RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17080
         (565 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 68.2 bits (165), Expect = 8e-13
 Identities = 44/386 (11%), Positives = 110/386 (28%), Gaps = 36/386 (9%)

Query: 158 SLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPW----FELYLV 213
             A     +   F  F  G VSD+   +  L   L+    + + +   PW      +  V
Sbjct: 62  GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV 121

Query: 214 VRFFLGFFCVSIVFSGFVLCMELVGGKWLTIMGVMYLFPVPVGYIAISGI----AYYSHN 269
           + F  G+F            +     K    +  ++     VG      +      + ++
Sbjct: 122 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND 181

Query: 270 WRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEKL 329
           W    ++     I      + M         +   +E      D     + +        
Sbjct: 182 WHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQ-------- 233

Query: 330 LKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSNIGG--- 386
                    +   K++ +  +    L+  I+     ++   Y +       L  +     
Sbjct: 234 ---------ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFAL 284

Query: 387 -DVYLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGF----APGSF 441
                   +      P  ++  ++  K+ R            L  + T+ +    A    
Sbjct: 285 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPT 344

Query: 442 ITISLAMVGKFAISSSNVIIPIYTAELFPTKMRNLGVGASSVPAGVALILIPYL---WHM 498
           + +   +V  F I    ++I ++  EL P K      G + +   +   +       + +
Sbjct: 345 VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 404

Query: 499 QSINIHFPMGLLGVVGVLGGLSVLLL 524
                     ++    +L  + ++++
Sbjct: 405 DFFGWDGGFMVMIGGSILAVILLIVV 430


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 52.9 bits (125), Expect = 6e-08
 Identities = 44/379 (11%), Positives = 94/379 (24%), Gaps = 37/379 (9%)

Query: 158 SLAEMVFLLGVAFGGFFSGLVSDKFGRKKALMGSLVFQLVLGVLVAISPWFELYLVVRFF 217
            +      L         GL+SDK G +K L+  +   LV+     I  +  L       
Sbjct: 46  GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILV 105

Query: 218 LGFFCVSIVFSGFVLCMELV---------GGKWLTIMGVMYLFPVPVGYIAISGIAYYSH 268
                   +   F      V            +      M+         +I GI +  +
Sbjct: 106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTIN 165

Query: 269 NWRLLQWVITIPTIFFLTLWWIMPESPRWLVSMGRNKEAMKILGDAAKFNSRKLPLNLEK 328
           N  +         I  + L++   ++P                         + P     
Sbjct: 166 NQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQP----- 220

Query: 329 LLKESVLSTNQDVGKKVQVMDLWRTPLIRLISFVQYIIWFSVYLVYYGLVLNLSNIGGDV 388
                                 + +  +  +S    +        +              
Sbjct: 221 -------------------KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVF 261

Query: 389 YLNTIISGIVEFPAIVISIFILLKMGRRRPLCLTTLGAGLACLMTLGFAPGSFITISLAM 448
              T +  ++    +  +  I+ ++G +  L L      +  + +        + I   +
Sbjct: 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTL 321

Query: 449 VGKFAISSSNVIIPIYTAELFPTKMRNLGVG-ASSVPAGVALILIPYL--WHMQSINIHF 505
              F +    V    Y    F  +               +A+I +  L     +SI    
Sbjct: 322 HM-FEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQG 380

Query: 506 PMGLLGVVGVLGGLSVLLL 524
              +LG+V +   L  +  
Sbjct: 381 AYLVLGLVALGFTLISVFT 399


>d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related
           factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 78

 Score = 26.5 bits (58), Expect = 2.1
 Identities = 8/43 (18%), Positives = 20/43 (46%)

Query: 144 ISEWDLVCSNSSLESLAEMVFLLGVAFGGFFSGLVSDKFGRKK 186
           I++++   +  + + L ++   +G+   G   G   +K  R K
Sbjct: 36  IADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEKGPRAK 78


>d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter
           formigenes [TaxId: 847]}
          Length = 188

 Score = 27.3 bits (59), Expect = 4.1
 Identities = 8/74 (10%), Positives = 22/74 (29%), Gaps = 5/74 (6%)

Query: 234 MELVGG-----KWLTIMGVMYLFPVPVGYIAISGIAYYSHNWRLLQWVITIPTIFFLTLW 288
           +EL  G       L +  +  ++ V    I      +     R   +       +  ++ 
Sbjct: 1   VELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAGYAASIA 60

Query: 289 WIMPESPRWLVSMG 302
             +   P   +++ 
Sbjct: 61  GYIEGKPGVCLTVS 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.142    0.447 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,134,758
Number of extensions: 99603
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 14
Length of query: 565
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 475
Effective length of database: 1,171,896
Effective search space: 556650600
Effective search space used: 556650600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.4 bits)