Query psy17083
Match_columns 60
No_of_seqs 146 out of 1072
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 21:25:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17083.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17083hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4289|consensus 98.9 3.1E-09 6.7E-14 72.6 4.0 50 9-59 1220-1276(2531)
2 KOG1225|consensus 98.6 7.5E-08 1.6E-12 60.8 4.8 21 6-26 260-280 (525)
3 KOG1219|consensus 98.6 7.7E-08 1.7E-12 68.3 4.2 50 9-59 3884-3940(4289)
4 KOG1225|consensus 98.6 1.7E-07 3.7E-12 59.2 5.3 54 3-58 288-342 (525)
5 KOG1226|consensus 98.3 1.7E-06 3.6E-11 56.5 4.8 57 1-59 556-622 (783)
6 PF07974 EGF_2: EGF-like domai 98.1 4.3E-06 9.2E-11 34.7 2.3 22 3-24 9-32 (32)
7 smart00051 DSL delta serrate l 98.1 6.9E-06 1.5E-10 38.9 3.3 45 11-56 17-63 (63)
8 PF12661 hEGF: Human growth fa 98.0 2.9E-06 6.4E-11 28.6 1.0 12 13-24 2-13 (13)
9 PF00008 EGF: EGF-like domain 97.9 1E-05 2.2E-10 33.4 2.0 28 27-55 1-32 (32)
10 KOG1226|consensus 97.8 3.6E-05 7.7E-10 50.6 4.6 54 2-57 516-580 (783)
11 KOG4289|consensus 97.8 3.8E-05 8.2E-10 53.8 3.9 55 3-58 1248-1317(2531)
12 PF07974 EGF_2: EGF-like domai 97.8 5E-05 1.1E-09 31.5 2.9 24 33-56 8-32 (32)
13 KOG1219|consensus 97.6 5.7E-05 1.2E-09 54.8 3.2 48 9-57 3922-3977(4289)
14 smart00179 EGF_CA Calcium-bind 97.4 0.00043 9.3E-09 28.9 3.5 25 33-57 11-39 (39)
15 cd00054 EGF_CA Calcium-binding 97.1 0.0013 2.9E-08 26.9 3.5 25 33-57 11-38 (38)
16 smart00181 EGF Epidermal growt 97.1 0.0014 3E-08 26.8 3.4 25 33-57 8-35 (35)
17 PF01414 DSL: Delta serrate li 97.0 0.00024 5.1E-09 33.7 0.7 47 9-56 15-63 (63)
18 KOG4260|consensus 97.0 0.00083 1.8E-08 40.2 3.0 43 14-57 131-182 (350)
19 cd00053 EGF Epidermal growth f 96.8 0.0033 7.2E-08 25.2 3.3 24 33-56 8-35 (36)
20 KOG0994|consensus 96.7 0.0024 5.1E-08 44.5 3.3 50 9-58 1082-1147(1758)
21 KOG1214|consensus 96.5 0.0042 9.2E-08 42.1 3.8 45 9-54 807-859 (1289)
22 PHA02887 EGF-like protein; Pro 96.5 0.0034 7.3E-08 33.2 2.7 26 33-58 94-123 (126)
23 smart00180 EGF_Lam Laminin-typ 96.3 0.0059 1.3E-07 27.0 2.5 21 9-29 16-36 (46)
24 cd00055 EGF_Lam Laminin-type e 96.3 0.006 1.3E-07 27.3 2.6 21 9-29 17-37 (50)
25 PF00053 Laminin_EGF: Laminin 96.1 0.002 4.2E-08 28.7 0.5 22 8-29 15-36 (49)
26 PHA03099 epidermal growth fact 96.1 0.0057 1.2E-07 32.8 2.3 26 33-58 53-82 (139)
27 PF07645 EGF_CA: Calcium-bindi 95.8 0.014 3.1E-07 25.1 2.6 20 33-52 12-34 (42)
28 KOG1217|consensus 94.6 0.095 2E-06 31.9 4.4 47 10-56 251-306 (487)
29 KOG0994|consensus 94.3 0.066 1.4E-06 37.8 3.3 51 8-58 1034-1099(1758)
30 PF12947 EGF_3: EGF domain; I 94.2 0.048 1E-06 22.9 1.7 20 35-54 11-32 (36)
31 KOG1217|consensus 94.1 0.13 2.8E-06 31.4 4.2 50 9-58 150-207 (487)
32 PF12662 cEGF: Complement Clr- 92.8 0.075 1.6E-06 20.5 1.1 10 11-20 2-11 (24)
33 PHA02887 EGF-like protein; Pro 92.7 0.11 2.4E-06 27.6 1.9 18 9-26 106-123 (126)
34 KOG4260|consensus 90.9 0.19 4.1E-06 30.5 1.8 19 8-26 165-183 (350)
35 PHA03099 epidermal growth fact 90.3 0.23 5.1E-06 26.8 1.7 18 9-26 65-82 (139)
36 PF14670 FXa_inhibition: Coagu 87.3 0.55 1.2E-05 19.7 1.5 17 37-53 11-29 (36)
37 KOG1836|consensus 86.9 0.65 1.4E-05 34.1 2.5 48 11-58 695-760 (1705)
38 KOG3607|consensus 85.3 0.81 1.7E-05 30.9 2.2 24 3-26 633-657 (716)
39 KOG3516|consensus 85.3 0.89 1.9E-05 32.4 2.4 33 26-59 547-583 (1306)
40 KOG1836|consensus 84.5 2.8 6.1E-05 31.1 4.6 51 8-58 956-1022(1705)
41 KOG1218|consensus 84.3 4.3 9.2E-05 23.9 4.8 44 8-51 159-207 (316)
42 PF12955 DUF3844: Domain of un 84.1 1.1 2.4E-05 23.2 2.0 26 33-58 15-61 (103)
43 KOG3607|consensus 80.9 1.4 3E-05 29.9 2.0 25 33-58 632-657 (716)
44 PF00954 S_locus_glycop: S-loc 79.4 3.5 7.6E-05 21.0 2.9 28 27-54 80-109 (110)
45 KOG3516|consensus 78.3 2.7 5.8E-05 30.2 2.7 33 27-60 958-994 (1306)
46 PF10530 Toxin_35: Toxin with 75.2 1.6 3.5E-05 16.6 0.7 14 2-15 10-23 (23)
47 KOG3512|consensus 75.1 6.3 0.00014 25.9 3.6 21 37-57 408-428 (592)
48 PF09064 Tme5_EGF_like: Thromb 73.7 2.4 5.1E-05 17.7 1.0 11 10-20 17-27 (34)
49 KOG3514|consensus 73.6 2.7 5.8E-05 30.2 1.8 31 27-58 626-660 (1591)
50 KOG3512|consensus 64.4 4.2 9.1E-05 26.7 1.2 21 9-29 412-432 (592)
51 KOG0196|consensus 61.9 11 0.00024 26.6 2.8 46 8-53 256-318 (996)
52 KOG1214|consensus 60.0 32 0.0007 24.7 4.7 43 9-51 714-765 (1289)
53 PF12946 EGF_MSP1_1: MSP1 EGF 58.6 7.7 0.00017 16.5 1.2 18 35-52 10-30 (37)
54 PF01683 EB: EB module; Inter 57.0 17 0.00037 15.8 2.9 29 19-52 17-46 (52)
55 PF04863 EGF_alliinase: Alliin 49.3 9.5 0.00021 17.6 0.8 18 41-58 34-51 (56)
56 cd01475 vWA_Matrilin VWA_Matri 43.5 20 0.00044 20.3 1.7 17 37-53 200-218 (224)
57 KOG3509|consensus 38.1 28 0.00062 24.8 2.0 19 11-29 718-736 (964)
58 PF06247 Plasmod_Pvs28: Plasmo 32.1 27 0.00059 20.2 1.0 20 33-52 8-29 (197)
No 1
>KOG4289|consensus
Probab=98.86 E-value=3.1e-09 Score=72.64 Aligned_cols=50 Identities=28% Similarity=0.909 Sum_probs=44.2
Q ss_pred CCCeeEcCCCCcCCCCC----CCCCCCCCC-CCeEEc--CCCeEEeCCCcccCCCCcC
Q psy17083 9 IRASVQCRPGWRGEFCD----QCKPYPGCK-HGYCNG--SSWQCICDTNWGGILCDQG 59 (60)
