RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17084
(721 letters)
>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a
large number of membrane-bound and extracellular (mostly
animal) proteins. Many of these proteins require calcium
for their biological function and calcium-binding sites
have been found to be located at the N-terminus of
particular EGF-like domains; calcium-binding may be
crucial for numerous protein-protein interactions. Six
conserved core cysteines form three disulfide bridges as
in non calcium-binding EGF domains, whose structures are
very similar. EGF_CA can be found in tandem repeat
arrangements.
Length = 38
Score = 44.5 bits (106), Expect = 2e-06
Identities = 23/38 (60%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 224 DIDECVS-NPCQNGGTCVDLVDGYKCECTQAWEGSNCQ 260
DIDEC S NPCQNGGTCV+ V Y+C C + G NC+
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38
Score = 43.4 bits (103), Expect = 5e-06
Identities = 20/38 (52%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 338 DINDCES-SPCVNGGECVDQVNGFRCICPVGFAGQLCE 374
DI++C S +PC NGG CV+ V +RC CP G+ G+ CE
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38
Score = 42.6 bits (101), Expect = 8e-06
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 504 NINDCK-HNPCQNGGTCVDKVNSFQCICRDGWEGEIC 539
+I++C NPCQNGGTCV+ V S++C C G+ G C
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC 37
Score = 42.6 bits (101), Expect = 8e-06
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 565 NINDCK-HNPCQNGGTCVDKVNSFQCICRDGWEGEIC 600
+I++C NPCQNGGTCV+ V S++C C G+ G C
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC 37
Score = 41.1 bits (97), Expect = 4e-05
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 9 DLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCE 47
D++ C + PCQNGGTC NT Y C+CP G++G NCE
Sbjct: 1 DIDECASGNPCQNGGTCVNT-VGSYRCSCPPGYTGRNCE 38
Score = 41.1 bits (97), Expect = 4e-05
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 109 DLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCE 147
D++ C + PCQNGGTC NT Y C+CP G++G NCE
Sbjct: 1 DIDECASGNPCQNGGTCVNT-VGSYRCSCPPGYTGRNCE 38
Score = 40.3 bits (95), Expect = 5e-05
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 402 DINDC-SPQPCYNGGKCVDGVNWFLCECAPGFAGPDC 437
DI++C S PC NGG CV+ V + C C PG+ G +C
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC 37
Score = 39.2 bits (92), Expect = 1e-04
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 301 NINDCV--GQCRHGSTCIDLVNDFHCACLPGYTGRTCQ 336
+I++C C++G TC++ V + C+C PGYTGR C+
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38
Score = 39.2 bits (92), Expect = 1e-04
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 603 NKNECE-PNPCKNNGTCIDGHADFTCLCKNGWKGKTCT 639
+ +EC NPC+N GTC++ + C C G+ G+ C
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38
Score = 37.2 bits (87), Expect = 8e-04
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 54 MMGPCGNGGQCKETAGQFQCVCAPGWTGPTCK 85
PC NGG C T G ++C C PG+TG C+
Sbjct: 7 SGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38
Score = 34.9 bits (81), Expect = 0.005
Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 262 DADECQ-KSPCVNAALGCTNLVGDYRCNCSPGWTGHNC 298
D DEC +PC N C N VG YRC+C PG+TG NC
Sbjct: 1 DIDECASGNPCQNGGT-CVNTVGSYRCSCPPGYTGRNC 37
Score = 33.4 bits (77), Expect = 0.018
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 175 DHDHC-NPNPCLNGAPCFNTQADYYCHCTEDWEGKNC 210
D D C + NPC NG C NT Y C C + G+NC
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC 37
Score = 33.0 bits (76), Expect = 0.028
Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 682 NACKS-NPCKNGGTCVNTGDLYSCICKEGF 710
+ C S NPC+NGGTCVNT Y C C G+
Sbjct: 3 DECASGNPCQNGGTCVNTVGSYRCSCPPGY 32
Score = 30.3 bits (69), Expect = 0.20
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 646 DRGTCKHGGTCADLGSSFFCHCPPDWEGTSC 676
C++GGTC + S+ C CPP + G +C
Sbjct: 7 SGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC 37
>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain.
