RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy17082
         (104 letters)



>gnl|CDD|144855 pfam01414, DSL, Delta serrate ligand. 
          Length = 63

 Score = 85.9 bits (213), Expect = 8e-24
 Identities = 31/63 (49%), Positives = 39/63 (61%)

Query: 19 WHTLNHKGKTARITYRVRVQCDLHYFNSTCTTFCRPRDDKFGHFTCDSNGDKVCIAGWKG 78
          W T  H      + Y++RV CD +Y+   C  FCRPRDD FGH+TCD NG+K C+ GW G
Sbjct: 1  WSTDLHIVGRTNLEYQIRVTCDENYYGEGCNKFCRPRDDFFGHYTCDENGNKRCLNGWMG 60

Query: 79 TNC 81
            C
Sbjct: 61 PYC 63


>gnl|CDD|128366 smart00051, DSL, delta serrate ligand. 
          Length = 63

 Score = 83.5 bits (207), Expect = 5e-23
 Identities = 32/63 (50%), Positives = 40/63 (63%)

Query: 19 WHTLNHKGKTARITYRVRVQCDLHYFNSTCTTFCRPRDDKFGHFTCDSNGDKVCIAGWKG 78
          W T  H G    + Y++RV CD +Y+   C  FCRPRDD FGH+TCD NG+K C+ GW G
Sbjct: 1  WSTDLHIGGRTFLEYQIRVTCDENYYGEGCNKFCRPRDDFFGHYTCDENGNKGCLEGWMG 60

Query: 79 TNC 81
            C
Sbjct: 61 PYC 63


>gnl|CDD|105955 PRK12820, PRK12820, bifunctional aspartyl-tRNA
          synthetase/aspartyl/glutamyl-tRNA amidotransferase
          subunit C; Provisional.
          Length = 706

 Score = 28.0 bits (62), Expect = 0.98
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 7/27 (25%)

Query: 50 TFCRPRDDKFGHFTCDSNGDKVCIAGW 76
          +FC       GH + D  G +VC+AGW
Sbjct: 7  SFC-------GHLSLDDTGREVCLAGW 26


>gnl|CDD|144440 pfam00845, Gemini_BL1, Geminivirus BL1 movement protein.
          Geminiviruses encode two movement proteins that are
          essential for systemic infection of their host but
          dispensable for replication and encapsidation.
          Length = 276

 Score = 27.3 bits (61), Expect = 1.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 27 KTARITYRVRVQCDLHYFNST 47
            A  T+ +R   DLHYF+S+
Sbjct: 75 LQASFTFPIRCNIDLHYFSSS 95


>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
          Validated.
          Length = 647

 Score = 27.5 bits (62), Expect = 1.2
 Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 4/23 (17%)

Query: 77 KGTNCETAVCKEGCHPTHGKCDV 99
          KG NCET +    C    G+CD 
Sbjct: 60 KGLNCETGITATPC----GECDN 78


>gnl|CDD|164889 PHA02067, PHA02067, hypothetical protein.
          Length = 221

 Score = 27.3 bits (60), Expect = 1.2
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 2   RPIEEASFSGILLPSAEWHTLNHKGKTARITYR 34
           +PI  +S   ++      +T  + G+    TYR
Sbjct: 115 KPIGSSSVGQLITQFKNGNTAVYNGQYLDATYR 147


>gnl|CDD|239811 cd04316, ND_PkAspRS_like_N, ND_PkAspRS_like_N: N-terminal,
          anticodon recognition domain of the type found in the
          homodimeric non-discriminating (ND) Pyrococcus
          kodakaraensis aspartyl-tRNA synthetase (AspRS).  This
          domain is a beta-barrel domain (OB fold) involved in
          binding the tRNA anticodon stem-loop.  P. kodakaraensis
          AspRS is a class 2b aaRS. aaRSs catalyze the specific
          attachment of amino acids (AAs) to their cognate tRNAs
          during protein biosynthesis. This 2-step reaction
          involves i) the activation the AA by ATP in the
          presence of magnesium ions, followed by ii) the
          transfer of  the activated AA to the terminal ribose of
          tRNA.  In the case of the class2b aaRSs, the activated
          AA is attached to the 3'OH of the terminal ribose. P.
          kodakaraensis ND-AspRS can charge both tRNAAsp and
          tRNAAsn. Some of the enzymes in this group may be
          discriminating, based on the presence of homologs of
          asparaginyl-tRNA synthetase (AsnRS) in their completed
          genomes.
          Length = 108

 Score = 26.5 bits (59), Expect = 1.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)

Query: 63 TCDSNGDKVCIAGW 76
          T + +G++V +AGW
Sbjct: 7  TPELDGEEVTVAGW 20


>gnl|CDD|147639 pfam05572, Peptidase_M43, Pregnancy-associated plasma protein-A. 
          Pregnancy-associated plasma protein A (PAPP-A) is a
          metallo-protease belonging to Merops family M43. It
          cleaves insulin-like growth factor (IGF) binding
          protein-4 (IGFBP-4), causing a dramatic reduction in
          its affinity for IGF-I and -II. Through this mechanism,
          PAPP-A is a regulator of IGF bioactivity in several
          systems, including the human ovary and the
          cardiovascular system.
          Length = 152

 Score = 24.8 bits (54), Expect = 7.9
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 13/54 (24%)

Query: 28 TARITYRVRVQCDLHYFNSTCTTFCRPRDDKFGHF---------TCDSNGDKVC 72
           AR+T+           +ST T F      +FGHF          CD  GD V 
Sbjct: 50 VARVTFNGAYL----GADSTSTNFSSTLTHEFGHFLGLRHTFEGGCDRGGDGVP 99


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.138    0.489 

Gapped
Lambda     K      H
   0.267   0.0719    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,967,762
Number of extensions: 370943
Number of successful extensions: 255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 16
Length of query: 104
Length of database: 10,937,602
Length adjustment: 69
Effective length of query: 35
Effective length of database: 7,877,176
Effective search space: 275701160
Effective search space used: 275701160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.2 bits)