RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17084
(721 letters)
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 129 bits (326), Expect = 3e-35
Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 31/161 (19%)
Query: 258 NCQYDADECQK--SPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNINDCVGQ-CRHGST 314
+ Q D DEC +PC +A C N +G + C C G+TG C++++N+CV C++ +T
Sbjct: 1 SAQ-DVDECSLGANPCEHAGK-CINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDAT 58
Query: 315 CIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCE 374
C+D + +F C C+PGY G C+ + ++C SSPC++ G C+D++N F+C CP GF G LC+
Sbjct: 59 CLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 118
Query: 375 NGGTCVNTGDLYSCICKEGFEGPDCGQDINDCSPQPCYNGG 415
D++
Sbjct: 119 --------------------------VDLHHILDAQKMVWN 133
Score = 126 bits (320), Expect = 2e-34
Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 25/154 (16%)
Query: 503 ENINDC--KHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGK 560
+++++C NPC++ G C++ + SF+C C G+ +G
Sbjct: 3 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGY-----------------------TGP 39
Query: 561 YCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCID 620
C ++N+C NPCQN TC+D++ FQCIC G+EG C N +EC +PC +NG C+D
Sbjct: 40 RCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLD 99
Query: 621 GHADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGG 654
+F C C G+ G C H
Sbjct: 100 KINEFQCECPTGFTGHLCQVDLHHILDAQKMVWN 133
Score = 123 bits (312), Expect = 2e-33
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 3/132 (2%)
Query: 564 ENINDC--KHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDG 621
+++++C NPC++ G C++ + SF+C C G+ G C + NEC NPC+N+ TC+D
Sbjct: 3 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQ 62
Query: 622 HADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKL 681
+F C+C G++G C C C H G C D + F C CP + G C + L
Sbjct: 63 IGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQV-DL 121
Query: 682 NACKSNPCKNGG 693
+
Sbjct: 122 HHILDAQKMVWN 133
Score = 121 bits (307), Expect = 1e-32
Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 12/132 (9%)
Query: 174 VDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPC 233
VD NPC + C NT + C C + + G C D++ECVSNPC
Sbjct: 5 VDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCE-----------IDVNECVSNPC 53
Query: 234 QNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNCSPGW 293
QN TC+D + ++C C +EG +C+ + DEC SPC++ C + + +++C C G+
Sbjct: 54 QNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGR-CLDKINEFQCECPTGF 112
Query: 294 TGHNCDVNINDC 305
TGH C V+++
Sbjct: 113 TGHLCQVDLHHI 124
Score = 118 bits (299), Expect = 1e-31
Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 26/145 (17%)
Query: 373 CENGGTCVNTGDLYSCICKEGFEGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCECAPGF 432
CE+ G C+NT + C C +G+ GP C D+N+C PC N C+D + F C C PG+
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGY 74
Query: 433 AGPDCRININECASNPCGYGKEILTVQSRSRSPAYLCVSNPAYLVARCVSQSGGSFKCSC 492
G C +N +ECAS+PC + RC+ + F+C C
Sbjct: 75 EGVHCEVNTDECASSPCLHN-------------------------GRCLDK-INEFQCEC 108
Query: 493 DAGFSGKYCHENINDCKHNPCQNGG 517
GF+G C +++
Sbjct: 109 PTGFTGHLCQVDLHHILDAQKMVWN 133
Score = 115 bits (290), Expect = 2e-30
Identities = 51/180 (28%), Positives = 76/180 (42%), Gaps = 51/180 (28%)
Query: 401 QDINDCS--PQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININECASNPCGYGKEILTV 458
QD+++CS PC + GKC++ + F C+C G+ GP C I++NEC SNPC
Sbjct: 3 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQND------ 56
Query: 459 QSRSRSPAYLCVSNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGT 518
A C+ Q G F+C C G+ G +C N ++C +PC + G
Sbjct: 57 -------------------ATCLDQIGE-FQCICMPGYEGVHCEVNTDECASSPCLHNGR 96
Query: 519 CVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGG 578
C+DK+N FQC C GF+G C +++
Sbjct: 97 CLDKINEFQCECP-----------------------TGFTGHLCQVDLHHILDAQKMVWN 133
Score = 115 bits (290), Expect = 2e-30
Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 39/166 (23%)
Query: 109 DLNYC-GTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKET 167
D++ C PC++ G C NT + C C +G++G CE+
Sbjct: 4 DVDECSLGANPCEHAGKCINT-LGSFECQCLQGYTGPRCEI------------------- 43
Query: 168 AGQFQCVDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDE 227
D + C NPC N A C + ++ C C +EG +C + DE
Sbjct: 44 -------DVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCE-----------VNTDE 85
Query: 228 CVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVN 273
C S+PC + G C+D ++ ++CEC + G CQ D + +
Sbjct: 86 CASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLHHILDAQKMV 131
Score = 103 bits (259), Expect = 4e-26
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 26/155 (16%)
Query: 9 DLNYC-GTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKET 67
D++ C PC++ G C NT + C C +G++G CE+ N C+ PC N C +
Sbjct: 4 DVDECSLGANPCEHAGKCINT-LGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQ 62
Query: 68 AGQFQCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGTCEN 127
G+FQC+C PG+ G C++ + + C + PC + G C +
Sbjct: 63 IGEFQCICMPGYEGVHCEV----------------------NTDECASS-PCLHNGRCLD 99
Query: 128 TAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGG 162
+++ C CP GF+G C+V + +
Sbjct: 100 -KINEFQCECPTGFTGHLCQVDLHHILDAQKMVWN 133
Score = 63.4 bits (155), Expect = 3e-12
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 650 CKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGGTCVNTGDLYSCICKEG 709
C+H G C + SF C C + G C I +N C SNPC+N TC++ + CIC G
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGPRCEI-DVNECVSNPCQNDATCLDQIGEFQCICMPG 73
Query: 710 F 710
+
Sbjct: 74 Y 74
Score = 38.0 bits (89), Expect = 0.002
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 683 ACKSNPCKNGGTCVNTGDLYSCICKEGF 710
+ +NPC++ G C+NT + C C +G+
Sbjct: 9 SLGANPCEHAGKCINTLGSFECQCLQGY 36
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 123 bits (311), Expect = 1e-32
Identities = 31/190 (16%), Positives = 54/190 (28%), Gaps = 15/190 (7%)
Query: 182 NPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQNGGTCVD 241
C+ + + + + E N D D+C ++PCQN G C D
Sbjct: 10 RECMEETCSYEEAREVFEDSDKTNEFWNK-----------YKDGDQCETSPCQNQGKCKD 58
Query: 242 LVDGYKCECTQAWEGSNCQYDADE-CQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDV 300
+ Y C C + +EG NC+ + C C C+C+ G+T +
Sbjct: 59 GLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQF-CHEEQNSVVCSCARGYTLADNGK 117
Query: 301 NINDCVGQ-CRHGSTCIDLVNDFHCACLPGYT-GRTCQTDINDCESSPCVNGGECVDQVN 358
C + + G + + P N + +D
Sbjct: 118 ACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQ 177
Query: 359 GFRCICPVGF 368
Sbjct: 178 TQPERGDNNL 187
Score = 123 bits (310), Expect = 2e-32
Identities = 32/207 (15%), Positives = 53/207 (25%), Gaps = 28/207 (13%)
Query: 228 CVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRC 287
+ C + + + E N D D+C+ SPC N C + +G+Y C
Sbjct: 7 HLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGK-CKDGLGEYTC 65
Query: 288 NCSPGWTGHNCDVNINDC--VGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESS 345
C G+ G NC++ + C + N C+C GYT
Sbjct: 66 TCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 125
Query: 346 PCVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVNTGDLYSCICKEGFEGPDCGQDIND 405
PC + + + G + +
Sbjct: 126 PCGKQTLERRKRSVAQATSSSGE-------------------------APDSITWKPYDA 160
Query: 406 CSPQPCYNGGKCVDGVNWFLCECAPGF 432
P N +D
Sbjct: 161 ADLDPTENPFDLLDFNQTQPERGDNNL 187
Score = 121 bits (304), Expect = 1e-31
Identities = 27/171 (15%), Positives = 49/171 (28%), Gaps = 1/171 (0%)
Query: 542 SNQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICA 601
S + D +++ + C+ +PCQN G C D + + C C +G+EG+ C
Sbjct: 18 SYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 77
Query: 602 NNKNE-CEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLG 660
+ C + + C + C C G+ C
Sbjct: 78 LFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKR 137
Query: 661 SSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGGTCVNTGDLYSCICKEGFV 711
S S +A +P +N ++
Sbjct: 138 SVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQTQPERGDNNLT 188
Score = 117 bits (295), Expect = 2e-30
Identities = 30/168 (17%), Positives = 49/168 (29%), Gaps = 14/168 (8%)
Query: 299 DVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVN 358
++ +C + + + D + CE+SPC N G+C D +
Sbjct: 2 EMKKGHLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLG 61
Query: 359 GFRCICPVGFAGQLCE-------------NGGTCVNTGDLYSCICKEGFEGPDCGQDIND 405
+ C C GF G+ CE C + C C G+ D G+
Sbjct: 62 EYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIP 121
Query: 406 CSPQPCYNGGKCVDGVNWFLCECAPGFA-GPDCRININECASNPCGYG 452
P PC + + G A + +P
Sbjct: 122 TGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENP 169
Score = 113 bits (284), Expect = 6e-29
Identities = 30/194 (15%), Positives = 51/194 (26%), Gaps = 25/194 (12%)
Query: 480 CVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 539
C + D +++ + C+ +PCQN G C D + + C C +G+E
Sbjct: 17 CSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE---- 72
Query: 540 ANSNQSGGSFKCSCDAGFSGKYCHENIND-CKHNPCQNGGTCVDKVNSFQCICRDGWEGE 598
GK C C + C ++ NS C C G+