Length = 39
Score = 39.9 bits (94), Expect = 9e-05
Identities = 24/39 (61%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 224 DIDECVS-NPCQNGGTCVDLVDGYKCECTQAWE-GSNCQ 260
DIDEC S NPCQNGGTCV+ V Y+CEC + G NC+
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39
Score = 39.5 bits (93), Expect = 1e-04
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 338 DINDCES-SPCVNGGECVDQVNGFRCICPVGF-AGQLCE 374
DI++C S +PC NGG CV+ V +RC CP G+ G+ CE
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39
Score = 39.5 bits (93), Expect = 1e-04
Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 504 NINDCK-HNPCQNGGTCVDKVNSFQCICRDGWE 535
+I++C NPCQNGGTCV+ V S++C C G+
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYT 33
Score = 39.5 bits (93), Expect = 1e-04
Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 565 NINDCK-HNPCQNGGTCVDKVNSFQCICRDGWE 596
+I++C NPCQNGGTCV+ V S++C C G+
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYT 33
Score = 36.8 bits (86), Expect = 0.001
Identities = 21/40 (52%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 9 DLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFS-GINCE 47
D++ C + PCQNGGTC NT Y C CP G++ G NCE
Sbjct: 1 DIDECASGNPCQNGGTCVNT-VGSYRCECPPGYTDGRNCE 39
Score = 36.8 bits (86), Expect = 0.001
Identities = 21/40 (52%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 109 DLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFS-GINCE 147
D++ C + PCQNGGTC NT Y C CP G++ G NCE
Sbjct: 1 DIDECASGNPCQNGGTCVNT-VGSYRCECPPGYTDGRNCE 39
Score = 36.8 bits (86), Expect = 0.001
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 301 NINDCV--GQCRHGSTCIDLVNDFHCACLPGYT-GRTCQ 336
+I++C C++G TC++ V + C C PGYT GR C+
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39
Score = 36.5 bits (85), Expect = 0.002
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 402 DINDC-SPQPCYNGGKCVDGVNWFLCECAPGF-AGPDC 437
DI++C S PC NGG CV+ V + CEC PG+ G +C
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNC 38
Score = 33.4 bits (77), Expect = 0.019
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 603 NKNECE-PNPCKNNGTCIDGHADFTCLCKNGWK-GKTCT 639
+ +EC NPC+N GTC++ + C C G+ G+ C
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39
Score = 32.6 bits (75), Expect = 0.039
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 687 NPCKNGGTCVNTGDLYSCICKEGF 710
NPC+NGGTCVNT Y C C G+
Sbjct: 9 NPCQNGGTCVNTVGSYRCECPPGY 32
Score = 31.8 bits (73), Expect = 0.063
Identities = 21/40 (52%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 262 DADECQ-KSPCVNAALGCTNLVGDYRCNCSPGWT-GHNCD 299
D DEC +PC N C N VG YRC C PG+T G NC+
Sbjct: 1 DIDECASGNPCQNGGT-CVNTVGSYRCECPPGYTDGRNCE 39
Score = 31.8 bits (73), Expect = 0.067
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 54 MMGPCGNGGQCKETAGQFQCVCAPGWT-GPTCK 85
PC NGG C T G ++C C PG+T G C+
Sbjct: 7 SGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39
Score = 29.5 bits (67), Expect = 0.38
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 175 DHDHC-NPNPCLNGAPCFNTQADYYCHCTEDWE-GKNC 210
D D C + NPC NG C NT Y C C + G+NC
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNC 38
Score = 27.6 bits (62), Expect = 2.2
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 646 DRGTCKHGGTCADLGSSFFCHCPPDWE-GTSC 676
C++GGTC + S+ C CPP + G +C
Sbjct: 7 SGNPCQNGGTCVNTVGSYRCECPPGYTDGRNC 38
>gnl|CDD|238010 cd00053, EGF, Epidermal growth factor domain, found in epidermal
growth factor (EGF) presents in a large number of
proteins, mostly animal; the list of proteins currently
known to contain one or more copies of an EGF-like
pattern is large and varied; the functional significance
of EGF-like domains in what appear to be unrelated
proteins is not yet clear; a common feature is that
these repeats are found in the extracellular domain of
membrane-bound proteins or in proteins known to be
secreted (exception: prostaglandin G/H synthase); the
domain includes six cysteine residues which have been
shown to be involved in disulfide bonds; the main
structure is a two-stranded beta-sheet followed by a
loop to a C-terminal short two-stranded sheet;
Subdomains between the conserved cysteines vary in
length; the region between the 5th and 6th cysteine
contains two conserved glycines of which at least one
is present in most EGF-like domains; a subset of
these bind calcium.
