Query psy17082
Match_columns 104
No_of_seqs 158 out of 828
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 21:24:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01414 DSL: Delta serrate li 99.8 8.9E-21 1.9E-25 115.9 0.1 63 19-81 1-63 (63)
2 smart00051 DSL delta serrate l 99.8 4E-19 8.6E-24 108.5 5.4 63 19-81 1-63 (63)
3 KOG1225|consensus 99.2 1.1E-11 2.4E-16 101.2 5.8 68 32-104 262-330 (525)
4 KOG1225|consensus 98.9 2.9E-09 6.3E-14 87.2 5.8 64 36-104 235-299 (525)
5 KOG4289|consensus 98.3 6.8E-07 1.5E-11 79.9 4.4 63 34-98 1221-1294(2531)
6 PF07974 EGF_2: EGF-like domai 98.2 1E-06 2.2E-11 46.9 2.5 25 57-81 7-32 (32)
7 KOG1226|consensus 98.0 5.6E-06 1.2E-10 70.2 4.7 66 35-103 525-607 (783)
8 KOG1226|consensus 97.7 4.3E-05 9.4E-10 65.0 4.7 64 33-98 564-636 (783)
9 PF12661 hEGF: Human growth fa 97.4 4.5E-05 9.8E-10 32.9 0.3 12 70-81 2-13 (13)
10 KOG1219|consensus 97.1 0.00072 1.6E-08 63.6 4.8 65 33-99 3884-3958(4289)
11 KOG4260|consensus 96.8 0.0013 2.8E-08 50.8 3.7 49 34-83 127-183 (350)
12 PF07974 EGF_2: EGF-like domai 95.8 0.0084 1.8E-07 31.7 2.1 24 25-48 9-32 (32)
13 cd00055 EGF_Lam Laminin-type e 95.6 0.01 2.2E-07 33.9 2.2 22 62-83 12-34 (50)
14 smart00180 EGF_Lam Laminin-typ 94.7 0.051 1.1E-06 30.6 3.3 22 62-83 11-33 (46)
15 PF00053 Laminin_EGF: Laminin 94.7 0.0081 1.8E-07 34.0 -0.1 25 62-88 11-36 (49)
16 KOG1218|consensus 94.6 0.074 1.6E-06 39.8 4.9 56 38-98 136-195 (316)
17 PF00008 EGF: EGF-like domain 93.8 0.029 6.2E-07 29.3 0.9 23 58-80 6-32 (32)
18 KOG1217|consensus 93.8 0.16 3.4E-06 39.3 5.3 69 30-99 288-372 (487)
19 KOG3607|consensus 93.7 0.044 9.5E-07 47.1 2.2 28 57-84 631-658 (716)
20 KOG0994|consensus 93.4 0.064 1.4E-06 48.5 2.7 54 29-83 1078-1147(1758)
21 KOG4289|consensus 92.6 0.15 3.2E-06 47.3 3.9 47 33-84 1704-1755(2531)
22 smart00181 EGF Epidermal growt 89.5 0.52 1.1E-05 24.0 2.8 14 69-82 21-35 (35)
23 cd00053 EGF Epidermal growth f 89.0 0.66 1.4E-05 23.0 2.9 21 61-81 11-35 (36)
24 PF04863 EGF_alliinase: Alliin 88.7 0.24 5.1E-06 29.4 1.1 28 57-84 18-52 (56)
25 KOG1219|consensus 88.5 0.46 1E-05 46.1 3.3 55 27-82 3916-3977(4289)
26 smart00179 EGF_CA Calcium-bind 88.1 0.74 1.6E-05 23.7 2.8 14 69-82 25-39 (39)
27 cd00054 EGF_CA Calcium-binding 87.6 0.53 1.2E-05 23.8 2.0 14 69-82 25-38 (38)
28 KOG1217|consensus 87.2 1.2 2.6E-05 34.3 4.5 52 33-84 150-208 (487)
29 KOG0994|consensus 85.8 0.94 2E-05 41.4 3.6 52 32-83 1034-1099(1758)
30 smart00051 DSL delta serrate l 84.5 1.1 2.5E-05 26.9 2.6 31 70-102 19-51 (63)
31 PHA02887 EGF-like protein; Pro 83.9 0.87 1.9E-05 31.1 2.0 23 61-83 96-123 (126)
32 KOG1218|consensus 80.3 5.2 0.00011 29.8 5.3 46 37-83 92-139 (316)
33 PF12955 DUF3844: Domain of un 79.2 1.3 2.7E-05 29.5 1.5 29 56-84 13-62 (103)
34 PHA02887 EGF-like protein; Pro 76.5 1.7 3.7E-05 29.7 1.5 16 35-50 108-123 (126)
35 KOG1214|consensus 76.2 3.9 8.4E-05 36.5 4.0 46 34-80 808-860 (1289)
36 PF01683 EB: EB module; Inter 75.1 3.4 7.3E-05 23.2 2.4 29 42-77 16-46 (52)
37 KOG3512|consensus 71.9 4 8.6E-05 34.1 2.9 24 60-83 405-429 (592)
38 PHA03099 epidermal growth fact 71.7 3.1 6.8E-05 28.9 1.9 17 68-84 67-83 (139)
39 PF12947 EGF_3: EGF domain; I 65.0 2.7 5.9E-05 22.5 0.4 19 29-47 15-33 (36)
40 PHA03099 epidermal growth fact 64.5 4.3 9.3E-05 28.2 1.4 18 34-51 66-83 (139)
41 PF12662 cEGF: Complement Clr- 62.9 14 0.0003 18.1 2.8 12 34-45 1-12 (24)
42 KOG1214|consensus 61.4 15 0.00032 33.1 4.4 71 27-98 749-842 (1289)
43 KOG1836|consensus 58.5 6.7 0.00015 37.2 2.0 53 31-83 370-429 (1705)
44 PF09064 Tme5_EGF_like: Thromb 55.8 11 0.00024 20.2 1.8 12 67-78 17-28 (34)
45 KOG1836|consensus 51.3 14 0.00031 35.1 2.9 46 37-83 697-760 (1705)
46 PF00954 S_locus_glycop: S-loc 43.5 38 0.00083 21.7 3.3 21 58-78 86-108 (110)
47 PF07645 EGF_CA: Calcium-bindi 33.2 27 0.00058 18.7 1.1 19 26-44 16-34 (42)
48 KOG1388|consensus 32.3 21 0.00046 26.7 0.8 46 38-84 80-128 (217)
49 PF04724 Glyco_transf_17: Glyc 28.7 34 0.00074 27.2 1.5 17 68-84 35-54 (356)
50 PF01826 TIL: Trypsin Inhibito 24.6 43 0.00092 18.7 1.0 8 70-77 35-42 (55)
51 PF02977 CarbpepA_inh: Carboxy 23.6 43 0.00093 19.1 0.8 21 45-65 5-25 (46)
52 KOG3509|consensus 20.4 1.7E+02 0.0037 26.7 4.3 56 26-82 418-479 (964)
No 1
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=99.79 E-value=8.9e-21 Score=115.85 Aligned_cols=63 Identities=56% Similarity=1.371 Sum_probs=31.7
Q ss_pred ceeeeecCceeEEEecEEEecCCCCCCCCCCCCCCCCCCCCCceEECCCCCeecCCCCCCCCC
Q psy17082 19 WHTLNHKGKTARITYRVRVQCDLHYFNSTCTTFCRPRDDKFGHFTCDSNGDKVCIAGWKGTNC 81 (104)
Q Consensus 19 W~~~~~~~~~~~l~~~~r~~C~~g~~G~~C~~~C~~~~~~~g~g~C~~~G~c~C~~Gw~G~~C 81 (104)
|++..+.+..+.|++++|++|+++|||+.|+++|.|+++..+||+|+++|..+|.+||+|++|
T Consensus 1 W~~~~~~~~~~~l~~~~rv~C~~nyyG~~C~~~C~~~~d~~ghy~Cd~~G~~~C~~Gw~G~~C 63 (63)
T PF01414_consen 1 WNTDTHIGNRTSLSYRIRVVCDENYYGPNCSKFCKPRDDSFGHYTCDSNGNKVCLPGWTGPNC 63 (63)
T ss_dssp ----------------------TTEETTTT-EE---EEETTEEEEE-SS--EEE-TTEESTTS
T ss_pred CccccccCceeEEEEEEEEECCCCCCCccccCCcCCCcCCcCCcccCCCCCCCCCCCCcCCCC
Confidence 889999999999999999999999999999999999888889999999999999999999988
No 2
>smart00051 DSL delta serrate ligand.