Sbjct: 73 -------------------GKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLA 113
Query: 599 ICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWK-GKTCTSKNGHCDRGTCKHGGTCA 657
P PC + +G D ++
Sbjct: 114 DNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLL 173
Query: 658 DLGSSFFCHCPPDW 671
D + +
Sbjct: 174 DFNQTQPERGDNNL 187
Score = 103 bits (259), Expect = 1e-25
Identities = 31/191 (16%), Positives = 48/191 (25%), Gaps = 20/191 (10%)
Query: 150 DNPCMMGPCGNGGQC-------KETAGQFQCVDHDHCNPNPCLNGAPCFNTQADYYCHCT 202
+ CM C K + D D C +PC N C + +Y C C
Sbjct: 9 ERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCL 68
Query: 203 EDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYD 262
E +EGKNC C + C + + C C + + ++
Sbjct: 69 EGFEGKNCE----------LFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKA 118
Query: 263 ADECQKSPCVNAALGCTNLVGDYRCNCSPGWT-GHNCDVNINDCVGQ-CRHGSTCIDLVN 320
PC L + S G + + +D
Sbjct: 119 CIPTGPYPCGKQTL-ERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQ 177
Query: 321 DFHCACLPGYT 331
T
Sbjct: 178 TQPERGDNNLT 188
Score = 100 bits (252), Expect = 1e-24
Identities = 26/140 (18%), Positives = 41/140 (29%), Gaps = 2/140 (1%)
Query: 572 NPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKN 631
C ++ E + ++CE +PC+N G C DG ++TC C
Sbjct: 10 RECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLE 69
Query: 632 GWKGKTC-TSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCK 690
G++GK C C C + +S C C + PC
Sbjct: 70 GFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGK-ACIPTGPYPCG 128
Query: 691 NGGTCVNTGDLYSCICKEGF 710
+ G
Sbjct: 129 KQTLERRKRSVAQATSSSGE 148
Score = 93.3 bits (232), Expect = 6e-22
Identities = 31/233 (13%), Positives = 54/233 (23%), Gaps = 60/233 (25%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVCAP 77
C A + + N + C PC N G+CK+ G++ C C
Sbjct: 11 ECMEETCSYEEA-REVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLE 69
Query: 78 GWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGTCENTAPDQYLCTC 137
G+ G C++ + + C + +C+C
Sbjct: 70 GFEGKNCEL----------------------FTRKLCSLDNGDCDQFCHEE-QNSVVCSC 106
Query: 138 PEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVDHDHCNPNPCLNGAPCFNTQADY 197
G++ + P PCG + Q
Sbjct: 107 ARGYTLADNGKACIPTGPYPCGKQTLERRKRSVAQA------------------------ 142
Query: 198 YCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQNGGTCVDLVDGYKCEC 250
S D+ D +P +N +D
Sbjct: 143 ------------TSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQTQPERG 183
Score = 87.1 bits (216), Expect = 8e-20
Identities = 35/239 (14%), Positives = 48/239 (20%), Gaps = 62/239 (25%)
Query: 57 PCGNGGQCKETAGQFQCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTH 116
C E A + D + C T
Sbjct: 11 ECMEETCSYEEAREVFEDSDKTNEFWNKYK----------------------DGDQCETS 48
Query: 117 EPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVDH 176
PCQN G C++ +Y CTC EGF G NCE+
Sbjct: 49 -PCQNQGKCKDG-LGEYTCTCLEGFEGKNCELFTR------------------------- 81
Query: 177 DHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQNG 236
C+ + C Q C C + + PC
Sbjct: 82 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNG-----------KACIPTGPYPCGKQ 130
Query: 237 GTCVDLVDGYKCECTQAW-EGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNCSPGWT 294
+ + S D P N + T
Sbjct: 131 TLERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPF-DLLDFNQTQPERGDNNLT 188
Score = 74.8 bits (184), Expect = 2e-15
Identities = 35/177 (19%), Positives = 47/177 (26%), Gaps = 36/177 (20%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEV-VDNPCMMGPCGNGGQCKETAGQFQCVCA 76
PCQN G C++ +Y CTC EGF G NCE+ C + C E C CA
Sbjct: 49 PCQNQGKCKDG-LGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCA 107
Query: 77 PGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGTCENTAPDQYLCT 136
G+T G + PC T
Sbjct: 108 RGYTLADNGK----------------------ACIPTGPY-PCGKQTLERRK-RSVAQAT 143
Query: 137 CPEGFS-GINCEVVDNPCMMGPCGNGGQCKETAGQFQCVDHDHCNPNPCLNGAPCFN 192
G + + + P N +D + P N
Sbjct: 144 SSSGEAPDSITWKPYDAADLDPTENPFDL---------LDFNQTQPERGDNNLTRIV 191
Score = 54.0 bits (130), Expect = 2e-08
Identities = 10/76 (13%), Positives = 21/76 (27%), Gaps = 1/76 (1%)
Query: 9 DLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETA 68
+ + C + +C+C G++ + P PCG +
Sbjct: 79 FTRKLCSLDNGDCDQFCHEE-QNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKR 137
Query: 69 GQFQCVCAPGWTGPTC 84
Q + G +
Sbjct: 138 SVAQATSSSGEAPDSI 153
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 115 bits (291), Expect = 1e-30
Identities = 28/128 (21%), Positives = 43/128 (33%), Gaps = 3/128 (2%)
Query: 228 CVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRC 287
+ C + + + E N D D+C+ SPC N C + +G+Y C
Sbjct: 7 HLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGK-CKDGLGEYTC 65
Query: 288 NCSPGWTGHNCDVNINDC--VGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESS 345
C G+ G NC++ + C + N C+C GYT
Sbjct: 66 TCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 125
Query: 346 PCVNGGEC 353
PC
Sbjct: 126 PCGKQTLE 133
Score = 108 bits (271), Expect = 7e-28
Identities = 30/143 (20%), Positives = 42/143 (29%), Gaps = 27/143 (18%)
Query: 309 CRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGF 368
C + + + D + CE+SPC N G+C D + + C C GF
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF 71
Query: 369 AGQLCENGGTCVNTGDLYSCICKEGFEGPDCGQDIND-CSPQPCYNGGKCVDGVNWFLCE 427
G+ CE CS C + N +C
Sbjct: 72 EGKNCE--------------------------LFTRKLCSLDNGDCDQFCHEEQNSVVCS 105
Query: 428 CAPGFAGPDCRININECASNPCG 450
CA G+ D PCG
Sbjct: 106 CARGYTLADNGKACIPTGPYPCG 128
Score = 106 bits (266), Expect = 3e-27
Identities = 25/125 (20%), Positives = 39/125 (31%), Gaps = 2/125 (1%)
Query: 572 NPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKN 631
C ++ E + ++CE +PC+N G C DG ++TC C
Sbjct: 10 RECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLE 69
Query: 632 GWKGKTC-TSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCK 690
G++GK C C C + +S C C + PC
Sbjct: 70 GFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGK-ACIPTGPYPCG 128
Query: 691 NGGTC 695
Sbjct: 129 KQTLE 133
Score = 104 bits (262), Expect = 1e-26
Identities = 27/140 (19%), Positives = 42/140 (30%), Gaps = 24/140 (17%)
Query: 480 CVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 539
C + D +++ + C+ +PCQN G C D + + C C +G+E
Sbjct: 17 CSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE---- 72
Query: 540 ANSNQSGGSFKCSCDAGFSGKYCHENIND-CKHNPCQNGGTCVDKVNSFQCICRDGWEGE 598
GK C C + C ++ NS C C G+
Sbjct: 73 -------------------GKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLA 113
Query: 599 ICANNKNECEPNPCKNNGTC 618
P PC
Sbjct: 114 DNGKACIPTGPYPCGKQTLE 133
Score = 101 bits (253), Expect = 2e-25
Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 14/136 (10%)
Query: 182 NPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQNGGTCVD 241
C+ + + + + E N D D+C ++PCQN G C D
Sbjct: 10 RECMEETCSYEEAREVFEDSDKTNEFWNK-----------YKDGDQCETSPCQNQGKCKD 58
Query: 242 LVDGYKCECTQAWEGSNCQYDADE-CQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDV 300
+ Y C C + +EG NC+ + C C C+C+ G+T +
Sbjct: 59 GLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQF-CHEEQNSVVCSCARGYTLADNGK 117
Query: 301 NINDCVGQ-CRHGSTC 315
C +
Sbjct: 118 ACIPTGPYPCGKQTLE 133
Score = 99.7 bits (249), Expect = 8e-25
Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 1/116 (0%)
Query: 542 SNQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICA 601
S + D +++ + C+ +PCQN G C D + + C C +G+EG+ C
Sbjct: 18 SYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 77
Query: 602 NNKNE-CEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTC 656
+ C + + C + C C G+ C
Sbjct: 78 LFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLE 133
Score = 97.4 bits (243), Expect = 4e-24
Identities = 27/148 (18%), Positives = 42/148 (28%), Gaps = 27/148 (18%)
Query: 373 CENGGTCVNTGDLYSCICKEGFEGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCECAPGF 432
C + E + +D + C PC N GKC DG+ + C C GF
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF 71
Query: 433 AGPDCRININE-CASNPCGYGKEILTVQSRSRSPAYLCVSNPAYLVARCVSQSGGSFKCS 491
G +C + + C+ + C + S CS
Sbjct: 72 EGKNCELFTRKLCSLDNGDCD-------------------------QFCHEE-QNSVVCS 105
Query: 492 CDAGFSGKYCHENINDCKHNPCQNGGTC 519
C G++ + PC
Sbjct: 106 CARGYTLADNGKACIPTGPYPCGKQTLE 133
Score = 91.2 bits (227), Expect = 6e-22
Identities = 24/148 (16%), Positives = 43/148 (29%), Gaps = 24/148 (16%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVCAP 77
C A + + N + C PC N G+CK+ G++ C C
Sbjct: 11 ECMEETCSYEEA-REVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLE 69
Query: 78 GWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGTCENTAPDQYLCTC 137
G+ G C++ + + C + +C+C
Sbjct: 70 GFEGKNCEL----------------------FTRKLCSLDNGDCDQFCHEE-QNSVVCSC 106
Query: 138 PEGFSGINCEVVDNPCMMGPCGNGGQCK 165
G++ + P PCG +
Sbjct: 107 ARGYTLADNGKACIPTGPYPCGKQTLER 134
Score = 90.4 bits (225), Expect = 1e-21
Identities = 23/173 (13%), Positives = 41/173 (23%), Gaps = 50/173 (28%)
Query: 409 QPCYNGGKCVDGVNWFLCECAPGFAGPDCRININECASNPCGYGKEILTVQSRSRSPAYL 468
+ C + + + + ++C ++PC
Sbjct: 10 RECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQ---------------- 53