Q Consensus 9 ~~~~C~C~~g~~g~~C~----~c~~~~~C~-~g~C~~--~~~~C~C~~g~~G~~C~~~ 59 (60)
+...|.|++||+|.+|+ .|...| |. +|+|.. +.|+|.|.++|+|..|+.+
T Consensus 1220 nglrCrCPpGFTgd~CeTeiDlCYs~p-C~nng~C~srEggYtCeCrpg~tGehCEvs 1276 (2531)
T KOG4289|consen 1220 NGLRCRCPPGFTGDYCETEIDLCYSGP-CGNNGRCRSREGGYTCECRPGFTGEHCEVS 1276 (2531)
T ss_pred CceeEeCCCCCCcccccchhHhhhcCC-CCCCCceEEecCceeEEecCCccccceeee
Confidence 45689999999999997 488888 98 689986 8899999999999999875
No 2
>KOG1225|consensus
Probab=98.62 E-value=7.5e-08 Score=60.77 Aligned_cols=21 Identities=33% Similarity=0.937 Sum_probs=13.7
Q ss_pred CccCCCeeEcCCCCcCCCCCC
Q psy17083 6 GRNIRASVQCRPGWRGEFCDQ 26 (60)
Q Consensus 6 g~~~~~~C~C~~g~~g~~C~~ 26 (60)
|.++.++|+|++||+|.+|++
T Consensus 260 g~c~~G~CIC~~Gf~G~dC~e 280 (525)
T KOG1225|consen 260 GQCVEGRCICPPGFTGDDCDE 280 (525)
T ss_pred ceEeCCeEeCCCCCcCCCCCc
Confidence 456666666666666666654
No 3
>KOG1219|consensus
Probab=98.58 E-value=7.7e-08 Score=68.28 Aligned_cols=50 Identities=24% Similarity=0.725 Sum_probs=44.1
Q ss_pred CCCeeEcCCCCcCCCCC----CCCCCCCCC-CCeEEc--CCCeEEeCCCcccCCCCcC
Q psy17083 9 IRASVQCRPGWRGEFCD----QCKPYPGCK-HGYCNG--SSWQCICDTNWGGILCDQG 59 (60)
Q Consensus 9 ~~~~C~C~~g~~g~~C~----~c~~~~~C~-~g~C~~--~~~~C~C~~g~~G~~C~~~ 59 (60)
..|.|.|++.|.|.+|+ .|..+| |. .|+|++ +.+.|.|+.+|+|..|+.+
T Consensus 3884 ggy~CkCpsqysG~~CEi~~epC~snP-C~~GgtCip~~n~f~CnC~~gyTG~~Ce~~ 3940 (4289)
T KOG1219|consen 3884 GGYKCKCPSQYSGNHCEIDLEPCASNP-CLTGGTCIPFYNGFLCNCPNGYTGKRCEAR 3940 (4289)
T ss_pred CceEEeCcccccCcccccccccccCCC-CCCCCEEEecCCCeeEeCCCCccCceeecc
Confidence 45899999999999997 388899 98 579997 7799999999999999864
No 4
>KOG1225|consensus
Probab=98.57 E-value=1.7e-07 Score=59.23 Aligned_cols=54 Identities=31% Similarity=0.732 Sum_probs=44.9
Q ss_pred CCCCccCCCeeEcCCCCcCCCCCCCCCCCCCC-CCeEEcCCCeEEeCCCcccCCCCc
Q psy17083 3 NRLGRNIRASVQCRPGWRGEFCDQCKPYPGCK-HGYCNGSSWQCICDTNWGGILCDQ 58 (60)
Q Consensus 3 ~~~g~~~~~~C~C~~g~~g~~C~~c~~~~~C~-~g~C~~~~~~C~C~~g~~G~~C~~ 58 (60)
+.|+....++|.|.++|.|..|+.-.....|. +|.|++ ++|.|.+||+|..|.+
T Consensus 288 s~~g~~~~g~CiC~~g~~G~dCs~~~cpadC~g~G~Ci~--G~C~C~~Gy~G~~C~~ 342 (525)
T KOG1225|consen 288 SGGGVCVDGECICNPGYSGKDCSIRRCPADCSGHGKCID--GECLCDEGYTGELCIQ 342 (525)
T ss_pred CCCceecCCEeecCCCccccccccccCCccCCCCCcccC--CceEeCCCCcCCcccc
Confidence 57788888999999999999997533333487 689994 8999999999999975
No 5
>KOG1226|consensus
Probab=98.29 E-value=1.7e-06 Score=56.50 Aligned_cols=57 Identities=26% Similarity=0.702 Sum_probs=41.3
Q ss_pred CCCCCCccCCCeeEcCCCCcCCCCCCCCCCCC--------CC-CCeEEcCCCeEEeCCC-cccCCCCcC
Q psy17083 1 MSNRLGRNIRASVQCRPGWRGEFCDQCKPYPG--------CK-HGYCNGSSWQCICDTN-WGGILCDQG 59 (60)
Q Consensus 1 ~~~~~g~~~~~~C~C~~g~~g~~C~~c~~~~~--------C~-~g~C~~~~~~C~C~~g-~~G~~C~~~ 59 (60)
++++||.+.-+.|+|.+||+|..|+--..... |. +|+|.- ++|.|... |.|..|+..
T Consensus 556 lC~g~G~C~CG~CvC~~GwtG~~C~C~~std~C~~~~G~iCSGrG~C~C--g~C~C~~~~~sG~~CE~c 622 (783)
T KOG1226|consen 556 LCGGHGRCECGRCVCNPGWTGSACNCPLSTDTCESSDGQICSGRGTCEC--GRCKCTDPPYSGEFCEKC 622 (783)
T ss_pred ccCCCCeEeCCcEEcCCCCccCCCCCCCCCccccCCCCceeCCCceeeC--CceEcCCCCcCcchhhcC
Confidence 46789999999999999999999952112222 43 355553 67888775 999999753
No 6
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=98.07 E-value=4.3e-06 Score=34.73 Aligned_cols=22 Identities=23% Similarity=0.569 Sum_probs=11.4
Q ss_pred CCCCccC--CCeeEcCCCCcCCCC
Q psy17083 3 NRLGRNI--RASVQCRPGWRGEFC 24 (60)
Q Consensus 3 ~~~g~~~--~~~C~C~~g~~g~~C 24 (60)
+.||.++ .++|+|++||+|+.|
T Consensus 9 ~~~G~C~~~~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 9 SGHGTCVSPCGRCVCDSGYTGPDC 32 (32)
T ss_pred CCCCEEeCCCCEEECCCCCcCCCC
Confidence 4455544 355555555555543
No 7
>smart00051 DSL delta serrate ligand.
Probab=98.07 E-value=6.9e-06 Score=38.93 Aligned_cols=45 Identities=29% Similarity=0.664 Sum_probs=33.2
Q ss_pred CeeEcCCCCcCCCCCC-CCCCCCCC-CCeEEcCCCeEEeCCCcccCCC
Q psy17083 11 ASVQCRPGWRGEFCDQ-CKPYPGCK-HGYCNGSSWQCICDTNWGGILC 56 (60)
Q Consensus 11 ~~C~C~~g~~g~~C~~-c~~~~~C~-~g~C~~~~~~C~C~~g~~G~~C 56 (60)
+.-.|+++|.|..|+. |.+..... +.+|. ..+.+.|.+||.|+.|
T Consensus 17 ~rv~C~~~~yG~~C~~~C~~~~d~~~~~~Cd-~~G~~~C~~Gw~G~~C 63 (63)
T smart00051 17 IRVTCDENYYGEGCNKFCRPRDDFFGHYTCD-ENGNKGCLEGWMGPYC 63 (63)
T ss_pred EEeeCCCCCcCCccCCEeCcCccccCCccCC-cCCCEecCCCCcCCCC
Confidence 4557999999999974 55432233 45776 4688999999999886
No 8
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=98.01 E-value=2.9e-06 Score=28.63 Aligned_cols=12 Identities=58% Similarity=1.553 Sum_probs=6.1
Q ss_pred eEcCCCCcCCCC
Q psy17083 13 VQCRPGWRGEFC 24 (60)
Q Consensus 13 C~C~~g~~g~~C 24 (60)
|+|++||+|.+|
T Consensus 2 C~C~~G~~G~~C 13 (13)
T PF12661_consen 2 CQCPPGWTGPNC 13 (13)
T ss_dssp EEE-TTEETTTT
T ss_pred ccCcCCCcCCCC
Confidence 555555555544
No 9
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=97.91 E-value=1e-05 Score=33.43 Aligned_cols=28 Identities=29% Similarity=0.907 Sum_probs=21.4
Q ss_pred CCCCCCCCC-CeEEc---CCCeEEeCCCcccCC
Q psy17083 27 CKPYPGCKH-GYCNG---SSWQCICDTNWGGIL 55 (60)
Q Consensus 27 c~~~~~C~~-g~C~~---~~~~C~C~~g~~G~~ 55 (60)
|...| |.+ |+|++ ..+.|.|++||+|+.
