RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17080
(565 letters)
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 59.3 bits (144), Expect = 2e-09
Identities = 52/410 (12%), Positives = 114/410 (27%), Gaps = 93/410 (22%)
Query: 164 FLLGVAFGGFFSGLVSDKFGRKK----ALMGSLVFQLVLGVLVAISPWFELYLVVRFFLG 219
+ F F G VSD+ + L+ + L +G + + + V+ F G
Sbjct: 71 ISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCG 130
Query: 220 FF-------CVSIVFSGFVLCMELVGGKWL------TIMGVM----YLFPVPVGYIAISG 262
+F C + W I+ V + + + G
Sbjct: 131 WFQGMGWPPCGRTM------------VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178
Query: 263 IAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKL 322
+A+++ W ++ I + M + +E D + +
Sbjct: 179 MAWFND-WHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQ- 236
Query: 323 PLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYII---------WFSVYLV 373
+ K++ + + L+ I+ + W YL
Sbjct: 237 ----------------ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLK 280
Query: 374 -YYGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFI------LLKMGRRRPLCLTTLGA 426
L + E+ I ++ + + R
Sbjct: 281 EVKH--FALDKSS-------WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331
Query: 427 GLA-CLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTK-------MRNLG- 477
+A + + A + + +V F I ++I ++ EL P K L
Sbjct: 332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG 391
Query: 478 --VGASSVPAGVALILIPYLWHMQSINIHFPMGLLGVVGVLGGLSVLLLP 525
G+ + A V + + W M ++G + L ++++
Sbjct: 392 YLGGSVAASAIVGYTVDFFGWDG------GFMVMIGGSILAVILLIVVMI 435
Score = 38.5 bits (90), Expect = 0.005
Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 19/150 (12%)
Query: 162 MVFLLGVAFGGFFSGLVSDKFGRKK-----ALMGSLVFQLVLGVLVAISPWFELYLVVRF 216
++ G G +SDK R +LV + + + + ++
Sbjct: 295 FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMI 354
Query: 217 FLGFFCVSIVFSGFVLCMELVGGKWL-TIMGVMYLF---------PVPVGYIAISGIAYY 266
+GF V + +EL K T G LF VGY + ++
Sbjct: 355 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT----VDFF 410
Query: 267 SHNWRLLQWVITIPTIFFLTLWWIMPESPR 296
+ + + L + ++ E R
Sbjct: 411 GWDGGFMVMIGGSILAVILLIVVMIGEKRR 440
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 50.3 bits (121), Expect = 7e-07
Identities = 24/141 (17%), Positives = 51/141 (36%), Gaps = 14/141 (9%)
Query: 163 VFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFFLGFF- 221
+LL F G +SD+ GR+ ++ + ++ ++ + + + G
Sbjct: 43 AYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGT 102
Query: 222 CVSIVFSGFVLCMELVGGKWLT-----IMGVMYLFPV--PVGYIAISGIAYYSHNWRLLQ 274
V V + L +L L + + + P+ P+ I G+ NWR
Sbjct: 103 GVGGVMA-RTLPRDLYERTQLRHANSLLNMGILVSPLLAPL----IGGLLDTMWNWRACY 157
Query: 275 WVITIPTIF-FLTLWWIMPES 294
+ + ++ MPE+
Sbjct: 158 LFLLVLCAGVTFSMARWMPET 178
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 1e-04
Identities = 85/488 (17%), Positives = 144/488 (29%), Gaps = 167/488 (34%)
Query: 15 VSTQTDPYTPDVPEDVINSAIGDFGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQDFWC 74
VS+ +P + V+N + +F +L +I H A +
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFE------NCYLEGNDI----HALAAKLLQENDT--- 114
Query: 75 TIPASLSTLTLDQWKN---LSSISGVPYNPC------------------------NILD- 106
T+ + + KN ++ P++ N D
