BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17084
(721 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 77/116 (66%), Gaps = 4/116 (3%)
Query: 262 DADECQ--KSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNINDCVGQ-CRHGSTCIDL 318
D DEC +PC +A C N +G + C C G+TG C++++N+CV C++ +TC+D
Sbjct: 2 DVDECSLGANPCEHAG-KCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQ 60
Query: 319 VNDFHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCE 374
+ +F C C+PGY G C+ + ++C SSPC++ G C+D++N F+C CP GF G LC+
Sbjct: 61 IGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 68/128 (53%), Gaps = 23/128 (17%)
Query: 511 NPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHENINDCK 570
NPC++ G C++ + GSF+C C G++G C ++N+C
Sbjct: 11 NPCEHAGKCINTL-----------------------GSFECQCLQGYTGPRCEIDVNECV 47
Query: 571 HNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCK 630
NPCQN TC+D++ FQCIC G+EG C N +EC +PC +NG C+D +F C C
Sbjct: 48 SNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECP 107
Query: 631 NGWKGKTC 638
G+ G C
Sbjct: 108 TGFTGHLC 115
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 26/130 (20%)
Query: 309 CRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGF 368
C H CI+ + F C CL GYTG C+ D+N+C S+PC N C+DQ+ F+C
Sbjct: 13 CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQC------ 66
Query: 369 AGQLCENGGTCVNTGDLYSCICKEGFEGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCEC 428
IC G+EG C + ++C+ PC + G+C+D +N F CEC
Sbjct: 67 --------------------ICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCEC 106
Query: 429 APGFAGPDCR 438
GF G C+
Sbjct: 107 PTGFTGHLCQ 116
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 70/130 (53%), Gaps = 24/130 (18%)
Query: 471 SNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCIC 530
+NP +C++ + GSF+C C G++G C ++N+C NPCQN TC+D++ FQCIC
Sbjct: 10 ANPCEHAGKCIN-TLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCIC 68
Query: 531 RDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCI 590
G+E G +C N ++C +PC + G C+DK+N FQC
Sbjct: 69 MPGYE-----------------------GVHCEVNTDECASSPCLHNGRCLDKINEFQCE 105
Query: 591 CRDGWEGEIC 600
C G+ G +C
Sbjct: 106 CPTGFTGHLC 115
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 67/127 (52%), Gaps = 12/127 (9%)
Query: 172 QCVDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSN 231
Q VD NPC + C NT + C C + + G C D++ECVSN
Sbjct: 1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEI-----------DVNECVSN 49
Query: 232 PCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNCSP 291
PCQN TC+D + ++C C +EG +C+ + DEC SPC++ C + + +++C C
Sbjct: 50 PCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGR-CLDKINEFQCECPT 108
Query: 292 GWTGHNC 298
G+TGH C
Sbjct: 109 GFTGHLC 115
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 57/106 (53%)
Query: 572 NPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKN 631
NPC++ G C++ + SF+C C G+ G C + NEC NPC+N+ TC+D +F C+C
Sbjct: 11 NPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMP 70
Query: 632 GWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCH 677
G++G C C C H G C D + F C CP + G C
Sbjct: 71 GYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 61/130 (46%), Gaps = 26/130 (20%)
Query: 373 CENGGTCVNTGDLYSCICKEGFEGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCECAPGF 432
CE+ G C+NT + C C +G+ GP C D+N+C PC N C+D + F C C PG+
Sbjct: 13 CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGY 72
Query: 433 AGPDCRININECASNPCGYGKEILTVQSRSRSPAYLCVSNPAYLVARCVSQSGGSFKCSC 492
G C +N +ECAS+PC + RC+ + F+C C
Sbjct: 73 EGVHCEVNTDECASSPCLHN-------------------------GRCLDKI-NEFQCEC 106
Query: 493 DAGFSGKYCH 502
GF+G C
Sbjct: 107 PTGFTGHLCQ 116
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 610 NPCKNNGTCIDGHADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPP 669
NPC++ G CI+ F C C G+ G C C C++ TC D F C C P
Sbjct: 11 NPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMP 70
Query: 670 DWEGTSCHIGKLNACKSNPCKNGGTCVNTGDLYSCICKEGFVHAL 714
+EG C + + C S+PC + G C++ + + C C GF L
Sbjct: 71 GYEGVHCEVNT-DECASSPCLHNGRCLDKINEFQCECPTGFTGHL 114
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 25/130 (19%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVCAP 77
PC++ G C NT + C C +G++G CE+ N C+ PC N C + G+FQC+C P
Sbjct: 12 PCEHAGKCINTL-GSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMP 70
Query: 78 GWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGTCENTAPDQYLCTC 137
G+ G C++ + + C + PC + G C + +++ C C
Sbjct: 71 GYEGVHCEV----------------------NTDECAS-SPCLHNGRCLDKI-NEFQCEC 106
Query: 138 PEGFSGINCE 147
P GF+G C+
Sbjct: 107 PTGFTGHLCQ 116
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 23/116 (19%)
Query: 157 PCGNGGQCKETAGQFQC------------VDHDHCNPNPCLNGAPCFNTQADYYCHCTED 204
PC + G+C T G F+C +D + C NPC N A C + ++ C C
Sbjct: 12 PCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPG 71
Query: 205 WEGKNCSFPRYKCDNPPCDDIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQ 260
+EG +C + DEC S+PC + G C+D ++ ++CEC + G CQ
Sbjct: 72 YEGVHCEV-----------NTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 77/116 (66%), Gaps = 4/116 (3%)
Query: 262 DADECQ--KSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNINDCVGQ-CRHGSTCIDL 318
D DEC +PC +A C N +G + C C G+TG C++++N+CV C++ +TC+D
Sbjct: 4 DVDECSLGANPCEHAG-KCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQ 62
Query: 319 VNDFHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCE 374
+ +F C C+PGY G C+ + ++C SSPC++ G C+D++N F+C CP GF G LC+
Sbjct: 63 IGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 118
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 76/120 (63%), Gaps = 4/120 (3%)
Query: 224 DIDECV--SNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNL 281
D+DEC +NPC++ G C++ + ++C+C Q + G C+ D +EC +PC N A C +
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDAT-CLDQ 62
Query: 282 VGDYRCNCSPGWTGHNCDVNINDCVGQ-CRHGSTCIDLVNDFHCACLPGYTGRTCQTDIN 340
+G+++C C PG+ G +C+VN ++C C H C+D +N+F C C G+TG CQ D++
Sbjct: 63 IGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLH 122
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 23/134 (17%)
Query: 511 NPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHENINDCK 570
NPC++ G C++ + GSF+C C G++G C ++N+C
Sbjct: 13 NPCEHAGKCINTL-----------------------GSFECQCLQGYTGPRCEIDVNECV 49
Query: 571 HNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCK 630
NPCQN TC+D++ FQCIC G+EG C N +EC +PC +NG C+D +F C C
Sbjct: 50 SNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECP 109
Query: 631 NGWKGKTCTSKNGH 644
G+ G C H
Sbjct: 110 TGFTGHLCQVDLHH 123
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 71/132 (53%), Gaps = 12/132 (9%)
Query: 172 QCVDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSN 231
Q VD NPC + C NT + C C + + G C D++ECVSN
Sbjct: 3 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEI-----------DVNECVSN 51
Query: 232 PCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNCSP 291
PCQN TC+D + ++C C +EG +C+ + DEC SPC++ C + + +++C C
Sbjct: 52 PCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNG-RCLDKINEFQCECPT 110
Query: 292 GWTGHNCDVNIN 303
G+TGH C V+++
Sbjct: 111 GFTGHLCQVDLH 122
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 70/130 (53%), Gaps = 24/130 (18%)
Query: 471 SNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCIC 530
+NP +C++ + GSF+C C G++G C ++N+C NPCQN TC+D++ FQCIC
Sbjct: 12 ANPCEHAGKCIN-TLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCIC 70
Query: 531 RDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCI 590
G+E G +C N ++C +PC + G C+DK+N FQC
Sbjct: 71 MPGYE-----------------------GVHCEVNTDECASSPCLHNGRCLDKINEFQCE 107
Query: 591 CRDGWEGEIC 600
C G+ G +C
Sbjct: 108 CPTGFTGHLC 117
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 58/107 (54%)
Query: 572 NPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKN 631
NPC++ G C++ + SF+C C G+ G C + NEC NPC+N+ TC+D +F C+C
Sbjct: 13 NPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMP 72
Query: 632 GWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHI 678
G++G C C C H G C D + F C CP + G C +
Sbjct: 73 GYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQV 119
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 373 CENGGTCVNTGDLYSCICKEGFEGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCECAPGF 432
CE+ G C+NT + C C +G+ GP C D+N+C PC N C+D + F C C PG+
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGY 74
Query: 433 AGPDCRININECASNPCGYGKEILTVQSRSRSPAYLCVSNPAYLVARCVSQSGGSFKCSC 492
G C +N +ECAS+PC + RC+ + F+C C
Sbjct: 75 EGVHCEVNTDECASSPCLHN-------------------------GRCLDKI-NEFQCEC 108
Query: 493 DAGFSGKYCHENIN 506
GF+G C +++
Sbjct: 109 PTGFTGHLCQVDLH 122
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 25/131 (19%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVCAP 77
PC++ G C NT + C C +G++G CE+ N C+ PC N C + G+FQC+C P
Sbjct: 14 PCEHAGKCINTL-GSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMP 72
Query: 78 GWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGTCENTAPDQYLCTC 137
G+ G C++ + + C + PC + G C + +++ C C
Sbjct: 73 GYEGVHCEV----------------------NTDECAS-SPCLHNGRCLDKI-NEFQCEC 108
Query: 138 PEGFSGINCEV 148
P GF+G C+V
Sbjct: 109 PTGFTGHLCQV 119
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 601 ANNKNECE--PNPCKNNGTCIDGHADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCAD 658
A + +EC NPC++ G CI+ F C C G+ G C C C++ TC D
Sbjct: 2 AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLD 61
Query: 659 LGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGGTCVNTGDLYSCICKEGFVHAL 714
F C C P +EG C + + C S+PC + G C++ + + C C GF L
Sbjct: 62 QIGEFQCICMPGYEGVHCEVNT-DECASSPCLHNGRCLDKINEFQCECPTGFTGHL 116
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 38/145 (26%)
Query: 118 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVDHD 177
PC++ G C NT + C C +G++G CE+ N C+ PC N C + G+FQC+
Sbjct: 14 PCEHAGKCINTL-GSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCI--- 69
Query: 178 HCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQNGG 237
C +EG +C +C S+PC + G
Sbjct: 70 -----------------------CMPGYEGVHCEVNTDEC-----------ASSPCLHNG 95
Query: 238 TCVDLVDGYKCECTQAWEGSNCQYD 262
C+D ++ ++CEC + G CQ D
Sbjct: 96 RCLDKINEFQCECPTGFTGHLCQVD 120
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 177 DHCNPNPCLNGAPCFNTQAD--YYCHCTEDWEGKNCS-FPRYKCDNPPCDDIDECVSNPC 233
D C+PNPC NG C AD + C C + + NCS D C NPC
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60
Query: 234 QNGGTCV-------DLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYR 286
NGGTC D GY C+C + + G +CQ++ +EC+ PC N + CT+LV +Y
Sbjct: 61 HNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGI-CTDLVANYS 119
Query: 287 CNCSPGWTGHNC 298
C C + G NC
Sbjct: 120 CECPGEFMGRNC 131
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 66/143 (46%), Gaps = 20/143 (13%)
Query: 508 CKHNPCQNGGTCVDKV--NSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHEN 565
C NPC+NGG C+ + SF C C DG+ C++ + + AG
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAG--------- 53
Query: 566 INDCKHNPCQNGGTCV-------DKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTC 618
C NPC NGGTC D + C C G+ G C +N NECE PCKN G C
Sbjct: 54 --PCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGIC 111
Query: 619 IDGHADFTCLCKNGWKGKTCTSK 641
D A+++C C + G+ C K
Sbjct: 112 TDLVANYSCECPGEFMGRNCQYK 134
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 66/152 (43%), Gaps = 33/152 (21%)
Query: 118 PCQNGGTC-ENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVDH 176
PC+NGG C A + C CP+GF+ NC V + + + +
Sbjct: 7 PCENGGICLPGLADGSFSCECPDGFTDPNCSSV--------------VEVASDEEEPTSA 52
Query: 177 DHCNPNPCLNGAPCFNTQA-------DYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECV 229
C PNPC NG C ++A Y C C + G +C +I+EC
Sbjct: 53 GPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQH-----------NINECE 101
Query: 230 SNPCQNGGTCVDLVDGYKCECTQAWEGSNCQY 261
PC+NGG C DLV Y CEC + G NCQY
Sbjct: 102 VEPCKNGGICTDLVANYSCECPGEFMGRNCQY 133
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 68/144 (47%), Gaps = 25/144 (17%)
Query: 406 CSPQPCYNGGKCVDGV--NWFLCECAPGFAGPDCRININECASNPCGYGKEILTVQSRSR 463
C P PC NGG C+ G+ F CEC GF P+C ++ V S
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNC---------------SSVVEVASDEE 47
Query: 464 SP--AYLCVSNPAYLVARC-VSQS--GGSF---KCSCDAGFSGKYCHENINDCKHNPCQN 515
P A C NP + C +S++ G +F C C GF+G +C NIN+C+ PC+N
Sbjct: 48 EPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKN 107
Query: 516 GGTCVDKVNSFQCICRDGWEGEIC 539
GG C D V ++ C C + G C
Sbjct: 108 GGICTDLVANYSCECPGEFMGRNC 131
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 21/130 (16%)
Query: 569 CKHNPCQNGGTCVDKV--NSFQCICRDGWEGEIC------ANNKNE------CEPNPCKN 614
C NPC+NGG C+ + SF C C DG+ C A+++ E C PNPC N
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHN 62
Query: 615 NGTCI-------DGHADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHC 667
GTC D + C C G+ G C C+ CK+GG C DL +++ C C
Sbjct: 63 GGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCEC 122
Query: 668 PPDWEGTSCH 677
P ++ G +C
Sbjct: 123 PGEFMGRNCQ 132
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 67/151 (44%), Gaps = 21/151 (13%)
Query: 226 DECVSNPCQNGGTCVD-LVDG-YKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVG 283
D C NPC+NGG C+ L DG + CEC + NC S V A
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNC---------SSVVEVASDEEEPTS 51
Query: 284 DYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCE 343
C +P G C+++ + G T I V C C G+ G CQ +IN+CE
Sbjct: 52 AGPCTPNPCHNGGTCEIS------EAYRGDTFIGYV----CKCPRGFNGIHCQHNINECE 101
Query: 344 SSPCVNGGECVDQVNGFRCICPVGFAGQLCE 374
PC NGG C D V + C CP F G+ C+
Sbjct: 102 VEPCKNGGICTDLVANYSCECPGEFMGRNCQ 132
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 58/126 (46%), Gaps = 22/126 (17%)
Query: 607 CEPNPCKNNGTCIDGHAD--FTCLCKNGWKGKTCTS------------KNGHCDRGTCKH 652
C+PNPC+N G C+ G AD F+C C +G+ C+S G C C +
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHN 62
Query: 653 GGTC-------ADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGGTCVNTGDLYSCI 705
GGTC D + C CP + G C +N C+ PCKNGG C + YSC
Sbjct: 63 GGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQ-HNINECEVEPCKNGGICTDLVANYSCE 121
Query: 706 CKEGFV 711
C F+
Sbjct: 122 CPGEFM 127
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 54/127 (42%), Gaps = 28/127 (22%)
Query: 486 GSFKCSCDAGFSGKYCHENIN------------DCKHNPCQNGGTCVDKVNSFQCICRDG 533
GSF C C GF+ C + C NPC NGGTC +
Sbjct: 21 GSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCE---------ISEA 71
Query: 534 WEGEICANSNQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRD 593
+ G+ + C C GF+G +C NIN+C+ PC+NGG C D V ++ C C
Sbjct: 72 YRGDTFI-------GYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPG 124
Query: 594 GWEGEIC 600
+ G C
Sbjct: 125 EFMGRNC 131
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 58/134 (43%), Gaps = 29/134 (21%)
Query: 53 CMMGPCGNGGQCKE--TAGQFQCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDL 110
C PC NGG C G F C C G+T P C +S+ + SD
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNC----------------SSVVEVASDE 46
Query: 111 NYCG-----THEPCQNGGTCENTAPDQ------YLCTCPEGFSGINCEVVDNPCMMGPCG 159
T PC NGGTCE + + Y+C CP GF+GI+C+ N C + PC
Sbjct: 47 EEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCK 106
Query: 160 NGGQCKETAGQFQC 173
NGG C + + C
Sbjct: 107 NGGICTDLVANYSC 120
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 15 THEPCQNGGTCENTAPDQ------YLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETA 68
T PC NGGTCE + + Y+C CP GF+GI+C+ N C + PC NGG C +
Sbjct: 56 TPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLV 115
Query: 69 GQFQCVCAPGWTGPTCKIK 87
+ C C + G C+ K
Sbjct: 116 ANYSCECPGEFMGRNCQYK 134
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 55/130 (42%), Gaps = 33/130 (25%)
Query: 342 CESSPCVNGGECVDQV--NGFRCICPVGFAG------------------------QLCEN 375
C+ +PC NGG C+ + F C CP GF C N
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHN 62
Query: 376 GGTC----VNTGDL---YSCICKEGFEGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCEC 428
GGTC GD Y C C GF G C +IN+C +PC NGG C D V + CEC
Sbjct: 63 GGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCEC 122
Query: 429 APGFAGPDCR 438
F G +C+
Sbjct: 123 PGEFMGRNCQ 132
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 60/143 (41%), Gaps = 30/143 (20%)
Query: 18 PCQNGGTC-ENTAPDQYLCTCPEGFSGINCEVV------------DNPCMMGPCGNGGQC 64
PC+NGG C A + C CP+GF+ NC V PC PC NGG C
Sbjct: 7 PCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTC 66
Query: 65 KETAGQFQCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGT 124
+ + + G T F Y+ P + ++N C EPC+NGG
Sbjct: 67 EISE---------AYRGDT------FIGYVCKCPRGFNGIHCQHNINECEV-EPCKNGGI 110
Query: 125 CENTAPDQYLCTCPEGFSGINCE 147
C + + Y C CP F G NC+
Sbjct: 111 CTDLVAN-YSCECPGEFMGRNCQ 132
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 57/114 (50%), Gaps = 29/114 (25%)
Query: 35 CTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKIKHNFFPYL 94
C C G+ G+ C+ C+ P G C E +QC+C W G C
Sbjct: 85 CRCQYGWQGLYCDK----CIPHPGCVHGICNEP---WQCLCETNWGGQLCD--------- 128
Query: 95 QFIPLTTSLFRLLSDLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEV 148
DLNYCGTH+PC NGGTC NT PD+Y C+CPEG+SG NCE+
Sbjct: 129 -------------KDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEI 169
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/41 (73%), Positives = 35/41 (85%)
Query: 8 SDLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEV 48
DLNYCGTH+PC NGGTC NT PD+Y C+CPEG+SG NCE+
Sbjct: 129 KDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEI 169
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 60/140 (42%), Gaps = 31/140 (22%)
Query: 280 NLVGDYRCN------CSPGWTGHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGR 333