Probab=99.78 E-value=4e-19 Score=108.54 Aligned_cols=63 Identities=51% Similarity=1.197 Sum_probs=60.3
Q ss_pred ceeeeecCceeEEEecEEEecCCCCCCCCCCCCCCCCCCCCCceEECCCCCeecCCCCCCCCC
Q psy17082 19 WHTLNHKGKTARITYRVRVQCDLHYFNSTCTTFCRPRDDKFGHFTCDSNGDKVCIAGWKGTNC 81 (104)
Q Consensus 19 W~~~~~~~~~~~l~~~~r~~C~~g~~G~~C~~~C~~~~~~~g~g~C~~~G~c~C~~Gw~G~~C 81 (104)
|++..+.+..+.|.+++|.+|+++|||..|+++|.|+++..+|++|++.|.|+|.+||+|++|
T Consensus 1 w~~~~~~~~~~~l~~~~rv~C~~~~yG~~C~~~C~~~~d~~~~~~Cd~~G~~~C~~Gw~G~~C 63 (63)
T smart00051 1 WSTDLHIGGRTFLEYQIRVTCDENYYGEGCNKFCRPRDDFFGHYTCDENGNKGCLEGWMGPYC 63 (63)
T ss_pred CcccccccccceEEEEEEeeCCCCCcCCccCCEeCcCccccCCccCCcCCCEecCCCCcCCCC
Confidence 788888899999999999999999999999999999999999999999999999999999987
No 3
>KOG1225|consensus
Probab=99.24 E-value=1.1e-11 Score=101.25 Aligned_cols=68 Identities=29% Similarity=0.697 Sum_probs=60.2
Q ss_pred EecEEEecCCCCCCCCCCC-CCCCCCCCCCceEECCCCCeecCCCCCCCCCCCCccCCCCcCCCceeCCCCeeC
Q psy17082 32 TYRVRVQCDLHYFNSTCTT-FCRPRDDKFGHFTCDSNGDKVCIAGWKGTNCETAVCKEGCHPTHGKCDVPGLCE 104 (104)
Q Consensus 32 ~~~~r~~C~~g~~G~~C~~-~C~~~~~~~g~g~C~~~G~c~C~~Gw~G~~C~~~~C~~~C~~~~G~C~~p~~C~ 104 (104)
-+..+|.|++||+|.+|+. .|.. + +++|+.|. +|+|+|.+||+|.+|+.+.|+.+|++ ||.|+ +++|+
T Consensus 262 c~~G~CIC~~Gf~G~dC~e~~Cp~-~-cs~~g~~~-~g~CiC~~g~~G~dCs~~~cpadC~g-~G~Ci-~G~C~ 330 (525)
T KOG1225|consen 262 CVEGRCICPPGFTGDDCDELVCPV-D-CSGGGVCV-DGECICNPGYSGKDCSIRRCPADCSG-HGKCI-DGECL 330 (525)
T ss_pred EeCCeEeCCCCCcCCCCCcccCCc-c-cCCCceec-CCEeecCCCccccccccccCCccCCC-CCccc-CCceE
Confidence 4668999999999999999 5554 3 88899998 88999999999999999999999998 99998 88874
No 4
>KOG1225|consensus
Probab=98.89 E-value=2.9e-09 Score=87.18 Aligned_cols=64 Identities=31% Similarity=0.777 Sum_probs=56.3
Q ss_pred EEecCCCCCCCCCCC-CCCCCCCCCCceEECCCCCeecCCCCCCCCCCCCccCCCCcCCCceeCCCCeeC
Q psy17082 36 RVQCDLHYFNSTCTT-FCRPRDDKFGHFTCDSNGDKVCIAGWKGTNCETAVCKEGCHPTHGKCDVPGLCE 104 (104)
Q Consensus 36 r~~C~~g~~G~~C~~-~C~~~~~~~g~g~C~~~G~c~C~~Gw~G~~C~~~~C~~~C~~~~G~C~~p~~C~ 104 (104)
+|.|+.+|.|+.|++ .|.+. +.+++.|. +|.|+|++||+|.+|++.+|+..|+. ||.|+ +++|.
T Consensus 235 ic~c~~~~~g~~c~~~~C~~~--c~~~g~c~-~G~CIC~~Gf~G~dC~e~~Cp~~cs~-~g~~~-~g~Ci 299 (525)
T KOG1225|consen 235 ICECPEGYFGPLCSTIYCPGG--CTGRGQCV-EGRCICPPGFTGDDCDELVCPVDCSG-GGVCV-DGECI 299 (525)
T ss_pred eeecCCceeCCccccccCCCC--CcccceEe-CCeEeCCCCCcCCCCCcccCCcccCC-Cceec-CCEee
Confidence 799999999999998 67764 56679998 99999999999999999999999986 88886 66763
No 5
>KOG4289|consensus
Probab=98.30 E-value=6.8e-07 Score=79.88 Aligned_cols=63 Identities=27% Similarity=0.626 Sum_probs=49.1
Q ss_pred cEEEecCCCCCCCCCCC---CCCCCCCCCCceEECC---CCCeecCCCCCCCCCCCCc----cCCC-CcCCCceeC
Q psy17082 34 RVRVQCDLHYFNSTCTT---FCRPRDDKFGHFTCDS---NGDKVCIAGWKGTNCETAV----CKEG-CHPTHGKCD 98 (104)
Q Consensus 34 ~~r~~C~~g~~G~~C~~---~C~~~~~~~g~g~C~~---~G~c~C~~Gw~G~~C~~~~----C~~~-C~~~~G~C~ 98 (104)
.+||.|++||+|.+|++ .|-.+ -|+.+++|.+ .-.|.|.|||+|..|+... |.|+ |.+ +|+|+
T Consensus 1221 glrCrCPpGFTgd~CeTeiDlCYs~-pC~nng~C~srEggYtCeCrpg~tGehCEvs~~agrCvpGvC~n-ggtC~ 1294 (2531)
T KOG4289|consen 1221 GLRCRCPPGFTGDYCETEIDLCYSG-PCGNNGRCRSREGGYTCECRPGFTGEHCEVSARAGRCVPGVCKN-GGTCV 1294 (2531)
T ss_pred ceeEeCCCCCCcccccchhHhhhcC-CCCCCCceEEecCceeEEecCCccccceeeecccCccccceecC-CCEEe
Confidence 37999999999999996 57654 3777899986 2379999999999999754 5543 555 66665
No 6
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=98.23 E-value=1e-06 Score=46.93 Aligned_cols=25 Identities=44% Similarity=0.764 Sum_probs=22.8
Q ss_pred CCCCceEECCC-CCeecCCCCCCCCC
Q psy17082 57 DKFGHFTCDSN-GDKVCIAGWKGTNC 81 (104)
Q Consensus 57 ~~~g~g~C~~~-G~c~C~~Gw~G~~C 81 (104)
.|++||+|+.+ |+|+|.+||+|++|
T Consensus 7 ~C~~~G~C~~~~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 7 ICSGHGTCVSPCGRCVCDSGYTGPDC 32 (32)
