 366
Query: 435 GFAPGSFITISLAMVGKFAISSSNVIIPIYT-----------AELFPTKMRNLGVGASSV 483
G SF+T S G AI + I + +E+FP +R G+ +
Sbjct: 367 GILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVA 426
Query: 484 PAGVALILIPYLWHMQSINIHFP-----MGLLGVVGVLGGLSVLLLPDTTGL 530
+A ++ +L+ +I G L V+G++ LP+T G
Sbjct: 427 ANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLI--FVYFFLPETKGR 476
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 78.2 bits (193), Expect = 2e-15
Identities = 71/327 (21%), Positives = 133/327 (40%), Gaps = 23/327 (7%)
Query: 165 LLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVS 224
L+G+AFG F G ++D+ GR++ L+ S++ V +L A++ L++RF G
Sbjct: 62 LIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGG 121
Query: 225 IVFSGFVLCMELVGGKW-LTIMGVMYLFPVPVGYI---AISGIAYYSHNWRLLQWVITI- 279
++ + L E ++ T +G+M+ P+G ++G WR L +V I
Sbjct: 122 LMPNLNALVSEYAPKRFRGTAVGLMFC-GYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIA 180
Query: 280 PTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQ 339
P + L L +PES +LVS + + + ++ + ++
Sbjct: 181 PLLLLLLLMRFLPESIDFLVSKR---------PETVRRIVNAIAPQMQAEAQSALPEQKA 231
Query: 340 DVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLV----LNLSNIGGDVYLNTIIS 395
G K V I+ + ++++F + + Y L + +G + L
Sbjct: 232 TQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGG 291
Query: 396 GIVEFPAIVISIFI---LLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKF 452
+ F ++ SI ++G R L LGA A L+ + + + A+ G F
Sbjct: 292 ALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFF 351
Query: 453 AISSSNVIIPIYTAELFPTKMRNLGVG 479
+ A +PT +R GVG
Sbjct: 352 VN-GGQSGLYALMALFYPTAIRATGVG 377
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 77.7 bits (191), Expect = 6e-15
Identities = 74/275 (26%), Positives = 111/275 (40%), Gaps = 45/275 (16%)
Query: 145 SEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAI 204
+E DL +S L +V+L G+ G FF G ++DK GRK+ L+ L +
Sbjct: 193 AEKDLCIPDSGKGMLGLIVYL-GMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSF 251
Query: 205 SPWFELYLVVRFFLGFF---CVSIVFSGFV--------------LCM-ELVGGKWLTIMG 246
+ +L R GF + IVFS F LCM ++GG + M
Sbjct: 252 VQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMA 311
Query: 247 VMYLFPVPVGYIAISGIAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKE 306
+ P G+ G AY H+WR+ V P +F + MPESPR+ + G++ E
Sbjct: 312 -WAIIP-HYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDE 369
Query: 307 AMKILGDAAKFNSR--------------KLPLNLEKLLK-ESVLST-NQDVGKKVQVM-- 348
A IL N R K ++L++ ES T Q +
Sbjct: 370 AWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGG 429
Query: 349 DLWRT------PLIRLISFVQYIIWFSVYLVYYGL 377
+W P +R I+ +WF++ YYGL
Sbjct: 430 GIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGL 464
Score = 46.9 bits (111), Expect = 2e-05
Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 4/144 (2%)
Query: 388 VYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACL-MTLGFAPGSFITISL 446
+Y + + P ++S ++ K+GR R L + + + ++C ++ G + + I + L
Sbjct: 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIAL-L 655
Query: 447 AMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALIL-IPYLWHMQSINIHF 505
+ G +I++ N + + T EL+P+ R G + A +L I I
Sbjct: 656 CLFGGLSIAAWNAL-DVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAA 714
Query: 506 PMGLLGVVGVLGGLSVLLLPDTTG 529
P+ GGL L LPDT G
Sbjct: 715 PILFASAALACGGLLALKLPDTRG 738
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 67.0 bits (164), Expect = 5e-12
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 3/143 (2%)
Query: 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYL 212
++S L F LG A G +G +SD+FGR++ L+ L+ + +L+A + L L
Sbjct: 32 SASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLL 91
Query: 213 VVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYI---AISGIAYYSHN 269
V RF LG ++ + L E K ++ +G + + G+ S
Sbjct: 92 VGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG 151
Query: 270 WRLLQWVITIPTIFFLTLWWIMP 292
WR L ++ I + L +
Sbjct: 152 WRWLFLILAILGLLLALLLLFLL 174
Score = 58.5 bits (142), Expect = 4e-09
Identities = 33/179 (18%), Positives = 67/179 (37%), Gaps = 3/179 (1%)
Query: 350 LWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSNIG-GDVYLNTIISGIVEFPAIVISIF 408
L L+ L F+ ++ + + + + + L + G+ ++
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233
Query: 409 ILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAEL 468
+ ++GRRR L L L L+ L AP + + ++ F + + + +EL
Sbjct: 234 LSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASEL 293
Query: 469 FPTKMRNLGVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLLLP 525
P + R G + + L P L + + +L + +L L +LLLP
Sbjct: 294 APPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352