+ G Y C+ C GW G C+ I +HGS L D C C G+ G
Sbjct: 39 DFFGHYACDQNGNKTCMEGWMGPECNRAICRQGCSPKHGS--CKLPGD--CRCQYGWQGL 94
Query: 334 TCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCE-------------NGGTCV 380
C + C P G C + ++C+C + GQLC+ NGGTC
Sbjct: 95 YC----DKCIPHPGCVHGICNEP---WQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCS 147
Query: 381 NTG-DLYSCICKEGFEGPDC 399
NTG D Y C C EG+ GP+C
Sbjct: 148 NTGPDKYQCSCPEGYSGPNC 167
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 54/125 (43%), Gaps = 19/125 (15%)
Query: 590 ICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCTSKNGH--CDR 647
C +GW G C N+ C +G+C C C+ GW+G C H C
Sbjct: 53 TCMEGWMGPEC--NRAICRQGCSPKHGSC---KLPGDCRCQYGWQGLYCDKCIPHPGCVH 107
Query: 648 GTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSN-PCKNGGTCVNTG-DLYSCI 705
G C + C C +W G C LN C ++ PC NGGTC NTG D Y C
Sbjct: 108 GICN---------EPWQCLCETNWGGQLCDK-DLNYCGTHQPCLNGGTCSNTGPDKYQCS 157
Query: 706 CKEGF 710
C EG+
Sbjct: 158 CPEGY 162
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 589 CICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCTSKNGHC-DR 647
C C+ GW+G C ++C P+P +G C + + CLC+ W G+ C +C
Sbjct: 85 CRCQYGWQGLYC----DKCIPHPGCVHGIC---NEPWQCLCETNWGGQLCDKDLNYCGTH 137
Query: 648 GTCKHGGTCADLG-SSFFCHCPPDWEGTSCHI 678
C +GGTC++ G + C CP + G +C I
Sbjct: 138 QPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEI 169
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 362 CICPVGFAGQLCEN---GGTCVNT--GDLYSCICKEGFEGPDCGQDINDC-SPQPCYNGG 415
C C G+ G C+ CV+ + + C+C+ + G C +D+N C + QPC NGG
Sbjct: 85 CRCQYGWQGLYCDKCIPHPGCVHGICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGG 144
Query: 416 KCVD-GVNWFLCECAPGFAGPDCRI 439
C + G + + C C G++GP+C I
Sbjct: 145 TCSNTGPDKYQCSCPEGYSGPNCEI 169
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 52/124 (41%), Gaps = 23/124 (18%)
Query: 529 ICRDGWEGEICANS------NQSGGSFK----CSCDAGFSGKYCHENIND--CKHNPCQN 576
C +GW G C + + GS K C C G+ G YC + I C H C
Sbjct: 53 TCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCDKCIPHPGCVHGICNE 112
Query: 577 GGTCVDKVNSFQCICRDGWEGEICANNKNECEPN-PCKNNGTCIDGHAD-FTCLCKNGWK 634
+QC+C W G++C + N C + PC N GTC + D + C C G+
Sbjct: 113 ---------PWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYS 163
Query: 635 GKTC 638
G C
Sbjct: 164 GPNC 167
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 248 CECTQAWEGSNCQYDADECQKSPCVNAALGCTNLV--GDYRCNCSPGWTGHNCDVNINDC 305
C C W+G C D+C P GC + + ++C C W G CD ++N C
Sbjct: 85 CRCQYGWQGLYC----DKCIPHP------GCVHGICNEPWQCLCETNWGGQLCDKDLNYC 134
Query: 306 VGQ--CRHGSTCIDLVND-FHCACLPGYTGRTCQT 337
C +G TC + D + C+C GY+G C+
Sbjct: 135 GTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEI 169
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 21/104 (20%)
Query: 199 CHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSN 258
C C W+G C D+C+ +P G C + ++C C W G
Sbjct: 85 CRCQYGWQGLYC---------------DKCIPHPGCVHGICNEP---WQCLCETNWGGQL 126
Query: 259 CQYDADEC-QKSPCVNAALGCTNLVGD-YRCNCSPGWTGHNCDV 300
C D + C PC+N C+N D Y+C+C G++G NC++
Sbjct: 127 CDKDLNYCGTHQPCLNGGT-CSNTGPDKYQCSCPEGYSGPNCEI 169
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 76/161 (47%), Gaps = 27/161 (16%)
Query: 490 CSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSF 549
C C GF G +C + + + C NGG CV CIC G+ G C +N S F
Sbjct: 167 CECPDGFHGPHCEKALCTPR---CMNGGLCV---TPGFCICPPGFYGVNCDKANCSTTCF 220
Query: 550 ---------KCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 600
KC C G G+ C I+ C PC+NGG C+ K +C C G++G++C
Sbjct: 221 NGGTCFYPGKCICPPGLEGEQC--EISKCPQ-PCRNGGKCIGKS---KCKCSKGYQGDLC 274
Query: 601 ANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCTSK 641
+ K CEP C +GTC H C C+ GW G+ C +
Sbjct: 275 S--KPVCEPG-CGAHGTC---HEPNKCQCQEGWHGRHCNKR 309
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 71/143 (49%), Gaps = 27/143 (18%)
Query: 304 DCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCI 363
+C G CR+G C + C C G+ G C+ + + C+NGG CV GF CI
Sbjct: 150 ECPGGCRNGGFCNE---RRICECPDGFHGPHCEKALC---TPRCMNGGLCV--TPGF-CI 200
Query: 364 CPVGFAGQLCE---------NGGTCVNTGDLYSCICKEGFEGPDCGQDINDCSPQPCYNG 414
CP GF G C+ NGGTC G CIC G EG C +I+ C PQPC NG
Sbjct: 201 CPPGFYGVNCDKANCSTTCFNGGTCFYPG---KCICPPGLEGEQC--EISKC-PQPCRNG 254
Query: 415 GKCVDGVNWFLCECAPGFAGPDC 437
GKC+ C+C+ G+ G C
Sbjct: 255 GKCIGKSK---CKCSKGYQGDLC 274
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 62/137 (45%), Gaps = 22/137 (16%)
Query: 574 CQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGW 633
C+NGG C ++ C C DG+ G C K C P C N G C+ C+C G+
Sbjct: 155 CRNGGFCNERR---ICECPDGFHGPHC--EKALCTPR-CMNGGLCV---TPGFCICPPGF 205
Query: 634 KGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGG 693
G C N C TC +GGTC G C CPP EG C I K PC+NGG
Sbjct: 206 YGVNCDKAN--CST-TCFNGGTCFYPGK---CICPPGLEGEQCEISKC----PQPCRNGG 255
Query: 694 TCVNTGDLYSCICKEGF 710
C+ C C +G+
Sbjct: 256 KCIGKS---KCKCSKGY 269
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 79/204 (38%), Gaps = 53/204 (25%)
Query: 19 CQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVCAPG 78
C+NGG C ++ +C CP+GF G +CE C NGG C C+C PG
Sbjct: 155 CRNGGFCN----ERRICECPDGFHGPHCE---KALCTPRCMNGGLCVTPG---FCICPPG 204
Query: 79 WTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGTCENTAPDQYLCTCP 138
+ G C D C T C NGGTC C CP
Sbjct: 205 FYGVNC------------------------DKANCST--TCFNGGTCFYPGK----CICP 234
Query: 139 EGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQC-----VDHDHCNPNPCLNGAPCFNT 193
G G CE+ P PC NGG+C G+ +C D C+ C G T
Sbjct: 235 PGLEGEQCEISKCP---QPCRNGGKC---IGKSKCKCSKGYQGDLCSKPVCEPGCGAHGT 288
Query: 194 -QADYYCHCTEDWEGKNCSFPRYK 216
C C E W G++C+ RY+
Sbjct: 289 CHEPNKCQCQEGWHGRHCN-KRYE 311
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 74/187 (39%), Gaps = 40/187 (21%)
Query: 119 CQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETA-----GQFQC 173
C+NGG C ++ +C CP+GF G +CE C NGG C F
Sbjct: 155 CRNGGFCN----ERRICECPDGFHGPHCE---KALCTPRCMNGGLCVTPGFCICPPGFYG 207
Query: 174 VDHDHCN-PNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNP 232
V+ D N C NG CF C C EG+ C +I +C P
Sbjct: 208 VNCDKANCSTTCFNGGTCFYPGK---CICPPGLEGEQC-------------EISKC-PQP 250
Query: 233 CQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNCSPG 292
C+NGG C + KC+C++ ++G D C K C +C C G
Sbjct: 251 CRNGGKC---IGKSKCKCSKGYQG-------DLCSKPVCEPGCGAHGTCHEPNKCQCQEG 300
Query: 293 WTGHNCD 299
W G +C+
Sbjct: 301 WHGRHCN 307
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 59/155 (38%), Gaps = 44/155 (28%)
Query: 551 CSCDAGFSGKYCHENINDCKHNPCQNGGTCV----------------DKVN--------- 585
C C GF G +C + + + C NGG CV DK N
Sbjct: 167 CECPDGFHGPHCEKALCTPR---CMNGGLCVTPGFCICPPGFYGVNCDKANCSTTCFNGG 223
Query: 586 ----SFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCTSK 641
+CIC G EGE C +K P PC+N G CI C C G++G C+
Sbjct: 224 TCFYPGKCICPPGLEGEQCEISKC---PQPCRNGGKCI---GKSKCKCSKGYQGDLCSKP 277
Query: 642 NGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSC 676
C+ G H GTC + C C W G C
Sbjct: 278 V--CEPGCGAH-GTCHEPNK---CQCQEGWHGRHC 306
>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1FAK|L Chain L, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1WQV|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1WSS|L Chain L, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|L Chain L, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2A2Q|L Chain L, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AEI|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2ZP0|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|L Chain L, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
Length = 152
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVG 283
D D+C S+PCQNGG+C D + Y C C A+EG NC+ D+ + CVN GC
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD--QLICVNENGGCEQYCS 103
Query: 284 DY-----RCNCSPGWT 294
D+ C C G++
Sbjct: 104 DHTGTKRSCRCHEGYS 119
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 16/74 (21%)
Query: 337 TDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGG----TCVN----------- 381
+D + C SSPC NGG C DQ+ + C C F G+ CE CVN
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSD 104
Query: 382 -TGDLYSCICKEGF 394
TG SC C EG+
Sbjct: 105 HTGTKRSCRCHEGY 118
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 567 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNE 606
+ C +PCQNGG+C D++ S+ C C +EG C +K++
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 506 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGE----------ICANSN---------QSG 546
+ C +PCQNGG+C D++ S+ C C +EG IC N N +G
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 107
Query: 547 GSFKCSCDAGFS 558
C C G+S
Sbjct: 108 TKRSCRCHEGYS 119
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 68 AGQFQCVCAPGWTGPTCKIKHNFFPYLQFI---PLTTSLFRL-LSDLNYCGTHEPCQNGG 123
A F PG CK F + I T LF + SD + C + PCQNGG
Sbjct: 1 ANAFLXXLRPGSLXRXCKXXQCSFXXARXIFKDAXRTKLFWISYSDGDQCAS-SPCQNGG 59
Query: 124 TCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGG 162
+C++ Y+C C F G NCE + ++ NGG
Sbjct: 60 SCKDQL-QSYICFCLPAFEGRNCETHKDDQLICVNENGG 97
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 402 DINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININE 443
D + C+ PC NGG C D + ++C C P F G +C + ++
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 309 CRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGG---ECVDQVNGFR-CIC 364
C++G +C D + + C CLP + GR C+T +D NGG C D R C C
Sbjct: 55 CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRC 114
Query: 365 PVGFAGQLCENGGTCVNT 382
G++ L +G +C T
Sbjct: 115 HEGYS--LLADGVSCTPT 130
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 8 SDLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGG 62
SD + C + PCQNGG+C++ Y+C C F G NCE + ++ NGG
Sbjct: 45 SDGDQCAS-SPCQNGGSCKDQL-QSYICFCLPAFEGRNCETHKDDQLICVNENGG 97
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNIND 304
D D+C SPC N C + + Y C C P + G NC+ + +D
Sbjct: 46 DGDQCASSPCQNGG-SCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 175 DHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNC 210
D D C +PC NG C + Y C C +EG+NC
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 81
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 599 ICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGK----------TCTSKNGHCDRG 648
I ++ ++C +PC+N G+C D + C C ++G+ C ++NG C++
Sbjct: 42 ISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQY 101
Query: 649 TCKHGGT 655
H GT
Sbjct: 102 CSDHTGT 108
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 21/83 (25%)
Query: 640 SKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGGTCVN-- 697
S C C++GG+C D S+ C C P +EG +C K + CVN
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQL---------ICVNEN 95
Query: 698 ----------TGDLYSCICKEGF 710
TG SC C EG+
Sbjct: 96 GGCEQYCSDHTGTKRSCRCHEGY 118
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 51 NPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKIKHN 89
+ C PC NGG CK+ + C C P + G C+ +
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 86
>pdb|1Z6J|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|2AER|L Chain L, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2FIR|L Chain L, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|L Chain L, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2B8O|L Chain L, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2EC9|L Chain L, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|3TH2|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
Length = 142
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVG 283
D D+C S+PCQNGG+C D + Y C C A+EG NC+ D+ + CVN GC
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD--QLICVNENGGCEQYCS 103
Query: 284 DY-----RCNCSPGWT 294
D+ C C G++
Sbjct: 104 DHTGTKRSCRCHEGYS 119
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 16/74 (21%)
Query: 337 TDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGG----TCVN----------- 381
+D + C SSPC NGG C DQ+ + C C F G+ CE CVN
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSD 104
Query: 382 -TGDLYSCICKEGF 394
TG SC C EG+
Sbjct: 105 HTGTKRSCRCHEGY 118
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 567 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNE 606
+ C +PCQNGG+C D++ S+ C C +EG C +K++
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 506 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGE----------ICANSN---------QSG 546
+ C +PCQNGG+C D++ S+ C C +EG IC N N +G
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 107
Query: 547 GSFKCSCDAGFS 558
C C G+S
Sbjct: 108 TKRSCRCHEGYS 119
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 68 AGQFQCVCAPGWTGPTCKIKHNFFPYLQFI---PLTTSLFRL-LSDLNYCGTHEPCQNGG 123
A F PG CK F + I T LF + SD + C + PCQNGG
Sbjct: 1 ANAFLXXLRPGSLXRXCKXXQCSFXXARXIFKDAXRTKLFWISYSDGDQCAS-SPCQNGG 59
Query: 124 TCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGG 162
+C++ Y+C C F G NCE + ++ NGG
Sbjct: 60 SCKDQL-QSYICFCLPAFEGRNCETHKDDQLICVNENGG 97
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 402 DINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININE 443
D + C+ PC NGG C D + ++C C P F G +C + ++
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 309 CRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGG---ECVDQVNGFR-CIC 364
C++G +C D + + C CLP + GR C+T +D NGG C D R C C
Sbjct: 55 CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRC 114
Query: 365 PVGFAGQLCENGGTCVNT 382
G++ L +G +C T
Sbjct: 115 HEGYS--LLADGVSCTPT 130
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNIND 304
D D+C SPC N C + + Y C C P + G NC+ + +D
Sbjct: 46 DGDQCASSPCQNGG-SCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 175 DHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNC 210
D D C +PC NG C + Y C C +EG+NC
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 81
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 8 SDLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGG 62
SD + C + PCQNGG+C++ Y+C C F G NCE + ++ NGG
Sbjct: 45 SDGDQCAS-SPCQNGGSCKDQL-QSYICFCLPAFEGRNCETHKDDQLICVNENGG 97
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 599 ICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGK----------TCTSKNGHCDRG 648
I ++ ++C +PC+N G+C D + C C ++G+ C ++NG C++
Sbjct: 42 ISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQY 101
Query: 649 TCKHGGT 655
H GT
Sbjct: 102 CSDHTGT 108
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 640 SKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGG----TC 695
S C C++GG+C D S+ C C P +EG +C K + +NGG
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVN-ENGGCEQYCS 103
Query: 696 VNTGDLYSCICKEGF 710
+TG SC C EG+
Sbjct: 104 DHTGTKRSCRCHEGY 118
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 51 NPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKIKHN 89
+ C PC NGG CK+ + C C P + G C+ +
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 86
>pdb|1DVA|L Chain L, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|M Chain M, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
Length = 101
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVG 283
D D+C S+PCQNGG+C D + Y C C A+EG NC+ D+ + CVN GC
Sbjct: 5 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD--QLICVNENGGCEQYCS 62
Query: 284 DY-----RCNCSPGWT 294
D+ C C G++
Sbjct: 63 DHTGTKRSCRCHEGYS 78
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 16/74 (21%)
Query: 337 TDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGG----TCVN----------- 381
+D + C SSPC NGG C DQ+ + C C F G+ CE CVN
Sbjct: 4 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSD 63
Query: 382 -TGDLYSCICKEGF 394
TG SC C EG+
Sbjct: 64 HTGTKRSCRCHEGY 77
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 567 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNE 606
+ C +PCQNGG+C D++ S+ C C +EG C +K++
Sbjct: 7 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 46
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 506 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGE----------ICANSN---------QSG 546
+ C +PCQNGG+C D++ S+ C C +EG IC N N +G
Sbjct: 7 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 66
Query: 547 GSFKCSCDAGFS 558
C C G+S
Sbjct: 67 TKRSCRCHEGYS 78
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 402 DINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININE 443
D + C+ PC NGG C D + ++C C P F G +C + ++
Sbjct: 5 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 46
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 309 CRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGG---ECVDQVNGFR-CIC 364
C++G +C D + + C CLP + GR C+T +D NGG C D R C C
Sbjct: 14 CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRC 73
Query: 365 PVGFAGQLCENGGTCVNT 382
G++ L +G +C T
Sbjct: 74 HEGYS--LLADGVSCTPT 89
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 599 ICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGK----------TCTSKNGHCDRG 648
I ++ ++C +PC+N G+C D + C C ++G+ C ++NG C++
Sbjct: 1 ISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQY 60
Query: 649 TCKHGGT 655
H GT
Sbjct: 61 CSDHTGT 67
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNIND 304
D D+C SPC N C + + Y C C P + G NC+ + +D
Sbjct: 5 DGDQCASSPCQNGG-SCKDQLQSYICFCLPAFEGRNCETHKDD 46
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 175 DHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNC 210
D D C +PC NG C + Y C C +EG+NC
Sbjct: 5 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 40
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 8 SDLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKE- 66
SD + C + PCQNGG+C++ Y+C C F G NCE + ++ NGG C++
Sbjct: 4 SDGDQCAS-SPCQNGGSCKDQL-QSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQY 60
Query: 67 ----TAGQFQCVCAPGWT 80
T + C C G++