T ss_pred ccCCCCEEeCCCCEEECCCCCcCCCC
Confidence 57889999986 99999999999987
No 7
>KOG1226|consensus
Probab=98.05 E-value=5.6e-06 Score=70.20 Aligned_cols=66 Identities=30% Similarity=0.705 Sum_probs=43.8
Q ss_pred EEEecCCCCC----CCCCCC--C-CCC--CCCCCCceEECCCCCeecCCCCCCCCCCCC----ccCC----CCcCCCcee
Q psy17082 35 VRVQCDLHYF----NSTCTT--F-CRP--RDDKFGHFTCDSNGDKVCIAGWKGTNCETA----VCKE----GCHPTHGKC 97 (104)
Q Consensus 35 ~r~~C~~g~~----G~~C~~--~-C~~--~~~~~g~g~C~~~G~c~C~~Gw~G~~C~~~----~C~~----~C~~~~G~C 97 (104)
.+|+|.+... |+.|+- + |.- +--|+|||+|. -|+|+|.+||+|..|+=+ .|.. -|++ +|.|
T Consensus 525 GqC~C~~~~~~~i~G~fCECDnfsC~r~~g~lC~g~G~C~-CG~CvC~~GwtG~~C~C~~std~C~~~~G~iCSG-rG~C 602 (783)
T KOG1226|consen 525 GQCVCHKPDNGKIYGKFCECDNFSCERHKGVLCGGHGRCE-CGRCVCNPGWTGSACNCPLSTDTCESSDGQICSG-RGTC 602 (783)
T ss_pred CceEecCCCCCceeeeeeeccCcccccccCcccCCCCeEe-CCcEEcCCCCccCCCCCCCCCccccCCCCceeCC-Ccee
Confidence 4567766555 887763 2 322 12478899997 899999999999998733 3442 3775 7777
Q ss_pred CCCCee
Q psy17082 98 DVPGLC 103 (104)
Q Consensus 98 ~~p~~C 103 (104)
. -|+|
T Consensus 603 ~-Cg~C 607 (783)
T KOG1226|consen 603 E-CGRC 607 (783)
T ss_pred e-CCce
Confidence 4 4444
No 8
>KOG1226|consensus
Probab=97.73 E-value=4.3e-05 Score=64.96 Aligned_cols=64 Identities=27% Similarity=0.566 Sum_probs=50.9
Q ss_pred ecEEEecCCCCCCCCCCC-----CCCCCC--CCCCceEECCCCCeecCCC-CCCCCCCC-CccCCCCcCCCceeC
Q psy17082 33 YRVRVQCDLHYFNSTCTT-----FCRPRD--DKFGHFTCDSNGDKVCIAG-WKGTNCET-AVCKEGCHPTHGKCD 98 (104)
Q Consensus 33 ~~~r~~C~~g~~G~~C~~-----~C~~~~--~~~g~g~C~~~G~c~C~~G-w~G~~C~~-~~C~~~C~~~~G~C~ 98 (104)
.-.||+|.+||+|+.|+- .|.+.+ -|+|+|+|. -|+|.|... |.|+.|++ |.|+..|.. +..|+
T Consensus 564 ~CG~CvC~~GwtG~~C~C~~std~C~~~~G~iCSGrG~C~-Cg~C~C~~~~~sG~~CE~cptc~~~C~~-~~~Cv 636 (783)
T KOG1226|consen 564 ECGRCVCNPGWTGSACNCPLSTDTCESSDGQICSGRGTCE-CGRCKCTDPPYSGEFCEKCPTCPDPCAE-NKSCV 636 (783)
T ss_pred eCCcEEcCCCCccCCCCCCCCCccccCCCCceeCCCceee-CCceEcCCCCcCcchhhcCCCCCCcccc-cccch
Confidence 346899999999999972 565533 468899998 899999966 99999996 557777875 77776
No 9
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=97.40 E-value=4.5e-05 Score=32.90 Aligned_cols=12 Identities=50% Similarity=1.326 Sum_probs=8.2
Q ss_pred eecCCCCCCCCC
Q psy17082 70 KVCIAGWKGTNC 81 (104)
Q Consensus 70 c~C~~Gw~G~~C 81 (104)
|+|++||+|++|
T Consensus 2 C~C~~G~~G~~C 13 (13)
T PF12661_consen 2 CQCPPGWTGPNC 13 (13)
T ss_dssp EEE-TTEETTTT
T ss_pred ccCcCCCcCCCC
Confidence 677777777776
No 10
>KOG1219|consensus
Probab=97.09 E-value=0.00072 Score=63.62 Aligned_cols=65 Identities=23% Similarity=0.458 Sum_probs=52.2
Q ss_pred ecEEEecCCCCCCCCCCC---CCCCCCCCCCceEECCCC---CeecCCCCCCCCCCCC---ccC-CCCcCCCceeCC
Q psy17082 33 YRVRVQCDLHYFNSTCTT---FCRPRDDKFGHFTCDSNG---DKVCIAGWKGTNCETA---VCK-EGCHPTHGKCDV 99 (104)
Q Consensus 33 ~~~r~~C~~g~~G~~C~~---~C~~~~~~~g~g~C~~~G---~c~C~~Gw~G~~C~~~---~C~-~~C~~~~G~C~~ 99 (104)
-.|.|+|++-|.|..|+. .|.+.+ |...|+|.+.+ .|.|+.||+|..|+.. .|+ ..|.. +|.|+.
T Consensus 3884 ggy~CkCpsqysG~~CEi~~epC~snP-C~~GgtCip~~n~f~CnC~~gyTG~~Ce~~Gi~eCs~n~C~~-gg~C~n 3958 (4289)
T KOG1219|consen 3884 GGYKCKCPSQYSGNHCEIDLEPCASNP-CLTGGTCIPFYNGFLCNCPNGYTGKRCEARGISECSKNVCGT-GGQCIN 3958 (4289)
T ss_pred CceEEeCcccccCcccccccccccCCC-CCCCCEEEecCCCeeEeCCCCccCceeecccccccccccccC-Cceeec
Confidence 558999999999999996 687753 66679999733 5999999999999976 377 46775 788863
No 11
>KOG4260|consensus
Probab=96.85 E-value=0.0013 Score=50.80 Aligned_cols=49 Identities=24% Similarity=0.647 Sum_probs=38.8
Q ss_pred cEEEecCCCCCCCCCCCCCC--CCCCCCCceEECC------CCCeecCCCCCCCCCCC
Q psy17082 34 RVRVQCDLHYFNSTCTTFCR--PRDDKFGHFTCDS------NGDKVCIAGWKGTNCET 83 (104)
Q Consensus 34 ~~r~~C~~g~~G~~C~~~C~--~~~~~~g~g~C~~------~G~c~C~~Gw~G~~C~~ 83 (104)
+.++-|+.|-||++|-. |. ....|+|+|.|.- +|.|.|.+||+|+.|..
