BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17082
(104 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 47/75 (62%)
Query: 29 ARITYRVRVQCDLHYFNSTCTTFCRPRDDKFGHFTCDSNGDKVCIAGWKGTNCETAVCKE 88
I R V CD +Y+ C FCRPRDD FGH+ CD NG+K C+ GW G C A+C++
Sbjct: 11 GSIEGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRAICRQ 70
Query: 89 GCHPTHGKCDVPGLC 103
GC P HG C +PG C
Sbjct: 71 GCSPKHGSCKLPGDC 85
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 69 DKVCIAGWKGTNCETAVCKEGCHPTHGKCDVPG 101
DKV G+KG N + AV G +H +V G
Sbjct: 15 DKVQAQGFKGANVKVAVLDTGIQASHPDLNVVG 47
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 69 DKVCIAGWKGTNCETAVCKEGCHPTHGKCDVPG 101
DKV G+KG N + AV G +H +V G
Sbjct: 15 DKVQAQGFKGANVKVAVLDTGIQASHPDLNVVG 47
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 69 DKVCIAGWKGTNCETAVCKEGCHPTHGKCDVPG 101
DKV G+KG N + AV G +H +V G
Sbjct: 14 DKVQAQGFKGANVKVAVLDTGIQASHPDLNVVG 46
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 69 DKVCIAGWKGTNCETAVCKEGCHPTHGKCDVPG 101
DKV G+KG N + AV G +H +V G
Sbjct: 14 DKVQAQGFKGANVKVAVLDTGIQASHPDLNVVG 46
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 69 DKVCIAGWKGTNCETAVCKEGCHPTHGKCDVPG 101
DKV G+KG N + AV G +H +V G
Sbjct: 14 DKVQAQGFKGANVKVAVLDTGIQASHPDLNVVG 46
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 69 DKVCIAGWKGTNCETAVCKEGCHPTHGKCDVPG 101
DKV G+KG N + AV G +H +V G
Sbjct: 14 DKVQAQGFKGANVKVAVLDTGIQASHPDLNVVG 46
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 69 DKVCIAGWKGTNCETAVCKEGCHPTHGKCDVPG 101
DKV G+KG N + AV G +H +V G
Sbjct: 14 DKVQAQGFKGANVKVAVLDTGIQASHPDLNVVG 46
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 39 CDLHYFNSTCTTFCRPRDDKFGHFTC--DSNGDKVCIAGWKGTNCETAVCKEGCHP 92
C+LH F TC C ++ + C D G C GWKG C E CHP
Sbjct: 233 CELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCS-CATGWKGLQ-----CNEACHP 282
>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 463
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 18/88 (20%)
Query: 13 LLPSAEWHTLNHKGKTARITY----------RVRVQCDLHYFNSTCTTFCRPRDDKFGHF 62
+L S++ T H GK +I R VQ S C+ CR +
Sbjct: 351 ILSSSKSMTQTHNGKLYKIVDPKRPLMPEECRATVQ-PAQTLTSECSRLCR-------NG 402
Query: 63 TCDSNGDKVCIAGWKGTNCETAVCKEGC 90
C G C GW+G C TA C+ C
Sbjct: 403 YCTPTGKCCCSPGWEGDFCRTAKCEPAC 430
>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 457
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 18/88 (20%)
Query: 13 LLPSAEWHTLNHKGKTARITY----------RVRVQCDLHYFNSTCTTFCRPRDDKFGHF 62
+L S++ T H GK +I R VQ S C+ CR +
Sbjct: 351 ILSSSKSMTQTHNGKLYKIVDPKRPLMPEECRATVQ-PAQTLTSECSRLCR-------NG 402
Query: 63 TCDSNGDKVCIAGWKGTNCETAVCKEGC 90
C G C GW+G C TA C+ C
Sbjct: 403 YCTPTGKCCCSPGWEGDFCRTAKCEPAC 430
>pdb|3N00|A Chain A, Crystal Structure Of A Deletion Mutant Of Human Reverba
Ligand Binding Domain Bound With An Ncor Id1 Peptide
Determined To 2.60a
Length = 245
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 2 RPIEEASFSGILLPSAEWHTLNHKGKTARITYRVRVQ 38
RP+E + F+ +LL + TLN+ +++RV Q
Sbjct: 209 RPLETSRFTKLLLKLPDLRTLNNMHSEKLLSFRVDAQ 245
>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
