RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17083
(60 letters)
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 47.4 bits (113), Expect = 8e-09
Identities = 27/45 (60%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
Query: 14 QCRPGWRGEFCDQCKPYPGCKHGYCNGSSWQCICDTNWGGILCDQ 58
+C+ GW+G +CD+C P+PGC HG CN WQC+C+TNWGG LCD+
Sbjct: 86 RCQYGWQGLYCDKCIPHPGCVHGICNE-PWQCLCETNWGGQLCDK 129
Score = 34.6 bits (80), Expect = 4e-04
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 12 SVQCRPGWRGEFCDQ-CKPYPGCKHGYCNGSSWQCICDTNWGGILCDQ 58
+V C + G C++ C+P Y + C W G C++
Sbjct: 18 AVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNR 65
Score = 28.5 bits (64), Expect = 0.071
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 14 QCRPGWRGEFCDQ--CKPYPGCKHGYCNGSSWQCICDTNWGGILCDQ 58
C GW G C++ C+ KHG C C C W G+ CD+
Sbjct: 53 TCMEGWMGPECNRAICRQGCSPKHGSCK-LPGDCRCQYGWQGLYCDK 98
Score = 24.6 bits (54), Expect = 1.6
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 27 CKPYPGCKHGYCNGSSWQCICDTNWGGILCDQ 58
+ HG G CD + G C++
Sbjct: 2 RGSHHHHHHGSIEGR-SAVTCDDYYYGFGCNK 32
Score = 23.5 bits (51), Expect = 4.3
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 8/52 (15%)
Query: 14 QCRPGWRGEFCDQ----CKPYPGCKHG----YCNGSSWQCICDTNWGGILCD 57
C W G+ CD+ C + C +G +QC C + G C+
Sbjct: 117 LCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 42.9 bits (101), Expect = 7e-07
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 14 QCRPGWRGEFCDQCKPYPGCKHGYCNGSSWQCICDTNWGGILCDQ 58
+C G+ G C++ P C +G + CIC + G+ CD+
Sbjct: 168 ECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVNCDK 212
Score = 30.2 bits (68), Expect = 0.022
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 14 QCRPGWRGEFCDQCKPYPGCK-HGYCNGSSWQCICDTNWGGILCDQ 58
+ + C Q + GC+ G+CN C C + G C++
Sbjct: 136 TPQNAIFFKTCQQAECPGGCRNGGFCN-ERRICECPDGFHGPHCEK 180
Score = 29.0 bits (65), Expect = 0.059
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 14 QCRPGWRGEFCDQCKPYPGCK-HGYCNGSSWQCICDTNWGGILCD 57
C PG+ G CD+ C G C +CIC G C+
Sbjct: 200 ICPPGFYGVNCDKANCSTTCFNGGTCF-YPGKCICPPGLEGEQCE 243
Score = 28.7 bits (64), Expect = 0.074
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 14 QCRPGWRGEFCDQCKPYPGCKHGYCNGSSWQCICDTNWGGILCDQ 58
C PG GE C+ K C++G +C C + G LC +
Sbjct: 232 ICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCKCSKGYQGDLCSK 276
Score = 27.9 bits (62), Expect = 0.12
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 14 QCRPGWRGEFCDQCKPYPGCK-HGYCNGSSWQCICDTNWGGILCDQ 58
+C G++G+ C + PGC HG C+ +C C W G C++
Sbjct: 264 KCSKGYQGDLCSKPVCEPGCGAHGTCH-EPNKCQCQEGWHGRHCNK 308
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 40.3 bits (94), Expect = 5e-06
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 8 NIRASVQCRPGWRGEFCDQCKPYPGCKHGYCNGSSWQCICDTNWGGILCDQG 59
C PGW G+FC K P C+HG +C+C + G C+Q
Sbjct: 405 TPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQV 456
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 32.4 bits (73), Expect = 0.004
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 18/63 (28%)
Query: 14 QCRPGWRGEFCDQCKP------------------YPGCKHGYCNGSSWQCICDTNWGGIL 55
C+ G+ CDQC P G + C+ S QC C + G
Sbjct: 463 YCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQ 522
Query: 56 CDQ 58
C++
Sbjct: 523 CNE 525