Sbjct: 61 CSDHTGTKRSCRCHEGYS 78
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 640 SKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGG----TC 695
S C C++GG+C D S+ C C P +EG +C K + +NGG
Sbjct: 4 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVN-ENGGCEQYCS 62
Query: 696 VNTGDLYSCICKEGF 710
+TG SC C EG+
Sbjct: 63 DHTGTKRSCRCHEGY 77
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 108 SDLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGG 162
SD + C + PCQNGG+C++ Y+C C F G NCE + ++ NGG
Sbjct: 4 SDGDQCAS-SPCQNGGSCKDQL-QSYICFCLPAFEGRNCETHKDDQLICVNENGG 56
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 51 NPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKIKHN 89
+ C PC NGG CK+ + C C P + G C+ +
Sbjct: 7 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 45
>pdb|1W0Y|L Chain L, Tf7a_3771 Complex
pdb|1W2K|L Chain L, Tf7a_4380 Complex
Length = 142
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVG 283
D D+C S+PCQNGG+C D + Y C C A+EG NC+ D+ + CVN GC
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD--QLICVNENGGCEQYCS 103
Query: 284 DY-----RCNCSPGWT 294
D+ C C G++
Sbjct: 104 DHTGTKRSCRCHEGYS 119
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 16/74 (21%)
Query: 337 TDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGG----TCVN----------- 381
+D + C SSPC NGG C DQ+ + C C F G+ CE CVN
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSD 104
Query: 382 -TGDLYSCICKEGF 394
TG SC C EG+
Sbjct: 105 HTGTKRSCRCHEGY 118
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 567 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNE 606
+ C +PCQNGG+C D++ S+ C C +EG C +K++
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 506 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGE----------ICANSN---------QSG 546
+ C +PCQNGG+C D++ S+ C C +EG IC N N +G
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 107
Query: 547 GSFKCSCDAGFS 558
C C G+S
Sbjct: 108 TKRSCRCHEGYS 119
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 402 DINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININE 443
D + C+ PC NGG C D + ++C C P F G +C + ++
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 68 AGQFQCVCAPGWTGPTCKIKHNFFPYLQFI---PLTTSLFRL-LSDLNYCGTHEPCQNGG 123
A F PG CK F + I T LF + SD + C + PCQNGG
Sbjct: 1 ANAFLXXLRPGSLXRXCKXXQCSFXXARXIFKDAERTKLFWISYSDGDQCAS-SPCQNGG 59
Query: 124 TCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGG 162
+C++ Y+C C F G NCE + ++ NGG
Sbjct: 60 SCKDQL-QSYICFCLPAFEGRNCETHKDDQLICVNENGG 97
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 309 CRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGG---ECVDQVNGFR-CIC 364
C++G +C D + + C CLP + GR C+T +D NGG C D R C C
Sbjct: 55 CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRC 114
Query: 365 PVGFAGQLCENGGTCVNT 382
G++ L +G +C T
Sbjct: 115 HEGYS--LLADGVSCTPT 130
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNIND 304
D D+C SPC N C + + Y C C P + G NC+ + +D
Sbjct: 46 DGDQCASSPCQNGG-SCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 175 DHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNC 210
D D C +PC NG C + Y C C +EG+NC
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 81
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 8 SDLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGG 62
SD + C + PCQNGG+C++ Y+C C F G NCE + ++ NGG
Sbjct: 45 SDGDQCAS-SPCQNGGSCKDQL-QSYICFCLPAFEGRNCETHKDDQLICVNENGG 97
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 599 ICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGK----------TCTSKNGHCDRG 648
I ++ ++C +PC+N G+C D + C C ++G+ C ++NG C++
Sbjct: 42 ISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQY 101
Query: 649 TCKHGGT 655
H GT
Sbjct: 102 CSDHTGT 108
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 640 SKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGG----TC 695
S C C++GG+C D S+ C C P +EG +C K + +NGG
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVN-ENGGCEQYCS 103
Query: 696 VNTGDLYSCICKEGF 710
+TG SC C EG+
Sbjct: 104 DHTGTKRSCRCHEGY 118
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 51 NPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKIKHN 89
+ C PC NGG CK+ + C C P + G C+ +
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 86
>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2B7D|L Chain L, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|L Chain L, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|L Chain L, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2FLR|L Chain L, Novel 5-azaindole Factor Viia Inhibitors
pdb|3ELA|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 152
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVG 283
D D+C S+PCQNGG+C D + Y C C A+EG NC+ D+ + CVN GC
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD--QLICVNENGGCEQYCS 103
Query: 284 DY-----RCNCSPGWT 294
D+ C C G++
Sbjct: 104 DHTGTKRSCRCHEGYS 119
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 16/74 (21%)
Query: 337 TDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGG----TCVN----------- 381
+D + C SSPC NGG C DQ+ + C C F G+ CE CVN
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSD 104
Query: 382 -TGDLYSCICKEGF 394
TG SC C EG+
Sbjct: 105 HTGTKRSCRCHEGY 118
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 567 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNE 606
+ C +PCQNGG+C D++ S+ C C +EG C +K++
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 506 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGE----------ICANSN---------QSG 546
+ C +PCQNGG+C D++ S+ C C +EG IC N N +G
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 107
Query: 547 GSFKCSCDAGFS 558
C C G+S
Sbjct: 108 TKRSCRCHEGYS 119
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 402 DINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININE 443
D + C+ PC NGG C D + ++C C P F G +C + ++
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 68 AGQFQCVCAPGWTGPTCKIKHNFFPYLQFI---PLTTSLFRL-LSDLNYCGTHEPCQNGG 123
A F PG CK + F + I T LF + SD + C + PCQNGG
Sbjct: 1 ANAFLEELRPGSLERECKEEQCSFEEAREIFKDAERTKLFWISYSDGDQCASS-PCQNGG 59
Query: 124 TCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGG 162
+C++ Y+C C F G NCE + ++ NGG
Sbjct: 60 SCKDQL-QSYICFCLPAFEGRNCETHKDDQLICVNENGG 97
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 309 CRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGG---ECVDQVNGFR-CIC 364
C++G +C D + + C CLP + GR C+T +D NGG C D R C C
Sbjct: 55 CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRC 114
Query: 365 PVGFAGQLCENGGTCVNT 382
G++ L +G +C T
Sbjct: 115 HEGYS--LLADGVSCTPT 130
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNIND 304
D D+C SPC N C + + Y C C P + G NC+ + +D
Sbjct: 46 DGDQCASSPCQNGG-SCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 8 SDLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGG 62
SD + C + PCQNGG+C++ Y+C C F G NCE + ++ NGG
Sbjct: 45 SDGDQCASS-PCQNGGSCKDQL-QSYICFCLPAFEGRNCETHKDDQLICVNENGG 97
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 175 DHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCS 211
D D C +PC NG C + Y C C +EG+NC
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 82
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 599 ICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGK----------TCTSKNGHCDRG 648
I ++ ++C +PC+N G+C D + C C ++G+ C ++NG C++
Sbjct: 42 ISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQY 101
Query: 649 TCKHGGT 655
H GT
Sbjct: 102 CSDHTGT 108
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 21/83 (25%)
Query: 640 SKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGGTCVN-- 697
S C C++GG+C D S+ C C P +EG +C K + CVN
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQL---------ICVNEN 95
Query: 698 ----------TGDLYSCICKEGF 710
TG SC C EG+
Sbjct: 96 GGCEQYCSDHTGTKRSCRCHEGY 118
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 51 NPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKIKHN 89
+ C PC NGG CK+ + C C P + G C+ +
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 86
>pdb|1J9C|L Chain L, Crystal Structure Of Tissue Factor-Factor Viia Complex
Length = 95
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 226 DECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDY 285
D+C S+PCQNGG+C D + Y C C A+EG NC+ D+ + CVN GC D+
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD--QLICVNENGGCEQYCSDH 58
Query: 286 -----RCNCSPGWT 294
C C G++
Sbjct: 59 TGTKRSCRCHEGYS 72
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 16/71 (22%)
Query: 340 NDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGG----TCVN------------TG 383
+ C SSPC NGG C DQ+ + C C F G+ CE CVN TG
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 60
Query: 384 DLYSCICKEGF 394
SC C EG+
Sbjct: 61 TKRSCRCHEGY 71
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 567 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNE 606
+ C +PCQNGG+C D++ S+ C C +EG C +K++
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 40
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 506 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGE----------ICANSN---------QSG 546
+ C +PCQNGG+C D++ S+ C C +EG IC N N +G
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 60
Query: 547 GSFKCSCDAGFS 558
C C G+S
Sbjct: 61 TKRSCRCHEGYS 72
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 404 NDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININE 443
+ C+ PC NGG C D + ++C C P F G +C + ++
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 40
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 309 CRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGG---ECVDQVNGFR-CIC 364
C++G +C D + + C CLP + GR C+T +D NGG C D R C C
Sbjct: 8 CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRC 67
Query: 365 PVGFAGQLCENGGTCVNT 382
G++ L +G +C T
Sbjct: 68 HEGYS--LLADGVSCTPT 83
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKE-----TAGQFQ 72
PCQNGG+C++ Y+C C F G NCE + ++ NGG C++ T +
Sbjct: 7 PCQNGGSCKDQL-QSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQYCSDHTGTKRS 64
Query: 73 CVCAPGWT 80
C C G++
Sbjct: 65 CRCHEGYS 72
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 118 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGG 162
PCQNGG+C++ Y+C C F G NCE + ++ NGG
Sbjct: 7 PCQNGGSCKDQL-QSYICFCLPAFEGRNCETHKDDQLICVNENGG 50
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 644 HCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGG----TCVNTG 699
C C++GG+C D S+ C C P +EG +C K + +NGG +TG
Sbjct: 2 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVN-ENGGCEQYCSDHTG 60
Query: 700 DLYSCICKEGF 710
SC C EG+
Sbjct: 61 TKRSCRCHEGY 71
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
Query: 605 NECEPNPCKNNGTCIDGHADFTCLCKNGWKGK----------TCTSKNGHCDRGTCKHGG 654
++C +PC+N G+C D + C C ++G+ C ++NG C++ H G
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 60
Query: 655 T 655
T
Sbjct: 61 T 61
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 177 DHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNC 210
D C +PC NG C + Y C C +EG+NC
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 34
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 51 NPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKIKHN 89
+ C PC NGG CK+ + C C P + G C+ +
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 39
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 264 DECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNIND 304
D+C SPC N C + + Y C C P + G NC+ + +D
Sbjct: 1 DQCASSPCQNGG-SCKDQLQSYICFCLPAFEGRNCETHKDD 40
>pdb|1QFK|L Chain L, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
Length = 104
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 227 ECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDY- 285
+C S+PCQNGG+C D + Y C C A+EG NC+ D+ + CVN GC D+
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD--QLICVNENGGCEQYCSDHT 58
Query: 286 ----RCNCSPGWT 294
C C G++
Sbjct: 59 GTKRSCRCHEGYS 71
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 31/70 (44%), Gaps = 16/70 (22%)
Query: 341 DCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGG----TCVN------------TGD 384
C SSPC NGG C DQ+ + C C F G+ CE CVN TG
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGT 60
Query: 385 LYSCICKEGF 394
SC C EG+
Sbjct: 61 KRSCRCHEGY 70
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 568 DCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNE 606
C +PCQNGG+C D++ S+ C C +EG C +K++
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 39
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 19/71 (26%)
Query: 507 DCKHNPCQNGGTCVDKVNSFQCICRDGWEGE----------ICANSN---------QSGG 547
C +PCQNGG+C D++ S+ C C +EG IC N N +G
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGT 60
Query: 548 SFKCSCDAGFS 558
C C G+S
Sbjct: 61 KRSCRCHEGYS 71
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 405 DCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININE 443
C+ PC NGG C D + ++C C P F G +C + ++
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 39
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 309 CRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGG---ECVDQVNGFR-CIC 364
C++G +C D + + C CLP + GR C+T +D NGG C D R C C
Sbjct: 7 CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRC 66
Query: 365 PVGFAGQLCENGGTCVNT 382
G++ L +G +C T
Sbjct: 67 HEGYS--LLADGVSCTPT 82
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKE-----TAGQFQ 72
PCQNGG+C++ Y+C C F G NCE + ++ NGG C++ T +
Sbjct: 6 PCQNGGSCKDQL-QSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQYCSDHTGTKRS 63
Query: 73 CVCAPGWT 80
C C G++
Sbjct: 64 CRCHEGYS 71
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 118 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGG 162
PCQNGG+C++ Y+C C F G NCE + ++ NGG
Sbjct: 6 PCQNGGSCKDQL-QSYICFCLPAFEGRNCETHKDDQLICVNENGG 49
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 644 HCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGG----TCVNTG 699
C C++GG+C D S+ C C P +EG +C K + +NGG +TG
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVN-ENGGCEQYCSDHTG 59
Query: 700 DLYSCICKEGF 710
SC C EG+
Sbjct: 60 TKRSCRCHEGY 70
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 53 CMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKIKHN 89
C PC NGG CK+ + C C P + G C+ +
Sbjct: 2 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 38
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 606 ECEPNPCKNNGTCIDGHADFTCLCKNGWKGK----------TCTSKNGHCDRGTCKHGGT 655
+C +PC+N G+C D + C C ++G+ C ++NG C++ H GT
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGT 60
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 178 HCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNC 210
C +PC NG C + Y C C +EG+NC
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 33
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 265 ECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNIND 304
+C SPC N C + + Y C C P + G NC+ + +D
Sbjct: 1 QCASSPCQNGG-SCKDQLQSYICFCLPAFEGRNCETHKDD 39
>pdb|2PUQ|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
Length = 94
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 227 ECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDY- 285
+C S+PCQNGG+C D + Y C C A+EG NC+ D+ + CVN GC D+
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD--QLICVNENGGCEQYCSDHT 58
Query: 286 ----RCNCSPGWT 294
C C G++
Sbjct: 59 GTKRSCRCHEGYS 71
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 31/69 (44%), Gaps = 16/69 (23%)
Query: 342 CESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGG----TCVN------------TGDL 385
C SSPC NGG C DQ+ + C C F G+ CE CVN TG
Sbjct: 2 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTK 61
Query: 386 YSCICKEGF 394
SC C EG+
Sbjct: 62 RSCRCHEGY 70
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 569 CKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNE 606
C +PCQNGG+C D++ S+ C C +EG C +K++
Sbjct: 2 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 39
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 19/70 (27%)
Query: 508 CKHNPCQNGGTCVDKVNSFQCICRDGWEGE----------ICANSN---------QSGGS 548
C +PCQNGG+C D++ S+ C C +EG IC N N +G
Sbjct: 2 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTK 61
Query: 549 FKCSCDAGFS 558
C C G+S
Sbjct: 62 RSCRCHEGYS 71
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 406 CSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININE 443
C+ PC NGG C D + ++C C P F G +C + ++
Sbjct: 2 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 39
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 309 CRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGG---ECVDQVNGFR-CIC 364
C++G +C D + + C CLP + GR C+T +D NGG C D R C C
Sbjct: 7 CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRC 66
Query: 365 PVGFAGQLCENGGTCVNT 382
G++ L +G +C T
Sbjct: 67 HEGYS--LLADGVSCTPT 82
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKE-----TAGQFQ 72
PCQNGG+C++ Y+C C F G NCE + ++ NGG C++ T +
Sbjct: 6 PCQNGGSCKDQL-QSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQYCSDHTGTKRS 63
Query: 73 CVCAPGWT 80
C C G++
Sbjct: 64 CRCHEGYS 71
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 118 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGG 162
PCQNGG+C++ Y+C C F G NCE + ++ NGG
Sbjct: 6 PCQNGGSCKDQL-QSYICFCLPAFEGRNCETHKDDQLICVNENGG 49
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 644 HCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGG----TCVNTG 699
C C++GG+C D S+ C C P +EG +C K + +NGG +TG
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVN-ENGGCEQYCSDHTG 59
Query: 700 DLYSCICKEGF 710
SC C EG+
Sbjct: 60 TKRSCRCHEGY 70
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 606 ECEPNPCKNNGTCIDGHADFTCLCKNGWKGK----------TCTSKNGHCDRGTCKHGGT 655