Score = 40.4 bits (95), Expect = 0.002
Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 3/170 (1%)
Query: 358 LISFVQYIIWFSVYLVYYGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRR 417
L F+ + + L +L L + +++ ++ + GRRR
Sbjct: 6 LGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRR 65
Query: 418 PLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLG 477
L L L L L+ + + + ++G + AE FP K R
Sbjct: 66 VLLLGLLLFALGSLLLAFASSLWLLLVGRFLLG-LGGGALYPAAAALIAEWFPPKERGRA 124
Query: 478 VGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLLLP 525
+G S G+ +L P L +S+ + +L ++G+L L +L L
Sbjct: 125 LGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
Score = 37.3 bits (87), Expect = 0.015
Identities = 28/135 (20%), Positives = 56/135 (41%), Gaps = 4/135 (2%)
Query: 162 MVFLLGVAFGGFFSGLVSDKFGRKKALM-GSLVFQLVLGVLVAISPWFELYLVVRFFLGF 220
+F LG G GL+SD+ GR++ L+ L+ + +L+A++P L LV LGF
Sbjct: 218 SLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGF 277
Query: 221 FCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYI---AISGIAYYSHNWRLLQWVI 277
+ L EL + ++ +G ++G+ + + + ++
Sbjct: 278 GLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLIL 337
Query: 278 TIPTIFFLTLWWIMP 292
+ L ++P
Sbjct: 338 AALALLAALLLLLLP 352
Score = 32.7 bits (75), Expect = 0.45
Identities = 28/157 (17%), Positives = 53/157 (33%), Gaps = 4/157 (2%)
Query: 140 GHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLG 199
+I+EW L F LG G GL+++ G + + + L+L
Sbjct: 108 AAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLA 167
Query: 200 VLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGG----KWLTIMGVMYLFPVPV 255
+L+ L L + FFL F + + L ++ V G + ++ + L +
Sbjct: 168 LLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILG 227
Query: 256 GYIAISGIAYYSHNWRLLQWVITIPTIFFLTLWWIMP 292
+ LL + + + L L
Sbjct: 228 ALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPS 264
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 66.7 bits (163), Expect = 7e-12
Identities = 56/346 (16%), Positives = 110/346 (31%), Gaps = 44/346 (12%)
Query: 158 SLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFF 217
L F LG A +G +SD+FGR++ L+ L+ + +L+ + L LV+R
Sbjct: 35 GLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVL 94
Query: 218 LGFFCVSIVFSGFVLCMELVG----GKWLTIMGVMYLFPVPVGYIAISGIAYYSHNWRLL 273
G ++ + L + G+ L ++ + +G + + G+ WR
Sbjct: 95 QGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPL-LGGLLASLFGWRAA 153
Query: 274 QWVITIPTIFFLTLW-WIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKE 332
++ I + L ++P P +
Sbjct: 154 FLILAILALLAAVLAALLLPRPPP------------------------ESKRPKPAEEAP 189
Query: 333 SVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSNIGGDVYLNT 392
+ L + + V+ L L+ +F + + +Y GL L
Sbjct: 190 APLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGL---------SALLAG 240
Query: 393 IISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKF 452
++ G+ + + + R L L L LG A S SL ++
Sbjct: 241 LLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVAL 300
Query: 453 AI-----SSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIP 493
+ + ++L P + R G + + L P
Sbjct: 301 LLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346
Score = 40.5 bits (95), Expect = 0.002
Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 4/170 (2%)
Query: 358 LISFVQYIIWFSVYLVYYGLVLNLSNIGGDVY-LNTIISGIVEFPAIVISIFILLKMGRR 416
L +F+ + + + I L + A ++ + + GRR
Sbjct: 3 LAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRR 62
Query: 417 RPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNL 476
R L + L L L+ L + + + + G + A+ FP + R
Sbjct: 63 RVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQG-LGGGALFPAAAALIADWFPPEERGR 121
Query: 477 GVGASSVPAGVALILIPYL--WHMQSINIHFPMGLLGVVGVLGGLSVLLL 524
+G S G+ L P L +L ++ +L + LL
Sbjct: 122 ALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALL 171
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 64.5 bits (157), Expect = 4e-11
Identities = 60/371 (16%), Positives = 115/371 (30%), Gaps = 31/371 (8%)
Query: 131 QWTYDSSSFGHTIISEWDLVCSNSSLESLAE--------MVFLLGVAF-----GGFFSGL 177
QW S+++ ++ +D L +A L+ A G GL
Sbjct: 10 QWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGL 69
Query: 178 VSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELV 237
D++GR+ ++ S+V + +P + + R +G S +E
Sbjct: 70 WGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESW 129
Query: 238 GGKWLTIMGVMYLFPVPVGYIAISGIA-----YYSHNWRLLQWVITIPTIFFLTLWWIMP 292
+ + VG + + + + WR L ++ +P IF L L +P
Sbjct: 130 PKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIP 189
Query: 293 ESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWR 352
E+ W + E + V++ + +
Sbjct: 190 EAEDWKEKHAGKA---LVRTMVDILYGG------EHRIANIVMTLAAAMVQSAGKRWPTF 240