T Consensus 1 C~~~~-C~n~g~C~~~~~~~y~C~C~~G~~G~~ 32 (32)
T PF00008_consen 1 CSSNP-CQNGGTCIDLPGGGYTCECPPGYTGKR 32 (32)
T ss_dssp TTTTS-STTTEEEEEESTSEEEEEEBTTEESTT
T ss_pred CCCCc-CCCCeEEEeCCCCCEEeECCCCCccCC
Confidence 34456 885 78986 568999999999964
No 10
>KOG1226|consensus
Probab=97.85 E-value=3.6e-05 Score=50.57 Aligned_cols=54 Identities=28% Similarity=0.792 Sum_probs=41.3
Q ss_pred CCCCCccCCCeeEcCCCCc----CCCCC----CCCCC--CCCC-CCeEEcCCCeEEeCCCcccCCCC
Q psy17083 2 SNRLGRNIRASVQCRPGWR----GEFCD----QCKPY--PGCK-HGYCNGSSWQCICDTNWGGILCD 57 (60)
Q Consensus 2 ~~~~g~~~~~~C~C~~g~~----g~~C~----~c~~~--~~C~-~g~C~~~~~~C~C~~g~~G~~C~ 57 (60)
++++|.+.-++|.|.+... |.+|+ .|... ..|. +|+|.- ++|+|.+||+|.+|+
T Consensus 516 CSgrG~C~CGqC~C~~~~~~~i~G~fCECDnfsC~r~~g~lC~g~G~C~C--G~CvC~~GwtG~~C~ 580 (783)
T KOG1226|consen 516 CSGRGDCVCGQCVCHKPDNGKIYGKFCECDNFSCERHKGVLCGGHGRCEC--GRCVCNPGWTGSACN 580 (783)
T ss_pred cCCCCcEeCCceEecCCCCCceeeeeeeccCcccccccCcccCCCCeEeC--CcEEcCCCCccCCCC
Confidence 5778889999999998877 88885 12221 1265 678874 899999999999986
No 11
>KOG4289|consensus
Probab=97.77 E-value=3.8e-05 Score=53.75 Aligned_cols=55 Identities=33% Similarity=0.820 Sum_probs=41.1
Q ss_pred CCCCc----cCCCeeEcCCCCcCCCCCC------CCCCCCCCC-CeEEc---CCCeEEeCCC-cccCCCCc
Q psy17083 3 NRLGR----NIRASVQCRPGWRGEFCDQ------CKPYPGCKH-GYCNG---SSWQCICDTN-WGGILCDQ 58 (60)
Q Consensus 3 ~~~g~----~~~~~C~C~~g~~g~~C~~------c~~~~~C~~-g~C~~---~~~~C~C~~g-~~G~~C~~ 58 (60)
+.||. ...|+|.|.++|+|.+|+. |.+.- |++ |+|++ +.+.|.|+.| |.++.|+.
T Consensus 1248 ~nng~C~srEggYtCeCrpg~tGehCEvs~~agrCvpGv-C~nggtC~~~~nggf~c~Cp~ge~e~prC~v 1317 (2531)
T KOG4289|consen 1248 GNNGRCRSREGGYTCECRPGFTGEHCEVSARAGRCVPGV-CKNGGTCVNLLNGGFCCHCPYGEFEDPRCEV 1317 (2531)
T ss_pred CCCCceEEecCceeEEecCCccccceeeecccCccccce-ecCCCEEeecCCCceeccCCCcccCCCceEE
Confidence 44555 4568999999999999973 55555 774 68886 6678899885 66777764
No 12
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=97.76 E-value=5e-05 Score=31.47 Aligned_cols=24 Identities=38% Similarity=1.071 Sum_probs=20.4
Q ss_pred CC-CCeEEcCCCeEEeCCCcccCCC
Q psy17083 33 CK-HGYCNGSSWQCICDTNWGGILC 56 (60)
Q Consensus 33 C~-~g~C~~~~~~C~C~~g~~G~~C 56 (60)
|. +|+|+...++|.|.++|+|+.|
T Consensus 8 C~~~G~C~~~~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 8 CSGHGTCVSPCGRCVCDSGYTGPDC 32 (32)
T ss_pred cCCCCEEeCCCCEEECCCCCcCCCC
Confidence 76 7999954489999999999986
No 13
>KOG1219|consensus
Probab=97.62 E-value=5.7e-05 Score=54.82 Aligned_cols=48 Identities=27% Similarity=0.669 Sum_probs=40.4
Q ss_pred CCCeeEcCCCCcCCCCCC-----CCCCCCCCC-CeEEc--CCCeEEeCCCcccCCCC
Q psy17083 9 IRASVQCRPGWRGEFCDQ-----CKPYPGCKH-GYCNG--SSWQCICDTNWGGILCD 57 (60)
Q Consensus 9 ~~~~C~C~~g~~g~~C~~-----c~~~~~C~~-g~C~~--~~~~C~C~~g~~G~~C~ 57 (60)
+.+.|.|+.||+|.+|+. |.-++ |.+ |.|++ +++.|.|.+++.|..|.
T Consensus 3922 n~f~CnC~~gyTG~~Ce~~Gi~eCs~n~-C~~gg~C~n~~gsf~CncT~g~~gr~c~ 3977 (4289)
T KOG1219|consen 3922 NGFLCNCPNGYTGKRCEARGISECSKNV-CGTGGQCINIPGSFHCNCTPGILGRTCC 3977 (4289)
T ss_pred CCeeEeCCCCccCceeeccccccccccc-ccCCceeeccCCceEeccChhHhcccCc
Confidence 457899999999999973 66667 874 68987 77899999999999874
No 14
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=97.41 E-value=0.00043 Score=28.88 Aligned_cols=25 Identities=32% Similarity=0.969 Sum_probs=20.2
Q ss_pred CC-CCeEEc--CCCeEEeCCCcc-cCCCC
Q psy17083 33 CK-HGYCNG--SSWQCICDTNWG-GILCD 57 (60)
Q Consensus 33 C~-~g~C~~--~~~~C~C~~g~~-G~~C~ 57 (60)
|. +++|++ +.+.|.|+.+|. |..|+
T Consensus 11 C~~~~~C~~~~g~~~C~C~~g~~~g~~C~ 39 (39)
T smart00179 11 CQNGGTCVNTVGSYRCECPPGYTDGRNCE 39 (39)
T ss_pred cCCCCEeECCCCCeEeECCCCCccCCcCC
Confidence 76 458886 678999999999 88874
No 15
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=97.13 E-value=0.0013 Score=26.92 Aligned_cols=25 Identities=32% Similarity=0.980 Sum_probs=19.7
Q ss_pred CC-CCeEEc--CCCeEEeCCCcccCCCC
Q psy17083 33 CK-HGYCNG--SSWQCICDTNWGGILCD 57 (60)
Q Consensus 33 C~-~g~C~~--~~~~C~C~~g~~G~~C~ 57 (60)
|. ++.|.+ +.+.|.|+.+|.|..|+
T Consensus 11 C~~~~~C~~~~~~~~C~C~~g~~g~~C~ 38 (38)
T cd00054 11 CQNGGTCVNTVGSYRCSCPPGYTGRNCE 38 (38)
T ss_pred cCCCCEeECCCCCeEeECCCCCcCCcCC
Confidence 66 457875 66889999999998774
No 16
>smart00181 EGF Epidermal growth factor-like domain.