+C +PC+N G+C D + C C ++G+ C ++NG C++ H GT
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGT 60
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 53 CMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKIKHN 89
C PC NGG CK+ + C C P + G C+ +
Sbjct: 2 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 38
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 178 HCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNC 210
C +PC NG C + Y C C +EG+NC
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 33
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 265 ECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNIND 304
+C SPC N C + + Y C C P + G NC+ + +D
Sbjct: 1 QCASSPCQNGG-SCKDQLQSYICFCLPAFEGRNCETHKDD 39
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of
Mouse Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 504 NINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 539
++N+C NPCQN TC+D++ FQCIC G+EG C
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYC 36
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 565 NINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 600
++N+C NPCQN TC+D++ FQCIC G+EG C
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYC 36
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQ 260
D++EC+SNPCQN TC+D + ++C C +EG C+
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCE 37
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 338 DINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCE 374
D+N+C S+PC N C+DQ+ F+CIC G+ G CE
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCE 37
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 51 NPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKI 86
N C+ PC N C + G+FQC+C PG+ G C+I
Sbjct: 3 NECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 603 NKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTC 638
+ NEC NPC+N+ TC+D +F C+C G++G C
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYC 36
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 402 DINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRI 439
D+N+C PC N C+D + F C C PG+ G C I
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 301 NINDCVGQ-CRHGSTCIDLVNDFHCACLPGYTGRTCQT 337
++N+C+ C++ +TC+D + +F C C+PGY G C+
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDV 300
D +EC +PC N A C + +G+++C C PG+ G C++
Sbjct: 1 DVNECISNPCQNDA-TCLDQIGEFQCICMPGYEGVYCEI 38
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 681 LNACKSNPCKNGGTCVNTGDLYSCICKEGF 710
+N C SNPC+N TC++ + CIC G+
Sbjct: 2 VNECISNPCQNDATCLDQIGEFQCICMPGY 31
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 224 DIDECVSNPCQNG-GTCVDLVDGYKCECTQAWEG-----SNCQYDADECQKSPCVNAALG 277
DIDEC +P G G CV+ ++C+C + +E NC D DECQ+ P +
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNC-MDIDECQRDPLLCRGGV 60
Query: 278 CTNLVGDYRCNCSPGWTGHNCDVNINDCV 306
C N G YRC C P GH NI+ C+
Sbjct: 61 CHNTEGSYRCECPP---GHQLSPNISACI 86
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 175 DHDHCNPNPCLNG-APCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPC 233
D D C +P L G C NT D+ C C E +E F K C DIDEC +P
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYES---GFMMMK----NCMDIDECQRDPL 54
Query: 234 Q-NGGTCVDLVDGYKCECTQAWEGS 257
GG C + Y+CEC + S
Sbjct: 55 LCRGGVCHNTEGSYRCECPPGHQLS 79
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 315 CIDLVNDFHCACLPGYTGRTCQ----TDINDCESSPCV-NGGECVDQVNGFRCICPVGFA 369
C++ DF C C GY DI++C+ P + GG C + +RC CP G
Sbjct: 18 CVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGH- 76
Query: 370 GQLCENGGTCV 380
QL N C+
Sbjct: 77 -QLSPNISACI 86
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 377 GTCVNTGDLYSCICKEGFEG-----PDCGQDINDCSPQPCY-NGGKCVDGVNWFLCECAP 430
G CVNT + C C EG+E +C DI++C P GG C + + CEC P
Sbjct: 16 GQCVNTPGDFECKCDEGYESGFMMMKNC-MDIDECQRDPLLCRGGVCHNTEGSYRCECPP 74
Query: 431 G 431
G
Sbjct: 75 G 75
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 615 NGTCIDGHADFTCLCKNGWKGKTCTSKN----GHCDRGTCK-HGGTCADLGSSFFCHCPP 669
G C++ DF C C G++ KN C R GG C + S+ C CPP
Sbjct: 15 RGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPP 74
>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1EDM|C Chain C, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1IXA|A Chain A, The Three-Dimensional Structure Of The First Egf-Like
Module Of Human Factor Ix: Comparison With Egf And Tgf-A
Length = 39
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 337 TDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCE 374
D + CES+PC+NGG C D +N + C CP GF G+ CE
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQY 261
D D+C SNPC NGG+C D ++ Y+C C +EG NC+
Sbjct: 2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 506 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 539
+ C+ NPC NGG+C D +NS++C C G+EG+ C
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGKNC 37
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 567 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 600
+ C+ NPC NGG+C D +NS++C C G+EG+ C
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGKNC 37
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 21/39 (53%)
Query: 174 VDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSF 212
VD D C NPCLNG C + Y C C +EGKNC
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 402 DINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRI 439
D + C PC NGG C D +N + C C GF G +C +
Sbjct: 2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 605 NECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTC 638
++CE NPC N G+C D + C C G++GK C
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGKNC 37
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEV 48
PC NGG+C++ + Y C CP GF G NCE+
Sbjct: 10 PCLNGGSCKDDI-NSYECWCPFGFEGKNCEL 39
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 118 PCQNGGTCENTAPDQYLCTCPEGFSGINCEV 148
PC NGG+C++ + Y C CP GF G NCE+
Sbjct: 10 PCLNGGSCKDDI-NSYECWCPFGFEGKNCEL 39
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDV 300
D D+C+ +PC+N C + + Y C C G+ G NC++
Sbjct: 2 DGDQCESNPCLNGG-SCKDDINSYECWCPFGFEGKNCEL 39
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 48 VVDNPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKI 86
V + C PC NGG CK+ ++C C G+ G C++
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 682 NACKSNPCKNGGTCVNTGDLYSCICKEGF 710
+ C+SNPC NGG+C + + Y C C GF
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGF 32
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 644 HCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHI 678
C+ C +GG+C D +S+ C CP +EG +C +
Sbjct: 5 QCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
>pdb|1F7E|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, 20 Structures
pdb|1F7M|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, Minimized Average Structure
pdb|1FF7|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, 20 Structures
pdb|1FFM|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, Minimized Average
Structure
Length = 46
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADE 265
D D+C S+PCQNGG+C D + Y C C A+EG NC+ D+
Sbjct: 2 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 43
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 567 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNE 606
+ C +PCQNGG+C D++ S+ C C +EG C +K++
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 43
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 337 TDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCE 374
+D + C SSPC NGG C DQ+ + C C F G+ CE
Sbjct: 1 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 38
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 506 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGS 548
+ C +PCQNGG+C D++ S+ C C +EG C G +
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDGSA 46
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 402 DINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININE 443
D + C+ PC NGG C D + ++C C P F G +C + ++
Sbjct: 2 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 43
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 309 CRHGSTCIDLVNDFHCACLPGYTGRTCQTDIND 341
C++G +C D + + C CLP + GR C+T +D
Sbjct: 11 CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 43
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 175 DHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNC 210
D D C +PC NG C + Y C C +EG+NC
Sbjct: 2 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 37
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNIND 304
D D+C SPC N C + + Y C C P + G NC+ + +D
Sbjct: 2 DGDQCASSPCQNGG-SCKDQLQSYICFCLPAFEGRNCETHKDD 43
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 8 SDLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEV 48
SD + C + PCQNGG+C++ Y+C C F G NCE
Sbjct: 1 SDGDQCAS-SPCQNGGSCKDQL-QSYICFCLPAFEGRNCET 39
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 108 SDLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEV 148
SD + C + PCQNGG+C++ Y+C C F G NCE
Sbjct: 1 SDGDQCAS-SPCQNGGSCKDQL-QSYICFCLPAFEGRNCET 39
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 51 NPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKIKHN 89
+ C PC NGG CK+ + C C P + G C+ +
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 42
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 640 SKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGK 680
S C C++GG+C D S+ C C P +EG +C K
Sbjct: 1 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHK 41
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 605 NECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCTSKNGHCDRGT 649
++C +PC+N G+C D + C C ++G+ C + H D G+
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCET---HKDDGS 45
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 337 TDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTC 379
D + CE +PC+NGG C D +N + C C VGF G+ CE TC
Sbjct: 46 VDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATC 88
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDA 263
D D+C NPC NGG C D ++ Y+C C +EG NC+ DA
Sbjct: 47 DGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDA 86
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 144 INCEVVDNPCMMGPCGNGGQCKETAGQF--QCVDHDHCNPNPCLNGAPCFNTQADYYCHC 201
+ E ++ C + E +F Q VD D C PNPCLNG C + Y C C
Sbjct: 14 LERECIEEKCSFEEAREVFENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWC 73
Query: 202 TEDWEGKNCSF 212
+EGKNC
Sbjct: 74 QVGFEGKNCEL 84
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 506 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEG---EICANSNQSGGSFKCSCDAGFSGK 560
+ C+ NPC NGG C D +NS++C C+ G+EG E+ A N G K C G K
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSK 106
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 567 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 600
+ C+ NPC NGG C D +NS++C C+ G+EG+ C
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNC 82
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 402 DINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRIN 440
D + C P PC NGG C D +N + C C GF G +C ++
Sbjct: 47 DGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELD 85
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 13/78 (16%)
Query: 260 QY-DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDV----NIND--CVGQCRHG 312
QY D D+C+ +PC+N L C + + Y C C G+ G NC++ NI + C C+ G
Sbjct: 44 QYVDGDQCEPNPCLNGGL-CKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTG 102
Query: 313 STCIDLVNDFHCACLPGY 330
+ L C+C GY
Sbjct: 103 ADSKVL-----CSCTTGY 115
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 51 NPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKI 86
+ C PC NGG CK+ ++C C G+ G C++
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCEL 84
>pdb|1BF9|A Chain A, N-Terminal Egf-Like Domain From Human Factor Vii, Nmr, 23
Structures
Length = 41
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQ 260
D D+C S+PCQNGG+C D + Y C C A+EG NC+
Sbjct: 2 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 38
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 337 TDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCE 374
+D + C SSPC NGG C DQ+ + C C F G+ CE
Sbjct: 1 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 38
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 567 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNK 604
+ C +PCQNGG+C D++ S+ C C +EG C +K
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHK 41
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 506 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 539
+ C +PCQNGG+C D++ S+ C C +EG C
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 37
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 402 DINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRIN 440
D + C+ PC NGG C D + ++C C P F G +C +
Sbjct: 2 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETH 40
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 175 DHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNC 210
D D C +PC NG C + Y C C +EG+NC
Sbjct: 2 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 37
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 309 CRHGSTCIDLVNDFHCACLPGYTGRTCQT 337
C++G +C D + + C CLP + GR C+T
Sbjct: 11 CQNGGSCKDQLQSYICFCLPAFEGRNCET 39
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 8 SDLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEV 48
SD + C + PCQNGG+C++ Y+C C F G NCE
Sbjct: 1 SDGDQCAS-SPCQNGGSCKDQL-QSYICFCLPAFEGRNCET 39
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 108 SDLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEV 148
SD + C + PCQNGG+C++ Y+C C F G NCE
Sbjct: 1 SDGDQCAS-SPCQNGGSCKDQL-QSYICFCLPAFEGRNCET 39
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 640 SKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGK 680
S C C++GG+C D S+ C C P +EG +C K
Sbjct: 1 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHK 41
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVN 301
D D+C SPC N C + + Y C C P + G NC+ +
Sbjct: 2 DGDQCASSPCQNGG-SCKDQLQSYICFCLPAFEGRNCETH 40
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 51 NPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCK 85
+ C PC NGG CK+ + C C P + G C+
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 38
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 605 NECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCTS 640
++C +PC+N G+C D + C C ++G+ C +
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCET 39
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 214 RYKCDNPPCDDIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVN 273
RYK +P C+S PC + G+C D + GY C C+ +EGSNC+ +EC
Sbjct: 1 RYKGGSP-------CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDG 53
Query: 274 AALGCTNLVGDYRCNCSPGW 293
C Y C+C+ G+
Sbjct: 54 CQHFCLPGQESYTCSCAQGY 73
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 569 CKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKN-NGTCIDGHADFTC 627
C PC + G+C D + + C C G+EG C KNEC P C+ G +TC
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTC 67
Query: 628 LCKNGWK 634
C G++
Sbjct: 68 SCAQGYR 74
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 406 CSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININEC 444
C QPC + G C D + + C C+PG+ G +C + NEC
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNEC 46
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 16/81 (19%)
Query: 342 CESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGGT-------------CVNTGDLYSC 388
C S PC++ G C D + G+ C C G+ G CE C+ + Y+C
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTC 67
Query: 389 ICKEGFEGPDCGQDINDCSPQ 409
C +G+ G+D C P
Sbjct: 68 SCAQGYR---LGEDHKQCVPH 85
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 266 CQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNINDCVGQ----CRHGSTCIDLVND 321
C PC++ C + + Y C CSPG+ G NC++ N+C + C+H C+
Sbjct: 8 CISQPCLHNG-SCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQES 64
Query: 322 FHCACLPGY 330
+ C+C GY
Sbjct: 65 YTCSCAQGY 73
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 650 CKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGG---TCVNTGDLYSCIC 706
C H G+C D + C C P +EG++C + K N C +P + G C+ + Y+C C
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGYEGSNCELAK-NEC--HPERTDGCQHFCLPGQESYTCSC 69
Query: 707 KEGF 710
+G+
Sbjct: 70 AQGY 73
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 17 EPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPC 53
+PC + G+C+++ Y CTC G+ G NCE+ N C
Sbjct: 11 QPCLHNGSCQDSIWG-YTCTCSPGYEGSNCELAKNEC 46
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 117 EPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPC 153
+PC + G+C+++ Y CTC G+ G NCE+ N C
Sbjct: 11 QPCLHNGSCQDSIWG-YTCTCSPGYEGSNCELAKNEC 46
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 371 QLCENGGTCVNTGDLYSCICKEGFEGPDCGQDINDCSPQPCYN-GGKCVDGVNWFLCECA 429
Q C + G+C ++ Y+C C G+EG +C N+C P+ C+ G + C CA
Sbjct: 11 QPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCA 70
Query: 430 PGF 432
G+
Sbjct: 71 QGY 73
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 305 CVGQ-CRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDC 342
C+ Q C H +C D + + C C PGY G C+ N+C
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNEC 46
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 607 CEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCTSKNGHC 645
C PC +NG+C D +TC C G++G C C
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNEC 46
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 28/99 (28%)
Query: 582 DKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKG------ 635
DK N F +DG ++CE +PC+N G C DG ++TC C G++G
Sbjct: 30 DKTNEFWNKYKDG----------DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF 79