Length = 36
Score = 34.4 bits (79), Expect = 0.007
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 510 HNPCQNGGTCVDKVNSFQCICRDGWEGE 537
NPC NGGTCV+ S++C+C G+ G+
Sbjct: 5 SNPCSNGGTCVNTPGSYRCVCPPGYTGD 32
Score = 34.4 bits (79), Expect = 0.007
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 571 HNPCQNGGTCVDKVNSFQCICRDGWEGE 598
NPC NGGTCV+ S++C+C G+ G+
Sbjct: 5 SNPCSNGGTCVNTPGSYRCVCPPGYTGD 32
Score = 32.1 bits (73), Expect = 0.055
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 56 GPCGNGGQCKETAGQFQCVCAPGWTGPT 83
PC NGG C T G ++CVC PG+TG
Sbjct: 6 NPCSNGGTCVNTPGSYRCVCPPGYTGDR 33
Score = 32.1 bits (73), Expect = 0.059
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 343 ESSPCVNGGECVDQVNGFRCICPVGFAGQ 371
S+PC NGG CV+ +RC+CP G+ G
Sbjct: 4 ASNPCSNGGTCVNTPGSYRCVCPPGYTGD 32
Score = 31.7 bits (72), Expect = 0.062
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 686 SNPCKNGGTCVNTGDLYSCICKEGF 710
SNPC NGGTCVNT Y C+C G+
Sbjct: 5 SNPCSNGGTCVNTPGSYRCVCPPGY 29
Score = 31.7 bits (72), Expect = 0.066
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 13 CGTHEPCQNGGTCENTAPDQYLCTCPEGFSG 43
C PC NGGTC NT P Y C CP G++G
Sbjct: 2 CAASNPCSNGGTCVNT-PGSYRCVCPPGYTG 31
Score = 31.7 bits (72), Expect = 0.066
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 113 CGTHEPCQNGGTCENTAPDQYLCTCPEGFSG 143
C PC NGGTC NT P Y C CP G++G
Sbjct: 2 CAASNPCSNGGTCVNT-PGSYRCVCPPGYTG 31
Score = 31.7 bits (72), Expect = 0.079
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 230 SNPCQNGGTCVDLVDGYKCECTQAWEGSN 258
SNPC NGGTCV+ Y+C C + G
Sbjct: 5 SNPCSNGGTCVNTPGSYRCVCPPGYTGDR 33
Score = 31.3 bits (71), Expect = 0.098
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 608 EPNPCKNNGTCIDGHADFTCLCKNGWKGKT 637
NPC N GTC++ + C+C G+ G
Sbjct: 4 ASNPCSNGGTCVNTPGSYRCVCPPGYTGDR 33
Score = 30.5 bits (69), Expect = 0.16
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 373 CENGGTCVNTGDLYSCICKEGFEGP 397
C NGGTCVNT Y C+C G+ G
Sbjct: 8 CSNGGTCVNTPGSYRCVCPPGYTGD 32
Score = 29.4 bits (66), Expect = 0.41
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 407 SPQPCYNGGKCVDGVNWFLCECAPGFAGP 435
+ PC NGG CV+ + C C PG+ G
Sbjct: 4 ASNPCSNGGTCVNTPGSYRCVCPPGYTGD 32
Score = 29.4 bits (66), Expect = 0.42
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 307 GQCRHGSTCIDLVNDFHCACLPGYTGRT 334
C +G TC++ + C C PGYTG
Sbjct: 6 NPCSNGGTCVNTPGSYRCVCPPGYTGDR 33
Score = 27.4 bits (61), Expect = 2.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 646 DRGTCKHGGTCADLGSSFFCHCPPDWEG 673
C +GGTC + S+ C CPP + G
Sbjct: 4 ASNPCSNGGTCVNTPGSYRCVCPPGYTG 31
Score = 27.1 bits (60), Expect = 2.9
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 180 NPNPCLNGAPCFNTQADYYCHCTEDWEGKN 209
NPC NG C NT Y C C + G
Sbjct: 4 ASNPCSNGGTCVNTPGSYRCVCPPGYTGDR 33
>gnl|CDD|215652 pfam00008, EGF, EGF-like domain. There is no clear separation
between noise and signal. pfam00053 is very similar, but
has 8 instead of 6 conserved cysteines. Includes some
cytokine receptors. The EGF domain misses the N-terminus
regions of the Ca2+ binding EGF domains (this is the
main reason of discrepancy between swiss-prot domain
start/end and Pfam). The family is hard to model due to
many similar but different sub-types of EGF domains.