Sbjct: 115 TLVKTKELI-----KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY 169
Query: 107 LD-----YSLPYSTLLN--IRRDVTAVRPCLQWTYDSSS-FGHTI-ISEW---------- 147
+ Y Y L+ I+ + ++ T D+ F + I EW
Sbjct: 170 FEELRDLYQT-YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 148 DLVCSN------SSLESLAE-MVFL--LGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVL 198
D + S + LA +V LG G S L G + LV
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG-ATGHSQG--------LVT 279
Query: 199 GVLVAISP-WFELY------LVVRFFLGFFC------VSIVFSGFVLCMELVGGK---WL 242
V +A + W + + V FF+G C S+ S +E G L
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 243 TIMGV-------------MYLFPVPVGYIAISGIAYYSHNWRLLQWVITIPTIFFLTLWW 289
+I + +L I++ N V++ P
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISL-------VNGA-KNLVVSGP--------- 382
Query: 290 IMPESPRWLVSMGRNKEAMKILGDAAK--FNSRK-------LPLNL---EKLLKESVLST 337
P+S L R +A L D ++ F+ RK LP+ LL +
Sbjct: 383 --PQSLYGLNLTLRKAKAPSGL-DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI 439
Query: 338 NQDVGKK---VQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSNIGGDVYLNTII 394
N+D+ K D+ + P VY + G +L + G + I+
Sbjct: 440 NKDLVKNNVSFNAKDI-QIP---------------VYDTFDG--SDLRVLSGSI-SERIV 480
Query: 395 SGIVEFPA 402
I+ P
Sbjct: 481 DCIIRLPV 488
Score = 43.5 bits (102), Expect = 2e-04
Identities = 83/570 (14%), Positives = 145/570 (25%), Gaps = 223/570 (39%)
Query: 47 LFLSLLNIPCTWHIFALTFQGASQ---DFWCTIPASLSTLTLDQWKNLSSI--------- 94
L LS ++ + +F ASQ F +P D ++
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADD--EPTTPAELVGKFLG 66
Query: 95 -------SGVPYNPCNILDL-------DY-------SLPYSTLLNIRRDVTAVRPCLQWT 133
+L+L Y +L L + + ++
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 134 YDSSSFGHTIISEWDLVCSNSSL-ESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSL 192
+ + SNS+L ++ E L FGG
Sbjct: 127 ITARIMAKRPFDKK----SNSALFRAVGEGNAQLVAIFGG-------------------- 162
Query: 193 VFQLVLGVLVAISPWF----ELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVM 248
Q G +F +LY +G I FS L EL+
Sbjct: 163 --Q---G---NTDDYFEELRDLYQTYHVLVGDL---IKFSAETLS-ELIRT--------- 201
Query: 249 YLFPVPVGYIAISGIAYYSHNWRLLQWV---ITIPTIFFLTLWWIMPESPRWLVSMGRNK 305
+ ++ +L+W+ P +L P +S
Sbjct: 202 ----------TLDAEKVFTQGLNILEWLENPSNTPDKDYLL------SIP---ISC---- 238
Query: 306 EAMKILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYI 365
PLI +I Y+
Sbjct: 239 ------------------------------------------------PLIGVIQLAHYV 250
Query: 366 IWFSVYLVYYGLVLNLSNIGGDVYLNTIISGIVEFPAIVISI------F--ILLKMGRRR 417
+ + G + S + G G+V A+ I+ F + K
Sbjct: 251 VTAKLLGFTPGEL--RSYLKG---ATGHSQGLV--TAVAIAETDSWESFFVSVRKA---- 299
Query: 418 PLCLTTL-GAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNL 476
+T L G+ C P + ++ S + + E P+ M L
Sbjct: 300 ---ITVLFFIGVRCYEA---YPNT------------SLPPSILEDSLENNEGVPSPM--L 339
Query: 477 GVGASSVPAGVALILIPYLWHMQSINIHFPMGL---LGVV-G----VLGGLSVLLLPDTT 528
+ + + + ++ N H P G + +V G V+ G L
Sbjct: 340 SI------SNLTQEQV--QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL----Y 387
Query: 529 GLADNLHQLENDVPI-QTPLVSTPIKRRKL 557
GL L + + + Q+ P RKL
Sbjct: 388 GLNLTLRKAKAPSGLDQS---RIPFSERKL 414
Score = 39.6 bits (92), Expect = 0.003
Identities = 48/249 (19%), Positives = 78/249 (31%), Gaps = 89/249 (35%)