Query: 636 --KTCTSKNGHCDRG----------TCKHGGTCADLGSS 662
K C+ NG CD+ +C G T AD G +
Sbjct: 80 TRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKA 118
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 502 HENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKY 561
+++ + C+ +PCQN G C D + + C C +G+EG+ C + CS D G ++
Sbjct: 39 YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRK----LCSLDNGDCDQF 94
Query: 562 CHENIN 567
CHE N
Sbjct: 95 CHEEQN 100
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 59/162 (36%), Gaps = 47/162 (29%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVND 321
D D+C+ SPC N C + +G+Y C C G+ G NC++
Sbjct: 41 DGDQCETSPCQNQG-KCKDGLGEYTCTCLEGFEGKNCEL--------------------- 78
Query: 322 FHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVN 381
+T + C D DC+ C ++ N C C G+ L +NG C+
Sbjct: 79 --------FTRKLCSLDNGDCDQF-------CHEEQNSVVCSCARGYT--LADNGKACIP 121
Query: 382 TGDLYSCICKEGFEGPDCGQDINDCSPQPCYNGGKCVDGVNW 423
TG Y C G + Q + G+ D + W
Sbjct: 122 TGP-YPC-------GKQTLERRKRSVAQATSSSGEAPDSITW 155
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 203 EDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQ 260
ED + N + +YK D D+C ++PCQN G C D + Y C C + +EG NC+
Sbjct: 27 EDSDKTNEFWNKYK-------DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 77
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQ-CKETAGQFQCVCA 76
PCQN G C++ +Y CTC EGF G NCE+ G+ Q C E C CA
Sbjct: 49 PCQNQGKCKD-GLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCA 107
Query: 77 PGWT 80
G+T
Sbjct: 108 RGYT 111
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 401 QDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRI 439
+D + C PC N GKC DG+ + C C GF G +C +
Sbjct: 40 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 78
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 175 DHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCS-FPRYKC--DNPPCDDI 225
D D C +PC N C + +Y C C E +EGKNC F R C DN CD
Sbjct: 41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQF 94
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 100 TTSLFRLLSDLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVV 149
T + D + C T PCQN G C++ +Y CTC EGF G NCE+
Sbjct: 32 TNEFWNKYKDGDQCETS-PCQNQGKCKD-GLGEYTCTCLEGFEGKNCELF 79
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 51 NPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKI 86
+ C PC N G+CK+ G++ C C G+ G C++
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 78
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 563 HENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 600
+++ + C+ +PCQN G C D + + C C +G+EG+ C
Sbjct: 39 YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNC 76
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 682 NACKSNPCKNGGTCVNTGDLYSCICKEGFVHA--LLFTRR 719
+ C+++PC+N G C + Y+C C EGF LFTR+
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRK 82
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 337 TDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTC 379
D + CE +PC+NGG C +N + C C VGF G+ CE TC
Sbjct: 46 VDGDQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELDATC 88
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 22/41 (53%)
Query: 172 QCVDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSF 212
Q VD D C PNPCLNG C Y C C +EGKNC
Sbjct: 44 QYVDGDQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCEL 84
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDA 263
D D+C NPC NGG C ++ Y+C C +EG NC+ DA
Sbjct: 47 DGDQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELDA 86
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 506 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEG---EICANSNQSGGSFKCSCDAGFSGK 560
+ C+ NPC NGG C +NS++C C+ G+EG E+ A N G K C G K
Sbjct: 49 DQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSK 106
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 567 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 600
+ C+ NPC NGG C +NS++C C+ G+EG+ C
Sbjct: 49 DQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNC 82
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 402 DINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRIN 440
D + C P PC NGG C +N + C C GF G +C ++
Sbjct: 47 DGDQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELD 85
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 260 QY-DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVN 301
QY D D+C+ +PC+N L C + Y C C G+ G NC+++
Sbjct: 44 QYVDGDQCEPNPCLNGGL-CKXDINSYECWCQVGFEGKNCELD 85
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 28/99 (28%)
Query: 582 DKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKG------ 635
DK N F +DG ++CE +PC+N G C DG ++TC C G++G
Sbjct: 30 DKTNEFWNKYKDG----------DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF 79
Query: 636 --KTCTSKNGHCDRG----------TCKHGGTCADLGSS 662
K C+ NG CD+ +C G T AD G +
Sbjct: 80 TRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKA 118
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 502 HENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKY 561
+++ + C+ +PCQN G C D + + C C +G+EG+ C + CS D G ++
Sbjct: 39 YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRK----LCSLDNGDCDQF 94
Query: 562 CHENIN 567
CHE N
Sbjct: 95 CHEEQN 100
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQ-CKETAGQFQCVCA 76
PCQN G C++ +Y CTC EGF G NCE+ G+ Q C E C CA
Sbjct: 49 PCQNQGKCKD-GLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCA 107
Query: 77 PGWT 80
G+T
Sbjct: 108 RGYT 111
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 39/122 (31%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVND 321
D D+C+ SPC N C + +G+Y C C G+ G NC++
Sbjct: 41 DGDQCETSPCQNQG-KCKDGLGEYTCTCLEGFEGKNCEL--------------------- 78
Query: 322 FHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVN 381
+T + C D DC+ C ++ N C C G+ L +NG C+
Sbjct: 79 --------FTRKLCSLDNGDCDQF-------CHEEQNSVVCSCARGYT--LADNGKACIP 121
Query: 382 TG 383
TG
Sbjct: 122 TG 123
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 203 EDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQ 260
ED + N + +YK D D+C ++PCQN G C D + Y C C + +EG NC+
Sbjct: 27 EDSDKTNEFWNKYK-------DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 77
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 401 QDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRI 439
+D + C PC N GKC DG+ + C C GF G +C +
Sbjct: 40 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 78
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 175 DHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCS-FPRYKC--DNPPCDDI 225
D D C +PC N C + +Y C C E +EGKNC F R C DN CD
Sbjct: 41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQF 94
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 100 TTSLFRLLSDLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVV 149
T + D + C T PCQN G C++ +Y CTC EGF G NCE+
Sbjct: 32 TNEFWNKYKDGDQCETS-PCQNQGKCKD-GLGEYTCTCLEGFEGKNCELF 79
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 51 NPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKI 86
+ C PC N G+CK+ G++ C C G+ G C++
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 78
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 563 HENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 600
+++ + C+ +PCQN G C D + + C C +G+EG+ C
Sbjct: 39 YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNC 76
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 682 NACKSNPCKNGGTCVNTGDLYSCICKEGF--VHALLFTRR 719
+ C+++PC+N G C + Y+C C EGF + LFTR+
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRK 82
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 28/99 (28%)
Query: 582 DKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKG------ 635
DK N F +DG ++CE +PC+N G C DG ++TC C G++G
Sbjct: 35 DKTNXFWNKYKDG----------DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF 84
Query: 636 --KTCTSKNGHCDRG----------TCKHGGTCADLGSS 662
K C+ NG CD+ +C G T AD G +
Sbjct: 85 TRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKA 123
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 502 HENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKY 561
+++ + C+ +PCQN G C D + + C C +G+EG+ C + CS D G ++
Sbjct: 44 YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRK----LCSLDNGDCDQF 99
Query: 562 CHENIN 567
CHE N
Sbjct: 100 CHEEQN 105
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQ-CKETAGQFQCVCA 76
PCQN G C++ +Y CTC EGF G NCE+ G+ Q C E C CA
Sbjct: 54 PCQNQGKCKD-GLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCA 112
Query: 77 PGWT 80
G+T
Sbjct: 113 RGYT 116
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQ 260
D D+C ++PCQN G C D + Y C C + +EG NC+
Sbjct: 46 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 82
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 39/122 (31%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVND 321
D D+C+ SPC N C + +G+Y C C G+ G NC++
Sbjct: 46 DGDQCETSPCQNQG-KCKDGLGEYTCTCLEGFEGKNCEL--------------------- 83
Query: 322 FHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVN 381
+T + C D DC+ C ++ N C C G+ L +NG C+
Sbjct: 84 --------FTRKLCSLDNGDCDQF-------CHEEQNSVVCSCARGYT--LADNGKACIP 126
Query: 382 TG 383
TG
Sbjct: 127 TG 128
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 401 QDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRI 439
+D + C PC N GKC DG+ + C C GF G +C +
Sbjct: 45 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 83
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 175 DHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCS-FPRYKC--DNPPCDDI 225
D D C +PC N C + +Y C C E +EGKNC F R C DN CD
Sbjct: 46 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQF 99
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 100 TTSLFRLLSDLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVV 149
T + D + C T PCQN G C++ +Y CTC EGF G NCE+
Sbjct: 37 TNXFWNKYKDGDQCET-SPCQNQGKCKD-GLGEYTCTCLEGFEGKNCELF 84
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 563 HENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 600
+++ + C+ +PCQN G C D + + C C +G+EG+ C
Sbjct: 44 YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNC 81
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 51 NPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKI 86
+ C PC N G+CK+ G++ C C G+ G C++
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 83
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 682 NACKSNPCKNGGTCVNTGDLYSCICKEGF--VHALLFTRR 719
+ C+++PC+N G C + Y+C C EGF + LFTR+
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRK 87
>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 98
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 370 GQLCENGGTCVNTGDLYSCICKEGFEGPDCGQDIN--DCSPQPCYNGG---KCVDGVNWF 424
LC GTC++ +SC C+ G+EG C ++++ +CS NGG C++ V W
Sbjct: 12 ASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLD---NGGCTHYCLEEVGWR 68
Query: 425 LCECAPGFAGPDCRININECASNPCG 450
C CAPG+ D + + PCG
Sbjct: 69 RCSCAPGYKLGDDLLQCHPAVKFPCG 94
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 517 GTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHENI 566
GTC+D + SF C CR GWEG C + CS D G YC E +
Sbjct: 19 GTCIDGIGSFSCDCRSGWEGRFC---QREVSFLNCSLDNGGCTHYCLEEV 65
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 13/64 (20%)
Query: 237 GTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAAL---GCTNL----VGDYRCNC 289
GTC+D + + C+C WEG CQ + +N +L GCT+ VG RC+C
Sbjct: 19 GTCIDGIGSFSCDCRSGWEGRFCQREVSF------LNCSLDNGGCTHYCLEEVGWRRCSC 72
Query: 290 SPGW 293
+PG+
Sbjct: 73 APGY 76
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 578 GTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKT 637
GTC+D + SF C CR GWEG C + N +NG C CL + GW+ +
Sbjct: 19 GTCIDGIGSFSCDCRSGWEGRFCQREVSFL--NCSLDNGGCTH-----YCLEEVGWRRCS 71
Query: 638 CT 639
C
Sbjct: 72 CA 73
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 309 CRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGG---ECVDQVNGFRCICP 365
C HG TCID + F C C G+ GR CQ +++ S NGG C+++V RC C
Sbjct: 16 CGHG-TCIDGIGSFSCDCRSGWEGRFCQREVSFLNCS-LDNGGCTHYCLEEVGWRRCSCA 73
Query: 366 VGF 368
G+
Sbjct: 74 PGY 76
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 278 CTNLVGDYRCNCSPGWTGHNC--DVNINDCV---GQCRHGSTCIDLVNDFHCACLPGY 330
C + +G + C+C GW G C +V+ +C G C H C++ V C+C PGY
Sbjct: 21 CIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTH--YCLEEVGWRRCSCAPGY 76
>pdb|1AUT|L Chain L, Human Activated Protein C
Length = 114
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 370 GQLCENGGTCVNTGDLYSCICKEGFEGPDCGQDIN--DCSPQPCYNGG---KCVDGVNWF 424
LC GTC+ +SC C+ G+EG C ++++ +CS NGG C++ V W
Sbjct: 19 ASLCCGHGTCIXGIGSFSCDCRSGWEGRFCQREVSFLNCSLD---NGGCTHYCLEEVGWR 75
Query: 425 LCECAPGFAGPDCRININECASNPCG 450
C CAPG+ D + + PCG
Sbjct: 76 RCSCAPGYKLGDDLLQCHPAVKFPCG 101
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 517 GTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHENI 566
GTC+ + SF C CR GWEG C + CS D G YC E +
Sbjct: 26 GTCIXGIGSFSCDCRSGWEGRFC---QREVSFLNCSLDNGGCTHYCLEEV 72
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 21/86 (24%)
Query: 224 DIDECVSNPCQN--------GGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAA 275
D D+C+ P ++ GTC+ + + C+C WEG CQ + +N +
Sbjct: 5 DGDQCLVLPLEHPCASLCCGHGTCIXGIGSFSCDCRSGWEGRFCQREVSF------LNCS 58
Query: 276 L---GCTNL----VGDYRCNCSPGWT 294
L GCT+ VG RC+C+PG+
Sbjct: 59 LDNGGCTHYCLEEVGWRRCSCAPGYK 84
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 578 GTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKT 637
GTC+ + SF C CR GWEG C + N +NG C CL + GW+ +
Sbjct: 26 GTCIXGIGSFSCDCRSGWEGRFCQREVSFL--NCSLDNGGCTH-----YCLEEVGWRRCS 78
Query: 638 CT 639
C
Sbjct: 79 CA 80
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 309 CRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGG---ECVDQVNGFRCICP 365
C HG TCI + F C C G+ GR CQ +++ S NGG C+++V RC C
Sbjct: 23 CGHG-TCIXGIGSFSCDCRSGWEGRFCQREVSFLNCS-LDNGGCTHYCLEEVGWRRCSCA 80
Query: 366 VGF 368
G+
Sbjct: 81 PGY 83
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 260 QYDADECQ----KSPCVNAALG---CTNLVGDYRCNCSPGWTGHNC--DVNINDCV---G 307
D D+C + PC + G C +G + C+C GW G C +V+ +C G
Sbjct: 3 HVDGDQCLVLPLEHPCASLCCGHGTCIXGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNG 62
Query: 308 QCRHGSTCIDLVNDFHCACLPGYT 331
C H C++ V C+C PGY
Sbjct: 63 GCTH--YCLEEVGWRRCSCAPGYK 84
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 605 NECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTC---TSKNGHCDRGTCKHGGTCADLGS 661
++CE +PC+N G C DG ++TC C G++GK C T K D G C C + +
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQA 62
Query: 662 SFFCHCPPDW 671
S C C +
Sbjct: 63 SVVCSCARGY 72
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 502 HENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKY 561
+++ + C+ +PCQN G C D + + C C +G+EG+ C + CS D G ++
Sbjct: 1 YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRK----LCSLDNGDCDQF 56
Query: 562 CHEN 565
CHE
Sbjct: 57 CHEE 60
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQ-CKETAGQFQCVCA 76
PCQN G C++ +Y CTC EGF G NCE+ G+ Q C E C CA
Sbjct: 11 PCQNQGKCKD-GLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQASVVCSCA 69
Query: 77 PGWT 80
G+T
Sbjct: 70 RGYT 73
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQ 260
D D+C ++PCQN G C D + Y C C + +EG NC+
Sbjct: 3 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 39
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 401 QDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRI 439
+D + C PC N GKC DG+ + C C GF G +C +
Sbjct: 2 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 40
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 175 DHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCS-FPRYKC--DNPPCDDI 225
D D C +PC N C + +Y C C E +EGKNC F R C DN CD
Sbjct: 3 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQF 56
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 563 HENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICAN-NKNECEPNPCKNNGTCIDG 621
+++ + C+ +PCQN G C D + + C C +G+EG+ C + C + + C +
Sbjct: 1 YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEE 60
Query: 622 HADFTCLCKNGW 633
A C C G+
Sbjct: 61 QASVVCSCARGY 72
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 39/122 (31%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVND 321
D D+C+ SPC N C + +G+Y C C G+ G NC++
Sbjct: 3 DGDQCETSPCQNQG-KCKDGLGEYTCTCLEGFEGKNCEL--------------------- 40
Query: 322 FHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVN 381
+T + C D DC+ C ++ C C G+ L +NG C+
Sbjct: 41 --------FTRKLCSLDNGDCDQF-------CHEEQASVVCSCARGYT--LADNGKACIP 83
Query: 382 TG 383
TG
Sbjct: 84 TG 85
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 118 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVV 149
PCQN G C++ +Y CTC EGF G NCE+
Sbjct: 11 PCQNQGKCKD-GLGEYTCTCLEGFEGKNCELF 41
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 51 NPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKI 86
+ C PC N G+CK+ G++ C C G+ G C++
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 40
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 682 NACKSNPCKNGGTCVNTGDLYSCICKEGF--VHALLFTRR 719
+ C+++PC+N G C + Y+C C EGF + LFTR+
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRK 44
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 605 NECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTC---TSKNGHCDRGTCKHGGTCADLGS 661
++CE +PC+N G C DG ++TC C G++GK C T K D G C C + +
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQN 60
Query: 662 SFFCHCPPDW 671
S C C +
Sbjct: 61 SVVCSCARGY 70
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 506 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHEN 565
+ C+ +PCQN G C D + + C C +G+EG+ C + CS D G ++CHE
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRK----LCSLDNGDCDQFCHEE 58