Query: 353 TPLIRLISFVQYIIWFS--VYLVYYGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFIL 410
L+ L+ F + Y L LS + + S I + F+
Sbjct: 241 VYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIV--VFSNIGAIVGGCVFGFLG 298
Query: 411 LKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFP 470
+GRR+ + L L + + + + I+P + E FP
Sbjct: 299 DWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFP 358
Query: 471 TKMRNLGVGAS 481
T R G+G +
Sbjct: 359 TDQRAAGLGFT 369
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 64.3 bits (157), Expect = 7e-11
Identities = 104/436 (23%), Positives = 167/436 (38%), Gaps = 91/436 (20%)
Query: 165 LLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAI-SPWFELYLVVRFFLGFFCV 223
L+G GG G S++FGR+ SL VL + A+ S W E GF
Sbjct: 65 LIGCIIGGALGGYCSNRFGRRD----SLKIAAVLFFISALGSAWPEF--------GFT-- 110
Query: 224 SIVFSGFVLCMELVGGKWLTIMGV---MYLFPVPVGYIAISGI----------------- 263
SI E V + + +GV L P+ + IA + I
Sbjct: 111 SIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQL 170
Query: 264 AYYSHNWRLL-----QWVIT-----------IPTIFFLTLWWIMPESPRWLVSMGRNKEA 307
Y N+ + W+ T IP + FL L + +PE+PR+L+S G+ ++A
Sbjct: 171 VVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQA 230
Query: 308 MKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDV---------GKKVQVMDLWRTPLIRL 358
IL K L + L+E S + G V V+ + +
Sbjct: 231 EGIL---RKIMGNTLA---TQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGV-------M 277
Query: 359 ISFVQYIIWFSVYLVYYGLVLNLSNIGGDV-YLNTIISGIVEFPAIVISIFILLKMGRRR 417
+S Q + +V L Y + D+ L TII G++ V++I + K GR+
Sbjct: 278 LSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKP 337
Query: 418 PLCLTTLG--AGLACLMTLGFAPGSFITISLAM---VGKFAISSSNVIIPIYTAELFPTK 472
+ LG G+ L T + I L+M V FA+S V + +E+FP
Sbjct: 338 LQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCW-VLLSEIFPNA 396
Query: 473 MRNLGVGASSVPAGVALILI----PYLWHMQSINIHF-PM---GLLGVVGVLGGLSVL-L 523
+R + + +A + P + + HF + G +GVL L +
Sbjct: 397 IRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKF 456
Query: 524 LPDTTGLADNLHQLEN 539
+P+T G L ++E
Sbjct: 457 VPETKG--KTLEEMEA 470
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 55.1 bits (133), Expect = 6e-08
Identities = 102/455 (22%), Positives = 165/455 (36%), Gaps = 91/455 (20%)
Query: 153 NSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYL 212
SS+ + +G G F G ++DK GRK+ L+ ++ V +SP
Sbjct: 54 PSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKS 113
Query: 213 VV------RFFLGFF------CVSIVFSGF------------VLCMELVGGKWLTIMGVM 248
V+ RF+LG +I+ S F V M+ G + G +
Sbjct: 114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFG----ILAGAI 169
Query: 249 YLFPVPVGYIAISGIAYYSHN------------WRLLQWVITIPTIFFLTLWW--IMPES 294
V G+ A + WR+L +P + L L++ +PE+
Sbjct: 170 VALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPAL--LALYFRLTIPET 227
Query: 295 PRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKES--VLSTNQDVGKKVQVMDLWR 352
PR+ + ++ E + D + K+ +++ K S V WR
Sbjct: 228 PRYTADVAKDVE--QAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWR 285
Query: 353 TPLIRLISFVQYIIWFSVYLVYYGLVLN----LSNIG------GDVYL---------NTI 393
L + WF + + +YG+ LN LS IG + N I
Sbjct: 286 HGKHLLGTAGS---WFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLI 342
Query: 394 ISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFA-----PGSFITI-SLA 447
I+ P +++F++ +GR+ P+ L LGFA F+ I LA
Sbjct: 343 IALAGTVPGYWVTVFLVDIIGRK-PIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLA 401
Query: 448 MVGKFAISSSNVIIPIYTAELFPTKMRNL--GVGASSVPAG--VALILIPYLWHMQSINI 503
FA N I E+FPT+ R+ G+ A+S AG + YL
Sbjct: 402 QF--FANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTK 459
Query: 504 HFPMG--------LLGVVGVLGGLSVLLLPDTTGL 530
+P G + + LG L LL+P+T G
Sbjct: 460 GYPTGIWMGHVLEIFALFMFLGILFTLLIPETKGK 494
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 51.1 bits (123), Expect = 9e-07
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 16/142 (11%)
Query: 163 VFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFC 222
+ LGVA G L++ + R++ L+G L +V +L A++P F + L+ R G
Sbjct: 56 AYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAG-LA 114
Query: 223 VSIVFS-GFVLCMELVG-GKWLTIMGVMYL-------FPVPVGYIAISGIAYYSHNWRLL 273
+ +S L LV GK + +++ VP+G + + WR
Sbjct: 115 HGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLG-TFLGQLF----GWRAT 169
Query: 274 QWVIT-IPTIFFLTLWWIMPES 294
I + + L LW ++P S
Sbjct: 170 FLAIAVLALLALLLLWKLLPPS 191
Score = 31.4 bits (72), Expect = 1.2
Identities = 17/91 (18%), Positives = 28/91 (30%)
Query: 158 SLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFF 217
SL + F + G G ++D+ R+ + L+ L L L L L + F
Sbjct: 250 SLVLLAFGIAGFIGNLLGGRLADRGPRRALIAALLLLALALLALTFTGASPALALALLFL 309