Score = 25.8 bits (56), Expect = 0.71
Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 21/66 (31%)
Query: 14 QCRPGWRGEFCDQCKP---------YPGCK------------HGYCNGSSWQCICDTNWG 52
+C+ GE CD CK GCK C+ + C C
Sbjct: 410 RCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVT 469
Query: 53 GILCDQ 58
G CDQ
Sbjct: 470 GQRCDQ 475
Score = 23.9 bits (51), Expect = 3.8
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 24 CDQCKPYPGCKHGYCNGSSWQCICDTNWGGILCDQ 58
+C P G C+C N G+ C+
Sbjct: 260 ASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCEL 294
Score = 22.7 bits (48), Expect = 9.5
Identities = 11/54 (20%), Positives = 15/54 (27%), Gaps = 1/54 (1%)
Query: 6 GRNIRASVQCRPGWRGEFCDQCKPYPGC-KHGYCNGSSWQCICDTNWGGILCDQ 58
R+IR C P + + QC C + G CD
Sbjct: 369 ERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDV 422
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 31.2 bits (70), Expect = 0.010
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 13 VQCRPGWRGEFCDQCKPYPGCKHGYCNGSSWQCICDTNWGGILCDQ 58
V+C+ RG D+ C+ S + + DT + C
Sbjct: 615 VECKKFDRGALHDENTCNRYCRD---EIESVKELKDTGKDAVNCTY 657
Score = 28.9 bits (64), Expect = 0.072
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 15 CRPGWRGEFCDQCKPYPGCKHGYCNGSSWQCICDTNWGGILCDQG 59
+PG G+ C++C P C C C G L D+
Sbjct: 589 IQPGSYGDTCEKC---PTCPDA-CTFKKECVECKKFDRGALHDEN 629
Score = 27.0 bits (59), Expect = 0.37
Identities = 11/54 (20%), Positives = 15/54 (27%), Gaps = 10/54 (18%)
Query: 14 QCRPGWRGEFCDQCKPYPGCK---------HGYCNGSSWQCICDTNWGGILCDQ 58
C W G +C+ C G C S C G C++
Sbjct: 548 LCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVC-IQPGSYGDTCEK 600
Score = 25.0 bits (54), Expect = 1.4
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 13/56 (23%)
Query: 14 QCRPGWRGEFCDQ--------CKPYPGCK---HGYCNGSSWQCICDTNWGGILCDQ 58
C G+ + C Y G HG C+ C+CD++W G C+
Sbjct: 507 VCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCG--DCLCDSDWTGYYCNC 560
Score = 24.3 bits (52), Expect = 3.2
Identities = 7/35 (20%), Positives = 9/35 (25%)
Query: 23 FCDQCKPYPGCKHGYCNGSSWQCICDTNWGGILCD 57
C +G C C W G C+
Sbjct: 438 QAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE 472
Score = 23.9 bits (51), Expect = 4.0
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 14/59 (23%)
Query: 14 QCRPGWRGEFCD--------------QCKPYPGCKHGYCNGSSWQCICDTNWGGILCDQ 58
+C PGW G C+ + QC+C ++ G + +
Sbjct: 461 RCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLCGQCVCHSSDFGKITGK 519
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 28.9 bits (64), Expect = 0.068
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 14 QCRPGWRGEFCDQCKPYPGCKHGYCNGSSWQCICDTNWGGILCDQ 58
+C G C+ +G C+ + +CIC + G C++
Sbjct: 188 RCEAQKWGPECNHLCT-ACMNNGVCHEDTGECICPPGFMGRTCEK 231
Score = 27.0 bits (59), Expect = 0.35
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 15/60 (25%)
Query: 14 QCRPGWRGEFCDQ--------------CKPYPGCKHGY-CNGSSWQCICDTNWGGILCDQ 58
C PG+ G C++ C GCK C + C C T W G+ C++
Sbjct: 219 ICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNE 278
Score = 26.6 bits (58), Expect = 0.40
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 14 QCRPGWRGEFCDQ----------CKPYPGCKHGYCNGSSWQCICDTNWGGILCDQ 58
C GW+G C++ CK C +G C+C W G+ C++
Sbjct: 266 SCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLCSPGWQGLQCER 320