Query: 469 CVSNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHENIND-CKHNPCQNGGTCVDKVNSFQ 527
+C G + C+C GF GK C C + C ++ NS
Sbjct: 54 ---------GKCKDG-LGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVV 103
Query: 528 CICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTC 580
CSC G++ + PC
Sbjct: 104 -----------------------CSCARGYTLADNGKACIPTGPYPCGKQTLE 133
Score = 90.0 bits (224), Expect = 1e-21
Identities = 25/158 (15%), Positives = 38/158 (24%), Gaps = 37/158 (23%)
Query: 118 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVDHD 177
C A + + N D D
Sbjct: 11 ECMEETCSYEEA-REVFEDSDKTNEFWNKYK--------------------------DGD 43
Query: 178 HCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQNGG 237
C +PC N C + +Y C C E +EGKNC C +
Sbjct: 44 QCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE----------LFTRKLCSLDNGDCDQ 93
Query: 238 TCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAA 275
C + + C C + + ++ PC
Sbjct: 94 FCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQT 131
Score = 83.1 bits (206), Expect = 4e-19
Identities = 16/101 (15%), Positives = 29/101 (28%)
Query: 610 NPCKNNGTCIDGHADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPP 669
C + + + C+ C++ G C D + C C
Sbjct: 10 RECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLE 69
Query: 670 DWEGTSCHIGKLNACKSNPCKNGGTCVNTGDLYSCICKEGF 710
+EG +C + C + C + C C G+
Sbjct: 70 GFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGY 110
Score = 76.2 bits (188), Expect = 1e-16
Identities = 32/189 (16%), Positives = 42/189 (22%), Gaps = 65/189 (34%)
Query: 51 NPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDL 110
CM C E A + D
Sbjct: 10 RECMEETC-----SYEEAREVFEDSDKTNEFWNKYK----------------------DG 42
Query: 111 NYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQ 170
+ C T PCQN G C++ +Y CTC EGF G NCE+
Sbjct: 43 DQCETS-PCQNQGKCKDG-LGEYTCTCLEGFEGKNCELFTR------------------- 81
Query: 171 FQCVDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVS 230
C+ + C Q C C + +
Sbjct: 82 ------KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGK-----------ACIPTGP 124
Query: 231 NPCQNGGTC 239
PC
Sbjct: 125 YPCGKQTLE 133
Score = 47.7 bits (114), Expect = 1e-06
Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
Query: 9 DLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCK 65
+ + C + +C+C G++ + P PCG +
Sbjct: 79 FTRKLCSLDNGDCDQFCHEE-QNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLER 134
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 115 bits (290), Expect = 3e-30
Identities = 48/143 (33%), Positives = 65/143 (45%), Gaps = 11/143 (7%)
Query: 177 DHCNPNPCLNGAPCFNTQAD--YYCHCTEDWEGKNCSFPRYKCDNPPCD-DIDECVSNPC 233
D C+PNPC NG C AD + C C + + NCS + C NPC
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60
Query: 234 QNGGTCV-------DLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYR 286
NGGTC D GY C+C + + G +CQ++ +EC+ PC N + CT+LV +Y
Sbjct: 61 HNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGI-CTDLVANYS 119
Query: 287 CNCSPGWTGHNCDVNINDCVGQC 309
C C + G NC
Sbjct: 120 CECPGEFMGRNCQYKGGGHHHHH 142
Score = 114 bits (288), Expect = 5e-30
Identities = 46/158 (29%), Positives = 61/158 (38%), Gaps = 35/158 (22%)
Query: 226 DECVSNPCQNGGTCVDLV--DGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVG 283
D C NPC+NGG C+ + + CEC + NC + +A CT
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTP--- 57
Query: 284 DYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCI-------DLVNDFHCACLPGYTGRTCQ 336
C +G TC D + C C G+ G CQ
Sbjct: 58 -----------------------NPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQ 94
Query: 337 TDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCE 374
+IN+CE PC NGG C D V + C CP F G+ C+
Sbjct: 95 HNINECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQ 132
Score = 110 bits (277), Expect = 1e-28
Identities = 49/148 (33%), Positives = 66/148 (44%), Gaps = 20/148 (13%)
Query: 507 DCKHNPCQNGGTCVDKV--NSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHE 564
C NPC+NGG C+ + SF C C DG+ C++ + +
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPT----------- 50
Query: 565 NINDCKHNPCQNGGTCV-------DKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGT 617
+ C NPC NGGTC D + C C G+ G C +N NECE PCKN G
Sbjct: 51 SAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGI 110
Query: 618 CIDGHADFTCLCKNGWKGKTCTSKNGHC 645
C D A+++C C + G+ C K G
Sbjct: 111 CTDLVANYSCECPGEFMGRNCQYKGGGH 138
Score = 108 bits (272), Expect = 6e-28
Identities = 50/158 (31%), Positives = 62/158 (39%), Gaps = 33/158 (20%)
Query: 118 PCQNGGTCENT-APDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVDH 176
PC+NGG C A + C CP+GF+ NC V
Sbjct: 7 PCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEE--------------PTSA 52
Query: 177 DHCNPNPCLNGAPCFNTQA-------DYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECV 229
C PNPC NG C ++A Y C C + G +C +I+EC
Sbjct: 53 GPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQ-----------HNINECE 101
Query: 230 SNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQ 267
PC+NGG C DLV Y CEC + G NCQY
Sbjct: 102 VEPCKNGGICTDLVANYSCECPGEFMGRNCQYKGGGHH 139
Score = 103 bits (258), Expect = 4e-26
Identities = 49/208 (23%), Positives = 66/208 (31%), Gaps = 70/208 (33%)
Query: 405 DCSPQPCYNGGKCVDGV--NWFLCECAPGFAGPDCRININECASNPCGYGKEILTVQSRS 462
C P PC NGG C+ G+ F CEC GF P+C + +
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEP------------ 49
Query: 463 RSPAYLCVSNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDK 522
+ C NPC NGGTC
Sbjct: 50 ----------------------------------------TSAGPCTPNPCHNGGTCEIS 69
Query: 523 VNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVD 582
A + + C C GF+G +C NIN+C+ PC+NGG C D
Sbjct: 70 E----------------AYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTD 113
Query: 583 KVNSFQCICRDGWEGEICANNKNECEPN 610
V ++ C C + G C +
Sbjct: 114 LVANYSCECPGEFMGRNCQYKGGGHHHH 141
Score = 97.5 bits (243), Expect = 6e-24
Identities = 45/180 (25%), Positives = 60/180 (33%), Gaps = 49/180 (27%)
Query: 341 DCESSPCVNGGECVDQV--NGFRCICPVGFAGQLCENGGTCVNTGDLYSCICKEGFEGPD 398
C+ +PC NGG C+ + F C CP GF C E +
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCS--------------SVVEVASDEE 47
Query: 399 CGQDINDCSPQPCYNGGKCV-------DGVNWFLCECAPGFAGPDCRININECASNPCGY 451
C+P PC+NGG C D ++C+C GF G C+ NINEC PC
Sbjct: 48 EPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKN 107
Query: 452 GKEILTVQSRSRSPAYLCVSNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHENINDCKHN 511
G C ++ C C F G+ C H+
Sbjct: 108 G-------------------------GICTDL-VANYSCECPGEFMGRNCQYKGGGHHHH 141
Score = 94.4 bits (235), Expect = 5e-23
Identities = 44/141 (31%), Positives = 60/141 (42%), Gaps = 22/141 (15%)
Query: 568 DCKHNPCQNGGTCVDKV--NSFQCICRDGWEGEIC------------ANNKNECEPNPCK 613
C NPC+NGG C+ + SF C C DG+ C + C PNPC
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCH 61
Query: 614 NNGTCI-------DGHADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCH 666
N GTC D + C C G+ G C C+ CK+GG C DL +++ C
Sbjct: 62 NGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCE 121
Query: 667 CPPDWEGTSCHIGKLNACKSN 687
CP ++ G +C K +
Sbjct: 122 CPGEFMGRNCQY-KGGGHHHH 141
Score = 83.2 bits (206), Expect = 5e-19
Identities = 44/156 (28%), Positives = 58/156 (37%), Gaps = 44/156 (28%)
Query: 18 PCQNGGTCENT-APDQYLCTCPEGFSGINCEV------------VDNPCMMGPCGNGGQC 64
PC+NGG C A + C CP+GF+ NC PC PC NGG C
Sbjct: 7 PCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTC 66
Query: 65 KETAGQ-------FQCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHE 117
+ + + C C G+ G C+ ++N C E
Sbjct: 67 EISEAYRGDTFIGYVCKCPRGFNGIHCQH----------------------NINEC-EVE 103
Query: 118 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPC 153
PC+NGG C + Y C CP F G NC+
Sbjct: 104 PCKNGGICTDL-VANYSCECPGEFMGRNCQYKGGGH 138
Score = 79.4 bits (196), Expect = 1e-17
Identities = 47/176 (26%), Positives = 64/176 (36%), Gaps = 45/176 (25%)
Query: 52 PCMMGPCGNGGQCKE--TAGQFQCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSD 109
C PC NGG C G F C C G+T P C S +
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEV----------ASDEEEPTS 51
Query: 110 LNYCGTHEPCQNGGTCENTAP------DQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQ 163
C + PC NGGTCE + Y+C CP GF+GI+C+
Sbjct: 52 AGPCTPN-PCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQH--------------- 95
Query: 164 CKETAGQFQCVDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDN 219
+ + C PC NG C + A+Y C C ++ G+NC + +
Sbjct: 96 -----------NINECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQYKGGGHHH 140
Score = 55.1 bits (133), Expect = 3e-09
Identities = 31/114 (27%), Positives = 39/114 (34%), Gaps = 36/114 (31%)
Query: 606 ECEPNPCKNNGTCIDGHAD--FTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSF 663
C+PNPC+N G C+ G AD F+C C +G+ C+S
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEP------------ 49
Query: 664 FCHCPPDWEGTSCHIGKLNACKSNPCKNGGTCVNTGDL-------YSCICKEGF 710
C NPC NGGTC + Y C C GF
Sbjct: 50 ---------------TSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGF 88
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 119 bits (300), Expect = 9e-30
Identities = 68/306 (22%), Positives = 94/306 (30%), Gaps = 72/306 (23%)