Query: 218 LGFFCVSIVFSGFVLCMELVGGKWLTIMGVM 248
GF + L +
Sbjct: 310 WGFAFSPALQGLQTRLARLAPDAADLAGSLN 340
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 47.6 bits (114), Expect = 1e-06
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 4/135 (2%)
Query: 164 FLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCV 223
+ LG SGL++D+FGRK L+ L ++ + A+S + ++ RF GF
Sbjct: 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAA 66
Query: 224 SIVFSGFVLCMELV-GGKWLTIMGVMYLFPV--PVGYIAISGIAYYSHNWRLLQWVITIP 280
+ +G L ++ + +G+M P+ + G+ WR + I
Sbjct: 67 FALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAIL 126
Query: 281 TIF-FLTLWWIMPES 294
+ F+ L +++PE+
Sbjct: 127 ALAAFILLAFLLPET 141
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 49.6 bits (119), Expect = 2e-06
Identities = 76/393 (19%), Positives = 134/393 (34%), Gaps = 64/393 (16%)
Query: 164 FLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCV 223
F G G F G + D+FG +K L +V V L A + + ++R LG
Sbjct: 38 FSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLG---- 93
Query: 224 SIVFSGFVLCMELVGGKWL------TIMGVMYLFPVPVGYI---AISGIAYYSHNWRLLQ 274
+ F + L+ W T + + +G I + G +W+
Sbjct: 94 -AAEAPFFPGIILIVASWFPASERATAVSIFNSA-QGLGGIIGGPLVGWILIHFSWQWAF 151
Query: 275 WVITIPTIFFLTLWWIM----PESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLL 330
+ + I + LW P+ +WL + +L +
Sbjct: 152 IIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTP-------- 203
Query: 331 KESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQY---------IIWFSVYLVYYGLVLNL 381
KK Q+ +L + + ++ Q+ + WF YLV L++
Sbjct: 204 ------------KKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLV-QERGLSI 250
Query: 382 SNIGGDVYLNTIISGIVEFPAIVISIFI-LLKMGRRRPLCLTTLGAGLAC--LMTLGFAP 438
G + GIV F +++ + L + R + L A +A L L FA
Sbjct: 251 LEAG----FMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFAT 306
Query: 439 GSFIT----ISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPY 494
++L +G F + + + + ++ P + L G + + I+ P
Sbjct: 307 NYVNIPYAALALVALGFFGLGAGAIGWAL-ISDNAPGNIAGLTGGLINSLGNLGGIVGPI 365
Query: 495 LWHMQSINIHFPMGLLGVVGVL---GGLSVLLL 524
+ + G L VV L G LS LLL
Sbjct: 366 VIGAIAATTGSFAGALMVVAALALIGALSYLLL 398
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 48.0 bits (115), Expect = 8e-06
Identities = 78/332 (23%), Positives = 121/332 (36%), Gaps = 57/332 (17%)
Query: 165 LLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVS 224
+LG+ G G ++D+ GRK+ L+ S+ + + A + F LV R G
Sbjct: 60 ILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGG 119
Query: 225 IVFSGFVLCMELVGGKWL-TIMGVMYLFPVPVGYIAISGIAYYS---HNWRLLQWVITI- 279
+ + L E VG + T + +MY VP G S I + WR + +V +
Sbjct: 120 ALPNLIALTSEAVGPRLRGTAVSLMYC-GVPFGGALASVIGVLAAGDAAWRHIFYVGGVG 178
Query: 280 PTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQ 339
P + L +PES + A ++ L L E
Sbjct: 179 PLLLVPLLMRWLPESRAFA---------------QAAGAGKQRAPVLRALFGE------- 216
Query: 340 DVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGL-------VLNLSNIGGDVYLNT 392
G+ + LW + LI + W LV GL V NIGG
Sbjct: 217 --GRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGG------ 268
Query: 393 IISGIVEFPAIVISIFILLKMGRRRPLCLTTL--GAGLACLMTLGFAPGS-FITISLAMV 449
+ S+ I M R RP + L LA L L AP + ++
Sbjct: 269 ----------ALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAA 318
Query: 450 GKFAISSSNVIIPIYTAELFPTKMRNLGVGAS 481
G F + +V+ + +PT++R GVGA+
Sbjct: 319 GLFVVGGQSVLYAL-APLFYPTQVRGTGVGAA 349
Score = 33.4 bits (77), Expect = 0.28
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 158 SLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFF 217
L ++ F +G A G G + D+ ++ ++ L +A +P F L+ F
Sbjct: 258 GLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFA 317
Query: 218 LGFFCV 223
G F V
Sbjct: 318 AGLFVV 323
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 45.5 bits (108), Expect = 5e-05
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 6/136 (4%)
Query: 164 FLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCV 223
+LLG A G G +SD++GR+ L+ L + + +A+S E LV+RF F
Sbjct: 49 YLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGAS 108
Query: 224 SIVFSGFVLCMELVGG----KWLTIMGVMYLFPVPVGYIAISGIAYYSHNWRLLQWVITI 279
+ L ++ G + +I+ + V + I + W + +++
Sbjct: 109 AGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WHAIFAFLSL 167
Query: 280 PTIFFLTL-WWIMPES 294
I L ++I+PE+
Sbjct: 168 AGILLSALIFFILPET 183
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 39.9 bits (94), Expect = 0.003
Identities = 35/142 (24%), Positives = 51/142 (35%), Gaps = 19/142 (13%)
Query: 368 FSVYLVYYGL-VLNLSNIGGDVYLNTIISGIVEFPAIVISIFILL--KMGRRRPL-CLTT 423
+ YL Y L LS L ++S I+ F I I + L ++GRR L T
Sbjct: 238 ITTYLPTYLTQTLGLSA--NSALLVLMLSLILFF--ITIPLSGALSDRIGRRPVLIIFTV 293