Query: 16 STQTDPYT---PDVPEDVINSAIGD-------FGKWQFQLTLFLSLLN--IPCTWHIF-A 62
+ P T P + ED + + G Q Q+ +++ N +P + +
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 63 LTFQGASQDFWCT-IPASLSTL-----------TLDQWKNLSSISGVPYN---PCNILDL 107
L GA + P SL L LDQ + +P++
Sbjct: 370 L-VNGAKN-LVVSGPPQSLYGLNLTLRKAKAPSGLDQSR-------IPFSERKL--KFSN 418
Query: 108 DY---SLPY-STLLN-----IRRDVTAVRPCLQWTYDSSSFG----HTIISEWDL-VCSN 153
+ + P+ S LL I +D+ ++++ T DL V S
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLVKN----NVSFNAKDIQIPVYDTFDGS-DLRVLSG 473
Query: 154 SSLESLAEMVFLLGV--------------AFG-GFFSGLVSDKFGRKKALMGSLVFQLVL 198
S E + + + L V FG G SGL G L +
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL------------GVLTHRNKD 521
Query: 199 G----VLVA 203
G V+VA
Sbjct: 522 GTGVRVIVA 530
Score = 31.9 bits (72), Expect = 0.69
Identities = 47/220 (21%), Positives = 73/220 (33%), Gaps = 72/220 (32%)
Query: 20 DPY-TPDVPEDVINSAIGDFGKWQFQLTLFLSLLNI----P--CTWHIF----------- 61
D Y T +DV N A F+ T S+L+I P T H F
Sbjct: 1634 DLYKTSKAAQDVWNRA-----DNHFKDTYGFSILDIVINNPVNLTIH-FGGEKGKRIREN 1687
Query: 62 --ALTFQGASQDFWCTIPASLSTLTLDQWKNLSSISGVPYNPCNILDL-DYSLP------ 112
A+ F+ L T + + N S S + +L ++ P
Sbjct: 1688 YSAMIFETIVD-------GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 113 YSTLLNIRRDVTAVRPCLQWTYDSSSF-GHTIIS--EWD-LVCSNS--SLESLAEMVFLL 166
+ +++ + P ++F GH S E+ L S+ESL E+VF
Sbjct: 1741 KAAFEDLKSK--GLIP------ADATFAGH---SLGEYAALASLADVMSIESLVEVVFYR 1789
Query: 167 GVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISP 206
G+ D+ GR M +AI+P
Sbjct: 1790 GMTMQVAVPR---DELGRSNYGM------------IAINP 1814
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 40.7 bits (95), Expect = 0.001
Identities = 55/377 (14%), Positives = 108/377 (28%), Gaps = 43/377 (11%)
Query: 163 VFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAI--------SPWFELYLVV 214
L GL+SDK G +K L+ + LV+ I +V
Sbjct: 51 AISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVG 110
Query: 215 RFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIA---ISGIAYYSHNWR 271
+LGF + + ++ G +F VG+ I GI + +N
Sbjct: 111 GIYLGFCFNAGAPAVEAFIEKVSRRSNFE-FGRARMF-GCVGWALGASIVGIMFTINNQF 168
Query: 272 LLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKLLK 331
+ I + L++ ++P + P
Sbjct: 169 VFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQP-------- 220
Query: 332 ESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSNIGGDVY-L 390
LW L + Y ++ + ++ G V+
Sbjct: 221 -----------------KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGY 263
Query: 391 NTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVG 450
T + ++ + + I+ ++G + L L + + FA + + L +
Sbjct: 264 VTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIG-SSFATSALEVVILKTLH 322
Query: 451 KFAISSSNVIIPIYTAELFPTKMRNLGVG-ASSVPAGVALILIPYL--WHMQSINIHFPM 507
F + V Y F + +A+I + L +SI
Sbjct: 323 MFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAY 382
Query: 508 GLLGVVGVLGGLSVLLL 524
+LG+V + L +
Sbjct: 383 LVLGLVALGFTLISVFT 399
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 0.001
Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 47/136 (34%)
Query: 45 LTLFLSLLNIP--------CTWHIFALTFQGASQ-------DFW---------CTIPASL 80
+L L L+ T + L+ S D W I +SL