Probab=97.12 E-value=0.0014 Score=26.84 Aligned_cols=25 Identities=32% Similarity=0.983 Sum_probs=18.6
Q ss_pred CCCCeEEc--CCCeEEeCCCccc-CCCC
Q psy17083 33 CKHGYCNG--SSWQCICDTNWGG-ILCD 57 (60)
Q Consensus 33 C~~g~C~~--~~~~C~C~~g~~G-~~C~ 57 (60)
|.++.|++ +.+.|.|+.||.| ..|+
T Consensus 8 C~~~~C~~~~~~~~C~C~~g~~g~~~C~ 35 (35)
T smart00181 8 CSNGTCINTPGSYTCSCPPGYTGDKRCE 35 (35)
T ss_pred CCCCEEECCCCCeEeECCCCCccCCccC
Confidence 66447765 6788999999998 7663
No 17
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=97.04 E-value=0.00024 Score=33.67 Aligned_cols=47 Identities=32% Similarity=0.702 Sum_probs=22.6
Q ss_pred CCCeeEcCCCCcCCCCCC-CCCCCCCC-CCeEEcCCCeEEeCCCcccCCC
Q psy17083 9 IRASVQCRPGWRGEFCDQ-CKPYPGCK-HGYCNGSSWQCICDTNWGGILC 56 (60)
Q Consensus 9 ~~~~C~C~~g~~g~~C~~-c~~~~~C~-~g~C~~~~~~C~C~~g~~G~~C 56 (60)
....-.|.+.|.|+.|+. |.+...-. +-+|. ..+.-+|.+||.|+.|
T Consensus 15 ~~~rv~C~~nyyG~~C~~~C~~~~d~~ghy~Cd-~~G~~~C~~Gw~G~~C 63 (63)
T PF01414_consen 15 YRIRVVCDENYYGPNCSKFCKPRDDSFGHYTCD-SNGNKVCLPGWTGPNC 63 (63)
T ss_dssp --------TTEETTTT-EE---EEETTEEEEE--SS--EEE-TTEESTTS
T ss_pred EEEEEECCCCCCCccccCCcCCCcCCcCCcccC-CCCCCCCCCCCcCCCC
Confidence 345678999999999974 55432111 23677 4678889999999987
No 18
>KOG4260|consensus
Probab=97.02 E-value=0.00083 Score=40.22 Aligned_cols=43 Identities=42% Similarity=0.913 Sum_probs=34.6
Q ss_pred EcCCCCcCCCCCCCCC---CCCCC-CCeEEc-----CCCeEEeCCCcccCCCC
Q psy17083 14 QCRPGWRGEFCDQCKP---YPGCK-HGYCNG-----SSWQCICDTNWGGILCD 57 (60)
Q Consensus 14 ~C~~g~~g~~C~~c~~---~~~C~-~g~C~~-----~~~~C~C~~g~~G~~C~ 57 (60)
-|++|-+|+.|..|.- .| |. +|.|.. +++.|.|.+||.|++|.
T Consensus 131 CCp~gtyGpdCl~Cpggser~-C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~ 182 (350)
T KOG4260|consen 131 CCPDGTYGPDCLQCPGGSERP-CFGNGSCHGDGSREGSGKCKCETGYTGPLCR 182 (350)
T ss_pred ccCCCCcCCccccCCCCCcCC-cCCCCcccCCCCCCCCCcccccCCCCCcccc
Confidence 4789999999988733 34 76 677764 67899999999999985
No 19
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=96.82 E-value=0.0033 Score=25.24 Aligned_cols=24 Identities=33% Similarity=1.025 Sum_probs=18.8
Q ss_pred CC-CCeEEc--CCCeEEeCCCcccC-CC
Q psy17083 33 CK-HGYCNG--SSWQCICDTNWGGI-LC 56 (60)
Q Consensus 33 C~-~g~C~~--~~~~C~C~~g~~G~-~C 56 (60)
|. ++.|++ +.+.|.|+.||.|. .|
T Consensus 8 C~~~~~C~~~~~~~~C~C~~g~~g~~~C 35 (36)
T cd00053 8 CSNGGTCVNTPGSYRCVCPPGYTGDRSC 35 (36)
T ss_pred CCCCCEEecCCCCeEeECCCCCcccCCc
Confidence 65 467876 56899999999988 65
No 20
>KOG0994|consensus
Probab=96.67 E-value=0.0024 Score=44.48 Aligned_cols=50 Identities=38% Similarity=1.028 Sum_probs=35.5
Q ss_pred CCCeeEcCCCCcCCCCCCCCC----CC--CCC------CC----eEEcCCCeEEeCCCcccCCCCc
Q psy17083 9 IRASVQCRPGWRGEFCDQCKP----YP--GCK------HG----YCNGSSWQCICDTNWGGILCDQ 58 (60)
Q Consensus 9 ~~~~C~C~~g~~g~~C~~c~~----~~--~C~------~g----~C~~~~~~C~C~~g~~G~~C~~ 58 (60)
.++.|+|.|||.|..|++|.. .| .|. .| .|....+.|.|.+|..|..|++
T Consensus 1082 ftGQCqCkpGfGGR~C~qCqel~WGdP~~~C~aCdCd~rG~~tpQCdr~tG~C~C~~Gv~G~rCdq 1147 (1758)
T KOG0994|consen 1082 FTGQCQCKPGFGGRTCSQCQELYWGDPNEKCRACDCDPRGIETPQCDRATGRCVCRPGVGGPRCDQ 1147 (1758)
T ss_pred cccceeccCCCCCcchhHHHHhhcCCCCCCceecCCCCCCCCCCCccccCCceeecCCCCCcchhh
Confidence 357999999999999986532 11 121 12 4555678999999999998864
No 21
>KOG1214|consensus
Probab=96.55 E-value=0.0042 Score=42.14 Aligned_cols=45 Identities=33% Similarity=0.869 Sum_probs=33.5
Q ss_pred CCCeeEcCCCCcCC--CC---CCCCCCCCCC-CCeEEc--CCCeEEeCCCcccC
Q psy17083 9 IRASVQCRPGWRGE--FC---DQCKPYPGCK-HGYCNG--SSWQCICDTNWGGI 54 (60)
Q Consensus 9 ~~~~C~C~~g~~g~--~C---~~c~~~~~C~-~g~C~~--~~~~C~C~~g~~G~ 54 (60)
..|.|.|-|||.|. .| ++|.+.. |- +..|.+ +++.|+|.+||.|.
T Consensus 807 s~y~C~CLPGfsGDG~~c~dvDeC~psr-Chp~A~CyntpgsfsC~C~pGy~GD 859 (1289)
T KOG1214|consen 807 STYSCACLPGFSGDGHQCTDVDECSPSR-CHPAATCYNTPGSFSCRCQPGYYGD 859 (1289)
T ss_pred ceEEEeecCCccCCccccccccccCccc-cCCCceEecCCCcceeecccCccCC
Confidence 35799999999875 33 3565444 65 567876 78999999999874
No 22
>PHA02887 EGF-like protein; Provisional
Probab=96.51 E-value=0.0034 Score=33.18 Aligned_cols=26 Identities=38% Similarity=0.997 Sum_probs=22.1
Q ss_pred CCCCeEEc----CCCeEEeCCCcccCCCCc
Q psy17083 33 CKHGYCNG----SSWQCICDTNWGGILCDQ 58 (60)
Q Consensus 33 C~~g~C~~----~~~~C~C~~g~~G~~C~~ 58 (60)
|.||+|.- ....|+|+.||+|..|+.
T Consensus 94 CiHG~C~yI~dL~epsCrC~~GYtG~RCE~ 123 (126)
T PHA02887 94 CINGECMNIIDLDEKFCICNKGYTGIRCDE 123 (126)
T ss_pred eeCCEEEccccCCCceeECCCCcccCCCCc
Confidence 77888864 567999999999999975
No 23
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=96.31 E-value=0.0059 Score=26.98 Aligned_cols=21 Identities=33% Similarity=0.920 Sum_probs=17.8
Q ss_pred CCCeeEcCCCCcCCCCCCCCC
Q psy17083 9 IRASVQCRPGWRGEFCDQCKP 29 (60)
Q Consensus 9 ~~~~C~C~~g~~g~~C~~c~~ 29 (60)
..+.|.|+++|+|.+|+.|..