T Consensus 127 qLkvCCp~gtyGpdCl~-Cpggser~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~ 183 (350)
T KOG4260|consen 127 QLKVCCPDGTYGPDCLQ-CPGGSERPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRY 183 (350)
T ss_pred hheeccCCCCcCCcccc-CCCCCcCCcCCCCcccCCCCCCCCCcccccCCCCCccccc
Confidence 45778999999999985 41 2224788889974 56899999999999964
No 12
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=95.80 E-value=0.0084 Score=31.68 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=19.2
Q ss_pred cCceeEEEecEEEecCCCCCCCCC
Q psy17082 25 KGKTARITYRVRVQCDLHYFNSTC 48 (104)
Q Consensus 25 ~~~~~~l~~~~r~~C~~g~~G~~C 48 (104)
.++++-+....+|+|+++|+|++|
T Consensus 9 ~~~G~C~~~~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 9 SGHGTCVSPCGRCVCDSGYTGPDC 32 (32)
T ss_pred CCCCEEeCCCCEEECCCCCcCCCC
Confidence 455666655789999999999987
No 13
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=95.61 E-value=0.01 Score=33.91 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=19.0
Q ss_pred eEECC-CCCeecCCCCCCCCCCC
Q psy17082 62 FTCDS-NGDKVCIAGWKGTNCET 83 (104)
Q Consensus 62 g~C~~-~G~c~C~~Gw~G~~C~~ 83 (104)
..|+. .|+|.|.+||+|..|++
T Consensus 12 ~~C~~~~G~C~C~~~~~G~~C~~ 34 (50)
T cd00055 12 GQCDPGTGQCECKPNTTGRRCDR 34 (50)
T ss_pred ccccCCCCEEeCCCcCCCCCCCC
Confidence 35876 78999999999999984
No 14
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=94.75 E-value=0.051 Score=30.58 Aligned_cols=22 Identities=32% Similarity=0.690 Sum_probs=18.9
Q ss_pred eEECC-CCCeecCCCCCCCCCCC
Q psy17082 62 FTCDS-NGDKVCIAGWKGTNCET 83 (104)
Q Consensus 62 g~C~~-~G~c~C~~Gw~G~~C~~ 83 (104)
..|++ .|+|.|.++|+|..|++
T Consensus 11 ~~C~~~~G~C~C~~~~~G~~C~~ 33 (46)
T smart00180 11 GTCDPDTGQCECKPNVTGRRCDR 33 (46)
T ss_pred CcccCCCCEEECCCCCCCCCCCc
Confidence 46876 68999999999999984
No 15
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=94.71 E-value=0.0081 Score=34.04 Aligned_cols=25 Identities=44% Similarity=0.978 Sum_probs=19.2
Q ss_pred eEECC-CCCeecCCCCCCCCCCCCccCC
Q psy17082 62 FTCDS-NGDKVCIAGWKGTNCETAVCKE 88 (104)
Q Consensus 62 g~C~~-~G~c~C~~Gw~G~~C~~~~C~~ 88 (104)
..|++ .|+|.|.++|+|+.|++ |.+
T Consensus 11 ~~C~~~~G~C~C~~~~~G~~C~~--C~~ 36 (49)
T PF00053_consen 11 QTCDPSTGQCVCKPGTTGPRCDQ--CKP 36 (49)
T ss_dssp SSEEETCEEESBSTTEESTTS-E--E-T
T ss_pred CcccCCCCEEeccccccCCcCcC--CCC
Confidence 36776 78999999999999995 554
No 16
>KOG1218|consensus
Probab=94.60 E-value=0.074 Score=39.78 Aligned_cols=56 Identities=23% Similarity=0.426 Sum_probs=36.8
Q ss_pred ecCC-CCCCCCCCCCCCCCCCCCCceEECCCCCeecCCCCCCCCCCCCc--cCCCCcCCC-ceeC
Q psy17082 38 QCDL-HYFNSTCTTFCRPRDDKFGHFTCDSNGDKVCIAGWKGTNCETAV--CKEGCHPTH-GKCD 98 (104)
Q Consensus 38 ~C~~-g~~G~~C~~~C~~~~~~~g~g~C~~~G~c~C~~Gw~G~~C~~~~--C~~~C~~~~-G~C~ 98 (104)
.|.+ +|+|..|...|.+. ++.....+.|.|.+||.|..|.... |.+.+...+ +.|+
T Consensus 136 ~C~~~~~~g~~C~~~c~~~-----~~~~~~~~~c~c~~g~~g~~~~~~~~~c~~~~~~~~g~~C~ 195 (316)
T KOG1218|consen 136 QCGEENLVGLKCQRDCQCT-----GGCDCKNGICTCQPGFVGVFCVESCSGCSPLTACENGAKCN 195 (316)
T ss_pred cccccCCCCCCccCCCCCc-----cccCCCCCceeccCCcccccccccCCCcCCCcccCCCCeee
Confidence 4444 88888888877321 2233348899999999999998754 454333223 4775
No 17
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=93.85 E-value=0.029 Score=29.31 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=15.0
Q ss_pred CCCceEECCCC----CeecCCCCCCCC
Q psy17082 58 KFGHFTCDSNG----DKVCIAGWKGTN 80 (104)
Q Consensus 58 ~~g~g~C~~~G----~c~C~~Gw~G~~ 80 (104)
|..+++|.... .|.|.+||+|.+
T Consensus 6 C~n~g~C~~~~~~~y~C~C~~G~~G~~ 32 (32)
T PF00008_consen 6 CQNGGTCIDLPGGGYTCECPPGYTGKR 32 (32)
T ss_dssp STTTEEEEEESTSEEEEEEBTTEESTT
T ss_pred CCCCeEEEeCCCCCEEeECCCCCccCC
Confidence 33456776522 578888888863
No 18
>KOG1217|consensus
Probab=93.84 E-value=0.16 Score=39.25 Aligned_cols=69 Identities=26% Similarity=0.597 Sum_probs=45.8
Q ss_pred EEEecEEEecCCCCCCCCC----C-CCCCC---CCCCCCceEECCCC-----CeecCCCCCCCCCCCC--ccCCC-CcCC
Q psy17082 30 RITYRVRVQCDLHYFNSTC----T-TFCRP---RDDKFGHFTCDSNG-----DKVCIAGWKGTNCETA--VCKEG-CHPT 93 (104)
Q Consensus 30 ~l~~~~r~~C~~g~~G~~C----~-~~C~~---~~~~~g~g~C~~~G-----~c~C~~Gw~G~~C~~~--~C~~~-C~~~ 93 (104)
.+...++|.|+++|.|..| . ..|.+ ...+...+.|...+ .|.|.+||.|..|+.. .|... |..
T Consensus 288 ~~~~~~~C~C~~g~~g~~~~~~~~~~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~c~~~~~g~~C~~~~~~C~~~~~~~- 366 (487)
T KOG1217|consen 288 NVPGSYRCTCPPGFTGRLCTECVDVDECSPRNAGGPCANGGTCNTLGSFGGFRCACGPGFTGRRCEDSNDECASSPCCP- 366 (487)
T ss_pred cCCCcceeeCCCCCCCCCCccccccccccccccCCcCCCCcccccCCCCCCCCcCCCCCCCCCccccCCccccCCcccc-
Confidence 3333488999999999998 1 13432 11233344663222 4999999999999977 57754 665
Q ss_pred CceeCC
Q psy17082 94 HGKCDV 99 (104)
Q Consensus 94 ~G~C~~ 99 (104)
++.|+.
T Consensus 367 ~~~c~~ 372 (487)
T KOG1217|consen 367 GGTCVN 372 (487)
T ss_pred CCEecc
Confidence 788874
No 19
>KOG3607|consensus
Probab=93.67 E-value=0.044 Score=47.06 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=25.7
Q ss_pred CCCCceEECCCCCeecCCCCCCCCCCCC
Q psy17082 57 DKFGHFTCDSNGDKVCIAGWKGTNCETA 84 (104)
Q Consensus 57 ~~~g~g~C~~~G~c~C~~Gw~G~~C~~~ 84 (104)
.|++||+|+....|.|.+||.+++|+..
T Consensus 631 ~C~g~GVCnn~~~ChC~~gwapp~C~~~ 658 (716)
T KOG3607|consen 631 TCNGHGVCNNELNCHCEPGWAPPFCFIF 658 (716)
T ss_pred ccCCCcccCCCcceeeCCCCCCCccccc
Confidence 4889999999999999999999999864
No 20
>KOG0994|consensus
Probab=93.36 E-value=0.064 Score=48.45 Aligned_cols=54 Identities=28% Similarity=0.510 Sum_probs=40.6
Q ss_pred eEEEecEEEecCCCCCCCCCCC-----------CCCCCCCCCCce----EECC-CCCeecCCCCCCCCCCC
Q psy17082 29 ARITYRVRVQCDLHYFNSTCTT-----------FCRPRDDKFGHF----TCDS-NGDKVCIAGWKGTNCET 83 (104)
Q Consensus 29 ~~l~~~~r~~C~~g~~G~~C~~-----------~C~~~~~~~g~g----~C~~-~G~c~C~~Gw~G~~C~~ 83 (104)
..-.|...|.|.+||-|..|+. .|.+ .+|...| .|+. +|.|+|.+|-.|+.|++
T Consensus 1078 qCN~ftGQCqCkpGfGGR~C~qCqel~WGdP~~~C~a-CdCd~rG~~tpQCdr~tG~C~C~~Gv~G~rCdq 1147 (1758)
T KOG0994|consen 1078 QCNEFTGQCQCKPGFGGRTCSQCQELYWGDPNEKCRA-CDCDPRGIETPQCDRATGRCVCRPGVGGPRCDQ 1147 (1758)
T ss_pred cccccccceeccCCCCCcchhHHHHhhcCCCCCCcee-cCCCCCCCCCCCccccCCceeecCCCCCcchhh
Confidence 4456788999999999999983 2443 2232222 4876 79999999999999996
No 21
>KOG4289|consensus
Probab=92.64 E-value=0.15 Score=47.31 Aligned_cols=47 Identities=26% Similarity=0.547 Sum_probs=32.1
Q ss_pred ecEEEecCCCCCCCCCCCCCCCCCCCCCceEECC-CC----CeecCCCCCCCCCCCC
Q psy17082 33 YRVRVQCDLHYFNSTCTTFCRPRDDKFGHFTCDS-NG----DKVCIAGWKGTNCETA 84 (104)
Q Consensus 33 ~~~r~~C~~g~~G~~C~~~C~~~~~~~g~g~C~~-~G----~c~C~~Gw~G~~C~~~ 84 (104)
....|.|++ | .|-..|.-.+ |...|+|.. +| +|.|++|++|++|+..
