BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17083
(60 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 9 IRASVQCRPGWRGEFCDQCKPYPGCKHGYCNGSSWQCICDTNWGGILCDQ 58
+ +C+ GW+G +CD+C P+PGC HG CN WQC+C+TNWGG LCD+
Sbjct: 81 LPGDCRCQYGWQGLYCDKCIPHPGCVHGICN-EPWQCLCETNWGGQLCDK 129
>pdb|2KB9|A Chain A, Human Jagged-1, Exon 6
Length = 44
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
Query: 14 QCRPGWRGEFCDQCKPYPGCKHGYCNGSSWQCICDTNWGGILCDQ 58
+C+ GW+G +CD+C P+PGC HG CN WQC+C+TNWGG LCD+
Sbjct: 1 RCQYGWQGLYCDKCIPHPGCVHGICN-EPWQCLCETNWGGQLCDK 44
>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
Length = 458
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 15 CRPGWRGEFCDQCKPYPGCKHGYCNGSSWQCICDTNWGGILCDQ 58
C PGW G+FC K P C+HG +C+C + G C+Q
Sbjct: 412 CSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQ 455
>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 463
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 15 CRPGWRGEFCDQCKPYPGCKHGYCNGSSWQCICDTNWGGILCDQ 58
C PGW G+FC K P C+HG +C+C + G C+Q
Sbjct: 412 CSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQ 455
>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 457
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 15 CRPGWRGEFCDQCKPYPGCKHGYCNGSSWQCICDTNWGGILCDQ 58
C PGW G+FC K P C+HG +C+C + G C+Q
Sbjct: 412 CSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQ 455
>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
Length = 481
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 15 CRPGWRGEFCDQCKPYPGCKHGYCNGSSWQCICDTNWGGILCD 57
C PGW G+FC K P C+HG +C+C + G C+
Sbjct: 433 CSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCE 475
>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
pdb|3HO4|B Chain B, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
Length = 481
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 15 CRPGWRGEFCDQCKPYPGCKHGYCNGSSWQCICDTNWGGILCD 57
C PGW G+FC K P C+HG +C+C + G C+
Sbjct: 433 CSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCE 475
>pdb|3A7Q|A Chain A, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 725
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 35 HGYCNGSSWQCICDTNWGGILCDQ 58
HG C S C+CD WGG+ CD+
Sbjct: 544 HGRCVQGS--CVCDEQWGGLYCDE 565
>pdb|2E26|A Chain A, Crystal Structure Of Two Repeat Fragment Of Reelin
Length = 725
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 35 HGYCNGSSWQCICDTNWGGILCDQ 58
HG C S C+CD WGG+ CD+
Sbjct: 544 HGRCVQGS--CVCDEQWGGLYCDE 565
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 15 CRPGWRGEFC----DQCKPYPGCKHGYC--NGSSWQCICDTNWGGILC 56
C PG+ G C D+C P +G C + +QC C T + G LC
Sbjct: 70 CMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLC 117
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 15 CRPGWRGEFC----DQCKPYPGCKHGYC--NGSSWQCICDTNWGGILC 56
C PG+ G C D+C P +G C + +QC C T + G LC
Sbjct: 68 CMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLC 115
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 8 NIRASVQCRPGWRGEFCDQCKPYPGCKHGYCNGSSWQCICDTNWGGILCDQGH 60
N R +C G+ G C++ P C +G + CIC + G+ CD+ +
Sbjct: 162 NERRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVNCDKAN 214
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.144 0.569
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,273,633
Number of Sequences: 62578
Number of extensions: 77830
Number of successful extensions: 265
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 44
length of query: 60
length of database: 14,973,337
effective HSP length: 31
effective length of query: 29
effective length of database: 13,033,419
effective search space: 377969151
effective search space used: 377969151
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)