T Consensus 16 ~~G~C~C~~~~~G~~C~~C~~ 36 (46)
T smart00180 16 DTGQCECKPNVTGRRCDRCAP 36 (46)
T ss_pred CCCEEECCCCCCCCCCCcCCC
Confidence 468999999999999987654
No 24
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=96.30 E-value=0.006 Score=27.31 Aligned_cols=21 Identities=33% Similarity=0.895 Sum_probs=18.1
Q ss_pred CCCeeEcCCCCcCCCCCCCCC
Q psy17083 9 IRASVQCRPGWRGEFCDQCKP 29 (60)
Q Consensus 9 ~~~~C~C~~g~~g~~C~~c~~ 29 (60)
..++|.|.++|.|..|++|..
T Consensus 17 ~~G~C~C~~~~~G~~C~~C~~ 37 (50)
T cd00055 17 GTGQCECKPNTTGRRCDRCAP 37 (50)
T ss_pred CCCEEeCCCcCCCCCCCCCCC
Confidence 468999999999999987754
No 25
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=96.14 E-value=0.002 Score=28.71 Aligned_cols=22 Identities=45% Similarity=0.986 Sum_probs=17.1
Q ss_pred cCCCeeEcCCCCcCCCCCCCCC
Q psy17083 8 NIRASVQCRPGWRGEFCDQCKP 29 (60)
Q Consensus 8 ~~~~~C~C~~g~~g~~C~~c~~ 29 (60)
...+.|.|.++|.|++|++|..
T Consensus 15 ~~~G~C~C~~~~~G~~C~~C~~ 36 (49)
T PF00053_consen 15 PSTGQCVCKPGTTGPRCDQCKP 36 (49)
T ss_dssp ETCEEESBSTTEESTTS-EE-T
T ss_pred CCCCEEeccccccCCcCcCCCC
Confidence 3578999999999999988654
No 26
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=96.12 E-value=0.0057 Score=32.83 Aligned_cols=26 Identities=35% Similarity=0.908 Sum_probs=22.0
Q ss_pred CCCCeEEc----CCCeEEeCCCcccCCCCc
Q psy17083 33 CKHGYCNG----SSWQCICDTNWGGILCDQ 58 (60)
Q Consensus 33 C~~g~C~~----~~~~C~C~~g~~G~~C~~ 58 (60)
|.||.|.- ....|+|..||+|..|+.
T Consensus 53 ClHG~C~yI~dl~~~~CrC~~GYtGeRCEh 82 (139)
T PHA03099 53 CLHGDCIHARDIDGMYCRCSHGYTGIRCQH 82 (139)
T ss_pred eECCEEEeeccCCCceeECCCCcccccccc
Confidence 77888863 668899999999999974
No 27
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=95.84 E-value=0.014 Score=25.10 Aligned_cols=20 Identities=30% Similarity=0.961 Sum_probs=17.4
Q ss_pred CC-CCeEEc--CCCeEEeCCCcc
Q psy17083 33 CK-HGYCNG--SSWQCICDTNWG 52 (60)
Q Consensus 33 C~-~g~C~~--~~~~C~C~~g~~ 52 (60)
|. ++.|++ ++|.|.|++||.
T Consensus 12 C~~~~~C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 12 CPENGTCVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp SSTTSEEEEETTEEEEEESTTEE
T ss_pred CCCCCEEEcCCCCEEeeCCCCcE
Confidence 66 578987 889999999997
No 28
>KOG1217|consensus
Probab=94.64 E-value=0.095 Score=31.93 Aligned_cols=47 Identities=32% Similarity=0.921 Sum_probs=35.8
Q ss_pred CCeeEcCCCCcCCCC------CCCCCCCCCC-CCeEEc--CCCeEEeCCCcccCCC
Q psy17083 10 RASVQCRPGWRGEFC------DQCKPYPGCK-HGYCNG--SSWQCICDTNWGGILC 56 (60)
Q Consensus 10 ~~~C~C~~g~~g~~C------~~c~~~~~C~-~g~C~~--~~~~C~C~~g~~G~~C 56 (60)
.+.|.|++||.+..+ ++|.....|. +++|+. ..+.|.|+++|.|..+
T Consensus 251 ~~~C~~~~g~~~~~~~~~~~~~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~~g~~~ 306 (487)
T KOG1217|consen 251 SYTCRCPEGYTGDACVTCVDVDSCALIASCPNGGTCVNVPGSYRCTCPPGFTGRLC 306 (487)
T ss_pred ceeeeCCCCccccccceeeeccccCCCCccCCCCeeecCCCcceeeCCCCCCCCCC
Confidence 368999999999873 3466553366 478986 3489999999999887
No 29
>KOG0994|consensus
Probab=94.26 E-value=0.066 Score=37.85 Aligned_cols=51 Identities=35% Similarity=0.811 Sum_probs=37.4
Q ss_pred cCCCeeEcCCCCcCCCCCCCCCCC-------C---CC-C----CeEEcCCCeEEeCCCcccCCCCc
Q psy17083 8 NIRASVQCRPGWRGEFCDQCKPYP-------G---CK-H----GYCNGSSWQCICDTNWGGILCDQ 58 (60)
Q Consensus 8 ~~~~~C~C~~g~~g~~C~~c~~~~-------~---C~-~----g~C~~~~~~C~C~~g~~G~~C~~ 58 (60)
..++.|.|-|...|..|+.|+.+. . |. + .+|..-.++|.|.+||.|..|++
T Consensus 1034 r~tGQCpClpNv~G~~CDqCA~N~w~laSG~GCe~C~Cd~~~~pqCN~ftGQCqCkpGfGGR~C~q 1099 (1758)
T KOG0994|consen 1034 RFTGQCPCLPNVQGVRCDQCAENHWNLASGEGCEPCNCDPIGGPQCNEFTGQCQCKPGFGGRTCSQ 1099 (1758)
T ss_pred cccCcCCCCcccccccccccccchhccccCCCCCccCCCccCCccccccccceeccCCCCCcchhH
Confidence 567889999999999999876542 1 21 1 24554557999999999998864
No 30
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=94.16 E-value=0.048 Score=22.95 Aligned_cols=20 Identities=25% Similarity=0.806 Sum_probs=14.6
Q ss_pred CCeEEc--CCCeEEeCCCcccC
Q psy17083 35 HGYCNG--SSWQCICDTNWGGI 54 (60)
Q Consensus 35 ~g~C~~--~~~~C~C~~g~~G~ 54 (60)
+.+|++ +.+.|.|.+||.|.
T Consensus 11 nA~C~~~~~~~~C~C~~Gy~Gd 32 (36)
T PF12947_consen 11 NATCTNTGGSYTCTCKPGYEGD 32 (36)
T ss_dssp TCEEEE-TTSEEEEE-CEEECC
T ss_pred CcEeecCCCCEEeECCCCCccC
Confidence 456765 67899999999875
No 31
>KOG1217|consensus
Probab=94.15 E-value=0.13 Score=31.35 Aligned_cols=50 Identities=30% Similarity=0.840 Sum_probs=37.0
Q ss_pred CCCeeEcCCCCcCCCCCC----CCCCC-CCCC-CeEEc--CCCeEEeCCCcccCCCCc
Q psy17083 9 IRASVQCRPGWRGEFCDQ----CKPYP-GCKH-GYCNG--SSWQCICDTNWGGILCDQ 58 (60)
Q Consensus 9 ~~~~C~C~~g~~g~~C~~----c~~~~-~C~~-g~C~~--~~~~C~C~~g~~G~~C~~ 58 (60)
..+.|.|..+|.+..++. |.... .|.+ +.|.. ..+.|.|+.+|.+..++.
T Consensus 150 ~~~~c~C~~g~~~~~~~~~~~~C~~~~~~c~~~~~C~~~~~~~~C~c~~~~~~~~~~~ 207 (487)
T KOG1217|consen 150 GPFRCSCTEGYEGEPCETDLDECIQYSSPCQNGGTCVNTGGSYLCSCPPGYTGSTCET 207 (487)
T ss_pred CceeeeeCCCcccccccccccccccCCCCcCCCcccccCCCCeeEeCCCCccCCcCcC
Confidence 357899999999998863 44222 2664 57876 557899999999988764
No 32
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=92.84 E-value=0.075 Score=20.50 Aligned_cols=10 Identities=30% Similarity=0.996 Sum_probs=5.8
Q ss_pred CeeEcCCCCc
Q psy17083 11 ASVQCRPGWR 20 (60)
Q Consensus 11 ~~C~C~~g~~ 20 (60)
|.|.|++||.