T Consensus 1704 ~d~sC~c~~--~--~C~~vC~lnp-c~~~g~Cv~sp~a~GY~C~C~~g~~G~~Ce~~ 1755 (2531)
T KOG4289|consen 1704 VDSSCPCDP--Y--NCVDVCSLNP-CENQGTCVRSPGAHGYTCECPPGYTGPYCELR 1755 (2531)
T ss_pred cCCcccCCC--C--Cccchhcccc-cccCceeecCCCCCceeEECCCcccCcchhhh
Confidence 344688888 3 7877776532 444677875 22 6888899999888854
No 22
>smart00181 EGF Epidermal growth factor-like domain.
Probab=89.51 E-value=0.52 Score=24.00 Aligned_cols=14 Identities=36% Similarity=0.911 Sum_probs=11.0
Q ss_pred CeecCCCCCC-CCCC
Q psy17082 69 DKVCIAGWKG-TNCE 82 (104)
Q Consensus 69 ~c~C~~Gw~G-~~C~ 82 (104)
.|.|.+||.| ..|+
T Consensus 21 ~C~C~~g~~g~~~C~ 35 (35)
T smart00181 21 TCSCPPGYTGDKRCE 35 (35)
T ss_pred EeECCCCCccCCccC
Confidence 5689999999 6653
No 23
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=88.97 E-value=0.66 Score=22.99 Aligned_cols=21 Identities=33% Similarity=0.661 Sum_probs=14.3
Q ss_pred ceEECC---CCCeecCCCCCCC-CC
Q psy17082 61 HFTCDS---NGDKVCIAGWKGT-NC 81 (104)
Q Consensus 61 ~g~C~~---~G~c~C~~Gw~G~-~C 81 (104)
++.|.. ...|.|.+||.|. .|
T Consensus 11 ~~~C~~~~~~~~C~C~~g~~g~~~C 35 (36)
T cd00053 11 GGTCVNTPGSYRCVCPPGYTGDRSC 35 (36)
T ss_pred CCEEecCCCCeEeECCCCCcccCCc
Confidence 345554 2367899999998 55
No 24
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=88.74 E-value=0.24 Score=29.44 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=16.1
Q ss_pred CCCCceEECCCC-------CeecCCCCCCCCCCCC
Q psy17082 57 DKFGHFTCDSNG-------DKVCIAGWKGTNCETA 84 (104)
Q Consensus 57 ~~~g~g~C~~~G-------~c~C~~Gw~G~~C~~~ 84 (104)
.|+|||+.-.+| .|.|..-|.|++|++.
T Consensus 18 ~CSGHGr~flDg~~~dG~p~CECn~Cy~GpdCS~~ 52 (56)
T PF04863_consen 18 SCSGHGRAFLDGLIADGSPVCECNSCYGGPDCSTL 52 (56)
T ss_dssp --TTSEE--TTS-EETTEE--EE-TTEESTTS-EE
T ss_pred CcCCCCeeeeccccccCCccccccCCcCCCCcccC
Confidence 367888865433 6899999999999975
No 25
>KOG1219|consensus
Probab=88.50 E-value=0.46 Score=46.15 Aligned_cols=55 Identities=18% Similarity=0.290 Sum_probs=43.3
Q ss_pred ceeEEEecEEEecCCCCCCCCCCCC----CCCCCCCCCceEECC-CC--CeecCCCCCCCCCC
Q psy17082 27 KTARITYRVRVQCDLHYFNSTCTTF----CRPRDDKFGHFTCDS-NG--DKVCIAGWKGTNCE 82 (104)
Q Consensus 27 ~~~~l~~~~r~~C~~g~~G~~C~~~----C~~~~~~~g~g~C~~-~G--~c~C~~Gw~G~~C~ 82 (104)
.+..+--.+-|.|+.+|+|.+|+.. |.- +.|...|.|.. +| .|.|.+|+.|..|.
T Consensus 3916 tCip~~n~f~CnC~~gyTG~~Ce~~Gi~eCs~-n~C~~gg~C~n~~gsf~CncT~g~~gr~c~ 3977 (4289)
T KOG1219|consen 3916 TCIPFYNGFLCNCPNGYTGKRCEARGISECSK-NVCGTGGQCINIPGSFHCNCTPGILGRTCC 3977 (4289)
T ss_pred EEEecCCCeeEeCCCCccCceeeccccccccc-ccccCCceeeccCCceEeccChhHhcccCc
Confidence 4444555678999999999999964 654 35666778987 67 79999999999994
No 26
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=88.12 E-value=0.74 Score=23.67 Aligned_cols=14 Identities=43% Similarity=0.959 Sum_probs=11.5
Q ss_pred CeecCCCCC-CCCCC
Q psy17082 69 DKVCIAGWK-GTNCE 82 (104)
Q Consensus 69 ~c~C~~Gw~-G~~C~ 82 (104)
.|.|.+||. |..|+
T Consensus 25 ~C~C~~g~~~g~~C~ 39 (39)
T smart00179 25 RCECPPGYTDGRNCE 39 (39)
T ss_pred EeECCCCCccCCcCC
Confidence 478999999 88774
No 27
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=87.56 E-value=0.53 Score=23.78 Aligned_cols=14 Identities=43% Similarity=0.980 Sum_probs=11.5
Q ss_pred CeecCCCCCCCCCC
Q psy17082 69 DKVCIAGWKGTNCE 82 (104)
Q Consensus 69 ~c~C~~Gw~G~~C~ 82 (104)
.|.|.+||.|..|+
T Consensus 25 ~C~C~~g~~g~~C~ 38 (38)
T cd00054 25 RCSCPPGYTGRNCE 38 (38)
T ss_pred EeECCCCCcCCcCC
Confidence 47899999998774
No 28
>KOG1217|consensus
Probab=87.20 E-value=1.2 Score=34.33 Aligned_cols=52 Identities=29% Similarity=0.494 Sum_probs=39.5
Q ss_pred ecEEEecCCCCCCCCCCC---CCCC-CCCCCCceEECCCC---CeecCCCCCCCCCCCC
Q psy17082 33 YRVRVQCDLHYFNSTCTT---FCRP-RDDKFGHFTCDSNG---DKVCIAGWKGTNCETA 84 (104)
Q Consensus 33 ~~~r~~C~~g~~G~~C~~---~C~~-~~~~~g~g~C~~~G---~c~C~~Gw~G~~C~~~ 84 (104)
-.+++.|.++|.|..|.. .|.. ...+...+.|.... .|.|.+||+|..|+..