Query: 221 PCDDIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTN 280
D V+ P V C +G + +
Sbjct: 80 KGIMADPTVNVPLLGTVPHKASVVQVGFPCLGKQDGVAA-----------FEVDVIVMNS 128
Query: 281 LVGDYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDIN 340
C +C G CR+G C + C C G+ G C+ +
Sbjct: 129 EGNTILKTPQNAIFFKTCQ--QAECPGGCRNGGFCNE---RRICECPDGFHGPHCEKALC 183
Query: 341 DCESSPCVNGGECVDQVNGFRCICPVGFAGQLCE---------NGGTCVNTGDLYSCICK 391
+ C+NGG CV CICP GF G C+ NGGTC CIC
Sbjct: 184 ---TPRCMNGGLCV---TPGFCICPPGFYGVNCDKANCSTTCFNGGTCFYP---GKCICP 234
Query: 392 EGFEGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININECASNPCGY 451
G EG C +I+ C PC NGGKC+ C+C+ G+ G C + E CG
Sbjct: 235 PGLEGEQC--EISKCPQ-PCRNGGKCIGK---SKCKCSKGYQGDLCSKPVCEP---GCGA 285
Query: 452 GKEILTVQSRSRSPAYLCVSNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHENINDCKHN 511
C KC C G+ G++C++
Sbjct: 286 H-------------------------GTCHE----PNKCQCQEGWHGRHCNKRYEASLIG 316
Query: 512 PCQNGG 517
+
Sbjct: 317 TKHHHH 322
Score = 112 bits (281), Expect = 3e-27
Identities = 63/287 (21%), Positives = 85/287 (29%), Gaps = 61/287 (21%)
Query: 341 DCESSPCVNGGECVDQVNGFRCICPVGFAG--QLCENGGTCVNTGDLYSCICKEGFEGPD 398
+ P + V C G + + G+ +
Sbjct: 86 PTVNVPLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKT 145
Query: 399 CGQDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININECASNPCGYGKEILTV 458
C Q P C NGG C + +CEC GF GP C + C G
Sbjct: 146 CQQA---ECPGGCRNGGFCNER---RICECPDGFHGPHCEKA---LCTPRCMNG------ 190
Query: 459 QSRSRSPAYLCVSNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGT 518
CV+ C C GF G C + C NGGT
Sbjct: 191 -------------------GLCVT----PGFCICPPGFYGVNCDKANC---STTCFNGGT 224
Query: 519 CVDKVNSFQCICRDGWEGEICANSNQSG---------GSFKCSCDAGFSGKYCHENINDC 569
C +CIC G EGE C S G KC C G+ G C + + +
Sbjct: 225 CF---YPGKCICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCEP 281
Query: 570 KHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNG 616
C GTC + +C C++GW G C ++
Sbjct: 282 ---GCGAHGTCHE---PNKCQCQEGWHGRHCNKRYEASLIGTKHHHH 322
Score = 112 bits (281), Expect = 3e-27
Identities = 57/223 (25%), Positives = 79/223 (35%), Gaps = 34/223 (15%)
Query: 480 CVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 539
++ G + + K C + C+NGG C + C C DG+ G C
Sbjct: 125 VMNSEGNTILKTPQNAIFFKTCQQAECP---GGCRNGGFCNE---RRICECPDGFHGPHC 178
Query: 540 ANSNQSGG---------SFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCI 590
+ + C C GF G C + C NGGTC +CI
Sbjct: 179 EKALCTPRCMNGGLCVTPGFCICPPGFYGVNCDKANC---STTCFNGGTCF---YPGKCI 232
Query: 591 CRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCTSKNGHCDRGTC 650
C G EGE C ++C P PC+N G CI C C G++G C+ C
Sbjct: 233 CPPGLEGEQC--EISKC-PQPCRNGGKCIGK---SKCKCSKGYQGDLCSK---PVCEPGC 283
Query: 651 KHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGG 693
GTC + C C W G C+ + A +
Sbjct: 284 GAHGTCHE---PNKCQCQEGWHGRHCNK-RYEASLIGTKHHHH 322
Score = 108 bits (270), Expect = 9e-26
Identities = 56/249 (22%), Positives = 74/249 (29%), Gaps = 43/249 (17%)
Query: 110 LNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAG 169
L + N+ + L T C+ + P G C NGG C E
Sbjct: 110 LGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQAECP---GGCRNGGFCNER-R 165
Query: 170 QFQCVD-------HDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPC 222
+C D C+NG C +C C + G NC
Sbjct: 166 ICECPDGFHGPHCEKALCTPRCMNGGLCVTP---GFCICPPGFYGVNCDKA--------- 213
Query: 223 DDIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLV 282
S C NGGTC KC C EG C+ PC N +
Sbjct: 214 -----NCSTTCFNGGTCFY---PGKCICPPGLEGEQCEIS---KCPQPCRNGG----KCI 258
Query: 283 GDYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDC 342
G +C CS G+ G C + + C TC + C C G+ GR C
Sbjct: 259 GKSKCKCSKGYQGDLCSKPVCEPG--CGAHGTCHE---PNKCQCQEGWHGRHCNKRYEAS 313
Query: 343 ESSPCVNGG 351
+
Sbjct: 314 LIGTKHHHH 322
Score = 102 bits (256), Expect = 5e-24
Identities = 51/252 (20%), Positives = 75/252 (29%), Gaps = 34/252 (13%)
Query: 468 LCVSNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQ 527
L + + V+ + + D + + N+
Sbjct: 75 LRSLDKGIMADPTVNVPLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTIL 134
Query: 528 CICRDGWEGEICANSNQSGG---------SFKCSCDAGFSGKYCHENINDCKHNPCQNGG 578
++ + C + GG C C GF G +C + C NGG
Sbjct: 135 KTPQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFHGPHCEK---ALCTPRCMNGG 191
Query: 579 TCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTC 638
CV CIC G+ G C C N GTC C+C G +G+ C
Sbjct: 192 LCV---TPGFCICPPGFYGVNCDKA---NCSTTCFNGGTCFY---PGKCICPPGLEGEQC 242
Query: 639 TSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGGTCVNT 698
C++GG C C C ++G C C GTC
Sbjct: 243 EISKCPQP---CRNGGKCIG---KSKCKCSKGYQGDLCSK----PVCEPGCGAHGTCHEP 292
Query: 699 GDLYSCICKEGF 710
C C+EG+
Sbjct: 293 ---NKCQCQEGW 301
Score = 69.1 bits (169), Expect = 7e-13
Identities = 37/153 (24%), Positives = 49/153 (32%), Gaps = 40/153 (26%)
Query: 11 NYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQ 70
+ C NGGTC C CP G G CE+ P PC NGG+C G+
Sbjct: 211 DKANCSTTCFNGGTCFYP----GKCICPPGLEGEQCEISKCPQ---PCRNGGKCI---GK 260
Query: 71 FQCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGTCENTAP 130
+C C+ G+ G C C GTC
Sbjct: 261 SKCKCSKGYQGDLCSKPVC--------------------------EPGCGAHGTCHEP-- 292
Query: 131 DQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQ 163
C C EG+ G +C ++G +
Sbjct: 293 --NKCQCQEGWHGRHCNKRYEASLIGTKHHHHH 323
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 100 bits (252), Expect = 3e-25
Identities = 27/136 (19%), Positives = 43/136 (31%), Gaps = 7/136 (5%)
Query: 227 ECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYR 286
EC+ C + + E D D+C+ +PC+N L C + + Y
Sbjct: 17 ECIEEKCSFEEAREVFEN-----TEKTNEFWKQYVDGDQCEPNPCLNGGL-CKDDINSYE 70
Query: 287 CNCSPGWTGHNCDVNINDCVGQ-CRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESS 345
C C G+ G NC+++ + + C+C GY Q
Sbjct: 71 CWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPF 130
Query: 346 PCVNGGECVDQVNGFR 361
PC R
Sbjct: 131 PCGRVSVSHSPTTLTR 146
Score = 97.8 bits (244), Expect = 4e-24
Identities = 31/144 (21%), Positives = 42/144 (29%), Gaps = 32/144 (22%)
Query: 315 CIDLVNDFHCACL------PGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGF 368
CI+ F A D + CE +PC+NGG C D +N + C C VGF
Sbjct: 18 CIEEKCSFEEAREVFENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGF 77
Query: 369 AGQLCENGGTCVNTGDLYSCICKEGFEGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCEC 428
G+ CE D + LC C
Sbjct: 78 EGKNCE--------------------------LDATCNIKNGRCKQFCKTGADSKVLCSC 111
Query: 429 APGFAGPDCRININECASNPCGYG 452
G+ + + PCG
Sbjct: 112 TTGYRLAPDQKSCKPAVPFPCGRV 135
Score = 95.9 bits (239), Expect = 2e-23
Identities = 25/146 (17%), Positives = 46/146 (31%), Gaps = 17/146 (11%)
Query: 517 GTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQN 576
C+++ SF+ + + + + + C+ NPC N
Sbjct: 16 RECIEEKCSFEEAR-----------------EVFENTEKTNEFWKQYVDGDQCEPNPCLN 58
Query: 577 GGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGK 636
GG C D +NS++C C+ G+EG+ C + N + C C G++
Sbjct: 59 GGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLA 118
Query: 637 TCTSKNGHCDRGTCKHGGTCADLGSS 662
C +
Sbjct: 119 PDQKSCKPAVPFPCGRVSVSHSPTTL 144
Score = 94.0 bits (234), Expect = 9e-23
Identities = 26/131 (19%), Positives = 40/131 (30%), Gaps = 7/131 (5%)
Query: 578 GTCVDKVNSFQCICR------DGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKN 631
C+++ SF+ E + ++CEPNPC N G C D + C C+
Sbjct: 16 RECIEEKCSFEEAREVFENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQV 75
Query: 632 GWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKN 691
G++GK C + S C C + PC
Sbjct: 76 GFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQK-SCKPAVPFPCGR 134
Query: 692 GGTCVNTGDLY 702
+ L
Sbjct: 135 VSVSHSPTTLT 145
Score = 92.0 bits (229), Expect = 4e-22
Identities = 20/134 (14%), Positives = 32/134 (23%), Gaps = 27/134 (20%)
Query: 287 CNCSPGWTGHNCDVNINDCVGQ-CRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESS 345
N V+ + C C +G C D +N + C C G+ G+ C+ D +
Sbjct: 33 ENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKN 92
Query: 346 PCVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVNTGDLYSCICKEGFEGPDCGQDIND 405
+ C C G+ +
Sbjct: 93 GRCKQFCKTGADSKVLCSCT--------------------------TGYRLAPDQKSCKP 126
Query: 406 CSPQPCYNGGKCVD 419
P PC
Sbjct: 127 AVPFPCGRVSVSHS 140
Score = 92.0 bits (229), Expect = 4e-22
Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Query: 222 CDDIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNL 281
D D+C NPC NGG C D ++ Y+C C +EG NC+ DA K+ T
Sbjct: 45 YVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFC-KTGA 103
Query: 282 VGDYRCNCSPGWTGHNCDVNINDCVGQ-CRHGSTCID 317
C+C+ G+ + V C S
Sbjct: 104 DSKVLCSCTTGYRLAPDQKSCKPAVPFPCGRVSVSHS 140
Score = 90.5 bits (225), Expect = 2e-21
Identities = 30/172 (17%), Positives = 46/172 (26%), Gaps = 46/172 (26%)
Query: 351 GECVDQVNGFRCICPVGFAGQLCENGGTCVNTGDLYSCICKEGFEGPDCGQDINDCSPQP 410
EC+++ F V ++ E D + C P P
Sbjct: 16 RECIEEKCSFEEAREV--------------------FENTEKTNEFWKQYVDGDQCEPNP 55
Query: 411 CYNGGKCVDGVNWFLCECAPGFAGPDCRININECASNPCGYGKEILTVQSRSRSPAYLCV 470
C NGG C D +N + C C GF G +C ++ N
Sbjct: 56 CLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQ------------------ 97