T Consensus 2 y~C~C~~Gy~ 11 (24)
T PF12662_consen 2 YTCSCPPGYQ 11 (24)
T ss_pred EEeeCCCCCc
Confidence 4566666664
No 33
>PHA02887 EGF-like protein; Provisional
Probab=92.69 E-value=0.11 Score=27.59 Aligned_cols=18 Identities=28% Similarity=0.589 Sum_probs=15.2
Q ss_pred CCCeeEcCCCCcCCCCCC
Q psy17083 9 IRASVQCRPGWRGEFCDQ 26 (60)
Q Consensus 9 ~~~~C~C~~g~~g~~C~~ 26 (60)
....|.|+.||+|.+|+.
T Consensus 106 ~epsCrC~~GYtG~RCE~ 123 (126)
T PHA02887 106 DEKFCICNKGYTGIRCDE 123 (126)
T ss_pred CCceeECCCCcccCCCCc
Confidence 346899999999999974
No 34
>KOG4260|consensus
Probab=90.89 E-value=0.19 Score=30.49 Aligned_cols=19 Identities=21% Similarity=0.674 Sum_probs=16.6
Q ss_pred cCCCeeEcCCCCcCCCCCC
Q psy17083 8 NIRASVQCRPGWRGEFCDQ 26 (60)
Q Consensus 8 ~~~~~C~C~~g~~g~~C~~ 26 (60)
..+++|.|.+||+|+.|..
T Consensus 165 ~GsGkCkC~~GY~Gp~C~~ 183 (350)
T KOG4260|consen 165 EGSGKCKCETGYTGPLCRY 183 (350)
T ss_pred CCCCcccccCCCCCccccc
Confidence 5678999999999999864
No 35
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=90.34 E-value=0.23 Score=26.77 Aligned_cols=18 Identities=22% Similarity=0.540 Sum_probs=15.6
Q ss_pred CCCeeEcCCCCcCCCCCC
Q psy17083 9 IRASVQCRPGWRGEFCDQ 26 (60)
Q Consensus 9 ~~~~C~C~~g~~g~~C~~ 26 (60)
....|.|+.||+|.+|+.
T Consensus 65 ~~~~CrC~~GYtGeRCEh 82 (139)
T PHA03099 65 DGMYCRCSHGYTGIRCQH 82 (139)
T ss_pred CCceeECCCCcccccccc
Confidence 456899999999999985
No 36
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=87.34 E-value=0.55 Score=19.69 Aligned_cols=17 Identities=24% Similarity=0.722 Sum_probs=11.8
Q ss_pred eEEc--CCCeEEeCCCccc
Q psy17083 37 YCNG--SSWQCICDTNWGG 53 (60)
Q Consensus 37 ~C~~--~~~~C~C~~g~~G 53 (60)
.|++ +.++|.|++||.-
T Consensus 11 ~C~~~~g~~~C~C~~Gy~L 29 (36)
T PF14670_consen 11 ICVNTPGSYRCSCPPGYKL 29 (36)
T ss_dssp EEEEETTSEEEE-STTEEE
T ss_pred CCccCCCceEeECCCCCEE
Confidence 4554 6789999999863
No 37
>KOG1836|consensus
Probab=86.85 E-value=0.65 Score=34.10 Aligned_cols=48 Identities=38% Similarity=0.914 Sum_probs=32.4
Q ss_pred CeeEcCCCCcCCCCCCCCCC---------C-----CCC-CC---eEEcCCCeEEeCCCcccCCCCc
Q psy17083 11 ASVQCRPGWRGEFCDQCKPY---------P-----GCK-HG---YCNGSSWQCICDTNWGGILCDQ 58 (60)
Q Consensus 11 ~~C~C~~g~~g~~C~~c~~~---------~-----~C~-~g---~C~~~~~~C~C~~g~~G~~C~~ 58 (60)
..|.|+.+|+|..|+.|.+. + .|. +| +|...+++|.|...-.|..|++
T Consensus 695 e~c~C~~g~tG~~Ce~C~~gfrr~~~~~~~~~~c~~C~cngh~~~Cd~~tG~C~C~~~t~G~~C~~ 760 (1705)
T KOG1836|consen 695 EQCTCPVGYTGQFCESCAPGFRRLSPQLGPFCPCIPCDCNGHSNICDPRTGQCKCKHNTFGGQCAQ 760 (1705)
T ss_pred hhccCCCCcccchhhhcchhhhcccccCCCCCcccccccCCccccccCCCCceecccCCCCCchhh
Confidence 35999999999999876442 1 132 23 4555667888877777776653
No 38
>KOG3607|consensus
Probab=85.32 E-value=0.81 Score=30.90 Aligned_cols=24 Identities=38% Similarity=0.798 Sum_probs=18.2
Q ss_pred CCCCc-cCCCeeEcCCCCcCCCCCC
Q psy17083 3 NRLGR-NIRASVQCRPGWRGEFCDQ 26 (60)
Q Consensus 3 ~~~g~-~~~~~C~C~~g~~g~~C~~ 26 (60)
+.||. +..++|.|.+||.++.|+.
T Consensus 633 ~g~GVCnn~~~ChC~~gwapp~C~~ 657 (716)
T KOG3607|consen 633 NGHGVCNNELNCHCEPGWAPPFCFI 657 (716)
T ss_pred CCCcccCCCcceeeCCCCCCCcccc
Confidence 45776 4567899999999988864
No 39
>KOG3516|consensus
Probab=85.25 E-value=0.89 Score=32.40 Aligned_cols=33 Identities=36% Similarity=1.122 Sum_probs=26.0
Q ss_pred CCCCCCCCCC-CeEEc--CCCeEEeC-CCcccCCCCcC
Q psy17083 26 QCKPYPGCKH-GYCNG--SSWQCICD-TNWGGILCDQG 59 (60)
Q Consensus 26 ~c~~~~~C~~-g~C~~--~~~~C~C~-~g~~G~~C~~~ 59 (60)
.|.+++ |.| |.|.. ..+.|.|. .||.|..|...
