RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17083
         (60 letters)



>d1y6kr2 b.1.2.1 (R:101-206) Interleukin-10 receptor 1, IL-10R1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 106

 Score = 26.3 bits (58), Expect = 0.13
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 17  PGWRGEFCDQCKPYPGCKHGYCNGSSWQCI 46
            G  GEFC Q KP    +      S  +CI
Sbjct: 74  SGEVGEFCVQVKPSVASRSNKGMWSKEECI 103


>d2cmza1 e.76.1.2 (A:1-409) Spike glycoprotein {Vesicular
          stomatitis indiana virus [TaxId: 11277]}
          Length = 409

 Score = 24.1 bits (52), Expect = 1.3
 Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 1/20 (5%)

Query: 35 HGY-CNGSSWQCICDTNWGG 53
           G+ C+ S W   CD  W G
Sbjct: 55 DGWMCHASKWVTTCDFRWYG 74


>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
          IIa) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 48

 Score = 22.5 bits (48), Expect = 1.9
 Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 3/37 (8%)

Query: 24 CDQCKPYPGCKHGYC--NGSSWQCICDTNWGGILCDQ 58
             C     C HG C     S+ C C + W G  C +
Sbjct: 8  EHPCASLC-CGHGTCIDGIGSFSCDCRSGWEGRFCQR 43


>d2gp4a2 d.334.1.1 (A:1-418) 6-phosphogluconate dehydratase EDD
           {Shewanella oneidensis [TaxId: 70863]}
          Length = 418

 Score = 23.1 bits (49), Expect = 2.9
 Identities = 8/43 (18%), Positives = 12/43 (27%)

Query: 7   RNIRASVQCRPGWRGEFCDQCKPYPGCKHGYCNGSSWQCICDT 49
           R   A  +       E   Q     G    Y   +S Q + + 
Sbjct: 194 RQQFAQGKVDRAQLLEAEAQSYHSAGTCTFYGTANSNQLMLEV 236


>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 290

 Score = 22.6 bits (48), Expect = 3.7
 Identities = 5/15 (33%), Positives = 7/15 (46%)

Query: 16  RPGWRGEFCDQCKPY 30
           +   R E C  C+ Y
Sbjct: 230 KAVLRAETCPSCQGY 244


>d1l1oc_ b.40.4.3 (C:) Replication protein A 70 KDa subunit
          (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 178

 Score = 21.4 bits (45), Expect = 9.5
 Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 8/30 (26%)

Query: 30 YPGCKHGYCN-------GSSWQCI-CDTNW 51
          Y  C    CN          ++C  CDT +
Sbjct: 40 YQACPTQDCNKKVIDQQNGLYRCEKCDTEF 69


>d1gyta2 c.56.5.3 (A:179-503) Leucine aminopeptidase, C-terminal
           domain {Escherichia coli, PepA [TaxId: 562]}
          Length = 325

 Score = 21.6 bits (45), Expect = 9.8
 Identities = 7/50 (14%), Positives = 15/50 (30%), Gaps = 1/50 (2%)

Query: 7   RNIRASVQCRPGWRGEFCDQCKPYPGCKHGYCNGSSWQCICDTNWGGILC 56
             +  +V                 PG      +G + + + +T+  G L 
Sbjct: 132 LQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVE-VLNTDAEGRLV 180


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.144    0.569 

Gapped
Lambda     K      H
   0.267   0.0404    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 271,269
Number of extensions: 11347
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 77
Length of query: 60
Length of database: 2,407,596
Length adjustment: 30
Effective length of query: 30
Effective length of database: 1,995,696
Effective search space: 59870880
Effective search space used: 59870880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)