Query: 471 SNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDK 522
C + + CSC G+ ++ PC
Sbjct: 98 --------FCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPFPCGRVSVSHSP 141
Score = 83.2 bits (206), Expect = 5e-19
Identities = 29/109 (26%), Positives = 35/109 (32%), Gaps = 11/109 (10%)
Query: 167 TAGQFQCVDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDID 226
Q VD D C PNPCLNG C + Y C C +EGKNC D
Sbjct: 39 NEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCE-----------LDAT 87
Query: 227 ECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAA 275
+ N C CT + + Q PC +
Sbjct: 88 CNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPFPCGRVS 136
Score = 78.5 bits (194), Expect = 2e-17
Identities = 27/150 (18%), Positives = 40/150 (26%), Gaps = 30/150 (20%)
Query: 17 EPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVCA 76
E C E + V + C PC NGG CK+ ++C C
Sbjct: 21 EKCSFEEARE------VFENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQ 74
Query: 77 PGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGTCENTAPDQYLCT 136
G+ G C++ C A + LC+
Sbjct: 75 VGFEGKNCELDAT-----------------------CNIKNGRCKQFCKTG-ADSKVLCS 110
Query: 137 CPEGFSGINCEVVDNPCMMGPCGNGGQCKE 166
C G+ + P + PCG
Sbjct: 111 CTTGYRLAPDQKSCKPAVPFPCGRVSVSHS 140
Score = 77.0 bits (190), Expect = 7e-17
Identities = 21/161 (13%), Positives = 32/161 (19%), Gaps = 49/161 (30%)
Query: 423 WFLCECAPGFAGPDCRININECASNPCGYGKEILTVQSRSRSPAYLCVSNPAYLVARCVS 482
++ ++C NPC G C
Sbjct: 30 EVFENTEKTNEFWKQYVDGDQCEPNPCLNG-------------------------GLCKD 64
Query: 483 QSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANS 542
S++C C GF GK C + N +
Sbjct: 65 D-INSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVL--------------- 108
Query: 543 NQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDK 583
CSC G+ ++ PC
Sbjct: 109 --------CSCTTGYRLAPDQKSCKPAVPFPCGRVSVSHSP 141
Score = 65.1 bits (159), Expect = 1e-12
Identities = 19/105 (18%), Positives = 30/105 (28%), Gaps = 6/105 (5%)
Query: 606 ECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFC 665
EC C + + + C+ C +GG C D +S+ C
Sbjct: 17 ECIEEKCSFEEAR-----EVFENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYEC 71
Query: 666 HCPPDWEGTSCHIGKLNACKSNPCKNGGTCVNTGDLYSCICKEGF 710
C +EG +C + N C C G+
Sbjct: 72 WCQVGFEGKNCEL-DATCNIKNGRCKQFCKTGADSKVLCSCTTGY 115
Score = 64.7 bits (158), Expect = 2e-12
Identities = 29/180 (16%), Positives = 42/180 (23%), Gaps = 55/180 (30%)
Query: 62 GQCKETAGQFQCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQN 121
+C E F+ + T ++ D + C + PC N
Sbjct: 16 RECIEEKCSFEEARE----------------VFENTEKTNEFWKQYVDGDQCEPN-PCLN 58
Query: 122 GGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVDHDHCNP 181
GG C++ + Y C C GF G NCE +D
Sbjct: 59 GGLCKDD-INSYECWCQVGFEGKNCE--------------------------LDATCNIK 91
Query: 182 NPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQNGGTCVD 241
N + C CT + V PC
Sbjct: 92 NGRCKQFCKTGADSKVLCSCTTGYRLAPDQK-----------SCKPAVPFPCGRVSVSHS 140
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 98.6 bits (246), Expect = 4e-24
Identities = 42/179 (23%), Positives = 67/179 (37%), Gaps = 22/179 (12%)
Query: 271 CVNAALGCTNLVGDYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGY 330
+ ++ G C + G C+ H + + + C+ G+
Sbjct: 3 GSHHHHHHGSIEGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYAC----DQNGNKTCMEGW 58
Query: 331 TGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCE--------NGGTCVNT 382
G C I C G C C C G+ G C+ G C
Sbjct: 59 MGPECNRAI--CRQGCSPKHGSCKL---PGDCRCQYGWQGLYCDKCIPHPGCVHGICNEP 113
Query: 383 GDLYSCICKEGFEGPDCGQDINDC-SPQPCYNGGKCVD-GVNWFLCECAPGFAGPDCRI 439
+ C+C+ + G C +D+N C + QPC NGG C + G + + C C G++GP+C I
Sbjct: 114 ---WQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEI 169
Score = 95.1 bits (237), Expect = 8e-23
Identities = 42/183 (22%), Positives = 69/183 (37%), Gaps = 27/183 (14%)
Query: 508 CKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSG----------GSFKCSCDAGF 557
+ + G+ C D + G C + + +C G+
Sbjct: 2 RGSHHHHHHGSIE---GRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGW 58
Query: 558 SGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGT 617
G C+ I G+C C C+ GW+G C ++C P+P +G
Sbjct: 59 MGPECNRAICRQ--GCSPKHGSCKL---PGDCRCQYGWQGLYC----DKCIPHPGCVHGI 109
Query: 618 CIDGHADFTCLCKNGWKGKTCTSKNGHCDRGT-CKHGGTCADLGS-SFFCHCPPDWEGTS 675
C + + CLC+ W G+ C +C C +GGTC++ G + C CP + G +
Sbjct: 110 CNEP---WQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPN 166
Query: 676 CHI 678
C I
Sbjct: 167 CEI 169
Score = 90.1 bits (224), Expect = 4e-21
Identities = 41/198 (20%), Positives = 62/198 (31%), Gaps = 33/198 (16%)
Query: 179 CNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQNGGT 238
+ + + C + + G C+ C G
Sbjct: 2 RGSHHHHHHGSI---EGRSAVTCDDYYYGFGCN--------------KFCRPRDDFFGHY 44
Query: 239 CVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNC 298
D C + W G C SP + C C GW G C
Sbjct: 45 ACD--QNGNKTCMEGWMGPECNRAICRQGCSPKHGSC------KLPGDCRCQYGWQGLYC 96
Query: 299 DVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCES-SPCVNGGECVDQ- 356
D I C + + C C + G+ C D+N C + PC+NGG C +
Sbjct: 97 DKCIPHP---GCVHGICNE---PWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTG 150
Query: 357 VNGFRCICPVGFAGQLCE 374
+ ++C CP G++G CE
Sbjct: 151 PDKYQCSCPEGYSGPNCE 168
Score = 87.4 bits (217), Expect = 3e-20
Identities = 47/173 (27%), Positives = 63/173 (36%), Gaps = 18/173 (10%)
Query: 539 CANSNQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGE 598
+ G +CD + G C+ C+ G D+ C +GW G
Sbjct: 7 HHHHGSIEGRSAVTCDDYYYGFGCN---KFCRPRDDFFGHYACDQNG--NKTCMEGWMGP 61
Query: 599 ICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCAD 658
C N+ C +G+C C C+ GW+G C C G C +
Sbjct: 62 EC--NRAICRQGCSPKHGSCKLP---GDCRCQYGWQGLYCD----KCIPHPGCVHGICNE 112
Query: 659 LGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGGTCVNTG-DLYSCICKEGF 710
+ C C +W G C PC NGGTC NTG D Y C C EG+
Sbjct: 113 ---PWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGY 162
Score = 86.3 bits (214), Expect = 8e-20
Identities = 39/192 (20%), Positives = 61/192 (31%), Gaps = 37/192 (19%)
Query: 118 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCV--- 174
+ G+ E TC + + G C C G + G C+
Sbjct: 6 HHHHHGSIEGR----SAVTCDDYYYGFGCN---KFCRPRDDFFGHYACDQNGNKTCMEGW 58
Query: 175 -----DHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECV 229
+ C C C C W+G C D+C+
Sbjct: 59 MGPECNRAICRQGCSPKHGSCKL---PGDCRCQYGWQGLYC---------------DKCI 100
Query: 230 SNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQ-KSPCVNAALGCTNLVGDYRCN 288
+P G C + ++C C W G C D + C PC+N Y+C+
Sbjct: 101 PHPGCVHGICNE---PWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCS 157
Query: 289 CSPGWTGHNCDV 300
C G++G NC++
Sbjct: 158 CPEGYSGPNCEI 169
Score = 85.5 bits (212), Expect = 1e-19
Identities = 46/230 (20%), Positives = 74/230 (32%), Gaps = 71/230 (30%)
Query: 373 CENGGTCVNTGDLYSCICKEGFEGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCECAPGF 432
+ G+ + C + + G C + C P+ + G D C G+
Sbjct: 7 HHHHGSIEGR---SAVTCDDYYYGFGCNKF---CRPRDDFFGHYACDQNG--NKTCMEGW 58
Query: 433 AGPDCRININECASNPCGYGKEILTVQSRSRSPAYLCVSNPAYLVARCVSQSGGSFKCSC 492
GP+C I +P C C C
Sbjct: 59 MGPECNRAICRQGCSPKH---------------------------GSCKL----PGDCRC 87
Query: 493 DAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCS 552
G+ G YC + C +P G C + ++C
Sbjct: 88 QYGWQGLYC----DKCIPHPGCVHGICNE--------------------------PWQCL 117
Query: 553 CDAGFSGKYCHENINDCK-HNPCQNGGTCVDK-VNSFQCICRDGWEGEIC 600
C+ + G+ C +++N C H PC NGGTC + + +QC C +G+ G C
Sbjct: 118 CETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNC 167
Score = 84.0 bits (208), Expect = 4e-19
Identities = 45/210 (21%), Positives = 69/210 (32%), Gaps = 56/210 (26%)
Query: 342 CESSPCVNGGECVDQVNGFRCICPVGFAGQLCE----------NGGTCVNTGDLYSCICK 391
S + G C + G C C G + C
Sbjct: 2 RGSHHHHHHGSIE---GRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNG---NKTCM 55
Query: 392 EGFEGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININECASNPCGY 451
EG+ GP+C + I C G C + C C G+ G C ++C +P
Sbjct: 56 EGWMGPECNRAI--CRQGCSPKHGSCKLPGD---CRCQYGWQGLYC----DKCIPHPGCV 106
Query: 452 GKEILTVQSRSRSPAYLCVSNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHENINDCK-H 510
C ++C C+ + G+ C +++N C H
Sbjct: 107 H-------------------------GICN----EPWQCLCETNWGGQLCDKDLNYCGTH 137
Query: 511 NPCQNGGTCVDK-VNSFQCICRDGWEGEIC 539
PC NGGTC + + +QC C +G+ G C
Sbjct: 138 QPCLNGGTCSNTGPDKYQCSCPEGYSGPNC 167
Score = 75.1 bits (185), Expect = 7e-16
Identities = 47/245 (19%), Positives = 68/245 (27%), Gaps = 84/245 (34%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVCAP 77
+ G+ E TC + + G C C G C
Sbjct: 6 HHHHHGSIEGR----SAVTCDDYYYGFGCN---KFCRPRDDFFGHYA--CDQNGNKTCME 56
Query: 78 GWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGTCENTAPDQYLCTC 137
GW GP C G+C+ C C
Sbjct: 57 GWMGPECNRAIC-------------------------RQGCSPKHGSCK----LPGDCRC 87
Query: 138 PEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVDHDHCNPNPCLNGAPCFNTQADY 197
G+ G+ C D C P+P C +
Sbjct: 88 QYGWQGLYC------------------------------DKCIPHPGCVHGICNE---PW 114
Query: 198 YCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSN-PCQNGGTCVDL-VDGYKCECTQAWE 255