T Consensus 150 ~~~~c~C~~g~~~~~~~~~~~~C~~~~~~c~~~~~C~~~~~~~~C~c~~~~~~~~~~~~ 208 (487)
T KOG1217|consen 150 GPFRCSCTEGYEGEPCETDLDECIQYSSPCQNGGTCVNTGGSYLCSCPPGYTGSTCETT 208 (487)
T ss_pred CceeeeeCCCcccccccccccccccCCCCcCCCcccccCCCCeeEeCCCCccCCcCcCC
Confidence 467899999999999985 4652 22355567887643 4999999999999865
No 29
>KOG0994|consensus
Probab=85.81 E-value=0.94 Score=41.40 Aligned_cols=52 Identities=23% Similarity=0.555 Sum_probs=34.4
Q ss_pred EecEEEecCCCCCCCCCCC------------CCCCC-CCCCCceEECC-CCCeecCCCCCCCCCCC
Q psy17082 32 TYRVRVQCDLHYFNSTCTT------------FCRPR-DDKFGHFTCDS-NGDKVCIAGWKGTNCET 83 (104)
Q Consensus 32 ~~~~r~~C~~g~~G~~C~~------------~C~~~-~~~~g~g~C~~-~G~c~C~~Gw~G~~C~~ 83 (104)
++...|-|.++--|..|+. -|.|- .+..+.-.|+. .|.|.|.|||-|..|++
T Consensus 1034 r~tGQCpClpNv~G~~CDqCA~N~w~laSG~GCe~C~Cd~~~~pqCN~ftGQCqCkpGfGGR~C~q 1099 (1758)
T KOG0994|consen 1034 RFTGQCPCLPNVQGVRCDQCAENHWNLASGEGCEPCNCDPIGGPQCNEFTGQCQCKPGFGGRTCSQ 1099 (1758)
T ss_pred cccCcCCCCcccccccccccccchhccccCCCCCccCCCccCCccccccccceeccCCCCCcchhH
Confidence 4556677777777777763 12220 11223336776 79999999999999875
No 30
>smart00051 DSL delta serrate ligand.
Probab=84.49 E-value=1.1 Score=26.90 Aligned_cols=31 Identities=26% Similarity=0.627 Sum_probs=20.3
Q ss_pred eecCCCCCCCCCCCCccCC--CCcCCCceeCCCCe
Q psy17082 70 KVCIAGWKGTNCETAVCKE--GCHPTHGKCDVPGL 102 (104)
Q Consensus 70 c~C~~Gw~G~~C~~~~C~~--~C~~~~G~C~~p~~ 102 (104)
-.|+++|.|..|++ .|.+ .+.. |.+|...|+
T Consensus 19 v~C~~~~yG~~C~~-~C~~~~d~~~-~~~Cd~~G~ 51 (63)
T smart00051 19 VTCDENYYGEGCNK-FCRPRDDFFG-HYTCDENGN 51 (63)
T ss_pred eeCCCCCcCCccCC-EeCcCccccC-CccCCcCCC
Confidence 47899999999974 4654 2333 555654443
No 31
>PHA02887 EGF-like protein; Provisional
Probab=83.86 E-value=0.87 Score=31.10 Aligned_cols=23 Identities=22% Similarity=0.586 Sum_probs=18.6
Q ss_pred ceEECC-----CCCeecCCCCCCCCCCC
Q psy17082 61 HFTCDS-----NGDKVCIAGWKGTNCET 83 (104)
Q Consensus 61 ~g~C~~-----~G~c~C~~Gw~G~~C~~ 83 (104)
||+|.- .-.|.|.+||+|..|+.
T Consensus 96 HG~C~yI~dL~epsCrC~~GYtG~RCE~ 123 (126)
T PHA02887 96 NGECMNIIDLDEKFCICNKGYTGIRCDE 123 (126)
T ss_pred CCEEEccccCCCceeECCCCcccCCCCc
Confidence 677863 23699999999999985
No 32
>KOG1218|consensus
Probab=80.27 E-value=5.2 Score=29.77 Aligned_cols=46 Identities=24% Similarity=0.425 Sum_probs=31.0
Q ss_pred Eec-CCCCCCCCCCCCCCCCCCCCCceEECCCC-CeecCCCCCCCCCCC
Q psy17082 37 VQC-DLHYFNSTCTTFCRPRDDKFGHFTCDSNG-DKVCIAGWKGTNCET 83 (104)
Q Consensus 37 ~~C-~~g~~G~~C~~~C~~~~~~~g~g~C~~~G-~c~C~~Gw~G~~C~~ 83 (104)
..| ..+|.|..|...+.....+.. .+|.... .|.+..+|.+..|..
T Consensus 92 ~~~~~~~~~g~~C~~~~~~~~~c~~-~~C~~~~~~c~~~~~~~~~~C~~ 139 (316)
T KOG1218|consen 92 GYCHLNGYEGPQCESPCPCGDGCAE-KTCANPRRECRCGGGYIGEQCGE 139 (316)
T ss_pred CcccCCCCCcccccCCCCcCCcccc-cccCCCccceecCCcCccccccc
Confidence 344 689999999987665322222 5677655 378888888887776
No 33
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=79.22 E-value=1.3 Score=29.50 Aligned_cols=29 Identities=28% Similarity=0.686 Sum_probs=22.5
Q ss_pred CCCCCceEECCC----C----CeecCC-------------CCCCCCCCCC
Q psy17082 56 DDKFGHFTCDSN----G----DKVCIA-------------GWKGTNCETA 84 (104)
Q Consensus 56 ~~~~g~g~C~~~----G----~c~C~~-------------Gw~G~~C~~~ 84 (104)
+.|+|||.|... + .|.|.+ .|.|+.|++.
T Consensus 13 n~CsgHG~C~~~~~~~~~~C~~C~C~~T~~~~~~~~~ktt~W~G~aCqKk 62 (103)
T PF12955_consen 13 NNCSGHGSCVKKYGSGGGDCFACKCKPTVVKTGSGKGKTTHWGGPACQKK 62 (103)
T ss_pred cCCCCCceEeeccCCCccceEEEEeeccccccccccCceeeecccccccc
Confidence 468899999864 1 588988 7889999864
No 34
>PHA02887 EGF-like protein; Provisional
Probab=76.48 E-value=1.7 Score=29.71 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=14.3
Q ss_pred EEEecCCCCCCCCCCC
Q psy17082 35 VRVQCDLHYFNSTCTT 50 (104)
Q Consensus 35 ~r~~C~~g~~G~~C~~ 50 (104)
.-|+|++||+|.+|+.
T Consensus 108 psCrC~~GYtG~RCE~ 123 (126)
T PHA02887 108 KFCICNKGYTGIRCDE 123 (126)
T ss_pred ceeECCCCcccCCCCc
Confidence 4689999999999986
No 35
>KOG1214|consensus
Probab=76.24 E-value=3.9 Score=36.52 Aligned_cols=46 Identities=24% Similarity=0.473 Sum_probs=32.0
Q ss_pred cEEEecCCCCCCC--CCCC--CCCCCCCCCCceEECC-CC--CeecCCCCCCCC
Q psy17082 34 RVRVQCDLHYFNS--TCTT--FCRPRDDKFGHFTCDS-NG--DKVCIAGWKGTN 80 (104)
Q Consensus 34 ~~r~~C~~g~~G~--~C~~--~C~~~~~~~g~g~C~~-~G--~c~C~~Gw~G~~ 80 (104)
.|.|.|.+||.|. .|.. .|.|. .|.-.-.|.. +| .|.|.+||+|+.
T Consensus 808 ~y~C~CLPGfsGDG~~c~dvDeC~ps-rChp~A~CyntpgsfsC~C~pGy~GDG 860 (1289)
T KOG1214|consen 808 TYSCACLPGFSGDGHQCTDVDECSPS-RCHPAATCYNTPGSFSCRCQPGYYGDG 860 (1289)
T ss_pred eEEEeecCCccCCccccccccccCcc-ccCCCceEecCCCcceeecccCccCCC
Confidence 4679999999986 3433 56663 3444556764 33 699999999863
No 36
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=75.11 E-value=3.4 Score=23.23 Aligned_cols=29 Identities=28% Similarity=0.564 Sum_probs=21.3
Q ss_pred CCCCCCCCC--CCCCCCCCCCceEECCCCCeecCCCCC
Q psy17082 42 HYFNSTCTT--FCRPRDDKFGHFTCDSNGDKVCIAGWK 77 (104)
Q Consensus 42 g~~G~~C~~--~C~~~~~~~g~g~C~~~G~c~C~~Gw~ 77 (104)
-..|..|+. .|. ++..|. +|.|.|.+|+.