Query: 424 LGAGLAC--LMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVG-- 479
L A LA LM L + + L + + + ELFPT++R G
Sbjct: 294 LAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPMGSFLPELFPTEVRYTGASLA 353
Query: 480 -------ASSVPAGVALILIPY 494
+A L+
Sbjct: 354 YNLAGAIFGGFAPYIAAALVAM 375
Score = 33.0 bits (76), Expect = 0.46
Identities = 29/103 (28%), Positives = 39/103 (37%), Gaps = 18/103 (17%)
Query: 165 LLGVAFGGF----FSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGF 220
L+ F SG +SD+ GR+ L+ VL A+ L L
Sbjct: 261 LMLSLILFFITIPLSGALSDRIGRRPVLII-------FTVLAALLAVPLLMA----LLDS 309
Query: 221 FCVSIVFSGFVLCMELVGGKWLTIMGVMY--LFPVPVGYIAIS 261
++ F VL M L+GG + MG LFP V Y S
Sbjct: 310 GSFTLFFFL-VLGMALIGGMYTGPMGSFLPELFPTEVRYTGAS 351
Score = 29.9 bits (68), Expect = 4.2
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 170 FGGFFSGLVSDKFGRKKALMGSLVFQ----LVLGVL---VAISPWFELYLVV-RFFLGF 220
G G D+ GRKK L+ +L+ L++G+L I W + L++ R GF
Sbjct: 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGF 108
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 39.1 bits (92), Expect = 0.005
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 163 VFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFF 217
+FL G A G G +SD++GRK L+ L + + + LV+RF
Sbjct: 49 LFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFV 103
>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and
metabolism].
Length = 448
Score = 37.2 bits (87), Expect = 0.023
Identities = 73/343 (21%), Positives = 121/343 (35%), Gaps = 71/343 (20%)
Query: 164 FLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFF-- 221
F + F G++SD+ + + L+ ++ +L SP L+ V+ G+F
Sbjct: 73 FSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQG 132
Query: 222 ------CVSIV--FS----GFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYYSHN 269
+I FS G W T + +A+ +
Sbjct: 133 MGWPPCARTITHWFSRKERGTWW------SIWNTSHNIGGALAPL---VALLAFFAFHGG 183
Query: 270 WRLLQWVITIPTIFF-LTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEK 328
WR + I I L L +++ + P+ S G L ++ R PL + +
Sbjct: 184 WRAAFYFPGIIAIIVALILLFLLRDRPQ---SEG--------LPPIEEY--RGDPLEIYE 230
Query: 329 LLKES-VLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGL---------- 377
KE+ L+ Q K V + LI L++ VY+V YG+
Sbjct: 231 EEKENEGLTAWQIFVKYV-----LKNKLIWLLALAN----VFVYVVRYGINDWGPLYLSE 281
Query: 378 VLNLSNIGGDVYLNTIISGIVEFPAIVISIFI-----LLKMGRRRPLCLTTLGAGLACLM 432
V S + N IS + E + ++ L GRR P+ L + A L+
Sbjct: 282 VKGFSLVKA----NWAIS-LFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLV 336
Query: 433 TLGFAPGS---FITISLAMVGKFAISSSNVIIPIYTAELFPTK 472
AP I L ++G F I ++I + AE P K
Sbjct: 337 LYWLAPNGSYLLDAILLFIIG-FLIYGPQMLIGLAAAEFVPKK 378
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 36.0 bits (84), Expect = 0.042
Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 150 VCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFE 209
V N+ L S+ ++ + G ++ +FG+K+ + ++ + VL+ P
Sbjct: 252 VLGNAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGS 311
Query: 210 LYLVVRFFLGFFCVSIVFSGFVLCM 234
L+L F + I L
Sbjct: 312 LWL---FLVLVVLAGIGLGLATLLP 333
>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system;
Provisional.
Length = 377
Score = 35.3 bits (82), Expect = 0.071
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 163 VFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFF 221
++LG A G F G ++D FGRK ++G + + V A++ + + +RF G
Sbjct: 34 AYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLA 92
>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional.
Length = 432
Score = 35.2 bits (81), Expect = 0.10
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 412 KMGRRRP-LCLTTLGAGLAC--LMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAEL 468
K+GRR LC +L A L L + L M +S I I AE+
Sbjct: 305 KIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEM 364
Query: 469 FPTKMRNLGVGAS 481
FP ++R LGVG S
Sbjct: 365 FPAQVRALGVGLS 377
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 33.7 bits (77), Expect = 0.23
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 163 VFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219
+G FGG GL++DKFGRK +M S+V V L ++ + + RF +G
Sbjct: 61 AAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVG 117
>gnl|CDD|143418 cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 1-like.
Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde (SSA) to succinate. SSADH
activity in Mycobacterium tuberculosis (Mtb) is encoded
by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb
GabD1 SSADH1 reportedly is an enzyme of the
gamma-aminobutyrate shunt, which forms a functional link
between two TCA half-cycles by converting
alpha-ketoglutarate to succinate.