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 81 STLTLDQWKNLSSISGVPYNPCNILDLDYSLPYSTLLNIRRDVTAVRPCLQWTYDSSSFG 140
+ L +++ + ++ ++ +P L L W S
Sbjct: 364 NVLEPAEYRKM-------FDRLSVFPPSAHIPTILL------------SLIWFDVIKSDV 404
Query: 141 HTIISEWDLVCSNSSL 156
++++ SL
Sbjct: 405 MVVVNK----LHKYSL 416
Score = 38.3 bits (88), Expect = 0.007
Identities = 74/462 (16%), Positives = 129/462 (27%), Gaps = 143/462 (30%)
Query: 38 FGKWQFQLTLFLSLLNIPCTWHIFALTFQGASQD--FW-----CTIPAS----LSTLTLD 86
GK + L + + Q FW C P + L L
Sbjct: 161 SGKT----WVALDVCL--------SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 87 QWKNLSSISGVPYN-PCNILDLDYSL-------PYSTLLNIRRDVTAVRPCLQWTYDSSS 138
N +S S N I + L PY L + +V +++ +
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-----QNAKAWNAFN 263
Query: 139 FGHTIISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVL 198
I L+ + + + FL S + SL L
Sbjct: 264 LSCKI-----LLTTRFK--QVTD--FLSAATTTHISLDHHSMTLTPDEVK--SL-LLKYL 311
Query: 199 GV--------LVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMY- 249
++ +P L ++ + V C +L TI+
Sbjct: 312 DCRPQDLPREVLTTNP-RRLSIIAESIRDGLATWDNWK-HVNCDKL-----TTIIESSLN 364
Query: 250 -LFPVPVGYIAISGIAYYSHNWRLLQWVI-----TIPTIFFLTLWWIMPESPRWLVSMGR 303
L P A Y + L + IPTI +W+ + +S
Sbjct: 365 VLEP-----------AEYRKMFDRL--SVFPPSAHIPTILLSLIWFDVIKS--------- 402
Query: 304 NKEAMKILGDAAKFNSRKLPLNLEKLLKESVLSTN---QDVGKKV-QVMDLWRTPLIRLI 359
+ M ++ K + L +EK KES +S ++ K+ L R ++
Sbjct: 403 --DVMVVV---NKLHKYSL---VEKQPKESTISIPSIYLELKVKLENEYALHR----SIV 450
Query: 360 SFVQYII-----------------WFSVYLVYYGLVLNLSNIGGDVYLNTIISGIVEFPA 402
Y I ++S ++ ++ L NI + F
Sbjct: 451 D--HYNIPKTFDSDDLIPPYLDQYFYS-HIGHH-----LKNIEHPERMT-------LFRM 495
Query: 403 IVISI-FILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFIT 443
+ + F+ K+ R G+ L L L F +I
Sbjct: 496 VFLDFRFLEQKI-RHDSTAWNASGSILNTLQQLKFY-KPYIC 535
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
transport protein; HET: BNG; 3.14A {Escherichia coli}
PDB: 3o7p_A*
Length = 438
Score = 33.4 bits (76), Expect = 0.20
Identities = 43/329 (13%), Positives = 96/329 (29%), Gaps = 33/329 (10%)
Query: 142 TIISEWDLVCSNSSLES-LAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLV--- 197
++ ++ + ++ ++ L + F G +G++ K K ++ L +
Sbjct: 47 ILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAA 106
Query: 198 LGVLVAISPWFELYLVVRFFLGFFCVSIVFSGFVLCMELVGGKW----LTIMGVMY---- 249
L A + L+LV F + + + L L +
Sbjct: 107 LFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGA 166
Query: 250 -LFPVPVGYIAISGIAYYSHNWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAM 308
+ V + +S + + S + + + + +P ++
Sbjct: 167 IIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQ--TPYMIIVAI------ 218
Query: 309 KILGDAAKFNSRKLPLNLEKLLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYI--- 365
+L A K P ++ + + L R R Q+
Sbjct: 219 -VLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSR-----LARIRHWRWAVLAQFCYVG 272
Query: 366 --IWFSVYLVYYGLVLNLSNIGGDVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTT 423
YL+ Y + G + + F +++ + + L
Sbjct: 273 AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYA 332
Query: 424 LGAGLACLMTLGFAPGSFITISLAMVGKF 452
L A CL++ FA G I+L + F
Sbjct: 333 LIAMALCLISA-FAGGHVGLIALTLCSAF 360
