RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17082
(104 letters)
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 72.0 bits (177), Expect = 1e-17
Identities = 39/81 (48%), Positives = 49/81 (60%)
Query: 23 NHKGKTARITYRVRVQCDLHYFNSTCTTFCRPRDDKFGHFTCDSNGDKVCIAGWKGTNCE 82
+H I R V CD +Y+ C FCRPRDD FGH+ CD NG+K C+ GW G C
Sbjct: 5 HHHHHHGSIEGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPECN 64
Query: 83 TAVCKEGCHPTHGKCDVPGLC 103
A+C++GC P HG C +PG C
Sbjct: 65 RAICRQGCSPKHGSCKLPGDC 85
Score = 33.5 bits (77), Expect = 0.005
Identities = 8/45 (17%), Positives = 11/45 (24%)
Query: 60 GHFTCDSNGDKVCIAGWKGTNCETAVCKEGCHPTHGKCDVPGLCE 104
H + + C + G C H CD G
Sbjct: 9 HHGSIEGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKT 53
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 36.0 bits (83), Expect = 8e-04
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 60 GHFTCDSNGDKVCIAGWKGTNCETAVCKEGCHPTHGKCDVPGLCE 104
C+ C G+ G +CE A+C C G C PG C
Sbjct: 157 NGGFCNERRICECPDGFHGPHCEKALCTPRCM-NGGLCVTPGFCI 200
Score = 35.2 bits (81), Expect = 0.002
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 60 GHFTCDSNGDKVCIAGWKGTNCETAVCKEGCHPTHGKCDVPGLCE 104
C C G++G C VC+ GC HG C P C+
Sbjct: 253 NGGKCIGKSKCKCSKGYQGDLCSKPVCEPGCGA-HGTCHEPNKCQ 296
Score = 33.7 bits (77), Expect = 0.006
Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 38 QCDLHYFNSTCTTFCRPRDDKFGHFTCDSNGDKVCIAGWKGTNCETAVCKEGCHPTHGKC 97
+C + C C + G +C G+ G NC+ A C C G C
Sbjct: 168 ECPDGFHGPHCEKALCTPRCM-NGGLCVTPGFCICPPGFYGVNCDKANCSTTCFN-GGTC 225
Query: 98 DVPGLCE 104
PG C
Sbjct: 226 FYPGKCI 232
Score = 32.5 bits (74), Expect = 0.012
Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 38 QCDLHYFNSTCTTFCRPRDDKFGHFTCDSNGDKVCIAGWKGTNCETAVCKEGCHPTHGKC 97
C ++ C F TC G +C G +G CE + C + C GKC
Sbjct: 200 ICPPGFYGVNCDKANCS-TTCFNGGTCFYPGKCICPPGLEGEQCEISKCPQPCR-NGGKC 257
Query: 98 DVPGLCE 104
C+
Sbjct: 258 IGKSKCK 264
Score = 26.0 bits (57), Expect = 2.9
Identities = 7/30 (23%), Positives = 8/30 (26%)
Query: 63 TCDSNGDKVCIAGWKGTNCETAVCKEGCHP 92
TC C GW G +C
Sbjct: 288 TCHEPNKCQCQEGWHGRHCNKRYEASLIGT 317
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 33.7 bits (76), Expect = 0.004
Identities = 10/56 (17%), Positives = 14/56 (25%), Gaps = 6/56 (10%)
Query: 36 RVQCDLHYFNSTCTTFCRPRDDKFGHFTCDSNGDKVCIAGWKGTNCETAVCKEGCH 91
+ C CR C+ C G+ G +CE H
Sbjct: 139 NAIFFKTCQQAECPGGCR------NGGFCNERRICECPDGFHGPHCEGTKHHHHHH 188
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 32.3 bits (73), Expect = 0.018
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 60 GHFTCDSNGDKVCIAGWKGTNCETAVCKEGCHPTHGKCDVPGLC 103
+ C G C GW+G C TA C+ C G C P C
Sbjct: 400 RNGYCTPTGKCCCSPGWEGDFCRTAKCEPACR-HGGVCVRPNKC 442
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 32.4 bits (73), Expect = 0.019
Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 8/68 (11%)
Query: 38 QCDLHYFNSTCTTFCRPRDDKFGHFTCDSNGDKVCIAGWKGTNCETAVCKEGCHPTHG-K 96
+CD C GH C GD +C + W G C + C ++G
Sbjct: 522 ECDDFSCVRYKGEMCS------GHGQCS-CGDCLCDSDWTGYYCNCTTRTDTCMSSNGLL 574
Query: 97 CDVPGLCE 104
C G CE
Sbjct: 575 CSGRGKCE 582
Score = 26.2 bits (57), Expect = 2.5
Identities = 8/61 (13%), Positives = 12/61 (19%), Gaps = 7/61 (11%)
Query: 39 CDLHYFNSTCTTFCRPRDDKFGHFTCDSNGDKV-CIAGWKGTNCETAVCKEGCHPTHGKC 97
+ TC C + V C +G + C C
Sbjct: 589 IQPGSYGDTCEKCPT------CPDACTFKKECVECKKFDRGALHDENTCNRYCRDEIESV 642
Query: 98 D 98
Sbjct: 643 K 643
Score = 24.7 bits (53), Expect = 7.0