Length = 429
Score = 33.6 bits (78), Expect = 0.29
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 198 LGVLVAISPW-FELYLVVRFF 217
LGV++ I PW F + V RF
Sbjct: 97 LGVVLGIMPWNFPFWQVFRFA 117
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 33.5 bits (77), Expect = 0.32
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 148 DLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKK-ALMGSLVFQLVLGVLVAISP 206
DL S + L +A V+L G+A F+G ++D+ GRK A+ G+ +F + +L +++
Sbjct: 32 DLNASEAQLH-IAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIA-SLLCSLAE 89
Query: 207 WFELYLVVRFFLG 219
L+L RF G
Sbjct: 90 TSSLFLAGRFLQG 102
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional.
Length = 496
Score = 32.7 bits (75), Expect = 0.55
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 170 FGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGF 220
FGG G + D++GR+ A++ S+V V + +P + + R +G
Sbjct: 70 FGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGM 120
>gnl|CDD|197377 cd09968, UP_III, Uroplakin III. Uroplakin IIIa and IIIb, the
dimerization partners of uroplakin Ib, are a members of
the uroplakin family. Uroplakins (UPs) are a family of
proteins that associate with each other to form plaques
on the apical surface of the urothelium, the
pseudo-stratified epithelium lining the urinary tract
from renal pelvis to the bladder outlet. UPs are
classified into 3 types: UPIa and UPIb, UPII, and
UPIIIa and IIIb. UPIs are tetraspanins that have four
transmembrane domains seperating one large and one
small extracellular domain while UPII and UPIIIs are
single-pass transmembrane proteins. UPIa and UPIb form
specific heterodimers with UPII and UPIII,
respectively, which allows them to exit the
endoplasmatic rediculum. UPII/UPIa and UPIIIs/UPIb form
heterotetramers and six of these tetramers form the
16nm particle, seen in the hexagonal array of the
asymmetric unit membrane, which is believed to form a
urinary tract barrier. Uroplakins are also believed to
play a role during urinary tract morphogenesis.
Length = 187
Score = 31.6 bits (72), Expect = 0.77
Identities = 15/46 (32%), Positives = 18/46 (39%)
Query: 11 LNVAVSTQTDPYTPDVPEDVINSAIGDFGKWQFQLTLFLSLLNIPC 56
L VAVS T+ + S F Q+ LTL S PC
Sbjct: 44 LVVAVSNATNNFNAPQNSTDPISTYSQFSGGQYYLTLRASRDLYPC 89
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 32.2 bits (74), Expect = 0.89
Identities = 88/411 (21%), Positives = 142/411 (34%), Gaps = 104/411 (25%)
Query: 164 FLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAIS---PWFELYLVVRFFLGF 220
FLL + GF + DKF + + + +F++ L +L+ ++ WF L V F LG
Sbjct: 60 FLLLSSPAGFLA----DKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLG- 114
Query: 221 FCVSIVFS----GFVLCMELVGGKWLT-------------IMGVMYLFPV--PVGYIAIS 261
S ++S G + ELVG + L+ I+ LF
Sbjct: 115 -AQSAIYSPAKYGIIP--ELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTP 171
Query: 262 GIAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRK 321
V+ + L + +P+ P AA K
Sbjct: 172 SEILGRI-APAG-LVLLAVAVLGLIFAYRLPKVP-----------------AAAPEVFDK 212
Query: 322 LPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWF------SVYLVYY 375
KLL ++ D LW I +S+ WF + + Y
Sbjct: 213 KKYLFPKLLWRNLKLLRSDR-------VLWLA--IIGLSY----FWFISQLAQANFPAYA 259
Query: 376 GLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFILL--KMGRRR-PLCLTTLGA-GLA-C 430
VL L N + ++ AI I I LL ++ R L L LGA GLA
Sbjct: 260 KEVLGLDN-------TFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALS 312
Query: 431 LMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTK-------------MRNLG 477
L L AP S ++ + F S+ I+P+ F ++N+G
Sbjct: 313 LFLLPTAP-SLASVLVLFFL-FGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVG 370
Query: 478 VGASSVPAGVALILIPYLWHMQSINIHFPMGLLGVVGVLGGL-SVLLLPDT 527
+ + L + + L+ +V ++G L ++LLLPD+
Sbjct: 371 MLLFLALTTLFSGL-----GLSPAGL---FYLIALVTLIGTLYTLLLLPDS 413
>gnl|CDD|217043 pfam02450, LACT, Lecithin:cholesterol acyltransferase.
Lecithin:cholesterol acyltransferase (LACT) is involved
in extracellular metabolism of plasma lipoproteins,
including cholesterol.
Length = 377
Score = 30.9 bits (70), Expect = 1.6
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 283 FFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLE---KLLKESVLSTNQ 339
+ +WI + + LV++G + AA ++ R P + K LK+ + +
Sbjct: 59 SKIAGYWIWHKVVKNLVNIGYERNKTVS---AAPYDWRLSPAERDDYFKKLKQLIEEALK 115
Query: 340 DVGKKVQV 347
G+KV +
Sbjct: 116 LSGQKVVL 123
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 30.7 bits (70), Expect = 2.1
Identities = 21/111 (18%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 355 LIRLISFVQYIIWFSVY---LVYYGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFILL 411
L+ L+ + I F++ +VYY + L + YL + SG +++ ++
Sbjct: 239 LLLLLMNLLLFIAFNIRGSIMVYY-VTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVK 297
Query: 412 KMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIP 462
K G+++ + L + L+ GS + I +A++ + +P
Sbjct: 298 KFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLP 348
>gnl|CDD|224883 COG1972, NupC, Nucleoside permease [Nucleotide transport and
metabolism].