T Consensus 16 ~~~g~~C~~~~qC~------~~s~C~-~g~C~C~~g~~ 46 (52)
T PF01683_consen 16 VQPGESCESDEQCI------GGSVCV-NGRCQCPPGYV 46 (52)
T ss_pred CCCCCCCCCcCCCC------CcCEEc-CCEeECCCCCE
Confidence 566777774 455 356896 89999999975
No 37
>KOG3512|consensus
Probab=71.86 E-value=4 Score=34.11 Aligned_cols=24 Identities=29% Similarity=0.673 Sum_probs=20.7
Q ss_pred CceEEC-CCCCeecCCCCCCCCCCC
Q psy17082 60 GHFTCD-SNGDKVCIAGWKGTNCET 83 (104)
Q Consensus 60 g~g~C~-~~G~c~C~~Gw~G~~C~~ 83 (104)
.+-+|+ ..|+|.|.+|-+|..|+.
T Consensus 405 ~gktCNq~tGqCpCkeGvtG~tCnr 429 (592)
T KOG3512|consen 405 AGKTCNQTTGQCPCKEGVTGLTCNR 429 (592)
T ss_pred ccccccccCCcccCCCCCccccccc
Confidence 356899 489999999999999974
No 38
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=71.75 E-value=3.1 Score=28.87 Aligned_cols=17 Identities=24% Similarity=0.548 Sum_probs=14.7
Q ss_pred CCeecCCCCCCCCCCCC
Q psy17082 68 GDKVCIAGWKGTNCETA 84 (104)
Q Consensus 68 G~c~C~~Gw~G~~C~~~ 84 (104)
-.|.|..||+|..|+..
T Consensus 67 ~~CrC~~GYtGeRCEh~ 83 (139)
T PHA03099 67 MYCRCSHGYTGIRCQHV 83 (139)
T ss_pred ceeECCCCcccccccce
Confidence 36899999999999864
No 39
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=65.03 E-value=2.7 Score=22.45 Aligned_cols=19 Identities=11% Similarity=0.102 Sum_probs=12.5
Q ss_pred eEEEecEEEecCCCCCCCC
Q psy17082 29 ARITYRVRVQCDLHYFNST 47 (104)
Q Consensus 29 ~~l~~~~r~~C~~g~~G~~ 47 (104)
+.+.-++.|+|.+||.|.-
T Consensus 15 ~~~~~~~~C~C~~Gy~GdG 33 (36)
T PF12947_consen 15 TNTGGSYTCTCKPGYEGDG 33 (36)
T ss_dssp EE-TTSEEEEE-CEEECCS
T ss_pred ecCCCCEEeECCCCCccCC
Confidence 3444478899999998863
No 40
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=64.47 E-value=4.3 Score=28.19 Aligned_cols=18 Identities=17% Similarity=0.451 Sum_probs=15.5
Q ss_pred cEEEecCCCCCCCCCCCC
Q psy17082 34 RVRVQCDLHYFNSTCTTF 51 (104)
Q Consensus 34 ~~r~~C~~g~~G~~C~~~ 51 (104)
...|.|+.||.|.+|+..
T Consensus 66 ~~~CrC~~GYtGeRCEh~ 83 (139)
T PHA03099 66 GMYCRCSHGYTGIRCQHV 83 (139)
T ss_pred CceeECCCCcccccccce
Confidence 357999999999999974
No 41
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=62.86 E-value=14 Score=18.09 Aligned_cols=12 Identities=17% Similarity=0.224 Sum_probs=7.8
Q ss_pred cEEEecCCCCCC
Q psy17082 34 RVRVQCDLHYFN 45 (104)
Q Consensus 34 ~~r~~C~~g~~G 45 (104)
+++|.|.+||.-
T Consensus 1 sy~C~C~~Gy~l 12 (24)
T PF12662_consen 1 SYTCSCPPGYQL 12 (24)
T ss_pred CEEeeCCCCCcC
Confidence 356777777753
No 42
>KOG1214|consensus
Probab=61.37 E-value=15 Score=33.10 Aligned_cols=71 Identities=24% Similarity=0.584 Sum_probs=41.4
Q ss_pred ceeEEEecEEEecCCCCC--C--CCCCC--------CCCCC-CCC--CCceEECCCC----CeecCCCCCCCC---CCCC
Q psy17082 27 KTARITYRVRVQCDLHYF--N--STCTT--------FCRPR-DDK--FGHFTCDSNG----DKVCIAGWKGTN---CETA 84 (104)
Q Consensus 27 ~~~~l~~~~r~~C~~g~~--G--~~C~~--------~C~~~-~~~--~g~g~C~~~G----~c~C~~Gw~G~~---C~~~ 84 (104)
..+.+.-++||.|..+|- + .+|-. .|... .+| .+|-+|+..| .|.|.|||.|+. |+..
T Consensus 749 ~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~pap~n~Ce~g~h~C~i~g~a~c~~hGgs~y~C~CLPGfsGDG~~c~dvD 828 (1289)
T KOG1214|consen 749 VCINLPGSYRCECRSGYEFADDRHTCVLITPPAPANPCEDGSHTCAIAGQARCVHHGGSTYSCACLPGFSGDGHQCTDVD 828 (1289)
T ss_pred eeecCCCceeEEEeecceeccCCcceEEecCCCCCCccccCccccCcCCceEEEecCCceEEEeecCCccCCcccccccc
Confidence 344555567777777662 3 24432 23221 122 4566777544 699999999963 4555
Q ss_pred ccCC-CCcCCCceeC
Q psy17082 85 VCKE-GCHPTHGKCD 98 (104)
Q Consensus 85 ~C~~-~C~~~~G~C~ 98 (104)
.|.+ .|+. ..+|+
T Consensus 829 eC~psrChp-~A~Cy 842 (1289)
T KOG1214|consen 829 ECSPSRCHP-AATCY 842 (1289)
T ss_pred ccCccccCC-CceEe
Confidence 5664 5765 66665
No 43
>KOG1836|consensus
Probab=58.48 E-value=6.7 Score=37.17 Aligned_cols=53 Identities=28% Similarity=0.543 Sum_probs=34.7
Q ss_pred EEecEEE-ecCCCCCCCC---CCCCCCC---CCCCCCceEECCCCCeecCCCCCCCCCCC
Q psy17082 31 ITYRVRV-QCDLHYFNST---CTTFCRP---RDDKFGHFTCDSNGDKVCIAGWKGTNCET 83 (104)
Q Consensus 31 l~~~~r~-~C~~g~~G~~---C~~~C~~---~~~~~g~g~C~~~G~c~C~~Gw~G~~C~~ 83 (104)
.+..+.| +|..+||=.. =...|.+ .++-+-+..|+..|+|.|.||++|..|+.