Pfam certainly misses a number of EGF domains.
Length = 32
Score = 31.6 bits (72), Expect = 0.076
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 610 NPCKNNGTCIDGHADFTCLCKNGWKGKT 637
NPC N GTC+D +TC C G+ GK
Sbjct: 5 NPCSNGGTCVDTPGGYTCECPEGYTGKR 32
Score = 31.3 bits (71), Expect = 0.085
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 509 KHNPCQNGGTCVDKVNSFQCICRDGWEGE 537
+NPC NGGTCVD + C C +G+ G+
Sbjct: 3 PNNPCSNGGTCVDTPGGYTCECPEGYTGK 31
Score = 31.3 bits (71), Expect = 0.085
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 570 KHNPCQNGGTCVDKVNSFQCICRDGWEGE 598
+NPC NGGTCVD + C C +G+ G+
Sbjct: 3 PNNPCSNGGTCVDTPGGYTCECPEGYTGK 31
Score = 30.9 bits (70), Expect = 0.12
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 13 CGTHEPCQNGGTCENTAPDQYLCTCPEGFSGIN 45
C + PC NGGTC +T P Y C CPEG++G
Sbjct: 1 CSPNNPCSNGGTCVDT-PGGYTCECPEGYTGKR 32
Score = 30.9 bits (70), Expect = 0.12
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 113 CGTHEPCQNGGTCENTAPDQYLCTCPEGFSGIN 145
C + PC NGGTC +T P Y C CPEG++G
Sbjct: 1 CSPNNPCSNGGTCVDT-PGGYTCECPEGYTGKR 32
Score = 30.9 bits (70), Expect = 0.13
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 687 NPCKNGGTCVNTGDLYSCICKEGF 710
NPC NGGTCV+T Y+C C EG+
Sbjct: 5 NPCSNGGTCVDTPGGYTCECPEGY 28
Score = 30.1 bits (68), Expect = 0.24
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 373 CENGGTCVNTGDLYSCICKEGFEGP 397
C NGGTCV+T Y+C C EG+ G
Sbjct: 7 CSNGGTCVDTPGGYTCECPEGYTGK 31
Score = 29.7 bits (67), Expect = 0.28
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 231 NPCQNGGTCVDLVDGYKCECTQAWEGSN 258
NPC NGGTCVD GY CEC + + G
Sbjct: 5 NPCSNGGTCVDTPGGYTCECPEGYTGKR 32
Score = 29.3 bits (66), Expect = 0.42
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 57 PCGNGGQCKETAGQFQCVCAPGWTGPT 83
PC NGG C +T G + C C G+TG
Sbjct: 6 PCSNGGTCVDTPGGYTCECPEGYTGKR 32
Score = 28.9 bits (65), Expect = 0.67
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 309 CRHGSTCIDLVNDFHCACLPGYTGRT 334
C +G TC+D + C C GYTG+
Sbjct: 7 CSNGGTCVDTPGGYTCECPEGYTGKR 32
Score = 27.8 bits (62), Expect = 1.7
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 179 CNPN-PCLNGAPCFNTQADYYCHCTEDWEGKN 209
C+PN PC NG C +T Y C C E + GK
Sbjct: 1 CSPNNPCSNGGTCVDTPGGYTCECPEGYTGKR 32
Score = 27.4 bits (61), Expect = 1.9
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 346 PCVNGGECVDQVNGFRCICPVGFAGQ 371
PC NGG CVD G+ C CP G+ G+
Sbjct: 6 PCSNGGTCVDTPGGYTCECPEGYTGK 31
Score = 27.4 bits (61), Expect = 2.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 410 PCYNGGKCVDGVNWFLCECAPGFAGP 435
PC NGG CVD + CEC G+ G
Sbjct: 6 PCSNGGTCVDTPGGYTCECPEGYTGK 31
Score = 25.9 bits (57), Expect = 6.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 650 CKHGGTCADLGSSFFCHCPPDWEG 673
C +GGTC D + C CP + G
Sbjct: 7 CSNGGTCVDTPGGYTCECPEGYTG 30
>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III
[Energy production and conversion].