Score = 25.8 bits (56), Expect = 0.75
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 14 QCRPGWRGEFCDQCKPYPGCKHGYCNGSSWQCICDTNWGGILCD 57
C PGW+G C++ ++ +C
Sbjct: 308 LCSPGWQGLQCEREGIPRMTPKIVDLPD--HIEVNSGKFNPICK 349
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 28.5 bits (63), Expect = 0.092
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 11/54 (20%)
Query: 14 QCRPGWRGEFCDQCKPYPGCK---------HGYCNGSSWQCICDTNWGGILCDQ 58
+C PG+ G C + GC G C + C C + + LC +
Sbjct: 541 RCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCN--VCECHSGYQLPLCQE 592
Score = 27.8 bits (61), Expect = 0.15
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 5/47 (10%)
Query: 14 QCRPGWRGEFCDQCKPYPG--CKHGYCNGSSWQCICDTNWGGILCDQ 58
+C G++ C +C P K+ C + G C
Sbjct: 580 ECHSGYQLPLCQECPGCPSPCGKYISCAEC---LKFEKGPFGKNCSA 623
Score = 26.6 bits (58), Expect = 0.47
Identities = 7/50 (14%), Positives = 10/50 (20%), Gaps = 4/50 (8%)
Query: 14 QCRPGWRGEFCDQCKPY----PGCKHGYCNGSSWQCICDTNWGGILCDQG 59
+ G G+ C P G C + D
Sbjct: 611 KFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQDGM 660
Score = 23.5 bits (50), Expect = 5.8
Identities = 6/35 (17%), Positives = 10/35 (28%)
Query: 24 CDQCKPYPGCKHGYCNGSSWQCICDTNWGGILCDQ 58
C++ G +C C + G C
Sbjct: 519 CERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQC 553
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 27.3 bits (61), Expect = 0.19
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 6/51 (11%)
Query: 14 QCRPGWRGEFCDQ---CKPYPGCKHGYC---NGSSWQCICDTNWGGILCDQ 58
C+ G+ G+ C+ C G +C S C C T + +
Sbjct: 72 WCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQK 122
Score = 23.1 bits (50), Expect = 6.6
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 24 CDQCKPYPGCKHGYC--NGSSWQCICDTNWGGILCDQ 58
DQC+P P G C + +S++C C + G C+
Sbjct: 48 GDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCEL 84
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 27.7 bits (60), Expect = 0.20
Identities = 11/48 (22%), Positives = 17/48 (35%)
Query: 11 ASVQCRPGWRGEFCDQCKPYPGCKHGYCNGSSWQCICDTNWGGILCDQ 58
A + W + G+ C+CD WGG+ CD+
Sbjct: 518 APFDKQQTWAIDNVYIGDGCLDMCSGHGRCVQGSCVCDEQWGGLYCDE 565
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 27.3 bits (60), Expect = 0.25
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 24 CDQCKPYPGCKHGYC--NGSSWQCICD-TNWGGILCDQ 58
C+ G C + C C T++ G LC+
Sbjct: 185 STTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCND 222
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 27.1 bits (59), Expect = 0.25
Identities = 7/40 (17%), Positives = 11/40 (27%), Gaps = 3/40 (7%)
Query: 14 QCRPGWRGEFCDQCKPYPGCKHGYCNGSSWQCICDTNWGG 53
C + G C++ + G C S Q
Sbjct: 386 LCPAAYTGILCEKLRCEEA---GSCGSDSGQGAPPHGTHH 422
Score = 24.4 bits (52), Expect = 2.5
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Query: 12 SVQCRPGWRGEFCDQCKPY-------PGCKHGYCNGSSWQCI-CDTNWGGILCD 57
+ +C G C +CK PG G++ CI ++ G +CD
Sbjct: 314 TCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCD 367
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 25.7 bits (56), Expect = 0.93
Identities = 5/13 (38%), Positives = 10/13 (76%)
Query: 14 QCRPGWRGEFCDQ 26
+C PGW+ +C++
Sbjct: 400 RCYPGWQAPWCER 412
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 25.6 bits (57), Expect = 0.97