Identities = 7/39 (17%), Positives = 9/39 (23%)
Query: 52 CRPRDDKFGHFTCDSNGDKVCIAGWKGTNCETAVCKEGC 90
G C GW G+ CE +
Sbjct: 442 EPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRP 480
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 30.5 bits (68), Expect = 0.090
Identities = 14/57 (24%), Positives = 15/57 (26%), Gaps = 5/57 (8%)
Query: 52 CRPRDDKFGHFTCDSNGDKV-----CIAGWKGTNCETAVCKEGCHPTHGKCDVPGLC 103
CR RD C G C G+ G NCE G C
Sbjct: 425 CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNS 481
Score = 29.3 bits (65), Expect = 0.19
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 45 NSTCTTFCRPRDDKFGHFTCDSNGDKVCIAGWKGTNCETAVCKEGC-HPTHGKCDVPGLC 103
C + G C G C G++G+ C+ EGC +P +C G C
Sbjct: 516 TINCERYNGQVCGGPGRGLCF-CGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRC 574
Query: 104 E 104
Sbjct: 575 R 575
Score = 27.0 bits (59), Expect = 1.1
Identities = 10/70 (14%), Positives = 13/70 (18%), Gaps = 5/70 (7%)
Query: 38 QCDLHYFNSTCTTFCRPRDDKFGHFTCDSNGDKVCIAGWKGTNCETAVCKEGCHPT---H 94
+C Y C + +C G G NC A
Sbjct: 580 ECHSGYQLPLCQECPGCPSPCGKYISCAEC--LKFEKGPFGKNCSAACPGLQLSNNPVKG 637
Query: 95 GKCDVPGLCE 104
C
Sbjct: 638 RTCKERDSEG 647
Score = 26.6 bits (58), Expect = 1.6
Identities = 6/52 (11%), Positives = 14/52 (26%), Gaps = 3/52 (5%)
Query: 38 QCDLHYFNSTCTTFCRPR---DDKFGHFTCDSNGDKVCIAGWKGTNCETAVC 86
+ + F C+ C ++ TC + C + +
Sbjct: 611 KFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQDGMDR 662
Score = 24.3 bits (52), Expect = 9.4
Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 60 GHFTCDSNGDKVCIAGWKGTNCETAVCKEGCHPTHGKC 97
G C C +G++ C+ + C
Sbjct: 570 GRGRCRC-NVCECHSGYQLPLCQECPGCPSPCGKYISC 606
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular
MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 29.3 bits (66), Expect = 0.15
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 45 NSTCTTFCRPRDDKFGHFTCDSNGDKVCIAGWKGTNCETAV 85
TC R D F + C C G+ G +C+ +
Sbjct: 63 GGTCEISEAYRGDTFIGYVCK------CPRGFNGIHCQHNI 97
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 28.5 bits (64), Expect = 0.24
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 38 QCDLHYFNSTCTTFCRPR---DDKFGHFTCDSNGDKVCIAGWKGTNCETAVCKEGCHPTH 94
QC + C + C D G F+CD C +GW+G C+ V C +
Sbjct: 8 QCLVLPLEHPCASLCCGHGTCIDGIGSFSCD------CRSGWEGRFCQREVSFLNCSLDN 61
Query: 95 GKCD 98
G C
Sbjct: 62 GGCT 65
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain,
heterodimer, internal cavity, activator, angiogenesis,
congenital erythrocytosis; 1.17A {Homo sapiens} PDB:
3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 2b02_A*
2k7s_A 2a24_B
Length = 121
Score = 28.0 bits (63), Expect = 0.30
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 22 LNHKGKTARITYRVRVQCDLHY--FNSTCTTFCRPRDDKFGHFTC 64
+ KG+ + +R R + + + ++ TF P D+ + C
Sbjct: 67 VKLKGQVLSVMFRFRSK-NQEWLWMRTSSFTFQNPYSDEIEYIIC 110
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 28.1 bits (62), Expect = 0.45
Identities = 21/76 (27%), Positives = 26/76 (34%), Gaps = 10/76 (13%)
Query: 39 CDLHYFNSTCTTFCRPRDDKFGHFTCDSNGDK-VCIAGWKGTNCETAV--------CKEG 89
C+LH F TC C ++ + C + C GWKG C A CK
Sbjct: 233 CELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLR 292
Query: 90 CH-PTHGKCDVPGLCE 104
C CD C
Sbjct: 293 CSCNNGEMCDRFQGCL 308
Score = 27.0 bits (59), Expect = 1.3
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
Query: 38 QCDLHYFNSTCTTFCRPRDDKFGHFTCDS-NGDKVCIAGWKGTNCETAVCKEGCH--PTH 94