T Consensus 547 rClPN~-CehgG~C~Qs~~~f~C~C~~TGY~GatCHts 583 (1306)
T KOG3516|consen 547 RCLPNP-CEHGGKCSQSWDDFECNCELTGYKGATCHTS 583 (1306)
T ss_pred ccCCcc-ccCCCcccccccceeEeccccccccccccCC
Confidence 477777 986 57875 55789997 79999999764
No 40
>KOG1836|consensus
Probab=84.51 E-value=2.8 Score=31.10 Aligned_cols=51 Identities=41% Similarity=0.918 Sum_probs=36.8
Q ss_pred cCCCeeEcCCCCcCCCCCCCCCCC------C-----CC-CC----eEEcCCCeEEeCCCcccCCCCc
Q psy17083 8 NIRASVQCRPGWRGEFCDQCKPYP------G-----CK-HG----YCNGSSWQCICDTNWGGILCDQ 58 (60)
Q Consensus 8 ~~~~~C~C~~g~~g~~C~~c~~~~------~-----C~-~g----~C~~~~~~C~C~~g~~G~~C~~ 58 (60)
..++.|.|.++.+|.+|++|...- . |. .| .|.+..++|.|.+++.|..|++
T Consensus 956 ~~tGqc~c~~gVtgqrc~qc~~~~~~~~~~gc~~c~c~~~Gs~~~qc~~~~G~c~c~~~~~g~~c~~ 1022 (1705)
T KOG1836|consen 956 VGTGQCYCRPGVTGQRCDQCETYHFGFQTEGCGLCECDPLGSRGFQCDPEDGQCPCRPGFEGRRCDQ 1022 (1705)
T ss_pred ccCCceeeecCccccccCccccCcccccccCCcceecccCCcccceecccCCeeeecCCCCCccccc
Confidence 467899999999999998764421 1 11 23 4664578999999999877653
No 41
>KOG1218|consensus
Probab=84.26 E-value=4.3 Score=23.90 Aligned_cols=44 Identities=32% Similarity=0.798 Sum_probs=25.8
Q ss_pred cCCCeeEcCCCCcCCCCCCC----CCCCCCCCC-eEEcCCCeEEeCCCc
Q psy17083 8 NIRASVQCRPGWRGEFCDQC----KPYPGCKHG-YCNGSSWQCICDTNW 51 (60)
Q Consensus 8 ~~~~~C~C~~g~~g~~C~~c----~~~~~C~~g-~C~~~~~~C~C~~g~ 51 (60)
...+.|.|.+||.|.++..- .....+.++ .|......+.+.+.+
T Consensus 159 ~~~~~c~c~~g~~g~~~~~~~~~c~~~~~~~~g~~C~~~~~~~~~~~~~ 207 (316)
T KOG1218|consen 159 CKNGICTCQPGFVGVFCVESCSGCSPLTACENGAKCNRSTGSCLCYPGP 207 (316)
T ss_pred CCCCceeccCCcccccccccCCCcCCCcccCCCCeeeccccccccCCCC
Confidence 45678889999999888542 222234444 676544444444433
No 42
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=84.06 E-value=1.1 Score=23.24 Aligned_cols=26 Identities=38% Similarity=1.212 Sum_probs=17.0
Q ss_pred CC-CCeEEc-------CCCeEEeCC-------------CcccCCCCc
Q psy17083 33 CK-HGYCNG-------SSWQCICDT-------------NWGGILCDQ 58 (60)
Q Consensus 33 C~-~g~C~~-------~~~~C~C~~-------------g~~G~~C~~ 58 (60)
|. ||.|+. .-|.|.|.+ .|.|..|++
T Consensus 15 CsgHG~C~~~~~~~~~~C~~C~C~~T~~~~~~~~~ktt~W~G~aCqK 61 (103)
T PF12955_consen 15 CSGHGSCVKKYGSGGGDCFACKCKPTVVKTGSGKGKTTHWGGPACQK 61 (103)
T ss_pred CCCCceEeeccCCCccceEEEEeeccccccccccCceeeeccccccc
Confidence 55 677764 125677765 578888864
No 43
>KOG3607|consensus
Probab=80.91 E-value=1.4 Score=29.87 Aligned_cols=25 Identities=36% Similarity=1.089 Sum_probs=21.0
Q ss_pred CC-CCeEEcCCCeEEeCCCcccCCCCc
Q psy17083 33 CK-HGYCNGSSWQCICDTNWGGILCDQ 58 (60)
Q Consensus 33 C~-~g~C~~~~~~C~C~~g~~G~~C~~ 58 (60)
|. +|.|. ....|.|.++|.++.|+.
T Consensus 632 C~g~GVCn-n~~~ChC~~gwapp~C~~ 657 (716)
T KOG3607|consen 632 CNGHGVCN-NELNCHCEPGWAPPFCFI 657 (716)
T ss_pred cCCCcccC-CCcceeeCCCCCCCcccc
Confidence 55 67887 578999999999999975
No 44
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=79.39 E-value=3.5 Score=20.97 Aligned_cols=28 Identities=32% Similarity=0.724 Sum_probs=18.6
Q ss_pred CCCCCCCC-CCeEEc-CCCeEEeCCCcccC
Q psy17083 27 CKPYPGCK-HGYCNG-SSWQCICDTNWGGI 54 (60)
Q Consensus 27 c~~~~~C~-~g~C~~-~~~~C~C~~g~~G~ 54 (60)
|.....|. .|.|.. ....|.|.+||.-+
T Consensus 80 Cd~y~~CG~~g~C~~~~~~~C~Cl~GF~P~ 109 (110)
T PF00954_consen 80 CDVYGFCGPNGICNSNNSPKCSCLPGFEPK 109 (110)
T ss_pred CCCccccCCccEeCCCCCCceECCCCcCCC
Confidence 44333465 588875 44579999999643
No 45
>KOG3516|consensus
Probab=78.30 E-value=2.7 Score=30.23 Aligned_cols=33 Identities=33% Similarity=0.994 Sum_probs=25.6
Q ss_pred CCCCCCCCC-CeEEc--CCCeEEeC-CCcccCCCCcCC
Q psy17083 27 CKPYPGCKH-GYCNG--SSWQCICD-TNWGGILCDQGH 60 (60)
Q Consensus 27 c~~~~~C~~-g~C~~--~~~~C~C~-~g~~G~~C~~~~ 60 (60)
|.+.+ |.| |.|+. ..+.|-|. ..|.|+.|..+|
T Consensus 958 Css~~-C~NGG~Cvery~gytCDCs~Tay~Gp~Cs~ei 994 (1306)
T KOG3516|consen 958 CSSYP-CLNGGHCVERYDGYTCDCSRTAYDGPFCSKEI 994 (1306)
T ss_pred ccccc-ccCCCEEEEecCceeeccccCcCCCCcccccc
Confidence 66666 985 79987 66899984 479999998764
No 46
>PF10530 Toxin_35: Toxin with inhibitor cystine knot ICK or Knottin scaffold; InterPro: IPR019553 Spider toxins of the CSTX family are ion channel toxins containing an inhibitor cystine knot (ICK) structural motif or Knottin scaffold. The four disulphide bonds present in the CSTX spider toxin family are arranged in the following pattern: 1-4, 2-5, 3-8 and 6-7. CSTX-1 is the most important component of Cupiennius salei (Wandering spider) venom in terms of relative abundance and toxicity and therefore is likely to contribute significantly to the overall toxicity of the whole venom. CSTX-1 blocked rat neuronal L-type, but no other types of HVA Cav channels []. Interestingly, the omega-toxins from Phoneutria nigriventer (Brazilian armed spider) venom (another South American species also belonging to the Ctenidae family) are included as they carry the same disulphide bond arrangement. suggested that CSTX-1 may interact with Cav channels. Calcium ion voltage channel heteromultimer containing an L-type pore-forming alpha1-subunit is the most probable candidate for the molecular target of CSTX-1 these toxins [].
Probab=75.15 E-value=1.6 Score=16.56 Aligned_cols=14 Identities=14% Similarity=0.425 Sum_probs=8.5
Q ss_pred CCCCCccCCCeeEc
Q psy17083 2 SNRLGRNIRASVQC 15 (60)
Q Consensus 2 ~~~~g~~~~~~C~C 15 (60)
...||++...+|+|
T Consensus 10 ~dk~gCC~~~~C~C 23 (23)
T PF10530_consen 10 HDKHGCCFKWKCNC 23 (23)
T ss_pred cCCCCceeeeEecC
Confidence 34566666666654
No 47
>KOG3512|consensus
Probab=75.13 E-value=6.3 Score=25.93 Aligned_cols=21 Identities=33% Similarity=0.847 Sum_probs=17.2
Q ss_pred eEEcCCCeEEeCCCcccCCCC
Q psy17083 37 YCNGSSWQCICDTNWGGILCD 57 (60)
Q Consensus 37 ~C~~~~~~C~C~~g~~G~~C~ 57 (60)
+|...+++|.|.+|-+|..|+
T Consensus 408 tCNq~tGqCpCkeGvtG~tCn 428 (592)
T KOG3512|consen 408 TCNQTTGQCPCKEGVTGLTCN 428 (592)
T ss_pred cccccCCcccCCCCCcccccc
Confidence 676567899999999998875
No 48
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=73.68 E-value=2.4 Score=17.69 Aligned_cols=11 Identities=18% Similarity=0.474 Sum_probs=6.8
Q ss_pred CCeeEcCCCCc
Q psy17083 10 RASVQCRPGWR 20 (60)
Q Consensus 10 ~~~C~C~~g~~ 20 (60)
.+.|.|+.||.
T Consensus 17 ~~~C~CPeGyI 27 (34)
T PF09064_consen 17 PGQCFCPEGYI 27 (34)
T ss_pred CCceeCCCceE
Confidence 34677777663
No 49
>KOG3514|consensus
Probab=73.57 E-value=2.7 Score=30.23 Aligned_cols=31 Identities=29% Similarity=0.993 Sum_probs=24.9
Q ss_pred CCCCCCCCC-CeEEc--CCCeEEeCC-CcccCCCCc
Q psy17083 27 CKPYPGCKH-GYCNG--SSWQCICDT-NWGGILCDQ 58 (60)
Q Consensus 27 c~~~~~C~~-g~C~~--~~~~C~C~~-g~~G~~C~~ 58 (60)
|..+| |+| |.|.. +.+.|-|.. +|.|+.|+.