C C +W G+ C D++ C ++ PC NGGTC + D Y+C C + +
Sbjct: 115 QCLCETNWGGQLCDK-----------DLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYS 163
Query: 256 GSNCQ 260
G NC+
Sbjct: 164 GPNCE 168
Score = 72.4 bits (178), Expect = 5e-15
Identities = 48/131 (36%), Positives = 61/131 (46%), Gaps = 33/131 (25%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVCAP 77
G+C+ C C G+ G+ C + C+ P G C E +QC+C
Sbjct: 72 CSPKHGSCK----LPGDCRCQYGWQGLYC----DKCIPHPGCVHGICNEP---WQCLCET 120
Query: 78 GWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGTCENTAPDQYLCTC 137
W G C DLNYCGTH+PC NGGTC NT PD+Y C+C
Sbjct: 121 NWGGQLCDK----------------------DLNYCGTHQPCLNGGTCSNTGPDKYQCSC 158
Query: 138 PEGFSGINCEV 148
PEG+SG NCE+
Sbjct: 159 PEGYSGPNCEI 169
Score = 61.2 bits (149), Expect = 4e-11
Identities = 46/202 (22%), Positives = 56/202 (27%), Gaps = 66/202 (32%)
Query: 11 NYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQ 70
+C + C+ TC EG+ G C C G G CK
Sbjct: 32 KFCRPRDDFFGHYACDQN----GNKTCMEGWMGPECNR--AICRQGCSPKHGSCKLP--- 82
Query: 71 FQCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGTCENTAP 130
C C GW G C + C H P G C
Sbjct: 83 GDCRCQYGWQGLYC--------------------------DKCIPH-PGCVHGICN---- 111
Query: 131 DQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVDHDHCNPNPCLNGAPC 190
+ + C C + G C+ N C PCLNG C
Sbjct: 112 EPWQCLCETNWGGQLCDKDLNYC-------------------------GTHQPCLNGGTC 146
Query: 191 FNTQADYY-CHCTEDWEGKNCS 211
NT D Y C C E + G NC
Sbjct: 147 SNTGPDKYQCSCPEGYSGPNCE 168
Score = 46.6 bits (111), Expect = 4e-06
Identities = 30/40 (75%), Positives = 35/40 (87%)
Query: 9 DLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEV 48
DLNYCGTH+PC NGGTC NT PD+Y C+CPEG+SG NCE+
Sbjct: 130 DLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEI 169
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 90.1 bits (224), Expect = 2e-21
Identities = 26/144 (18%), Positives = 38/144 (26%), Gaps = 23/144 (15%)
Query: 377 GTCVNTGDLYSCICKE-GFEGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGP 435
C E D + C+ PC NGG C D + ++C C P F G
Sbjct: 20 EQCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 79
Query: 436 DCRININECASNPCGYGKEILTVQSRSRSPAYLCVSNPAYLVARCVSQSGGSFKCSCDAG 495
+C + ++ G C +G C C G
Sbjct: 80 NCETHKDDQLICVNENGGC----------------------EQYCSDHTGTKRSCRCHEG 117
Query: 496 FSGKYCHENINDCKHNPCQNGGTC 519
+S + PC
Sbjct: 118 YSLLADGVSCTPTVEYPCGKIPIL 141
Score = 90.1 bits (224), Expect = 2e-21
Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 27/144 (18%)
Query: 479 RCVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEI 538
+C + + + + + C +PCQNGG+C D++ S+ C C +E
Sbjct: 21 QCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFE--- 77
Query: 539 CANSNQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGT---CVDKVNS-FQCICRDG 594
G+ C + +D +NGG C D + C C +G
Sbjct: 78 --------------------GRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEG 117
Query: 595 WEGEICANNKNECEPNPCKNNGTC 618
+ + PC
Sbjct: 118 YSLLADGVSCTPTVEYPCGKIPIL 141
Score = 87.8 bits (218), Expect = 1e-20
Identities = 29/132 (21%), Positives = 42/132 (31%), Gaps = 23/132 (17%)
Query: 287 CNCSPGWTGHNCDVNINDCVGQ-CRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESS 345
+ + + C C++G +C D + + C CLP + GR C+T +D
Sbjct: 32 KDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLIC 91
Query: 346 PCVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVNTGDLYSCICKEGFEGPDCGQDIND 405
NGG Q C + TG SC C EG+ G
Sbjct: 92 VNENGGCE-----------------QYCSDH-----TGTKRSCRCHEGYSLLADGVSCTP 129
Query: 406 CSPQPCYNGGKC 417
PC
Sbjct: 130 TVEYPCGKIPIL 141
Score = 87.8 bits (218), Expect = 1e-20
Identities = 33/132 (25%), Positives = 46/132 (34%), Gaps = 16/132 (12%)
Query: 189 PCFNTQADYYCHCTEDW-EGKNCSFPRYKCDNPPCDDIDECVSNPCQNGGTCVDLVDGYK 247
C +A E D D+C S+PCQNGG+C D + Y
Sbjct: 21 QCSFEEAREIFKDAERTKLFWIS-----------YSDGDQCASSPCQNGGSCKDQLQSYI 69
Query: 248 CECTQAWEGSNCQYDADECQKSPCVN--AALGCTNLVG-DYRCNCSPGWTGHNCDVNIND 304
C C A+EG NC+ D+ N C++ G C C G++ V+
Sbjct: 70 CFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP 129
Query: 305 CVGQ-CRHGSTC 315
V C
Sbjct: 130 TVEYPCGKIPIL 141
Score = 86.2 bits (214), Expect = 4e-20
Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 4/120 (3%)
Query: 541 NSNQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 600
S + + + + + C +PCQNGG+C D++ S+ C C +EG C
Sbjct: 22 CSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 81
Query: 601 ANNKNECEPNPCKNNGT---CIDG-HADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTC 656
+K++ +N G C D +C C G+ C
Sbjct: 82 ETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPIL 141
Score = 75.8 bits (187), Expect = 2e-16
Identities = 25/112 (22%), Positives = 36/112 (32%), Gaps = 15/112 (13%)
Query: 164 CKETAGQFQCVDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCD 223
+ D D C +PC NG C + Y C C +EG+NC
Sbjct: 35 ERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCET----------- 83
Query: 224 DIDECVSNPCQNGGT---CVDLVD-GYKCECTQAWEGSNCQYDADECQKSPC 271
D+ + +NGG C D C C + + + PC
Sbjct: 84 HKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPC 135
Score = 71.6 bits (176), Expect = 5e-15
Identities = 30/152 (19%), Positives = 42/152 (27%), Gaps = 32/152 (21%)
Query: 16 HEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVC 75
E C E + C PC NGG CK+ + C C
Sbjct: 19 EEQCSFEEARE------IFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFC 72
Query: 76 APGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGT---CENTAPDQ 132
P + G C+ + +NGG C + +
Sbjct: 73 LPAFEGRNCET----------------------HKDDQLIC-VNENGGCEQYCSDHTGTK 109
Query: 133 YLCTCPEGFSGINCEVVDNPCMMGPCGNGGQC 164
C C EG+S + V P + PCG
Sbjct: 110 RSCRCHEGYSLLADGVSCTPTVEYPCGKIPIL 141
Score = 57.3 bits (139), Expect = 6e-10
Identities = 33/184 (17%), Positives = 45/184 (24%), Gaps = 57/184 (30%)
Query: 56 GPCGNGGQCKETAGQFQCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGT 115
C E A + D + C +
Sbjct: 15 RECKEEQCSFEEAREIFKDAERTKLFWISYS----------------------DGDQCAS 52
Query: 116 HEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVD 175
PCQNGG+C++ Y+C C F G NCE + ++ NGG + C D
Sbjct: 53 S-PCQNGGSCKDQ-LQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQ------YCSD 104
Query: 176 HDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQN 235
H T C C E + V PC
Sbjct: 105 H----------------TGTKRSCRCHEGYSLLADGV-----------SCTPTVEYPCGK 137
Query: 236 GGTC 239
Sbjct: 138 IPIL 141
Score = 57.0 bits (138), Expect = 6e-10
Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 28/113 (24%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCK----ETAGQFQC 73
PCQNGG+C++ Y+C C F G NCE + ++ NGG + T + C
Sbjct: 54 PCQNGGSCKDQ-LQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSC 112
Query: 74 VCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGTCE 126
C G++ + + PC E
Sbjct: 113 RCHEGYSLLADGV----------------------SCTPTVEY-PCGKIPILE 142
Score = 57.0 bits (138), Expect = 7e-10
Identities = 26/102 (25%), Positives = 36/102 (35%), Gaps = 6/102 (5%)
Query: 614 NNGTCIDGHADFTCLCK-NGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWE 672
C A S C C++GG+C D S+ C C P +E
Sbjct: 18 KEEQCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFE 77
Query: 673 GTSCHIGKLNACKSNPCKNGGTCV----NTGDLYSCICKEGF 710
G +C + +NGG +TG SC C EG+
Sbjct: 78 GRNCET-HKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGY 118
Score = 45.8 bits (109), Expect = 5e-06
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 641 KNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGGTCVNTGD 700
+ G +R CK C+ + + + C S+PC+NGG+C +
Sbjct: 9 RPGSLER-ECKEE-QCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQ 66
Query: 701 LYSCICKEGF 710
Y C C F
Sbjct: 67 SYICFCLPAF 76
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 87.5 bits (216), Expect = 5e-18
Identities = 56/328 (17%), Positives = 79/328 (24%), Gaps = 35/328 (10%)
Query: 114 GTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQC 173
G Q G C+ + T + C + + + Q +C
Sbjct: 367 GVTHRNQPRGDCDGVQINVP-ITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCEC 425
Query: 174 VDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDD--IDECVSN 231
D +G C C + GKNC + + + S
Sbjct: 426 RCRDQSRDRSLCHGKGFLECGI---CRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSI 482
Query: 232 PCQNGGTCVDLVDGYK--CECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNC 289
C G CV + G C+ D C++ L +C C
Sbjct: 483 ICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRC 542
Query: 290 SPGWTGHNCDVNINDCVGQCRHGSTCID--LVNDFHCACLPGYTGRTCQTDINDCESSPC 347
PG+ G C C C C GY CQ SPC
Sbjct: 543 HPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLPLCQE--CPGCPSPC 600
Query: 348 VNGGECVDQVNGFRCICPVGFAGQLCE-------------NGGTCVNTGDLYSCICKEGF 394
C + G G+ C G TC S C +
Sbjct: 601 GKYISCAE-----CLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERD---SEGCWVAY 652
Query: 395 EGPDCGQDINDCSPQPCYNGGKCVDGVN 422
D D +CV G +
Sbjct: 653 TLEQQ--DGMDRYLIYVDESRECVAGPD 678
Score = 81.7 bits (201), Expect = 3e-16
Identities = 58/395 (14%), Positives = 85/395 (21%), Gaps = 73/395 (18%)
Query: 19 CQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVCAPG 78
C NG T +Q C + G V