+C+ + C C + C G+ +C G+ G CE A C+
Sbjct: 188 RCEAQKWGPECNHLCTAC---MNNGVCHEDTGECICPPGFMGRTCEKA-CELHTFGRTCK 243
Query: 95 GKCDVPGLC 103
+C C
Sbjct: 244 ERCSGQEGC 252
Score = 25.8 bits (56), Expect = 2.7
Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 63 TCDSNGDKVCIAGWKGTNCETAVCKEGCHPTHGKCDVPGLCE 104
CD +C GW+G CE D+P E
Sbjct: 300 MCDRFQGCLCSPGWQGLQCEREGIPRMTPK---IVDLPDHIE 338
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 0.61
Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 39/99 (39%)
Query: 2 RPIEEASFSGILLPSAEWHTLNHKGKTARI----------------------TYRVRVQC 39
RP ++ S S L + +G A++ TY V V
Sbjct: 135 RPFDKKSNS-ALFRAVG------EGN-AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD 186
Query: 40 DLHYFNSTCTTFCRPRDDKFGHFT--CDSNGDKVCIAGW 76
+ + T + R D FT + I W
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLN-------ILEW 218
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 26.9 bits (58), Expect = 1.4
Identities = 12/52 (23%), Positives = 13/52 (25%), Gaps = 7/52 (13%)
Query: 43 YFNSTCTTFCRPRDDKFGHFTCDSNGDKVCIAGWKGTNCETAVCKEGCHPTH 94
Y C C GH C G VC W G C+
Sbjct: 532 YIGDGCLDMCS------GHGRCV-QGSCVCDEQWGGLYCDEPETSLPTQLKD 576
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian
clock, PAS domain, transcription, activator, biolo
rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Length = 121
Score = 26.1 bits (58), Expect = 1.8
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 19 WHTLNHKGKTARITYRVRVQCDLHY--FNSTCTTFCRPRDDKFGHFTC 64
L K K +Y+ R + D + S +F P + +
Sbjct: 65 KAVLQSKEKILTDSYKFRAK-DGSFVTLKSQWFSFTNPDTKELEYIVS 111
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 26.1 bits (57), Expect = 2.2
Identities = 10/34 (29%), Positives = 11/34 (32%), Gaps = 6/34 (17%)
Query: 61 HFTCDSNGDKVCIAGWKGTNCETAVCKEGCHPTH 94
F C C GW+ CE G H H
Sbjct: 396 EFKC------RCYPGWQAPWCERKSMWTGHHHHH 423
>2vh0_B Activated factor XA light chain; serine protease, EGF-like
domain, blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 25.3 bits (56), Expect = 2.8
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 57 DKFGHFTCDSNGDKVCIAGWKGTNCETAVCKEGCHPTHGKCD 98
D G +TC C+ G++G NCE ++ C +G CD
Sbjct: 58 DGLGEYTC------TCLEGFEGKNCELFT-RKLCSLDNGDCD 92
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 427
Score = 25.7 bits (56), Expect = 3.0
Identities = 12/57 (21%), Positives = 17/57 (29%)
Query: 47 TCTTFCRPRDDKFGHFTCDSNGDKVCIAGWKGTNCETAVCKEGCHPTHGKCDVPGLC 103
C + ++ TC C G C+ C +CDVP C
Sbjct: 228 DCGSPANCQNPCCDAATCKLKPGAECGNGLCCYQCKIKTAGTVCRRARDECDVPEHC 284
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 25.7 bits (55), Expect = 3.4
Identities = 13/68 (19%), Positives = 16/68 (23%), Gaps = 9/68 (13%)
Query: 37 VQCDLHYFNSTCTTFCRPRDDKFGHFTCDSNGDKVCIAGWKGTNCETAVCKEGCHPTHGK 96
V C H S C C+ D H ++ C C
Sbjct: 52 VWCQNHKQCSKCLEPCKESGDLRKHQCQSFCEP--------LFPKKSYECLTSCEFLKYI 103
Query: 97 CDV-PGLC 103
V G C
Sbjct: 104 LLVKQGDC 111
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 25.4 bits (56), Expect = 3.5
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 8/41 (19%)
Query: 57 DKFGHFTCDSNGDKVCIAGWKGTNCETAVCKEGCHPTHGKC 97
D +TC C G++G+NCE A + CHP
Sbjct: 21 DSIWGYTCT------CSPGYEGSNCELAKNE--CHPERTDG 53
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL,
ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A*
3kyc_A* 3kyd_A*
Length = 346
Score = 25.5 bits (56), Expect = 3.9
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 70 KVCIAGWKGTNCETA 84
+V + G KG E A