Identities = 4/24 (16%), Positives = 6/24 (25%), Gaps = 7/24 (29%)
Query: 41 SSWQ----CICDTNWGGILCDQGH 60
W C + G+ C
Sbjct: 31 PDWSSNKNP-C--TFDGVTCRDDK 51
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase,
disease mutation, DNA replication, DNA-binding,
DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo
sapiens}
Length = 1172
Score = 25.6 bits (55), Expect = 1.1
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 1 MSNRLGRNIRASVQCRPGWR 20
+R+G ++A VQ PG+
Sbjct: 799 RPDRVGSELKAMVQAPPGYT 818
>2vh0_B Activated factor XA light chain; serine protease, EGF-like
domain, blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 24.9 bits (55), Expect = 1.3
Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 6/50 (12%)
Query: 15 CRPGWRGEFC----DQCKPYPGCKHGYCN--GSSWQCICDTNWGGILCDQ 58
DQC+ P G C + C C + G C+
Sbjct: 29 SDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 78
Score = 24.6 bits (54), Expect = 1.8
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 7/52 (13%)
Query: 14 QCRPGWRGEFC-----DQCKPYPGCKHGYC--NGSSWQCICDTNWGGILCDQ 58
C G+ G+ C C G +C +S C C + +
Sbjct: 66 TCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGK 117
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 24.9 bits (55), Expect = 1.5
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 14 QCRPGWRGEFC----DQCKPYPGCKHGYCN--GSSWQCICDTNWGGILCDQ 58
C PG+ G C D+C P +G C + +QC C T + G LC
Sbjct: 69 ICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQV 119
Score = 24.5 bits (54), Expect = 2.2
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 14 QCRPGWRGEFC----DQCKPYPGCKHGYC---NGSSWQCICDTNWGGILCDQ 58
QC G+ G C ++C P C++ +QCIC + G+ C+
Sbjct: 31 QCLQGYTGPRCEIDVNECVSNP-CQNDATCLDQIGEFQCICMPGYEGVHCEV 81
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 24.7 bits (54), Expect = 2.1
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 7/52 (13%)
Query: 14 QCRPGWRGEFC-----DQCKPYPGCKHGYCN--GSSWQCICDTNWGGILCDQ 58
C G+ G+ C C G +C+ +S C C + +
Sbjct: 66 TCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGK 117
Score = 23.2 bits (50), Expect = 7.1
Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 6/50 (12%)
Query: 15 CRPGWRGEFC----DQCKPYPGCKHGYC--NGSSWQCICDTNWGGILCDQ 58
DQC+ P G C + C C + G C+
Sbjct: 29 SDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 78
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 24.7 bits (54), Expect = 2.1
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 15 CRPGWRGEFC----DQCKPYP--GCKHGYCNGS-SWQCICDTNW 51
C PG+ G C ++C P GC+H G S+ C C +
Sbjct: 30 CSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGY 73
Score = 23.1 bits (50), Expect = 7.1
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 25 DQCKPYPGCKHGYC--NGSSWQCICDTNWGGILCDQ 58
C P +G C + + C C + G C+
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCEL 41
>2cmz_A Spike glycoprotein; membrane, lipoprotein, transmembrane,
envelope protein, membrane protein; HET: PE4; 2.40A
{Vesicular stomatitis indiana virus} SCOP: e.76.1.2
PDB: 2j6j_A*
Length = 423
Score = 24.4 bits (52), Expect = 2.6
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 37 YCNGSSWQCICDTNWGG 53
C+ S W CD W G
Sbjct: 58 MCHASKWVTTCDFRWYG 74
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 23.8 bits (52), Expect = 3.2
Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 12/56 (21%)