T Consensus 370 ntag~~CerC~~~f~R~~~~~~~~~c~~C~c~~~gsl~~~~~~~g~c~c~P~v~g~~cD~ 429 (1705)
T KOG1836|consen 370 NTAGVHCERCLLGFYRSRQVTEPNPCRPCICNSAGSLSAQCDDTGRCQCKPGVTGQKCDR 429 (1705)
T ss_pred cccCcchhhccccccccCCCCCCCcCcccCCCCccchhhhhccCCcceecccccccccCc
Confidence 3455666 7888887655 2223333 11112234688899999999999999985
No 44
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=55.77 E-value=11 Score=20.19 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=9.4
Q ss_pred CCCeecCCCCCC
Q psy17082 67 NGDKVCIAGWKG 78 (104)
Q Consensus 67 ~G~c~C~~Gw~G 78 (104)
.+.|.|++||.=
T Consensus 17 ~~~C~CPeGyIl 28 (34)
T PF09064_consen 17 PGQCFCPEGYIL 28 (34)
T ss_pred CCceeCCCceEe
Confidence 457899999863
No 45
>KOG1836|consensus
Probab=51.32 E-value=14 Score=35.12 Aligned_cols=46 Identities=33% Similarity=0.698 Sum_probs=34.2
Q ss_pred EecCCCCCCCCCCC--------------C--CCCCCCCCCc-eEECC-CCCeecCCCCCCCCCCC
Q psy17082 37 VQCDLHYFNSTCTT--------------F--CRPRDDKFGH-FTCDS-NGDKVCIAGWKGTNCET 83 (104)
Q Consensus 37 ~~C~~g~~G~~C~~--------------~--C~~~~~~~g~-g~C~~-~G~c~C~~Gw~G~~C~~ 83 (104)
|.|+.||.|..|+. + |.+ .++.|| ..|++ .|.|.|.+--.|+.|++
T Consensus 697 c~C~~g~tG~~Ce~C~~gfrr~~~~~~~~~~c~~-C~cngh~~~Cd~~tG~C~C~~~t~G~~C~~ 760 (1705)
T KOG1836|consen 697 CTCPVGYTGQFCESCAPGFRRLSPQLGPFCPCIP-CDCNGHSNICDPRTGQCKCKHNTFGGQCAQ 760 (1705)
T ss_pred ccCCCCcccchhhhcchhhhcccccCCCCCcccc-cccCCccccccCCCCceecccCCCCCchhh
Confidence 99999999999973 1 222 356676 67987 78888887777777764
No 46
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=43.46 E-value=38 Score=21.69 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=15.2
Q ss_pred CCCceEECCC--CCeecCCCCCC
Q psy17082 58 KFGHFTCDSN--GDKVCIAGWKG 78 (104)
Q Consensus 58 ~~g~g~C~~~--G~c~C~~Gw~G 78 (104)
|+..+.|+.+ ..|.|.+||.-
T Consensus 86 CG~~g~C~~~~~~~C~Cl~GF~P 108 (110)
T PF00954_consen 86 CGPNGICNSNNSPKCSCLPGFEP 108 (110)
T ss_pred cCCccEeCCCCCCceECCCCcCC
Confidence 4446788863 36999999864
No 47
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=33.19 E-value=27 Score=18.67 Aligned_cols=19 Identities=16% Similarity=0.205 Sum_probs=12.7
Q ss_pred CceeEEEecEEEecCCCCC
Q psy17082 26 GKTARITYRVRVQCDLHYF 44 (104)
Q Consensus 26 ~~~~~l~~~~r~~C~~g~~ 44 (104)
+..+.+.-+|+|.|.+||.
T Consensus 16 ~~C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 16 GTCVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp SEEEEETTEEEEEESTTEE
T ss_pred CEEEcCCCCEEeeCCCCcE
Confidence 3445556667788888876
No 48
>KOG1388|consensus
Probab=32.26 E-value=21 Score=26.70 Aligned_cols=46 Identities=24% Similarity=0.481 Sum_probs=31.9
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCce--EECCCCCeec-CCCCCCCCCCCC
Q psy17082 38 QCDLHYFNSTCTTFCRPRDDKFGHF--TCDSNGDKVC-IAGWKGTNCETA 84 (104)
Q Consensus 38 ~C~~g~~G~~C~~~C~~~~~~~g~g--~C~~~G~c~C-~~Gw~G~~C~~~ 84 (104)
+|..+|||..=...|.|. ++.|+. .+...|+|.| .-|..|..|++-
T Consensus 80 kc~~g~~GdtN~g~c~~~-~~~g~~~~~~~~~~~c~c~~kgvvgd~c~~~ 128 (217)
T KOG1388|consen 80 KCIVGFYGDTNGGKCQPC-DCNGGASACVTLTGKCFCTTKGVVGDLCPKC 128 (217)
T ss_pred ceEEEEEecCCCCccCHh-hhcCCeeeeeccCCccccccceEecccCccc
Confidence 477888887544577774 343333 3445899999 699999998753
No 49
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=28.70 E-value=34 Score=27.18 Aligned_cols=17 Identities=29% Similarity=0.851 Sum_probs=13.5
Q ss_pred CCeecCCCCCC-CC--CCCC
Q psy17082 68 GDKVCIAGWKG-TN--CETA 84 (104)
Q Consensus 68 G~c~C~~Gw~G-~~--C~~~ 84 (104)
..|.|.|||.| ++ |.+|
T Consensus 35 ~~~~~rp~w~~~~~~~~~ip 54 (356)
T PF04724_consen 35 ISCFCRPGWHGPPDPFCGIP 54 (356)
T ss_pred eEEeccCccCCCCCCCCCCC
Confidence 46789999999 55 8876
No 50
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=24.63 E-value=43 Score=18.73 Aligned_cols=8 Identities=25% Similarity=0.646 Sum_probs=6.2
Q ss_pred eecCCCCC
Q psy17082 70 KVCIAGWK 77 (104)
Q Consensus 70 c~C~~Gw~ 77 (104)
|.|.+||.
T Consensus 35 C~C~~G~v 42 (55)
T PF01826_consen 35 CFCPPGYV 42 (55)
T ss_dssp EEETTTEE
T ss_pred CCCCCCee
Confidence 88888775
No 51
>PF02977 CarbpepA_inh: Carboxypeptidase A inhibitor; InterPro: IPR004231 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family is represented by the well-characterised metallocarboxypeptidase A inhibitor (MCPI) from potatoes, which belongs to the MEROPS inhibitor family I37, clan IE. It inhibits metallopeptidases belonging to MEROPS peptidase family M14, carboxypeptidase A. In Russet Burbank potatoes, it is a mixture of approximately equal amounts of two polypeptide chains containing 38 or 39 amino acid residues. The chains differ in their amino terminal sequence only [] and are resistant to fragmentation by proteases []. The structure of the complex between bovine carboxypeptidase A and the 39-amino-acid carboxypeptidase A inhibitor from potatoes has been determined at 2.5-A resolution []. The potato inhibitor is synthesised as a precursor, having a 29 residue N-terminal signal peptide, a 27 residue pro-peptide, the 39 residue mature inhibitor region and a 7 residue C-terminal extension. The 7 residue C-terminal extension is involved in inhibitor inactivation and may be required for targeting to the vacuole where the mature active inhibitor accumulates []. The N-terminal region and the mature inhibitor are weakly related to other solananaceous proteins found in this entry, from potato, tomato and henbane, which have been incorrectly described as metallocarboxipeptidase inhibitors [].; GO: 0008191 metalloendopeptidase inhibitor activity; PDB: 4CPA_I 1H20_A 2HLG_A.
Probab=23.56 E-value=43 Score=19.08 Aligned_cols=21 Identities=29% Similarity=0.670 Sum_probs=13.4
Q ss_pred CCCCCCCCCCCCCCCCceEEC
Q psy17082 45 NSTCTTFCRPRDDKFGHFTCD 65 (104)
Q Consensus 45 G~~C~~~C~~~~~~~g~g~C~ 65 (104)
-..|.++|..++||+|...|.
T Consensus 5 ~~tCn~~C~t~sDC~g~tlC~ 25 (46)
T PF02977_consen 5 LGTCNKYCNTNSDCSGITLCQ 25 (46)
T ss_dssp -TTTT-B-SSSCCCTTSSSS-
T ss_pred ccccCCccccCccccceeehH
Confidence 356889999888888766654
No 52
>KOG3509|consensus
Probab=20.42 E-value=1.7e+02 Score=26.66 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=33.2
Q ss_pred CceeEEEecEEEecCCCCCCCCCCC---CCCCCCCCCCceEECCCCC---eecCCCCCCCCCC
Q psy17082 26 GKTARITYRVRVQCDLHYFNSTCTT---FCRPRDDKFGHFTCDSNGD---KVCIAGWKGTNCE 82 (104)
Q Consensus 26 ~~~~~l~~~~r~~C~~g~~G~~C~~---~C~~~~~~~g~g~C~~~G~---c~C~~Gw~G~~C~ 82 (104)
+.....-+..+|.|.++|+|..|.. .|.+...-.--++|..... +.|.+| .|..+.
T Consensus 418 g~c~p~~~~~~c~c~~g~~G~~c~d~~~~~~~~~~g~y~~t~~~~~~~~~~~c~pg-~g~~~~ 479 (964)
T KOG3509|consen 418 GPCLQTLEGKQCLCPPGYTGDSCEDCMNGCDRSPNGSYLGTCVPIQGKRCEYCGPG-AGAPTA 479 (964)
T ss_pred ccccccccccceeccccccCchhhccCccccccCCccccceEeccCCCcceeecCC-CCCccc
Confidence 3333444556889999999988775 3333111111235665433 788888 777664
Done!