Query: 566 IN 567
N
Sbjct: 59 QN 60
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQY 261
D D+C ++PCQN G C D + Y C C + +EG NC+
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 38
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQ-CKETAGQFQCVCA 76
PCQN G C++ +Y CTC EGF G NCE+ G+ Q C E C CA
Sbjct: 9 PCQNQGKCKD-GLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCA 67
Query: 77 PGWT 80
G+T
Sbjct: 68 RGYT 71
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 39/122 (31%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVND 321
D D+C+ SPC N C + +G+Y C C G+ G NC++
Sbjct: 1 DGDQCETSPCQNQG-KCKDGLGEYTCTCLEGFEGKNCEL--------------------- 38
Query: 322 FHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVN 381
+T + C D DC+ C ++ N C C G+ L +NG C+
Sbjct: 39 --------FTRKLCSLDNGDCDQF-------CHEEQNSVVCSCARGYT--LADNGKACIP 81
Query: 382 TG 383
TG
Sbjct: 82 TG 83
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 175 DHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCS-FPRYKC--DNPPCDDI 225
D D C +PC N C + +Y C C E +EGKNC F R C DN CD
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQF 54
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 402 DINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRI 439
D + C PC N GKC DG+ + C C GF G +C +
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 38
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 118 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVV 149
PCQN G C++ +Y CTC EGF G NCE+
Sbjct: 9 PCQNQGKCKD-GLGEYTCTCLEGFEGKNCELF 39
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 567 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 600
+ C+ +PCQN G C D + + C C +G+EG+ C
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNC 36
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 51 NPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKI 86
+ C PC N G+CK+ G++ C C G+ G C++
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 38
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 682 NACKSNPCKNGGTCVNTGDLYSCICKEGF--VHALLFTRR 719
+ C+++PC+N G C + Y+C C EGF + LFTR+
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRK 42
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 605 NECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTC---TSKNGHCDRGTCKHGGTCADLGS 661
++CE +PC+N G C DG ++TC C G++GK C T K D G C C + +
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQN 62
Query: 662 SFFCHCPPDW 671
S C C +
Sbjct: 63 SVVCSCARGY 72
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 502 HENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKY 561
+++ + C+ +PCQN G C D + + C C +G+EG+ C + CS D G ++
Sbjct: 1 YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRK----LCSLDNGDCDQF 56
Query: 562 CHENIN 567
CHE N
Sbjct: 57 CHEEQN 62
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQ-CKETAGQFQCVCA 76
PCQN G C++ +Y CTC EGF G NCE+ G+ Q C E C CA
Sbjct: 11 PCQNQGKCKD-GLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCA 69
Query: 77 PGWT 80
G+T
Sbjct: 70 RGYT 73
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQ 260
D D+C ++PCQN G C D + Y C C + +EG NC+
Sbjct: 3 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 39
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 39/122 (31%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVND 321
D D+C+ SPC N C + +G+Y C C G+ G NC++
Sbjct: 3 DGDQCETSPCQNQG-KCKDGLGEYTCTCLEGFEGKNCEL--------------------- 40
Query: 322 FHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVN 381
+T + C D DC+ C ++ N C C G+ L +NG C+
Sbjct: 41 --------FTRKLCSLDNGDCDQF-------CHEEQNSVVCSCARGYT--LADNGKACIP 83
Query: 382 TG 383
TG
Sbjct: 84 TG 85
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 401 QDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRI 439
+D + C PC N GKC DG+ + C C GF G +C +
Sbjct: 2 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 40
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 175 DHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCS-FPRYKC--DNPPCDDI 225
D D C +PC N C + +Y C C E +EGKNC F R C DN CD
Sbjct: 3 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQF 56
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 563 HENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 600
+++ + C+ +PCQN G C D + + C C +G+EG+ C
Sbjct: 1 YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNC 38
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 118 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVV 149
PCQN G C++ +Y CTC EGF G NCE+
Sbjct: 11 PCQNQGKCKD-GLGEYTCTCLEGFEGKNCELF 41
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 51 NPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKI 86
+ C PC N G+CK+ G++ C C G+ G C++
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 40
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 682 NACKSNPCKNGGTCVNTGDLYSCICKEGF--VHALLFTRR 719
+ C+++PC+N G C + Y+C C EGF + LFTR+
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRK 44
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 18/76 (23%)
Query: 605 NECEPNPCKNNGTCIDGHADFTCLCKNGWKG--------KTCTSKNGHCDRG-------- 648
++CE +PC+N G C DG ++TC C G++G K C+ NG CD+
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 62
Query: 649 --TCKHGGTCADLGSS 662
+C G T AD G +
Sbjct: 63 VCSCARGYTLADNGKA 78
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 506 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHEN 565
+ C+ +PCQN G C D + + C C +G+EG+ C + CS D G ++CHE
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRK----LCSLDNGDCDQFCHEE 58
Query: 566 IN 567
N
Sbjct: 59 QN 60
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 59/162 (36%), Gaps = 47/162 (29%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVND 321
D D+C+ SPC N C + +G+Y C C G+ G NC++
Sbjct: 1 DGDQCETSPCQNQG-KCKDGLGEYTCTCLEGFEGKNCEL--------------------- 38
Query: 322 FHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVN 381
+T + C D DC+ C ++ N C C G+ L +NG C+
Sbjct: 39 --------FTRKLCSLDNGDCDQF-------CHEEQNSVVCSCARGYT--LADNGKACIP 81
Query: 382 TGDLYSCICKEGFEGPDCGQDINDCSPQPCYNGGKCVDGVNW 423
TG Y C G + Q + G+ D + W
Sbjct: 82 TGP-YPC-------GKQTLERRKRSVAQATSSSGEAPDSITW 115
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQY 261
D D+C ++PCQN G C D + Y C C + +EG NC+
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 38
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQ-CKETAGQFQCVCA 76
PCQN G C++ +Y CTC EGF G NCE+ G+ Q C E C CA
Sbjct: 9 PCQNQGKCKD-GLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCA 67
Query: 77 PGWT 80
G+T
Sbjct: 68 RGYT 71
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 402 DINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRI 439
D + C PC N GKC DG+ + C C GF G +C +
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 38
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 175 DHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCS-FPRYKC--DNPPCDDI 225
D D C +PC N C + +Y C C E +EGKNC F R C DN CD
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQF 54
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 118 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVV 149
PCQN G C++ +Y CTC EGF G NCE+
Sbjct: 9 PCQNQGKCKD-GLGEYTCTCLEGFEGKNCELF 39
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 567 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 600
+ C+ +PCQN G C D + + C C +G+EG+ C
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNC 36
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 53 CMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKI 86
C PC N G+CK+ G++ C C G+ G C++
Sbjct: 5 CETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 38
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 682 NACKSNPCKNGGTCVNTGDLYSCICKEGFVHA--LLFTRR 719
+ C+++PC+N G C + Y+C C EGF LFTR+
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRK 42
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 605 NECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTC---TSKNGHCDRGTCKHGGTCADLGS 661
++CE +PC+N G C DG ++TC C G++GK C T K D G C C + +
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQN 61
Query: 662 SFFCHCPPDW 671
S C C +
Sbjct: 62 SVVCSCARGY 71
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 506 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHEN 565
+ C+ +PCQN G C D + + C C +G+EG+ C + CS D G ++CHE
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRK----LCSLDNGDCDQFCHEE 59
Query: 566 IN 567
N
Sbjct: 60 QN 61
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQY 261
D D+C ++PCQN G C D + Y C C + +EG NC+
Sbjct: 2 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 39
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 39/122 (31%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVND 321
D D+C+ SPC N C + +G+Y C C G+ G NC++
Sbjct: 2 DGDQCETSPCQNQG-KCKDGLGEYTCTCLEGFEGKNCEL--------------------- 39
Query: 322 FHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVN 381
+T + C D DC+ C ++ N C C G+ L +NG C+
Sbjct: 40 --------FTRKLCSLDNGDCDQF-------CHEEQNSVVCSCARGYT--LADNGKACIP 82
Query: 382 TG 383
TG
Sbjct: 83 TG 84
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQ-CKETAGQFQCVCA 76
PCQN G C++ +Y CTC EGF G NCE+ G+ Q C E C CA
Sbjct: 10 PCQNQGKCKD-GLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCA 68
Query: 77 PGWT 80
G+T
Sbjct: 69 RGYT 72
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 401 QDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRI 439
+D + C PC N GKC DG+ + C C GF G +C +
Sbjct: 1 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 39
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 175 DHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCS-FPRYKC--DNPPCDDI 225
D D C +PC N C + +Y C C E +EGKNC F R C DN CD
Sbjct: 2 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQF 55
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 118 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVV 149
PCQN G C++ +Y CTC EGF G NCE+
Sbjct: 10 PCQNQGKCKD-GLGEYTCTCLEGFEGKNCELF 40
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 567 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 600
+ C+ +PCQN G C D + + C C +G+EG+ C
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNC 37
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 51 NPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKI 86
+ C PC N G+CK+ G++ C C G+ G C++
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 39
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 682 NACKSNPCKNGGTCVNTGDLYSCICKEGF--VHALLFTRR 719
+ C+++PC+N G C + Y+C C EGF + LFTR+
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRK 43
>pdb|1APO|A Chain A, Three-Dimensional Structure Of The Apo Form Of The N-
Terminal Egf-Like Module Of Blood Coagulation Factor X
As Determined By Nmr Spectroscopy And Simulated Folding
Length = 42
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 22/38 (57%)
Query: 175 DHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSF 212
D D C +PCLN C + DY C C E +EGKNC F
Sbjct: 2 DGDQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCEF 39
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 605 NECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTC 638
++CE +PC N G C DG D+TC C G++GK C
Sbjct: 4 DQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNC 37
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 401 QDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRINI 441
+D + C PC N G C DG+ + C CA GF G +C +
Sbjct: 1 KDGDQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCEFST 41
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQY 261
D D+C +PC N G C D + Y C C + +EG NC++
Sbjct: 2 DGDQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCEF 39
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNI 302
D D+C+ PC+N C + +GDY C C+ G+ G NC+ +
Sbjct: 2 DGDQCEGHPCLNQGH-CKDGIGDYTCTCAEGFEGKNCEFST 41
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 338 DINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCE 374
D + CE PC+N G C D + + C C GF G+ CE
Sbjct: 2 DGDQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCE 38
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEV 48
PC N G C++ D Y CTC EGF G NCE
Sbjct: 10 PCLNQGHCKDGIGD-YTCTCAEGFEGKNCEF 39
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 118 PCQNGGTCENTAPDQYLCTCPEGFSGINCEV 148
PC N G C++ D Y CTC EGF G NCE
Sbjct: 10 PCLNQGHCKDGIGD-YTCTCAEGFEGKNCEF 39
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 506 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANS 542
+ C+ +PC N G C D + + C C +G+EG+ C S
Sbjct: 4 DQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCEFS 40
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 51 NPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKI 86
+ C PC N G CK+ G + C CA G+ G C+
Sbjct: 4 DQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCEF 39
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 567 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 600
+ C+ +PC N G C D + + C C +G+EG+ C
Sbjct: 4 DQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNC 37
>pdb|1CCF|A Chain A, How An Epidermal Growth Factor (Egf)-Like Domain Binds
Calcium-High Resolution Nmr Structure Of The Calcium
Form Of The Nh2-Terminal Egf-Like Domain In Coagulation
Factor X
Length = 42
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 21/38 (55%)
Query: 175 DHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSF 212
D D C +PCLN C DY C C E +EGKNC F
Sbjct: 2 DGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEF 39
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 605 NECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTC 638
++CE +PC N G C G D+TC C G++GK C
Sbjct: 4 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNC 37
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNIN 303
D D+C+ PC+N C +GDY C C+ G+ G NC+ +
Sbjct: 2 DGDQCEGHPCLNQGH-CKXGIGDYTCTCAEGFEGKNCEFSTR 42
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 401 QDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININ 442
+D + C PC N G C G+ + C CA GF G +C +
Sbjct: 1 KDGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFSTR 42
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQY 261
D D+C +PC N G C + Y C C + +EG NC++
Sbjct: 2 DGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEF 39
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 338 DINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCE 374
D + CE PC+N G C + + C C GF G+ CE
Sbjct: 2 DGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCE 38
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEV 48
PC N G C+ D Y CTC EGF G NCE
Sbjct: 10 PCLNQGHCKXGIGD-YTCTCAEGFEGKNCEF 39
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 118 PCQNGGTCENTAPDQYLCTCPEGFSGINCEV 148
PC N G C+ D Y CTC EGF G NCE
Sbjct: 10 PCLNQGHCKXGIGD-YTCTCAEGFEGKNCEF 39
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 51 NPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKI 86
+ C PC N G CK G + C CA G+ G C+
Sbjct: 4 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEF 39
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 506 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQ 544
+ C+ +PC N G C + + C C +G+EG+ C S +
Sbjct: 4 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFSTR 42
>pdb|1WHE|A Chain A, Coagulation Factor, Nmr, 20 Structures
pdb|1WHF|A Chain A, Coagulation Factor, Nmr, 15 Structures
Length = 86
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 21/39 (53%)
Query: 175 DHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFP 213
D D C +PCLN C DY C C E +EGKNC F
Sbjct: 46 DGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFS 84
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 605 NECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTC 638
++CE +PC N G C G D+TC C G++GK C
Sbjct: 48 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNC 81
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNIN 303
D D+C+ PC+N C +GDY C C+ G+ G NC+ +
Sbjct: 46 DGDQCEGHPCLNQG-HCKXGIGDYTCTCAEGFEGKNCEFSTR 86
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQY 261
D D+C +PC N G C + Y C C + +EG NC++
Sbjct: 46 DGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEF 83
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 401 QDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININ 442
+D + C PC N G C G+ + C CA GF G +C +
Sbjct: 45 KDGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFSTR 86
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 100 TTSLFRLLSDLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEV 148
T + D + C H PC N G C+ D Y CTC EGF G NCE
Sbjct: 37 TDXFWSKYKDGDQCEGH-PCLNQGHCKXGIGD-YTCTCAEGFEGKNCEF 83
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 338 DINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCE 374
D + CE PC+N G C + + C C GF G+ CE
Sbjct: 46 DGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCE 82
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEV 48
PC N G C+ D Y CTC EGF G NCE
Sbjct: 54 PCLNQGHCKXGIGD-YTCTCAEGFEGKNCEF 83
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 51 NPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKI 86
+ C PC N G CK G + C CA G+ G C+
Sbjct: 48 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEF 83
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 496 FSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQ 544
F KY ++ + C+ +PC N G C + + C C +G+EG+ C S +
Sbjct: 40 FWSKY--KDGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFSTR 86
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 605 NECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTC---TSKNGHCDRGTCKHGGTCADLGS 661
++CE +PC+N G C G ++TC C G++GK C T K D G C C + +
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQN 61
Query: 662 SFFCHCPPDW 671
S C C +
Sbjct: 62 SVVCSCARGY 71