Length = 404
Score = 30.7 bits (70), Expect = 2.1
Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 25/133 (18%)
Query: 156 LESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYL--- 212
L S+ + LLG+AF L S RK +++ LV+ VL+A F LY
Sbjct: 4 LISILGLAVLLGIAF------LFS--SNRKAIRWRTVIGALVIQVLLA---LFMLYTPAG 52
Query: 213 --VVRFFLGFFCVSIVFS----GFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGIAYY 266
+R I ++ FV L K I L P+ + A+ I YY
Sbjct: 53 QWALRGLANGVEKLIAYANAGINFVFG-SLADPKAGFIFAFRVLPPI-IFISALISILYY 110
Query: 267 SHNWRLLQWVITI 279
+L VI I
Sbjct: 111 ---IGILPLVIRI 120
>gnl|CDD|182693 PRK10745, trkD, potassium transport protein Kup; Provisional.
Length = 622
Score = 30.8 bits (70), Expect = 2.2
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 187 ALMGSLVFQLVLGVLVAISPW-FELYLVVRFFLGFFCVSI-VFSGFVLCMELVGGKWLTI 244
A+ G++V +L VA W + Y V + F C+ I +FS + +L+ G WL +
Sbjct: 370 AVTGTMVLTSILSTTVARKNWHWNKYFVALILIAFLCIDIPLFSANL--DKLLSGGWLPL 427
Query: 245 MGVMYLFPV 253
+ +F V
Sbjct: 428 SLGLVMFIV 436
>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein. [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 365
Score = 30.4 bits (69), Expect = 2.6
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 158 SLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGS-LVFQLVLGVLVAISPWFELYLVVRF 216
F LG G GL+ F R + G+ V L + V+ P F L+LV+ F
Sbjct: 250 GWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWF 309
Query: 217 FLGFF 221
+G
Sbjct: 310 AIGVG 314
Score = 28.8 bits (65), Expect = 7.8
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 158 SLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVV 214
SLA + +L +G ++D++ RKK ++G L+ VLVA+ P+ L +
Sbjct: 37 SLAALAGMLPYVVLSPIAGALADRYDRKKVMIG---ADLIRAVLVAVLPFVALLGGL 90
>gnl|CDD|114359 pfam05631, DUF791, Protein of unknown function (DUF791). This
family consists of several eukaryotic proteins of
unknown function.
Length = 354
Score = 30.3 bits (68), Expect = 2.7
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 172 GFFSGLVSDKFGRKKA-LMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFCVSIVFSGF 230
G G ++DK GRK+A L +++ +L + SP +++ ++ R FLG S++FS F
Sbjct: 86 GTIVGSLADKQGRKRACLTYCILY--ILSCITKHSPNYKVLMIGR-FLGGIATSLLFSAF 142
>gnl|CDD|219139 pfam06691, DUF1189, Protein of unknown function (DUF1189). This
family consists of several hypothetical bacterial
proteins of around 260 residues in length. The function
of this family is unknown.
Length = 250
Score = 30.0 bits (68), Expect = 2.7
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 14/57 (24%)
Query: 242 LTIMGVMYLFPVPVGYIAISGIAY--------------YSHNWRLLQWVITIPTIFF 284
+ V+YLF +I +S +A Y W+L + IT+PT+FF
Sbjct: 161 PVLGVVLYLFTAAFKFIGVSLLALIGLILRGIRNKKLSYRQLWKLSAYSITLPTVFF 217
>gnl|CDD|233304 TIGR01180, aman2_put, alpha-1,2-mannosidase, putative. The
identification of members of this family as putative
alpha-1,2-mannosidases is based on an unpublished
characterization of the aman2 gene in Bacillus sp. M-90
by Maruyama,Y., Nakajima,M. and Nakajima,T. (Genbank
accession BAA76709, pid g4587313). Most members of this
family appear to have signal sequences. Members from the
dental pathogen Porphyromonas gingivalis have been
described as immunoreactive with periodontitis patient
serum [Cell envelope, Biosynthesis and degradation of
surface polysaccharides and lipopolysaccharides].
Length = 750
Score = 30.3 bits (68), Expect = 3.8
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 363 QYIIWFSVYLVYYGLVLNLSNIGGDVYLNTIISGIVE 399
+ ++ Y LV G D+ + S + E
Sbjct: 233 EGTRAWAAQRFGYQLVTVRDLAGTDLASSFASSEVSE 269
>gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA;
Provisional.
Length = 406
Score = 29.9 bits (68), Expect = 4.1
Identities = 13/57 (22%), Positives = 30/57 (52%)
Query: 163 VFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219
+L G F + G +SD+ GR+ ++ + F ++ + + ++ E + ++RF G
Sbjct: 56 AYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQG 112
>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and
metabolism].
Length = 422
Score = 29.6 bits (67), Expect = 4.4
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Query: 158 SLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFF 217
SL + F G +GL+ K G K ++ L+ V L + + Y
Sbjct: 51 SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSY------ 104
Query: 218 LGFFCVSIVFSGF-VLCMELVGGKWLTIMGV 247
GFF V++ + +E ++T++G
Sbjct: 105 -GFFLVALFILASGIGLLETAANPYVTLLGK 134
>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator).