Sbjct: 364 CSNGVTH----RNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQV 419
Query: 79 WTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGTCENTAPDQYLCTCP 138
C+ + C G E C C
Sbjct: 420 LPQCECRCRDQ-----------------------SRDRSLCHGKGFLECGI-----CRCD 451
Query: 139 EGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVDHDHCNPNPCLNGAPCFNTQADYY 198
G+ G NCE G C++ C C CL C +
Sbjct: 452 TGYIGKNCEC--QTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCL----CHTS----- 500
Query: 199 CHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSN 258
+ G+ C C+ G C KC C +EGS
Sbjct: 501 DVPGKLIYGQYCECDTINCER------YNGQVCGGPGRGLCFC----GKCRCHPGFEGSA 550
Query: 259 CQYDADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDL 318
CQ + C C G+ C C C +C +
Sbjct: 551 CQCERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLPLCQEC-PGCPSPCGKYISCAEC 609
Query: 319 VNDFHCACLPGYTGRTCQTD-INDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGG 377
G G+ C S+ V G C ++ + C V + + +
Sbjct: 610 -----LKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDS---EGCWVAYTLEQQDGMD 661
Query: 378 TCVNTGDLYSCICKEGFEGPDCGQDINDCSPQPCY 412
E +C + C +
Sbjct: 662 ----------RYLIYVDESRECVAGPDGCGENLYF 686
Score = 79.8 bits (196), Expect = 1e-15
Identities = 45/320 (14%), Positives = 85/320 (26%), Gaps = 48/320 (15%)
Query: 340 NDCESSPCVNGGECVDQVNGFRCICPVGF-AGQLCENGGTCVNTGDLYSCICKEGFEGPD 398
++ + G+C V A + + + + + +
Sbjct: 365 SNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCE 424
Query: 399 CGQDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININECASNPCGYGKEILTV 458
C C+ G G+ C C G+ G +C +S
Sbjct: 425 CRCRDQSRDRSLCHGKGFLECGI----CRCDTGYIGKNCECQTQGRSSQEL-------EG 473
Query: 459 QSRSRSPAYLCVSNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHENINDCKH---NPCQN 515
R + + +C + +C+ + G+YC + +C+ C
Sbjct: 474 SCRKDNNSIICSGLGDCVCGQCLCHTS----DVPGKLIYGQYCECDTINCERYNGQVCGG 529
Query: 516 GGTCVDKVNSFQCICRDGWEGEICANSNQSGG----------------SFKCSCDAGFSG 559
G + +C C G+EG C + G C C +G+
Sbjct: 530 PGRGLCFCG--KCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQL 587
Query: 560 KYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC-ANNKNECEPNPCKNNGTC 618
C +PC +C + G G+ C A N TC
Sbjct: 588 PLC--QECPGCPSPCGKYISCAE-----CLKFEKGPFGKNCSAACPGLQLSNNPVKGRTC 640
Query: 619 IDGHADFTCLCKNGWKGKTC 638
+ + C + +
Sbjct: 641 KERD---SEGCWVAYTLEQQ 657
Score = 77.8 bits (191), Expect = 5e-15
Identities = 52/334 (15%), Positives = 74/334 (22%), Gaps = 48/334 (14%)
Query: 386 YSCICKEGFEGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININECA 445
Y C G + + C V I
Sbjct: 360 YDSFCSNGVTHRNQPRGD-------CDGVQINVPITFQVKVTATECIQEQSFVIRALGFT 412
Query: 446 SNPCGYGKEILTVQSRSRSPAYLCVSNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHENI 505
+ R +S +L C CD G+ GK C
Sbjct: 413 DIVTVQVLPQCECRCRDQSRDRSLCHGKGFLE---------CGICRCDTGYIGKNCECQT 463
Query: 506 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHEN 565
+ G+C NS C C G+YC +
Sbjct: 464 QGRSSQELE--GSCRKDNNSIICSGLGDCVCGQCLCHTS------DVPGKLIYGQYCECD 515
Query: 566 INDCKH---NPCQNGGTCVDKVNSFQCICRDGWEGE-----ICANNKNECEPNPCKNNGT 617
+C+ C G + +C C G+EG C G
Sbjct: 516 TINCERYNGQVCGGPGRGLCFCG--KCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGR 573
Query: 618 CIDGHADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCH 677
C C C +G++ C C +CA+ G +C
Sbjct: 574 CRCN----VCECHSGYQLPLCQE--CPGCPSPCGKYISCAEC-----LKFEKGPFGKNCS 622
Query: 678 IGKLNACKSNPCKNGGTCVNTGDLYSCICKEGFV 711
SN G TC S C +
Sbjct: 623 AACPGLQLSNNPVKGRTCKERD---SEGCWVAYT 653
Score = 75.1 bits (184), Expect = 3e-14
Identities = 56/352 (15%), Positives = 85/352 (24%), Gaps = 66/352 (18%)
Query: 286 RCNCSPGWTGHNCDVNIN-DCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCES 344
R +C + + S I + + C+ +
Sbjct: 375 RGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDR 434
Query: 345 SPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVNTGDLYSCICKEGFEGPDCGQDIN 404
S C G + C C G+ G+ CE C + G
Sbjct: 435 SLCHGKGFLECGI----CRCDTGYIGKNCE-------------CQTQGRSSQELEGSCRK 477
Query: 405 DCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRI-NINECASNPCGYGKEILTVQSRSR 463
D + C G CV G C C EC + C +
Sbjct: 478 DNNSIICSGLGDCVCGQ----CLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGP--- 530
Query: 464 SPAYLCVSNPAYLVARCVSQSGGSFKCSCDAGFSGKYC-----HENINDCKHNPCQNGGT 518
R + G KC C GF G C E + + C G
Sbjct: 531 --------------GRGLCFCG---KCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGR 573
Query: 519 CVDKVNSFQCICRDGWEGEICANSNQSGGSFK--------CSCDAGFSGKYCHEN-INDC 569
C C C G++ +C + G GK C
Sbjct: 574 CRC----NVCECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQ 629
Query: 570 KHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDG 621
N G TC ++ + C + E + + + C+ G
Sbjct: 630 LSNNPVKGRTCKERDS---EGCWVAYTLEQQ--DGMDRYLIYVDESRECVAG 676
Score = 51.6 bits (123), Expect = 7e-07
Identities = 56/354 (15%), Positives = 73/354 (20%), Gaps = 100/354 (28%)
Query: 13 CGTHEPCQNGGTC-ENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQF 71
C + ++ C + +C C G+ G NCE
Sbjct: 425 CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQEL------------- 471
Query: 72 QCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNG-GTCENTAP 130
+ C C C G C +
Sbjct: 472 EGSCRKDNNSII-----------------------------CSGLGDCVCGQCLCHTS-- 500
Query: 131 DQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVDHDHCNPNPCLNGAPC 190
+ G CE C NG C C G
Sbjct: 501 ----DVPGKLIYGQYCECDTINC---ERYNGQ---------VCGGPGRGL---CFCGK-- 539
Query: 191 FNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQNGGTCVDLVDGYKCEC 250
C C +EG C C + C G C CEC
Sbjct: 540 --------CRCHPGFEGSACQCE---RTTEGCLNPRRV---ECSGRGRCRC----NVCEC 581
Query: 251 TQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNIND--CVGQ 308
++ CQ SPC + G G NC
Sbjct: 582 HSGYQLPLCQE--CPGCPSPCGK------YISCAECLKFEKGPFGKNCSAACPGLQLSNN 633
Query: 309 CRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRC 362
G TC + + C YT D D ECV +G
Sbjct: 634 PVKGRTCKERDS---EGCWVAYTLEQQ--DGMDRYLIYVDESRECVAGPDGCGE 682
Score = 49.7 bits (118), Expect = 3e-06
Identities = 27/201 (13%), Positives = 43/201 (21%), Gaps = 28/201 (13%)
Query: 525 SFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKV 584
++ C +G + CD + Q + +
Sbjct: 359 TYDSFCSNGVTHRNQP---------RGDCDGVQINVPITFQVKVTATECIQEQSFVIRAL 409
Query: 585 NSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCTSKNGH 644
+ C + + C G G C C G+ GK C +
Sbjct: 410 GFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECG----ICRCDTGYIGKNCECQTQG 465
Query: 645 CDRGTCKHGGTCADLGS---------SFFCHCPPDWEGTSCHIGKLNACKSN--PCKNGG 693
+ + C C G+ C + NG
Sbjct: 466 RSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQ 525
Query: 694 TCVNTG----DLYSCICKEGF 710
C G C C GF
Sbjct: 526 VCGGPGRGLCFCGKCRCHPGF 546
Score = 32.0 bits (72), Expect = 0.86
Identities = 14/86 (16%), Positives = 21/86 (24%), Gaps = 16/86 (18%)
Query: 11 NYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCE-VVDNPCMMGPCGNGGQCKETAG 69
+ CG + C +G G NC + G CKE
Sbjct: 598 SPCGKYISCAEC------------LKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDS 645
Query: 70 QFQCVCAPGWTGPTCKIKHNFFPYLQ 95
C +T + Y+
Sbjct: 646 ---EGCWVAYTLEQQDGMDRYLIYVD 668
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 77.1 bits (190), Expect = 3e-17
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 345 SPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVNTGDLYSCICKEGFEGPDCGQDIN 404
S V+G +C+ C C GTC++ +SC C+ G+EG C ++++
Sbjct: 1 SKHVDGDQCLVLPLEHPCASL-------CCGHGTCIDGIGSFSCDCRSGWEGRFCQREVS 53
Query: 405 --DCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININECASNPCG 450
+CS C++ V W C CAPG+ D + + PCG
Sbjct: 54 FLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCG 101
Score = 75.1 bits (185), Expect = 1e-16
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 21/117 (17%)
Query: 504 NINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCH 563
+ + C GTC+D + SF C CR GWEG C
Sbjct: 13 PLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQR---------------------E 51
Query: 564 ENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCID 620
+ +C + C+++V +C C G++ + PC ++
Sbjct: 52 VSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRME 108
Score = 73.2 bits (180), Expect = 6e-16
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 4/97 (4%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNINDC---VGQCRHGSTCIDL 318
+ S C C + +G + C+C GW G C ++ + C++
Sbjct: 13 PLEHPCASLCCGHGT-CIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEE 71
Query: 319 VNDFHCACLPGYTGRTCQTDINDCESSPCVNGGECVD 355
V C+C PGY + PC + ++
Sbjct: 72 VGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRME 108
Score = 70.1 bits (172), Expect = 9e-15
Identities = 26/127 (20%), Positives = 38/127 (29%), Gaps = 26/127 (20%)
Query: 295 GHNCDVNIND--CVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGGE 352
G C V + C C TCID + F C C G+ GR CQ +++ S
Sbjct: 6 GDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLD----- 60
Query: 353 CVDQVNGFRCICPVGFAGQLCENGGTCVNTGDLYSCICKEGFEGPDCGQDINDCSPQPCY 412
C+ C C G++ D + PC
Sbjct: 61 -------------------NGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCG 101
Query: 413 NGGKCVD 419
K ++