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 39/122 (31%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVND 321
D D+C+ SPC N C +G+Y C C G+ G NC++
Sbjct: 2 DGDQCETSPCQNQG-KCKXGLGEYTCTCLEGFEGKNCEL--------------------- 39
Query: 322 FHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVN 381
+T + C D DC+ C ++ N C C G+ L +NG C+
Sbjct: 40 --------FTRKLCSLDNGDCDQF-------CHEEQNSVVCSCARGYT--LADNGKACIP 82
Query: 382 TG 383
TG
Sbjct: 83 TG 84
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQ-CKETAGQFQCVCA 76
PCQN G C+ +Y CTC EGF G NCE+ G+ Q C E C CA
Sbjct: 10 PCQNQGKCK-XGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCA 68
Query: 77 PGWT 80
G+T
Sbjct: 69 RGYT 72
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 506 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHEN 565
+ C+ +PCQN G C + + C C +G+EG+ C + CS D G ++CHE
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRK----LCSLDNGDCDQFCHEE 59
Query: 566 IN 567
N
Sbjct: 60 QN 61
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 175 DHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCS-FPRYKC--DNPPCDDI 225
D D C +PC N C +Y C C E +EGKNC F R C DN CD
Sbjct: 2 DGDQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQF 55
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQY 261
D D+C ++PCQN G C + Y C C + +EG NC+
Sbjct: 2 DGDQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCEL 39
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 401 QDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRI 439
+D + C PC N GKC G+ + C C GF G +C +
Sbjct: 1 KDGDQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCEL 39
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 118 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVV 149
PCQN G C+ +Y CTC EGF G NCE+
Sbjct: 10 PCQNQGKCK-XGLGEYTCTCLEGFEGKNCELF 40
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 51 NPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKI 86
+ C PC N G+CK G++ C C G+ G C++
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCEL 39
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 567 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 600
+ C+ +PCQN G C + + C C +G+EG+ C
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNC 37
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 682 NACKSNPCKNGGTCVNTGDLYSCICKEGF--VHALLFTRR 719
+ C+++PC+N G C Y+C C EGF + LFTR+
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRK 43
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin K-
Dependent Protein S
Length = 87
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 175 DHDHCNPNPCLNG-APCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPC 233
D D C+ P + G A C N D+ C C E + RY + C+DIDEC N C
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGY--------RYNLKSKSCEDIDECSENMC 53
Query: 234 QNGGTCVDLVDGYKCEC 250
CV+ GY C C
Sbjct: 54 AQ--LCVNYPGGYTCYC 68
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNINDCVGQCRH---GSTCIDL 318
D DEC P + C N+ GD+ C C G+ +N + + +C C++
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYR-YNLKSKSCEDIDECSENMCAQLCVNY 60
Query: 319 VNDFHCACLPGYTGRTCQTDINDCE 343
+ C C G G D CE
Sbjct: 61 PGGYTCYC-DGKKGFKLAQDQKSCE 84
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 30 PDQYLCTCPEGFSGINCEVVDNPCMMGP-------CGNGGQCKETAGQFQCVCAPGWTGP 82
PD Y C+C G+ G+ C +P GP C NG C G C+C+PGW G
Sbjct: 260 PDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQG---CLCSPGWQGL 316
Query: 83 TCK 85
C+
Sbjct: 317 QCE 319
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 345 SPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVNTGDLYSCICKEGFEGPDCGQDIN 404
+ C+N G C + CICP GF G+ CE G CKE G + +
Sbjct: 203 TACMNNGVCHEDTG--ECICPPGFMGRTCEKACELHTFGR----TCKERCSGQEGCKSYV 256
Query: 405 DCSPQPCYNGGKCVDGVNWFLC--ECAPGFAGPDCRIN 440
C P P G C G C C PGF GPDC++
Sbjct: 257 FCLPDP--YGCSCATGWKGLQCNEACHPGFYGPDCKLR 292
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 46/122 (37%), Gaps = 30/122 (24%)
Query: 58 CGNGGQCKETAGQFQCVCAPGWTGPTCKIK---HNFFPYLQFIPLTTSLFRLLSDLNYCG 114
C N G C E G+ C+C PG+ G TC+ H F + C
Sbjct: 205 CMNNGVCHEDTGE--CICPPGFMGRTCEKACELHTFGRTCK---------------ERCS 247
Query: 115 THEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGP-------CGNGGQCKET 167
E C++ C PD Y C+C G+ G+ C +P GP C NG C
Sbjct: 248 GQEGCKSYVFC---LPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRF 304
Query: 168 AG 169
G
Sbjct: 305 QG 306
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 19/143 (13%)
Query: 475 YLVARCVSQSGGSFKCS--CDAGFSGKYCHENINDCKHNPCQNGGTCVD--KVNSFQCIC 530
+V RC +Q G +C+ C A + CHE+ +C P G TC ++++F C
Sbjct: 184 LIVRRCEAQKWGP-ECNHLCTACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTC 242
Query: 531 RDGWEGEICANSNQ--SGGSFKCSCDAGFSGKYCHENIN------DCKHN-PCQNGGTCV 581
++ G+ S + CSC G+ G C+E + DCK C NG C
Sbjct: 243 KERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMC- 301
Query: 582 DKVNSFQ-CICRDGWEGEICANN 603
+ FQ C+C GW+G C
Sbjct: 302 ---DRFQGCLCSPGWQGLQCERE 321
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 174 VDHDHCN-PNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDEC-VSN 231
VD D C P+ C +G C NT Y C C Y C D DEC V N
Sbjct: 3 VDMDECKEPDVCKHGQ-CINTDGSYRCECPFG----------YILAGNECVDTDECSVGN 51
Query: 232 PCQNGGTCVDLVDGYKCECTQAWE 255
PC NG TC +++ G++C C + +E
Sbjct: 52 PCGNG-TCKNVIGGFECTCEEGFE 74
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 9 DLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVD-NPCMMG-PCGNGGQCKE 66
D++ C + C++G C NT Y C CP G+ E VD + C +G PCGNG CK
Sbjct: 4 DMDECKEPDVCKHG-QCINTD-GSYRCECPFGYILAGNECVDTDECSVGNPCGNG-TCKN 60
Query: 67 TAGQFQCVCAPGW 79
G F+C C G+
Sbjct: 61 VIGGFECTCEEGF 73
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 337 TDINDCESSPCVNGGECVDQVNGFRCICPVGF--AGQLCEN-----------GGTCVNTG 383
D+++C+ G+C++ +RC CP G+ AG C + GTC N
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVI 62
Query: 384 DLYSCICKEGFE 395
+ C C+EGFE
Sbjct: 63 GGFECTCEEGFE 74
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 109 DLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVD-NPCMMG-PCGNGGQCKE 166
D++ C + C++G C NT Y C CP G+ E VD + C +G PCGNG CK
Sbjct: 4 DMDECKEPDVCKHG-QCINTD-GSYRCECPFGYILAGNECVDTDECSVGNPCGNG-TCKN 60
Query: 167 TAGQFQCVDHDHCNPNPCLN 186
G F+C + P P +
Sbjct: 61 VIGGFECTCEEGFEPGPMMT 80
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 261 YDADECQKSPCVNAALGCTNLVGDYRCNCSPGW--TGHNCDVNINDC-VGQCRHGSTCID 317
D DEC K P V C N G YRC C G+ G+ C V+ ++C VG TC +
Sbjct: 3 VDMDEC-KEPDVCKHGQCINTDGSYRCECPFGYILAGNEC-VDTDECSVGNPCGNGTCKN 60
Query: 318 LVNDFHCACLPGY 330
++ F C C G+
Sbjct: 61 VIGGFECTCEEGF 73
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 486 GSFKCSCDAGF--SGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWE 535
GS++C C G+ +G C + NPC NG TC + + F+C C +G+E
Sbjct: 24 GSYRCECPFGYILAGNECVDTDECSVGNPCGNG-TCKNVIGGFECTCEEGFE 74
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 547 GSFKCSCDAGF--SGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWE 596
GS++C C G+ +G C + NPC NG TC + + F+C C +G+E
Sbjct: 24 GSYRCECPFGYILAGNECVDTDECSVGNPCGNG-TCKNVIGGFECTCEEGFE 74
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 649 TCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACK-SNPCKNGGTCVNTGDLYSCICK 707
CKHG C + S+ C CP + + C NPC NG TC N + C C+
Sbjct: 13 VCKHG-QCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNG-TCKNVIGGFECTCE 70
Query: 708 EGFVHALLFT 717
EGF + T
Sbjct: 71 EGFEPGPMMT 80
>pdb|1TPG|A Chain A, F1-G Module Pair Residues 1-91 (C83s) Of Tissue-Type
Plasminogen Activator (T-Pa) (Nmr, 298k, Ph2.95,
Representative Structure)
Length = 91
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 403 INDCSPQPCYNGGKCVDGVNW--FLCECAPGFAGPDCRININ 442
+ CS C+NGG C + + F+C+C GFAG C I+
Sbjct: 48 VKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTR 89
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 19 CQNGGTCENTAP-DQYLCTCPEGFSGINCEV 48
C NGGTC+ ++C CPEGF+G +CE+
Sbjct: 56 CFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 86
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 119 CQNGGTCENTAP-DQYLCTCPEGFSGINCEV 148
C NGGTC+ ++C CPEGF+G +CE+
Sbjct: 56 CFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 86
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 11/95 (11%)
Query: 586 SFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCTSKNGHC 645
S+Q ICRD I +++ P N C C +G + + + C
Sbjct: 1 SYQVICRDEKTQMIYQQHQSWLRPVLRSNRVE--------YCWCNSG-RAQCHSVPVKSC 51
Query: 646 DRGTCKHGGTC--ADLGSSFFCHCPPDWEGTSCHI 678
C +GGTC A S F C CP + G SC I
Sbjct: 52 SEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 86
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 339 INDCESSPCVNGGECVDQV--NGFRCICPVGFAGQLCE 374
+ C C NGG C + + F C CP GFAG+ CE
Sbjct: 48 VKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCE 85
>pdb|4BDW|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii In Complex With Holmium
pdb|4BDX|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii
Length = 85
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 47 EVVDNPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKI 86
+ C PC +GG+C E G C C G+TGP C +
Sbjct: 42 RLASQACRTNPCLHGGRCLEVEGHRLCHCPVGYTGPFCDV 81
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Query: 342 CESSPCVNGGECVDQVNGFR-CICPVGFAGQLCE 374
C ++PC++GG C++ V G R C CPVG+ G C+
Sbjct: 48 CRTNPCLHGGRCLE-VEGHRLCHCPVGYTGPFCD 80
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 190 CFNTQADYYCHCTEDW-EGKNCSFPRYKCDNPP--CDDI--DECVSNPCQNGGTCVDLVD 244
CF Q + H E W + + R +C P C + C +NPC +GG C+++
Sbjct: 5 CFEPQLLRFFHKNEIWYRTEQAAVARCQCKGPDAHCQRLASQACRTNPCLHGGRCLEVEG 64
Query: 245 GYKCECTQAWEGSNCQYD 262
C C + G C D
Sbjct: 65 HRLCHCPVGYTGPFCDVD 82
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 406 CSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRIN 440
C PC +GG+C++ LC C G+ GP C ++
Sbjct: 48 CRTNPCLHGGRCLEVEGHRLCHCPVGYTGPFCDVD 82
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 163 QCKETAGQFQCVDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNC 210
QCK Q + C NPCL+G C + CHC + G C
Sbjct: 32 QCKGPDAHCQRLASQACRTNPCLHGGRCLEVEGHRLCHCPVGYTGPFC 79
>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 463
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 588 QCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTC 638
+C C GWEG+ C K CEP C++ G C+ + CLCK G+ G C
Sbjct: 409 KCCCSPGWEGDFCRTAK--CEP-ACRHGGVCVRPNK---CLCKKGYLGPQC 453
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 286 RCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQ 336
+C CSPGW G C C CRHG C V C C GY G C+
Sbjct: 409 KCCCSPGWEGDFC--RTAKCEPACRHGGVC---VRPNKCLCKKGYLGPQCE 454
>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 457
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 588 QCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTC 638
+C C GWEG+ C K CEP C++ G C+ + CLCK G+ G C
Sbjct: 409 KCCCSPGWEGDFCRTAK--CEP-ACRHGGVCVRPNK---CLCKKGYLGPQC 453
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 286 RCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQ 336
+C CSPGW G C C CRHG C V C C GY G C+
Sbjct: 409 KCCCSPGWEGDFC--RTAKCEPACRHGGVC---VRPNKCLCKKGYLGPQCE 454
>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
Length = 458
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 588 QCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTC 638
+C C GWEG+ C K CEP C++ G C+ + CLCK G+ G C
Sbjct: 409 KCCCSPGWEGDFCRTAK--CEP-ACRHGGVCVRPNK---CLCKKGYLGPQC 453
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 286 RCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQ 336
+C CSPGW G C C CRHG C V C C GY G C+
Sbjct: 409 KCCCSPGWEGDFC--RTAKCEPACRHGGVC---VRPNKCLCKKGYLGPQCE 454
>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
Length = 481
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 588 QCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTC 638
+C C GWEG+ C K CEP C++ G C+ + CLCK G+ G C
Sbjct: 430 KCCCSPGWEGDFCRTAK--CEP-ACRHGGVCVRPNK---CLCKKGYLGPQC 474
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 286 RCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQ 336
+C CSPGW G C C CRHG C V C C GY G C+
Sbjct: 430 KCCCSPGWEGDFC--RTAKCEPACRHGGVC---VRPNKCLCKKGYLGPQCE 475
>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
pdb|3HO4|B Chain B, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
Length = 481
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 588 QCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTC 638
+C C GWEG+ C K CEP C++ G C+ + CLCK G+ G C
Sbjct: 430 KCCCSPGWEGDFCRTAK--CEP-ACRHGGVCVRPNK---CLCKKGYLGPQC 474
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 286 RCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQ 336
+C CSPGW G C C CRHG C V C C GY G C+
Sbjct: 430 KCCCSPGWEGDFC--RTAKCEPACRHGGVC---VRPNKCLCKKGYLGPQCE 475
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 66/159 (41%), Gaps = 36/159 (22%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALG-CTNLV 282
DIDEC S+PC N G C + + CEC+ S D K+ C+ G C V
Sbjct: 3 DIDECESSPCIN-GVCKNSPGSFICECS-----SESTLDP---TKTICIETIKGTCWQTV 53
Query: 283 GDYRCNCSPGWTGHNCDVNINDCV--GQC------RHGSTCIDLVNDFHCACLPGYT--- 331
D R C++NIN QC GS C D C GY+
Sbjct: 54 IDGR-----------CEININGATLKSQCCSSLGAAWGSPCTLCQVDPICG--KGYSRIK 100
Query: 332 GRTCQTDINDCESSPCV-NGGECVDQVNGFRCICPVGFA 369
G C+ DI++CE P V G CV+ F+C CP G
Sbjct: 101 GTQCE-DIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMT 138
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 21/157 (13%)
Query: 402 DINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININECASNPCGYGKEILTVQSR 461
DI++C PC NG C + F+CEC+ + E C + R
Sbjct: 3 DIDECESSPCING-VCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQ----TVIDGR 57
Query: 462 SRSPAYLCVSNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVD 521
N A L ++C S G ++ C C + + K C++ +D
Sbjct: 58 CEINI-----NGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCED----ID 108
Query: 522 KVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFS 558
+ F +C++G +C N+ GSFKC C +G +
Sbjct: 109 ECEVFPGVCKNG----LCVNTR---GSFKCQCPSGMT 138
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Query: 397 PDCGQDIND-CSPQPCYNGGKCVDGVNWFLCECA-PGFAGPDCRININECASNPCGYGKE 454
P C ++ C PC N G C DG N ++C+C+ G+ G C + + + K
Sbjct: 387 PSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKI 446
Query: 455 ILTV--QSRSRSPAYLCVSNPAY--LVARCVSQSGGSFKCSCDAG 495
L V + + + S AY L+A S + + DAG
Sbjct: 447 QLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAG 491
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 607 CEPNPCKNNGTCIDGHADFTCLCK-NGWKGKTC 638
C NPCKNNG C DG + C C G+ G++C
Sbjct: 397 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSC 429
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 329 GYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPV-GFAGQLCENGGTC 379
G R C+ C+ C N G C+ Q +GF C C + F+G LC + GT
Sbjct: 791 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTT 842
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 228 CVSNPCQNGGTCVDLVDGYKCECT-QAWEGSNCQYDA 263
C+SNPC+N G C D + Y C+C+ + G +C+ +A
Sbjct: 397 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREA 433
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Query: 397 PDCGQDIND-CSPQPCYNGGKCVDGVNWFLCECA-PGFAGPDCRININECASNPCGYGKE 454
P C ++ C PC N G C DG N ++C+C+ G+ G C + + + K
Sbjct: 612 PSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKI 671
Query: 455 ILTV--QSRSRSPAYLCVSNPAY--LVARCVSQSGGSFKCSCDAG 495
L V + + + S AY L+A S + + DAG
Sbjct: 672 QLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAG 716
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 607 CEPNPCKNNGTCIDGHADFTCLCK-NGWKGKTC 638
C NPCKNNG C DG + C C G+ G++C
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSC 654
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 329 GYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPV-GFAGQLCENGGTC 379
G R C+ C+ C N G C+ Q +GF C C + F+G LC + GT
Sbjct: 1016 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTT 1067
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 228 CVSNPCQNGGTCVDLVDGYKCECT-QAWEGSNCQYDA 263
C+SNPC+N G C D + Y C+C+ + G +C+ +A
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREA 658
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Query: 397 PDCGQDIND-CSPQPCYNGGKCVDGVNWFLCECA-PGFAGPDCRININECASNPCGYGKE 454
P C ++ C PC N G C DG N ++C+C+ G+ G C + + + K
Sbjct: 612 PSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKI 671
Query: 455 ILTV--QSRSRSPAYLCVSNPAY--LVARCVSQSGGSFKCSCDAG 495
L V + + + S AY L+A S + + DAG
Sbjct: 672 QLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAG 716
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 607 CEPNPCKNNGTCIDGHADFTCLCK-NGWKGKTC 638
C NPCKNNG C DG + C C G+ G++C
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSC 654
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 329 GYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPV-GFAGQLCENGGTC 379
G R C+ C+ C N G C+ Q +GF C C + F+G LC + GT
Sbjct: 1007 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTT 1058
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 228 CVSNPCQNGGTCVDLVDGYKCECT-QAWEGSNCQYDA 263
C+SNPC+N G C D + Y C+C+ + G +C+ +A
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREA 658
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 222 CDDIDECVS---NPCQNGGTCVDLVDGYKCECTQAWE-----------GSNCQYDADECQ 267
CDDI+EC + C C + Y C C+ +E N D DEC
Sbjct: 41 CDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECS 100
Query: 268 KSPCV-NAALGCTNLVGDYRCNCSPGW 293
+++ C N VG Y C C PGW
Sbjct: 101 SGQHQCDSSTVCFNTVGSYSCRCRPGW 127
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 44/121 (36%), Gaps = 20/121 (16%)
Query: 93 YLQFIPLTTSLFRLLSDLNYCGTHEP--CQNGGTCENTAPDQYLCTCPEGFSGINCEVVD 150