T Consensus 626 C~~nP-C~N~g~C~egwNrfiCDCs~T~~~G~~Cer 660 (1591)
T KOG3514|consen 626 CESNP-CQNGGKCSEGWNRFICDCSGTGFEGRTCER 660 (1591)
T ss_pred cCCCc-ccCCCCccccccccccccccCcccCccccc
Confidence 77788 985 78987 667888855 899999975
No 50
>KOG3512|consensus
Probab=64.37 E-value=4.2 Score=26.69 Aligned_cols=21 Identities=29% Similarity=0.836 Sum_probs=18.2
Q ss_pred CCCeeEcCCCCcCCCCCCCCC
Q psy17083 9 IRASVQCRPGWRGEFCDQCKP 29 (60)
Q Consensus 9 ~~~~C~C~~g~~g~~C~~c~~ 29 (60)
.+++|.|.+|.+|..|..|..
T Consensus 412 ~tGqCpCkeGvtG~tCnrCa~ 432 (592)
T KOG3512|consen 412 TTGQCPCKEGVTGLTCNRCAP 432 (592)
T ss_pred cCCcccCCCCCcccccccccc
Confidence 578999999999999987654
No 51
>KOG0196|consensus
Probab=61.93 E-value=11 Score=26.55 Aligned_cols=46 Identities=20% Similarity=0.566 Sum_probs=27.5
Q ss_pred cCCCeeEcCCCCc----CCCCCCCCCCC--------CCC----CCeE-EcCCCeEEeCCCccc
Q psy17083 8 NIRASVQCRPGWR----GEFCDQCKPYP--------GCK----HGYC-NGSSWQCICDTNWGG 53 (60)
Q Consensus 8 ~~~~~C~C~~g~~----g~~C~~c~~~~--------~C~----~g~C-~~~~~~C~C~~g~~G 53 (60)
.-.+.|.|.+||. |..|+.|.... .|. |..- ..++..|.|..||.-
T Consensus 256 vpiG~C~C~aGye~~~~~~~C~aCp~G~yK~~~~~~~C~~CP~~S~s~~ega~~C~C~~gyyR 318 (996)
T KOG0196|consen 256 VPIGGCVCKAGYEEAENGKACQACPPGTYKASQGDSLCLPCPPNSHSSSEGATSCTCENGYYR 318 (996)
T ss_pred EEcCceeecCCCCcccCCCcceeCCCCcccCCCCCCCCCCCCCCCCCCCCCCCcccccCCccc
Confidence 3458999999994 56776654321 122 1111 115568999999853
No 52
>KOG1214|consensus
Probab=59.99 E-value=32 Score=24.65 Aligned_cols=43 Identities=23% Similarity=0.855 Sum_probs=28.6
Q ss_pred CCCeeEcCCCCcC--CCCC---CCCC-CCCCC-CCeEEc--CCCeEEeCCCc
Q psy17083 9 IRASVQCRPGWRG--EFCD---QCKP-YPGCK-HGYCNG--SSWQCICDTNW 51 (60)
Q Consensus 9 ~~~~C~C~~g~~g--~~C~---~c~~-~~~C~-~g~C~~--~~~~C~C~~g~ 51 (60)
+.++|.|..+|.| ..|. +|+. .+.|. +..|++ +.++|.|..+|
T Consensus 714 ~~~tcecs~g~~gdgr~c~d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy 765 (1289)
T KOG1214|consen 714 VDYTCECSSGYQGDGRNCVDENECATGFHRCGPNSVCINLPGSYRCECRSGY 765 (1289)
T ss_pred cceEEEEeeccCCCCCCCCChhhhccCCCCCCCCceeecCCCceeEEEeecc
Confidence 3458999999976 4563 2332 33465 567886 77888887766
No 53
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=58.63 E-value=7.7 Score=16.45 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=12.5
Q ss_pred CCeEEc---CCCeEEeCCCcc
Q psy17083 35 HGYCNG---SSWQCICDTNWG 52 (60)
Q Consensus 35 ~g~C~~---~~~~C~C~~g~~ 52 (60)
|..|.. +...|+|..||.
T Consensus 10 NA~C~~~~dG~eecrCllgyk 30 (37)
T PF12946_consen 10 NAGCFRYDDGSEECRCLLGYK 30 (37)
T ss_dssp TEEEEEETTSEEEEEE-TTEE
T ss_pred CcccEEcCCCCEEEEeeCCcc
Confidence 456764 567899999995
No 54
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=56.98 E-value=17 Score=15.82 Aligned_cols=29 Identities=24% Similarity=0.579 Sum_probs=17.3
Q ss_pred CcCCCCCCCCCCCCCC-CCeEEcCCCeEEeCCCcc
Q psy17083 19 WRGEFCDQCKPYPGCK-HGYCNGSSWQCICDTNWG 52 (60)
Q Consensus 19 ~~g~~C~~c~~~~~C~-~g~C~~~~~~C~C~~g~~ 52 (60)
..|..|+ ....|. +..|+. +.|.|++||.
T Consensus 17 ~~g~~C~---~~~qC~~~s~C~~--g~C~C~~g~~ 46 (52)
T PF01683_consen 17 QPGESCE---SDEQCIGGSVCVN--GRCQCPPGYV 46 (52)
T ss_pred CCCCCCC---CcCCCCCcCEEcC--CEeECCCCCE
Confidence 4455553 222355 346764 7899999874
No 55
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=49.33 E-value=9.5 Score=17.64 Aligned_cols=18 Identities=33% Similarity=0.759 Sum_probs=9.4
Q ss_pred CCCeEEeCCCcccCCCCc
Q psy17083 41 SSWQCICDTNWGGILCDQ 58 (60)
Q Consensus 41 ~~~~C~C~~g~~G~~C~~ 58 (60)
+...|.|..-|.|+.|++
T Consensus 34 G~p~CECn~Cy~GpdCS~ 51 (56)
T PF04863_consen 34 GSPVCECNSCYGGPDCST 51 (56)
T ss_dssp TEE--EE-TTEESTTS-E
T ss_pred CCccccccCCcCCCCccc
Confidence 334677777777777764
No 56
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=43.50 E-value=20 Score=20.33 Aligned_cols=17 Identities=24% Similarity=0.702 Sum_probs=14.0
Q ss_pred eEEc--CCCeEEeCCCccc
Q psy17083 37 YCNG--SSWQCICDTNWGG 53 (60)
Q Consensus 37 ~C~~--~~~~C~C~~g~~G 53 (60)
.|.+ +.|.|.|+.||..
T Consensus 200 ~C~~~~g~~~c~c~~g~~~ 218 (224)
T cd01475 200 VCISTPGSYLCACTEGYAL 218 (224)
T ss_pred eEEcCCCCEEeECCCCccC
Confidence 5765 7799999999975
No 57
>KOG3509|consensus
Probab=38.10 E-value=28 Score=24.82 Aligned_cols=19 Identities=32% Similarity=0.810 Sum_probs=15.8
Q ss_pred CeeEcCCCCcCCCCCCCCC
Q psy17083 11 ASVQCRPGWRGEFCDQCKP 29 (60)
Q Consensus 11 ~~C~C~~g~~g~~C~~c~~ 29 (60)
..|+|++++.|..|+.|..
T Consensus 718 ~~C~c~~g~~G~~ce~c~e 736 (964)
T KOG3509|consen 718 EQCQCPKGLVGTSCEDCAE 736 (964)
T ss_pred cccccCccccCcccccccc
Confidence 4799999999999987544
No 58
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=32.14 E-value=27 Score=20.22 Aligned_cols=20 Identities=30% Similarity=0.911 Sum_probs=15.3
Q ss_pred CCCCeEEc--CCCeEEeCCCcc
Q psy17083 33 CKHGYCNG--SSWQCICDTNWG 52 (60)
Q Consensus 33 C~~g~C~~--~~~~C~C~~g~~ 52 (60)
|++|..+. +.+.|.|.+||.
T Consensus 8 CKNG~LiQMSNHfEC~Cnegfv 29 (197)
T PF06247_consen 8 CKNGYLIQMSNHFECKCNEGFV 29 (197)
T ss_dssp -BTEEEEEESSEEEEEESTTEE
T ss_pred ccCCEEEEccCceEEEcCCCcE
Confidence 77887765 678999999984
Done!