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.41
Identities = 4/16 (25%), Positives = 6/16 (37%), Gaps = 1/16 (6%)
Query: 21 PYTPD-VPEDVINSAI 35
Y D P I + +
Sbjct: 31 LYADDSAPALAIKATM 46
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium; 1.88A {Lactobacillus acidophilus}
Length = 484
Score = 31.3 bits (72), Expect = 0.86
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 198 LGVLVAISPW-FELYLVVRFF 217
GV++A PW F LY V+R F
Sbjct: 124 TGVIMACEPWNFPLYQVIRVF 144
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST
genomics of infectious diseases, oxidoreductase, csgid;
1.85A {Salmonella typhimurium} PDB: 3efv_A
Length = 462
Score = 31.0 bits (71), Expect = 1.1
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 198 LGVLVAISPW-FELYLVVRFF 217
LGV++AI PW F L+ V+R
Sbjct: 127 LGVILAIMPWNFPLWQVLRGA 147
>3iez_A RAS GTPase-activating-like protein iqgap2; structural genomics
consortium, SGC, alternative splicing,
calmodulin-binding, phosphoprotein; 1.50A {Homo sapiens}
Length = 114
Score = 29.0 bits (65), Expect = 1.5
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 440 SFITISLAMVGKFAISSSNVIIPIYTAEL 468
+F I+ VG F + S + + + +L
Sbjct: 50 TFDIIATEDVGIFDVRSKFLGVEMEKVQL 78
>3tij_A NUPC family protein; membrane transporter, nucleoside transporter,
drug transport uridine, nucleosides, membrane protein;
HET: URI DMU; 2.44A {Vibrio cholerae}
Length = 424
Score = 30.4 bits (69), Expect = 1.8
Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 26/135 (19%)
Query: 156 LESLAEMVFLLGVAFGGFFSGLVSDKFGRK----KALMGSLVFQLVLGVLVAISPWFELY 211
SL M LLG+A L+S RK + + G+ Q LG + PW
Sbjct: 10 FMSLIGMAVLLGIAV------LLSSN--RKAINLRTVGGAFAIQFSLGAFILYVPWG--Q 59
Query: 212 LVVRFFLGFFCVSIVFS----GFVLCMELVGGKWLTIMGVMYLF-----PVPVGYIAISG 262
++R F I + F+ + G + G ++F P + + A+
Sbjct: 60 ELLRGFSDAVSNVINYGNDGTSFLFGGLVSGKMFEVFGGGGFIFAFRVLPTLIFFSALIS 119
Query: 263 IAYYSHNWRLLQWVI 277
+ YY ++QWVI
Sbjct: 120 VLYY---LGVMQWVI 131
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 28.5 bits (64), Expect = 7.2
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 476 LGVGASSVPAGVALILIPYLWHMQSINIHFPMG 508
L + + VP +I ++ P G
Sbjct: 163 LSLKSDEVPVEEVFEIIENMYRFGG--TGIPEG 193
>3qsl_A Putative exported protein; unknown, structural genomics,
PSI-biology, midwest center FO structural genomics,
MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella
bronchiseptica}
Length = 346
Score = 28.0 bits (62), Expect = 8.9
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 411 LKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAMVGKFAISSSNVIIPIYTAE 467
+ + RR L L ++ + A VG + +P+ AE
Sbjct: 1 MSVTRRELLKLAGAAGAMSLAPAIVRAQKLEKAKVQIAVGGKPLIYY---LPLTIAE 54
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.142 0.447
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,701,182
Number of extensions: 527784
Number of successful extensions: 1032
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1016
Number of HSP's successfully gapped: 40
Length of query: 565
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 466
Effective length of database: 3,937,614
Effective search space: 1834928124
Effective search space used: 1834928124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.1 bits)