Query: 14 QCRPGWRGEFC----DQCKPYPGCKHGYCN-------GSSWQCICDTNWGGILCDQ 58
C P + G C D ++G C G+ C C + +
Sbjct: 71 FCLPAFEGRNCETHKDDQLICV-NENGGCEQYCSDHTGTKRSCRCHEGYSLLADGV 125
Score = 23.4 bits (51), Expect = 4.6
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 24 CDQCKPYPGCKHGYC--NGSSWQCICDTNWGGILCDQ 58
DQC P G C S+ C C + G C+
Sbjct: 47 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCET 83
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil,
glycoprotein, laminin EGF-like domain, extracellular
matrix, laminin G-like domain; HET: NAG; 2.80A {Mus
musculus}
Length = 608
Score = 23.9 bits (51), Expect = 4.2
Identities = 5/35 (14%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 27 CKPYPGCKHG-YCNGSSWQCICDTNWGGILCDQGH 60
K Y GC + + + + ++ G+
Sbjct: 350 VKKYSGCLKDIEISRTPYNILSSPDYVGVTKGCSL 384
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 23.3 bits (49), Expect = 5.6
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 15 CRPGWRGEFCDQCKPYPGCKHGYCNGSSWQCICDTNWGGILCDQ 58
+ + C Q + GC++G C C + G C+
Sbjct: 137 PQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFHGPHCEG 180
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET:
NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 23.3 bits (51), Expect = 5.8
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 5/21 (23%)
Query: 41 SSW----QCICDTNWGGILCD 57
SSW C C+ W G+LCD
Sbjct: 25 SSWLPTTDC-CNRTWLGVLCD 44
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 23.1 bits (50), Expect = 6.9
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 14 QCRPGWRGEFC----DQCKPYPGCKHG-YCN--GSSWQCICDTNWGGILCDQ 58
+C G+ G C ++C+ P CK+G C +++ C C + G C
Sbjct: 83 KCPRGFNGIHCQHNINECEVEP-CKNGGICTDLVANYSCECPGEFMGRNCQY 133
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 23.3 bits (49), Expect = 7.0
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 24 CDQCKPY-PGCKHGYCNGSSWQCICDTNWGGILCD 57
C +P P C G + C C G LC+
Sbjct: 459 CSDTQPQAPHCSDGQGHLQCGVCSCAPGRLGRLCE 493
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 22.8 bits (49), Expect = 8.4
Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 23/69 (33%)
Query: 13 VQCRPGWRGEFCDQCKP-----------YPGCK------------HGYCNGSSWQCICDT 49
++C G +CD+CK CK CN + QC C
Sbjct: 78 LKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLP 137
Query: 50 NWGGILCDQ 58
+ G C
Sbjct: 138 HVSGRDCGT 146
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 22.8 bits (48), Expect = 9.9
Identities = 14/61 (22%), Positives = 18/61 (29%), Gaps = 14/61 (22%)
Query: 14 QCRPGWRGEFCDQCKP--------------YPGCKHGYCNGSSWQCICDTNWGGILCDQG 59
C+ G C++C P C CNG S +C D G
Sbjct: 275 NCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHGG 334
Query: 60 H 60
H
Sbjct: 335 H 335
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.144 0.569
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 979,963
Number of extensions: 43951
Number of successful extensions: 569
Number of sequences better than 10.0: 1
Number of HSP's gapped: 476
Number of HSP's successfully gapped: 197
Length of query: 60
Length of database: 6,701,793
Length adjustment: 31
Effective length of query: 29
Effective length of database: 5,836,242
Effective search space: 169251018
Effective search space used: 169251018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)