Sbjct: 38 RVLLVGLKGLGAEIA 52
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 25.2 bits (54), Expect = 4.7
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 63 TCDSNGDKVCIAGWKGTNCETAVCKEG--CHPTHGKC 97
TC +N +C A + G CE C+E C G+
Sbjct: 378 TCHNNVRCLCPAAYTGILCEKLRCEEAGSCGSDSGQG 414
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 24.9 bits (55), Expect = 4.8
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 6/29 (20%)
Query: 57 DKFGHFTCDSNGDKVCIAGWKGTNCETAV 85
D+ G F C C+ G++G +CE
Sbjct: 61 DQIGEFQCI------CMPGYEGVHCEVNT 83
Score = 24.5 bits (54), Expect = 6.1
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 6/29 (20%)
Query: 57 DKFGHFTCDSNGDKVCIAGWKGTNCETAV 85
+ G F C C+ G+ G CE V
Sbjct: 23 NTLGSFECQ------CLQGYTGPRCEIDV 45
Score = 24.1 bits (53), Expect = 8.9
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 6/29 (20%)
Query: 57 DKFGHFTCDSNGDKVCIAGWKGTNCETAV 85
DK F C C G+ G C+ +
Sbjct: 99 DKINEFQC------ECPTGFTGHLCQVDL 121
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 23.2 bits (51), Expect = 5.6
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 6/26 (23%)
Query: 57 DKFGHFTCDSNGDKVCIAGWKGTNCE 82
D + C C G++G NCE
Sbjct: 19 DDINSYECW------CPFGFEGKNCE 38
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase,
apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus
atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Length = 419
Score = 25.0 bits (54), Expect = 5.9
Identities = 12/66 (18%), Positives = 18/66 (27%), Gaps = 7/66 (10%)
Query: 38 QCDLHYFNSTCTTFCRPRDDKFGHFTCDSNGDKVCIAGWKGTNCETAVCKEGCHPTHGKC 97
+CD + C TC C G C+ + C + +C
Sbjct: 224 ECDCGTPENCQNECCDAA-------TCKLKSGSQCGHGDCCEQCKFSKSGTECRASMSEC 276
Query: 98 DVPGLC 103
D C
Sbjct: 277 DPAEHC 282
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 24.6 bits (54), Expect = 6.3
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 6/29 (20%)
Query: 57 DKFGHFTCDSNGDKVCIAGWKGTNCETAV 85
D+ + C C+ ++G NCET
Sbjct: 63 DQLQSYIC------FCLPAFEGRNCETHK 85
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 24.5 bits (52), Expect = 8.0
Identities = 10/43 (23%), Positives = 12/43 (27%), Gaps = 6/43 (13%)
Query: 52 CRPRDDKFGHFTCDSNGDKVCIAGWKGTNCETAVCKEGCHPTH 94
D GH C G C G G CE + +
Sbjct: 466 APHCSDGQGHLQC---GVCSCAPGRLGRLCE---SRGLENLYF 502
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 24.4 bits (52), Expect = 9.6
Identities = 9/41 (21%), Positives = 11/41 (26%)
Query: 63 TCDSNGDKVCIAGWKGTNCETAVCKEGCHPTHGKCDVPGLC 103
C D C G C+ C CD+ C
Sbjct: 244 KCTLTQDSQCSDGLCCKKCKFQPMGTVCREAVNDCDIRETC 284
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 23.8 bits (52), Expect = 10.0
Identities = 8/47 (17%), Positives = 12/47 (25%), Gaps = 8/47 (17%)
Query: 57 DKFGHFTCDSNGDKVCIAGWKGTNCETAV--CKEGCHPTHGKCDVPG 101
D + C C G++G NCE +
Sbjct: 64 DDINSYEC------WCQVGFEGKNCELDATCNIKNGRCKQFCKTGAD 104
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.489
Gapped
Lambda K H
0.267 0.0482 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,652,749
Number of extensions: 84883
Number of successful extensions: 330
Number of sequences better than 10.0: 1
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 154
Length of query: 104
Length of database: 6,701,793
Length adjustment: 69
Effective length of query: 35
Effective length of database: 4,775,244
Effective search space: 167133540
Effective search space used: 167133540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.0 bits)