+ F + T+ D+N C T C C NT Y C C G+ ++
Sbjct: 27 FSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTE-GSYDCVCSPGYEPVS----- 80
Query: 151 NPCMMGPCGNGGQCKETAGQFQCVDHDHCNP--NPCLNGAPCFNTQADYYCHCTEDWEGK 208
G + + + C D D C+ + C + CFNT Y C C W+ +
Sbjct: 81 ----------GAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPR 130
Query: 209 N 209
+
Sbjct: 131 H 131
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 14/70 (20%)
Query: 278 CTNLVGDYRCNCSPGWT-----------GHNCDVNINDCVG---QCRHGSTCIDLVNDFH 323
C N G Y C CSPG+ N ++++C QC + C + V +
Sbjct: 61 CWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYS 120
Query: 324 CACLPGYTGR 333
C C PG+ R
Sbjct: 121 CRCRPGWKPR 130
>pdb|1G1Q|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1R|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1S|A Chain A, P-selectin Lectin/egf Domains Complexed With Psgl-1
Peptide
pdb|1G1S|B Chain B, P-selectin Lectin/egf Domains Complexed With Psgl-1
Peptide
Length = 162
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 53 CMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCK 85
C C G+C ET G + C C PG+ GP C+
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECE 154
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 406 CSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCR 438
C C G+C++ + + C C PGF GP+C
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECE 154
>pdb|3ZYJ|B Chain B, Netring1 In Complex With Ngl1
pdb|3ZYJ|D Chain D, Netring1 In Complex With Ngl1
Length = 426
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 11/52 (21%)
Query: 19 CQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQ 70
CQNGGTC N C CP ++GI CE + C G C +GQ
Sbjct: 373 CQNGGTCHNNV----RCLCPAAYTGILCEKLR-------CEEAGSCGSDSGQ 413
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 11/52 (21%)
Query: 119 CQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQ 170
CQNGGTC N C CP ++GI CE + C G C +GQ
Sbjct: 373 CQNGGTCHNNV----RCLCPAAYTGILCEKLR-------CEEAGSCGSDSGQ 413
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 325 ACLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCEN 375
AC+P + + T++ D E C NGG C N RC+CP + G LCE
Sbjct: 353 ACIPSIS--SIGTNVCDNELLHCQNGGTCH---NNVRCLCPAAYTGILCEK 398
>pdb|1FSB|A Chain A, Structure Of The Egf Domain Of P-Selectin, Nmr, 19
Structures
Length = 40
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 58 CGNGGQCKETAGQFQCVCAPGWTGPTCK 85
C G+C ET G + C C PG+ GP C+
Sbjct: 9 CSKQGECLETIGNYTCSCYPGFYGPECE 36
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 405 DCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCR 438
C C G+C++ + + C C PGF GP+C
Sbjct: 3 SCQDMSCSKQGECLETIGNYTCSCYPGFYGPECE 36
>pdb|1ESL|A Chain A, Insight Into E-Selectin(Slash)ligand Interaction From The
Crystal Structure And Mutagenesis Of The Lec(Slash)egf
Domains
Length = 162
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 342 CESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTC 379
C ++ C GECV+ +N + C C GF+G CE C
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIVNC 159
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 406 CSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININ 442
C+ C G+CV+ +N + C+C PGF+G C +N
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIVN 158
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 311 HGSTCIDLVNDFHCACLPGYTGRTCQTDIN 340
HG C++ +N++ C C PG++G C+ +N
Sbjct: 130 HGE-CVETINNYTCKCDPGFSGLKCEQIVN 158
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 228 CVSNPCQNGGTCVDL-VDGYKCECTQA-WEGSNC 259
C SNPCQN G C+ D YKC+CT+ + G NC
Sbjct: 27 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 60
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPE-GFSGINC 46
PCQN G C +T DQY C C GF G NC
Sbjct: 31 PCQNRGECMSTGFDQYKCDCTRTGFYGENC 60
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 118 PCQNGGTCENTAPDQYLCTCPE-GFSGINC 146
PCQN G C +T DQY C C GF G NC
Sbjct: 31 PCQNRGECMSTGFDQYKCDCTRTGFYGENC 60
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
Length = 604
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 228 CVSNPCQNGGTCVDL-VDGYKCECTQA-WEGSNC 259
C SNPCQN G C+ D YKC+CT+ + G NC
Sbjct: 21 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 54
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPE-GFSGINC 46
PCQN G C +T DQY C C GF G NC
Sbjct: 25 PCQNRGECMSTGFDQYKCDCTRTGFYGENC 54
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 118 PCQNGGTCENTAPDQYLCTCPE-GFSGINC 146
PCQN G C +T DQY C C GF G NC
Sbjct: 25 PCQNRGECMSTGFDQYKCDCTRTGFYGENC 54
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 228 CVSNPCQNGGTCVDL-VDGYKCECTQA-WEGSNC 259
C SNPCQN G C+ D YKC+CT+ + G NC
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPE-GFSGINC 46
PCQN G C +T DQY C C GF G NC
Sbjct: 13 PCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 118 PCQNGGTCENTAPDQYLCTCPE-GFSGINC 146
PCQN G C +T DQY C C GF G NC
Sbjct: 13 PCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 228 CVSNPCQNGGTCVDL-VDGYKCECTQA-WEGSNC 259
C SNPCQN G C+ D YKC+CT+ + G NC
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPE-GFSGINC 46
PCQN G C +T DQY C C GF G NC
Sbjct: 12 PCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 118 PCQNGGTCENTAPDQYLCTCPE-GFSGINC 146
PCQN G C +T DQY C C GF G NC
Sbjct: 12 PCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 225 IDECVSNPC--QNGG---TCVDLVDGYKCECTQAWEGSNCQY--DADECQKSPCVNAALG 277
I EC +N C NGG C DL GY+C C ++ + D DECQ P + L
Sbjct: 289 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQL- 346
Query: 278 CTNLVGDYRCNCSPGW 293
C NL G Y+C C G+
Sbjct: 347 CVNLEGGYKCQCEEGF 362
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 18/75 (24%)
Query: 339 INDCESSPCV--NGG---ECVDQVNGFRCICPVGF---AGQLCEN----------GGTCV 380
I +C ++ C+ NGG C D G+ C+CP GF A + CE+ CV
Sbjct: 289 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCV 348
Query: 381 NTGDLYSCICKEGFE 395
N Y C C+EGF+
Sbjct: 349 NLEGGYKCQCEEGFQ 363
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
Length = 552
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 228 CVSNPCQNGGTCVDL-VDGYKCECTQA-WEGSNC 259
C SNPCQN G C+ D YKC+CT+ + G NC
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPE-GFSGINC 46
PCQN G C +T DQY C C GF G NC
Sbjct: 8 PCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 118 PCQNGGTCENTAPDQYLCTCPE-GFSGINC 146
PCQN G C +T DQY C C GF G NC
Sbjct: 8 PCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 230 SNPCQNGGTCVDL-VDGYKCECTQA-WEGSNC 259
SNPCQN G C+ D YKC+CT+ + G NC
Sbjct: 12 SNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 43
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPE-GFSGINC 46
PCQN G C +T DQY C C GF G NC
Sbjct: 14 PCQNRGECMSTGFDQYKCDCTRTGFYGENC 43
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 118 PCQNGGTCENTAPDQYLCTCPE-GFSGINC 146
PCQN G C +T DQY C C GF G NC
Sbjct: 14 PCQNRGECMSTGFDQYKCDCTRTGFYGENC 43
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 228 CVSNPCQNGGTCVDL-VDGYKCECTQA-WEGSNC 259
C SNPCQN G C+ D YKC+CT+ + G NC
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPE-GFSGINC 46
PCQN G C +T DQY C C GF G NC
Sbjct: 13 PCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 118 PCQNGGTCENTAPDQYLCTCPE-GFSGINC 146
PCQN G C +T DQY C C GF G NC
Sbjct: 13 PCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 228 CVSNPCQNGGTCVDL-VDGYKCECTQA-WEGSNC 259
C SNPCQN G C+ D YKC+CT+ + G NC
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPE-GFSGINC 46
PCQN G C +T DQY C C GF G NC
Sbjct: 8 PCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 118 PCQNGGTCENTAPDQYLCTCPE-GFSGINC 146
PCQN G C +T DQY C C GF G NC
Sbjct: 8 PCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 230 SNPCQNGGTCVDL-VDGYKCECTQA-WEGSNC 259
SNPCQN G C+ D YKC+CT+ + G NC
Sbjct: 10 SNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPE-GFSGINC 46
PCQN G C +T DQY C C GF G NC
Sbjct: 12 PCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 118 PCQNGGTCENTAPDQYLCTCPE-GFSGINC 146
PCQN G C +T DQY C C GF G NC
Sbjct: 12 PCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
Length = 587
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 228 CVSNPCQNGGTCVDL-VDGYKCECTQA-WEGSNC 259
C SNPCQN G C+ D YKC+CT+ + G NC
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPE-GFSGINC 46
PCQN G C +T DQY C C GF G NC
Sbjct: 8 PCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 118 PCQNGGTCENTAPDQYLCTCPE-GFSGINC 146
PCQN G C +T DQY C C GF G NC
Sbjct: 8 PCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 228 CVSNPCQNGGTCVDL-VDGYKCECTQA-WEGSNC 259
C SNPCQN G C+ D YKC+CT+ + G NC
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPE-GFSGINC 46
PCQN G C +T DQY C C GF G NC
Sbjct: 8 PCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 118 PCQNGGTCENTAPDQYLCTCPE-GFSGINC 146
PCQN G C +T DQY C C GF G NC
Sbjct: 8 PCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|1G1T|A Chain A, Crystal Structure Of E-Selectin LectinEGF DOMAINS
Complexed With Slex
Length = 157
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 342 CESSPCVNGGECVDQVNGFRCICPVGFAGQLCE 374
C ++ C GECV+ +N + C C GF+G CE
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 406 CSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCR 438
C+ C G+CV+ +N + C+C PGF+G C
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 228 CVSNPCQNGGTCVDL-VDGYKCECTQA-WEGSNC 259
C SNPCQN G C+ D YKC+CT+ + G NC
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPE-GFSGINC 46
PCQN G C +T DQY C C GF G NC
Sbjct: 8 PCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 118 PCQNGGTCENTAPDQYLCTCPE-GFSGINC 146
PCQN G C +T DQY C C GF G NC
Sbjct: 8 PCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 225 IDECVSNPC--QNGG---TCVDLVDGYKCECTQAWEGSNCQY--DADECQKSPCVNAALG 277
I EC +N C NGG C DL GY+C C ++ + D DECQ P + L
Sbjct: 307 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQL- 364
Query: 278 CTNLVGDYRCNCSPGW 293
C NL G Y+C C G+
Sbjct: 365 CVNLEGGYKCQCEEGF 380
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 18/75 (24%)
Query: 339 INDCESSPCV--NGG---ECVDQVNGFRCICPVGF---AGQLCEN----------GGTCV 380
I +C ++ C+ NGG C D G+ C+CP GF A + CE+ CV
Sbjct: 307 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCV 366
Query: 381 NTGDLYSCICKEGFE 395
N Y C C+EGF+
Sbjct: 367 NLEGGYKCQCEEGFQ 381
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 225 IDECVSNPC--QNGG---TCVDLVDGYKCECTQAWEGSNCQY--DADECQKSPCVNAALG 277
I EC +N C NGG C DL GY+C C ++ + D DECQ P + L
Sbjct: 35 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQL- 92
Query: 278 CTNLVGDYRCNCSPGW 293
C NL G Y+C C G+
Sbjct: 93 CVNLEGGYKCQCEEGF 108
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 18/75 (24%)
Query: 339 INDCESSPCV--NGG---ECVDQVNGFRCICPVGF---AGQLCEN----------GGTCV 380
I +C ++ C+ NGG C D G+ C+CP GF A + CE+ CV
Sbjct: 35 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCV 94
Query: 381 NTGDLYSCICKEGFE 395
N Y C C+EGF+
Sbjct: 95 NLEGGYKCQCEEGFQ 109
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 61/157 (38%), Gaps = 30/157 (19%)
Query: 402 DINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININECASNPCGYGKEILTVQSR 461
D+N+C G CV+ ++C+C P F R+ + S C L ++ R
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNC-----YLDIRPR 56
Query: 462 SRSPAYLCVSNPAYLVAR-----------------CVSQSGGSFKCSCDAGFSGK----- 499
+ C + V++ C + + +K C G +
Sbjct: 57 GDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPIT 116
Query: 500 YCHENINDCKHNP--CQNGGTCVDKVNSFQCICRDGW 534
E+I++C+ P CQ GG C++ SFQC C G+
Sbjct: 117 VILEDIDECQELPGLCQ-GGKCINTFGSFQCRCPTGY 152
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 537 EICANSNQSGGSFKCSCDAGFSG---KYCHENINDCKHNP--CQNGGTCVDKVNSFQCIC 591
E+C N S C GF E+I++C+ P CQ GG C++ SFQC C
Sbjct: 90 EMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQ-GGKCINTFGSFQCRC 148
Query: 592 RDGW 595
G+
Sbjct: 149 PTGY 152
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 12/74 (16%)
Query: 226 DECVSNPCQNGG---TCVDLVDGYKCECTQAWE---GSNCQYDADECQKSPCVNAALGCT 279
+EC+ N NGG C DL GY+C C ++ C+ D DECQ P + L C
Sbjct: 30 NECLDN---NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQ-DPDTCSQL-CV 83
Query: 280 NLVGDYRCNCSPGW 293
NL G Y+C C G+
Sbjct: 84 NLEGGYKCQCEEGF 97
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 12/74 (16%)
Query: 226 DECVSNPCQNGG---TCVDLVDGYKCECTQAWE---GSNCQYDADECQKSPCVNAALGCT 279
+EC+ N NGG C DL GY+C C ++ C+ D DECQ P + L C
Sbjct: 30 NECLDN---NGGCSYVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQ-DPDTCSQL-CV 83
Query: 280 NLVGDYRCNCSPGW 293
NL G Y+C C G+
Sbjct: 84 NLEGGYKCQCEEGF 97
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 61/157 (38%), Gaps = 30/157 (19%)
Query: 402 DINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININECASNPCGYGKEILTVQSR 461
D+N+C G CV+ ++C+C P F R+ + S C L ++ R
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNC-----YLDIRPR 56
Query: 462 SRSPAYLCVSNPAYLVAR-----------------CVSQSGGSFKCSCDAGFSGK----- 499
+ C + V++ C + + +K C G +
Sbjct: 57 GDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEXCPAVNTSEYKILCPGGEGFRPNPIT 116
Query: 500 YCHENINDCKHNP--CQNGGTCVDKVNSFQCICRDGW 534
E+I++C+ P CQ GG C++ SFQC C G+
Sbjct: 117 VILEDIDECQELPGLCQ-GGKCINTFGSFQCRCPTGY 152
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 12/74 (16%)
Query: 226 DECVSNPCQNGG---TCVDLVDGYKCECTQAWE---GSNCQYDADECQKSPCVNAALGCT 279
+EC+ N NGG C DL GY+C C ++ C+ D DECQ P + L C
Sbjct: 6 NECLDN---NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQ-DPDTCSQL-CV 59
Query: 280 NLVGDYRCNCSPGW 293
NL G Y+C C G+
Sbjct: 60 NLEGGYKCQCEEGF 73
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 12/74 (16%)
Query: 226 DECVSNPCQNGG---TCVDLVDGYKCECTQAWE---GSNCQYDADECQKSPCVNAALGCT 279
+EC+ N NGG C DL GY+C C ++ C+ D DECQ P + L C
Sbjct: 3 NECLDN---NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQ-DPDTCSQL-CV 56
Query: 280 NLVGDYRCNCSPGW 293
NL G Y+C C G+
Sbjct: 57 NLEGGYKCQCEEGF 70
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 12/74 (16%)
Query: 226 DECVSNPCQNGG---TCVDLVDGYKCECTQAWE---GSNCQYDADECQKSPCVNAALGCT 279
+EC+ N NGG C DL GY+C C ++ C+ D DECQ P + L C
Sbjct: 3 NECLDN---NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQ-DPDTCSQL-CV 56
Query: 280 NLVGDYRCNCSPGW 293
NL G Y+C C G+
Sbjct: 57 NLEGGYKCQCEEGF 70
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 12/74 (16%)
Query: 226 DECVSNPCQNGG---TCVDLVDGYKCECTQAWE---GSNCQYDADECQKSPCVNAALGCT 279
+EC+ N NGG C DL GY+C C ++ C+ D DECQ P + L C
Sbjct: 6 NECLDN---NGGCSYVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQ-DPDTCSQL-CV 59
Query: 280 NLVGDYRCNCSPGW 293
NL G Y+C C G+
Sbjct: 60 NLEGGYKCQCEEGF 73
>pdb|3CFW|A Chain A, L-selectin Lectin And Egf Domains
Length = 164
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 406 CSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRI 439
C P C G+CV+ +N + C C G+ GP C+
Sbjct: 122 CQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQF 155
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 342 CESSPCVNGGECVDQVNGFRCICPVGFAGQLCE 374
C+ C GECV+ +N + C C VG+ G C+
Sbjct: 122 CQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQ 154
>pdb|1Z27|A Chain A, Crystal Structure Of Native Pvs25, An Ookinete Protein
From Plasmodium Vivax.
pdb|1Z3G|A Chain A, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
pdb|1Z3G|B Chain B, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
Length = 186
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 26/100 (26%)
Query: 319 VNDFHCACLPGYTGR--TCQTDINDCESSPCVNGGECV----DQVNGFRCICPVGFA--- 369
VN + C C+ GYT + TC D+ C+ C GEC+ ++ C C +G
Sbjct: 71 VNMYKCGCIEGYTLKEDTCVLDV--CQYKNCGESGECIVEYLSEIQSAGCSCAIGKVPNP 128
Query: 370 --GQLCENGG-------------TCVNTGDLYSCICKEGF 394
+ C G C N +Y C C EGF
Sbjct: 129 EDEKKCTKTGETACQLKCNTDNEVCKNVEGVYKCQCMEGF 168
>pdb|2E26|A Chain A, Crystal Structure Of Two Repeat Fragment Of Reelin
Length = 725
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 409 QPCYNGGKCVDGVNWFLCECAPGFAGPDCRIN 440
+ CY G C++G C C PG++GP C+I+
Sbjct: 190 EMCYGHGSCINGTK---CICDPGYSGPTCKIS 218
>pdb|3A7Q|A Chain A, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 725
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 409 QPCYNGGKCVDGVNWFLCECAPGFAGPDCRIN 440
+ CY G C++G C C PG++GP C+I+
Sbjct: 190 EMCYGHGSCINGTK---CICDPGYSGPTCKIS 218
>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6
Length = 410
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 329 GYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPV-GFAGQLCENGGTC 379
G R C+ C+ C N G C+ Q +GF C C + F+G LC + GT
Sbjct: 175 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTT 226
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 226 DECVSNPCQNGG---TCVDLVDGYKCECTQAWEGSNCQY--DADECQKSPCVNAALGCTN 280
+EC+ N NGG C DL GY+C C ++ + D DECQ P + L C N
Sbjct: 1 NECLDN---NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQL-CVN 55
Query: 281 LVGDYRCNCSPGW 293
L G Y+C C G+
Sbjct: 56 LEGGYKCQCEEGF 68
>pdb|1HRE|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
pdb|1HRF|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
Length = 67
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 411 CYNGGKC-----VDGVNWFLCECAPGFAGPDCRINI 441
C NGG+C + + +LC+C PGF G C N+
Sbjct: 16 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.513
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,780,167
Number of Sequences: 62578
Number of extensions: 1311736
Number of successful extensions: 5066
Number of sequences better than 100.0: 185
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 2441
Number of HSP's gapped (non-prelim): 1927
length of query: 721
length of database: 14,973,337
effective HSP length: 106
effective length of query: 615
effective length of database: 8,340,069
effective search space: 5129142435
effective search space used: 5129142435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)