[Transport and binding proteins, Anions].
Length = 366
Score = 29.6 bits (67), Expect = 5.0
Identities = 41/208 (19%), Positives = 73/208 (35%), Gaps = 33/208 (15%)
Query: 137 SSFGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQL 196
S +I + DL S + L +L + L G A G + DKFG + SL+
Sbjct: 21 SPLAVQMIKD-DLGLSTAQLGNLVAVPVLAG-AVLRIILGFLVDKFGPRYTTTLSLLLLA 78
Query: 197 VLGVLVAISPW-FELYLVVRFFLGF----FCVSIVFSGFVLCMELVG------GKWLTI- 244
+ + ++ + + L++R F+G F + + F ++ G W +
Sbjct: 79 IPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMG 138
Query: 245 MGVMYLFPVPVGYIAISGIAYYSH-NWR--------LLQWVITIPTIFFLTLWWIM---- 291
GV P+ I G +H W + + + IFF+
Sbjct: 139 GGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPAL-LIFFVGADTPPGKPA 197
Query: 292 -----PESPRWLVSMGRNKEAMKILGDA 314
+ RW V G + +K+ D
Sbjct: 198 TGKLSFKGARWSVGTGALGDQLKVFRDR 225
>gnl|CDD|182163 PRK09952, PRK09952, shikimate transporter; Provisional.
Length = 438
Score = 29.7 bits (67), Expect = 5.2
Identities = 41/168 (24%), Positives = 61/168 (36%), Gaps = 54/168 (32%)
Query: 167 GVAF-----GGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFE--------LYLV 213
GV F GG G D+ GRK+ LM ++ + L+ + P F L +
Sbjct: 71 GVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVT 130
Query: 214 VRFFLGFFCVSIVFSGFVLCMELVGGKW--LTIMGV---------MYLFPVPVGYIA--- 259
+R GF VGG+W ++ V Y V VGY
Sbjct: 131 LRAIQGF---------------AVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLL 175
Query: 260 -----ISGIAYYSHNWRLLQWVITIPTIFFLTL----WWI---MPESP 295
+S I+ + + + L W IP +F + L W+ M ES
Sbjct: 176 LSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESA 223
>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter.
This subfamily belongs to the major facilitator family.
Members include the oxalate/formate antiporter of
Oxalobacter formigenes, where one substrate is
decarboxylated in the cytosol into the other to consume
a proton and drive an ion gradient [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 377
Score = 29.3 bits (66), Expect = 5.7
Identities = 28/135 (20%), Positives = 43/135 (31%), Gaps = 5/135 (3%)
Query: 158 SLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWF-ELYLVVRF 216
LA + + G F G +SDK GR+K + V + P ++ +
Sbjct: 243 VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATV 302
Query: 217 FLGFFCVSIVFSGFV-LCMELVGGKWLTIM-GVMYLFPVPVGYIA--ISGIAYYSHNWRL 272
L FF S F L ++ G G +Y G I+ A +
Sbjct: 303 ALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEY 362
Query: 273 LQWVITIPTIFFLTL 287
V + L L
Sbjct: 363 TFIVTGAFALTSLAL 377
>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport
and metabolism].
Length = 417
Score = 29.2 bits (66), Expect = 5.8
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 10/73 (13%)
Query: 159 LAEMVFLLGVAFGGFF---SGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFE------ 209
A ++ L G G +SD+ G ++ + V + L+++
Sbjct: 255 TAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSF 314
Query: 210 -LYLVVRFFLGFF 221
+++ V L F
Sbjct: 315 VVFVAVFLALFVF 327
>gnl|CDD|219227 pfam06912, DUF1275, Protein of unknown function (DUF1275). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown although a few members are
thought to be membrane proteins.
Length = 206
Score = 28.3 bits (64), Expect = 8.1
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 163 VFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFFC 222
F+LG A G L+ + R+ + L+ + VL + A+ P L+ L F
Sbjct: 58 AFVLGAALAGLLIRLLRRRRLRRWLAL-LLLLEAVLLLAAALLPLALPPLIAIALLAFAM 116
>gnl|CDD|235781 PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 424
Score = 28.8 bits (65), Expect = 9.2
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 392 TII-SGIVEFPAIVISIFILLKMGRRR------PLCLTTLGAGLACLMTLGF 436
TII SG+ FPAI ++ L G RR P LT + AG + GF
Sbjct: 112 TIIGSGVGGFPAIAEAVRTLDSRGPRRLSPFTIPSFLTNMAAGHVS-IRYGF 162
>gnl|CDD|212064 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 477
Score = 28.6 bits (65), Expect = 9.6
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 254 PVGYIAISGIAYYSHNWRLLQWVITIPTIFFLTLWWIMP 292
+ ++AI AY + +W + IP L ++ +P
Sbjct: 56 SITFLAIPAKAY-ATDWNYFVGNLAIPLAAPLAAYFFIP 93
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.142 0.447
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,435,005
Number of extensions: 2991819
Number of successful extensions: 4865
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4745
Number of HSP's successfully gapped: 358
Length of query: 565
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 463
Effective length of database: 6,413,494
Effective search space: 2969447722
Effective search space used: 2969447722
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (27.6 bits)