Length = 458
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 18/88 (20%)
Query: 13 LLPSAEWHTLNHKGKTARITY----------RVRVQCDLHYFNSTCTTFCRPRDDKFGHF 62
+L S++ T H GK +I R VQ S C+ CR +
Sbjct: 351 ILSSSKSMTQTHNGKLYKIVDPKRPLMPEECRATVQ-PAQTLTSECSRLCR-------NG 402
Query: 63 TCDSNGDKVCIAGWKGTNCETAVCKEGC 90
C G C GW+G C TA C+ C
Sbjct: 403 YCTPTGKCCCSPGWEGDFCRTAKCEPAC 430
>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
Length = 481
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 18/88 (20%)
Query: 13 LLPSAEWHTLNHKGKTARITY----------RVRVQCDLHYFNSTCTTFCRPRDDKFGHF 62
+L S++ T H GK +I R VQ S C+ CR +
Sbjct: 372 ILSSSKSMTQTHNGKLYKIVDPKRPLMPEECRATVQ-PAQTLTSECSRLCR-------NG 423
Query: 63 TCDSNGDKVCIAGWKGTNCETAVCKEGC 90
C G C GW+G C TA C+ C
Sbjct: 424 YCTPTGKCCCSPGWEGDFCRTAKCEPAC 451
>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
pdb|3HO4|B Chain B, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
Length = 481
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 18/88 (20%)
Query: 13 LLPSAEWHTLNHKGKTARITY----------RVRVQCDLHYFNSTCTTFCRPRDDKFGHF 62
+L S++ T H GK +I R VQ S C+ CR +
Sbjct: 372 ILSSSKSXTQTHNGKLYKIVDPKRPLXPEECRATVQ-PAQTLTSECSRLCR-------NG 423
Query: 63 TCDSNGDKVCIAGWKGTNCETAVCKEGC 90
C G C GW+G C TA C+ C
Sbjct: 424 YCTPTGKCCCSPGWEGDFCRTAKCEPAC 451
>pdb|1NTG|A Chain A, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
pdb|1NTG|B Chain B, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
pdb|1NTG|C Chain C, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
pdb|1NTG|D Chain D, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
Length = 172
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 17/44 (38%)
Query: 52 CRPRDDKFGHFTCDSNGDKVCIAGWKGTNCETAVCKEGCHPTHG 95
+P+ F D + CIA WK TN T + C G
Sbjct: 123 LKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKG 166
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 11/67 (16%)
Query: 38 QCDLHYFNSTCTTFCRPRDDKFGHFTCDSNGDKVCIAGWKGTNCETAVCKEGCHPTHGKC 97
QC++ S C CR G C C G++G C VC+ GC HG C
Sbjct: 241 QCEI----SKCPQPCRNGGKCIGKSKCK------CSKGYQGDLCSKPVCEPGCG-AHGTC 289
Query: 98 DVPGLCE 104
P C+
Sbjct: 290 HEPNKCQ 296
>pdb|4F1J|A Chain A, Crystal Structure Of The Mg2+ Loaded Vwa Domain Of
Plasmodium Falciparum Trap Protein
pdb|4F1J|B Chain B, Crystal Structure Of The Mg2+ Loaded Vwa Domain Of
Plasmodium Falciparum Trap Protein
pdb|4F1K|A Chain A, Crystal Structure Of The Mg2+ Free Vwa Domain Of
Plasmodium Falciparum Trap Protein
pdb|4F1K|B Chain B, Crystal Structure Of The Mg2+ Free Vwa Domain Of
Plasmodium Falciparum Trap Protein
Length = 203
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 68 GDKVCIAGW-KGTNCETAVCKEGCHPTHGKCDV 99
G K+ + G +G N GCHP+ GKC++
Sbjct: 143 GVKIAVFGIGQGINVAFNRFLVGCHPSDGKCNL 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.489
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,580,588
Number of Sequences: 62578
Number of extensions: 133749
Number of successful extensions: 267
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 48
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)