Length = 366
Score = 31.8 bits (73), Expect = 1.2
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 12 YCGTHEPCQNGGT--CENTAPDQYLCTCPEGFSGINCEVVDNPCMMG 56
CG + C +G CE Q T P+G + ++ V +G
Sbjct: 90 ECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLG 136
Score = 31.8 bits (73), Expect = 1.2
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 112 YCGTHEPCQNGGT--CENTAPDQYLCTCPEGFSGINCEVVDNPCMMG 156
CG + C +G CE Q T P+G + ++ V +G
Sbjct: 90 ECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLG 136
>gnl|CDD|219496 pfam07645, EGF_CA, Calcium-binding EGF domain.
Length = 42
Score = 27.7 bits (62), Expect = 1.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 511 NPCQNGGTCVDKVNSFQCICRDGWE 535
+ C CV+ + SF+C+C DG+E
Sbjct: 10 HNCPANTVCVNTIGSFECVCPDGYE 34
Score = 27.7 bits (62), Expect = 1.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 572 NPCQNGGTCVDKVNSFQCICRDGWE 596
+ C CV+ + SF+C+C DG+E
Sbjct: 10 HNCPANTVCVNTIGSFECVCPDGYE 34
Score = 27.3 bits (61), Expect = 3.3
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 224 DIDECVS--NPCQNGGTCVDLVDGYKCECTQAWE 255
D+DEC + C CV+ + ++C C +E
Sbjct: 1 DVDECADGTHNCPANTVCVNTIGSFECVCPDGYE 34
>gnl|CDD|214544 smart00181, EGF, Epidermal growth factor-like domain.
Length = 35
Score = 27.5 bits (61), Expect = 2.3
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 510 HNPCQNGGTCVDKVNSFQCICRDGWEG 536
PC NG TC++ S+ C C G+ G
Sbjct: 5 GGPCSNG-TCINTPGSYTCSCPPGYTG 30
Score = 27.5 bits (61), Expect = 2.3
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 571 HNPCQNGGTCVDKVNSFQCICRDGWEG 597
PC NG TC++ S+ C C G+ G
Sbjct: 5 GGPCSNG-TCINTPGSYTCSCPPGYTG 30
Score = 25.6 bits (56), Expect = 9.8
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 56 GPCGNGGQCKETAGQFQCVCAPGWTG 81
GPC NG C T G + C C PG+TG
Sbjct: 6 GPCSNG-TCINTPGSYTCSCPPGYTG 30
>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated.
Length = 450
Score = 29.0 bits (66), Expect = 9.4
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 4/22 (18%)
Query: 692 GGTCVNTGDLYSCICKEGFVHA 713
GGTCVN G C+ K+ +
Sbjct: 39 GGTCVNVG----CVPKKLMWYG 56
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.140 0.513
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 33,402,172
Number of extensions: 2945187
Number of successful extensions: 2022
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1976
Number of HSP's successfully gapped: 208
Length of query: 721
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 617
Effective length of database: 6,324,786
Effective search space: 3902392962
Effective search space used: 3902392962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.2 bits)