Sbjct: 102 RPWKRME 108
Score = 69.7 bits (171), Expect = 1e-14
Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 9/102 (8%)
Query: 172 QCVDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSN 231
+ +H + C C + + C C WEG+ C C +
Sbjct: 10 LVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQR---------EVSFLNCSLD 60
Query: 232 PCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVN 273
C++ V +C C ++ + K PC
Sbjct: 61 NGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGR 102
Score = 61.7 bits (150), Expect = 7e-12
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
Query: 602 NNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCTSK--NGHCDRGTCKHGGTCADL 659
+ C +GTCIDG F+C C++GW+G+ C + +C C +
Sbjct: 12 LPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEE 71
Query: 660 GSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGGTCVN 697
C C P ++ + + + PC +
Sbjct: 72 VGWRRCSCAPGYKLGDDLL-QCHPAVKFPCGRPWKRME 108
Score = 61.3 bits (149), Expect = 1e-11
Identities = 23/127 (18%), Positives = 39/127 (30%), Gaps = 28/127 (22%)
Query: 401 QDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCR--ININECASNPCGYGKEILTV 458
+ C G C+DG+ F C+C G+ G C+ ++ C+ + G
Sbjct: 12 LPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCT------ 65
Query: 459 QSRSRSPAYLCVSNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGT 518
C+ G +CSC G+ + PC
Sbjct: 66 -------------------HYCLE-EVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWK 105
Query: 519 CVDKVNS 525
++K S
Sbjct: 106 RMEKKRS 112
Score = 58.2 bits (141), Expect = 1e-10
Identities = 17/129 (13%), Positives = 30/129 (23%), Gaps = 36/129 (27%)
Query: 113 CGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQ 172
C GTC + + C C G+ G C+ +
Sbjct: 16 HPCASLCCGHGTCIDG-IGSFSCDCRSGWEGRFCQ------------------------R 50
Query: 173 CVDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNP 232
V +C+ + C C C ++ + V P
Sbjct: 51 EVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLL-----------QCHPAVKFP 99
Query: 233 CQNGGTCVD 241
C ++
Sbjct: 100 CGRPWKRME 108
Score = 55.9 bits (135), Expect = 9e-10
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 13 CGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCE--VVDNPCMMGPCGNGGQCKETAGQ 70
C GTC + + C C G+ G C+ V C + G C E G
Sbjct: 16 HPCASLCCGHGTCIDG-IGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGW 74
Query: 71 FQCVCAPGWTGPTCKI 86
+C CAPG+ +
Sbjct: 75 RRCSCAPGYKLGDDLL 90
Score = 53.9 bits (130), Expect = 4e-09
Identities = 22/117 (18%), Positives = 34/117 (29%), Gaps = 22/117 (18%)
Query: 50 DNPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSD 109
C G C + G F C C GW G C+ + +F
Sbjct: 14 LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSF------------------- 54
Query: 110 LNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKE 166
C + C C+C G+ + + +P + PCG + E
Sbjct: 55 -LNCSL-DNGGCTHYCLEE-VGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRME 108
Score = 52.8 bits (127), Expect = 1e-08
Identities = 21/78 (26%), Positives = 24/78 (30%), Gaps = 2/78 (2%)
Query: 635 GKTCTSKNG-HCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGK-LNACKSNPCKNG 692
G C H C GTC D SF C C WEG C C +
Sbjct: 6 GDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCT 65
Query: 693 GTCVNTGDLYSCICKEGF 710
C+ C C G+
Sbjct: 66 HYCLEEVGWRRCSCAPGY 83
Score = 38.2 bits (89), Expect = 0.001
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 17 EPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKE 66
+ C C+C G+ + + +P + PCG + E
Sbjct: 60 DNGGCTHYCLEE-VGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRME 108
Score = 33.5 bits (77), Expect = 0.062
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 672 EGTSCHIGKLNACKSNPCKNGGTCVNTGDLYSCICKEGF 710
+G C + L ++ C GTC++ +SC C+ G+
Sbjct: 5 DGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGW 43
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 73.9 bits (182), Expect = 1e-15
Identities = 40/160 (25%), Positives = 56/160 (35%), Gaps = 18/160 (11%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVG 283
DIDEC S+PC NG C + + CEC+ + E K C + G
Sbjct: 3 DIDECESSPCING-VCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVID-----G 56
Query: 284 DYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQT--DIND 341
N + C ++ G + C GY+ DI++
Sbjct: 57 RCEININGATLKSQCCSSLGAAWG-------SPCTLCQVDPICGKGYSRIKGTQCEDIDE 109
Query: 342 CESSPCV-NGGECVDQVNGFRCICPVGFAGQLCENGGTCV 380
CE P V G CV+ F+C CP G G C+
Sbjct: 110 CEVFPGVCKNGLCVNTRGSFKCQCPSGMTLD--ATGRICL 147
Score = 60.8 bits (148), Expect = 3e-11
Identities = 25/118 (21%), Positives = 38/118 (32%), Gaps = 6/118 (5%)
Query: 486 GSFKCSCDAGFSGKYCHENINDCKHNPCQNG---GTCVDKVNSFQCICRDGWEGEICANS 542
GSF C C + + + C G C +N + S
Sbjct: 22 GSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGATLKSQCCSSLGAAWGS 81
Query: 543 NQSGGSFKCSCDAGFSGKYCH--ENINDCKHNPCQ-NGGTCVDKVNSFQCICRDGWEG 597
+ C G+S E+I++C+ P G CV+ SF+C C G
Sbjct: 82 PCTLCQVDPICGKGYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTL 139
Score = 60.4 bits (147), Expect = 5e-11
Identities = 36/156 (23%), Positives = 46/156 (29%), Gaps = 32/156 (20%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVND 321
D DEC+ SPC+N C N G + C CS T + + TC V D
Sbjct: 3 DIDECESSPCINGV--CKNSPGSFICECSSESTLDPTKTICIETI-----KGTCWQTVID 55
Query: 322 FHCACLPGY--TGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCEN---- 375
C C + + SPC IC G++
Sbjct: 56 GRCEININGATLKSQCCSSLGAAWGSPCTLC--------QVDPICGKGYSRIKGTQCEDI 107
Query: 376 -----------GGTCVNTGDLYSCICKEGFEGPDCG 400
G CVNT + C C G G
Sbjct: 108 DECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATG 143
Score = 55.8 bits (135), Expect = 2e-09
Identities = 30/145 (20%), Positives = 49/145 (33%), Gaps = 23/145 (15%)
Query: 505 INDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANS---------NQSGGSFKCSCDA 555
I++C+ +PC NG C + SF C C + Q+ +C +
Sbjct: 4 IDECESSPCING-VCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEINI 62
Query: 556 GFS--GKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICAN--NKNECEPNP 611
+ C ++ +PC IC G+ + +ECE P
Sbjct: 63 NGATLKSQCCSSLGAAWGSPCTLC--------QVDPICGKGYSRIKGTQCEDIDECEVFP 114
Query: 612 CK-NNGTCIDGHADFTCLCKNGWKG 635
NG C++ F C C +G
Sbjct: 115 GVCKNGLCVNTRGSFKCQCPSGMTL 139
Score = 55.0 bits (133), Expect = 3e-09
Identities = 24/163 (14%), Positives = 39/163 (23%), Gaps = 41/163 (25%)
Query: 377 GTCVNTGDLYSCICKEGFEGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPD 436
G C N+ + C C + C+
Sbjct: 15 GVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVID----GRCEININGATLKSQ 70
Query: 437 CRININECASNPCGYGKEILTVQSRSRSPAYLCVSNPAYLVARCVSQSGGSFKCSCDAGF 496
C ++ +PC + C G+
Sbjct: 71 CCSSLGAAWGSPC----------------------------------TLCQVDPICGKGY 96
Query: 497 SGKYCH--ENINDCKHNPCQ-NGGTCVDKVNSFQCICRDGWEG 536
S E+I++C+ P G CV+ SF+C C G
Sbjct: 97 SRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTL 139
Score = 54.3 bits (131), Expect = 6e-09
Identities = 28/147 (19%), Positives = 40/147 (27%), Gaps = 15/147 (10%)
Query: 566 INDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADF 625
I++C+ +PC NG C + SF C C + E C
Sbjct: 4 IDECESSPCING-VCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTV----IDGRC 58
Query: 626 TCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGK-LNAC 684
C S G C C + + ++ C
Sbjct: 59 EININGATLKSQCCSSLGAAWGSPCTLC--------QVDPICGKGYSRIKGTQCEDIDEC 110
Query: 685 KSNPCK-NGGTCVNTGDLYSCICKEGF 710
+ P G CVNT + C C G
Sbjct: 111 EVFPGVCKNGLCVNTRGSFKCQCPSGM 137
Score = 54.3 bits (131), Expect = 6e-09
Identities = 28/162 (17%), Positives = 45/162 (27%), Gaps = 29/162 (17%)
Query: 175 DHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQ 234
D D C +PC+NG C N+ + C C+ + C + +
Sbjct: 3 DIDECESSPCINGV-CKNSPGSFICECSSESTLDPTKT--------ICIETIKGTCWQTV 53
Query: 235 NGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNCSPGWT 294
G C + A S C G + C G++
Sbjct: 54 IDGRC-------EININGATLKSQCCSSLGAAW---------GSPCTLCQVDPICGKGYS 97
Query: 295 GHNCD--VNINDCVGQ--CRHGSTCIDLVNDFHCACLPGYTG 332
+I++C C++ F C C G T
Sbjct: 98 RIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTL 139
Score = 53.1 bits (128), Expect = 2e-08
Identities = 28/144 (19%), Positives = 46/144 (31%), Gaps = 18/144 (12%)
Query: 118 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNG---GQCKETAGQFQCV 174
PC NG C+N+ P ++C C + + + + G C G+C+
Sbjct: 11 PCING-VCKNS-PGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGATLK 68
Query: 175 DHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQ 234
+ T C + + + C+DIDEC P
Sbjct: 69 SQCCSSLGAAWG---SPCTLCQVDPICGKGYSRIKGT---------QCEDIDECEVFPGV 116
Query: 235 -NGGTCVDLVDGYKCECTQAWEGS 257
G CV+ +KC+C
Sbjct: 117 CKNGLCVNTRGSFKCQCPSGMTLD 140
Score = 31.9 bits (73), Expect = 0.26
Identities = 27/162 (16%), Positives = 45/162 (27%), Gaps = 45/162 (27%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVCAP 77
PC NG C+N+ P ++C C + + + + G C +C
Sbjct: 11 PCING-VCKNS-PGSFICECSSESTLDPTKTICIETIKGTCWQTV------IDGRCEINI 62
Query: 78 GWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGTCENTA--PDQYLC 135
+ C + G + Q
Sbjct: 63 N--------------------------------GATLKSQCCSSLGAAWGSPCTLCQVDP 90
Query: 136 TCPEGFSGINCEVVD--NPCMMGPCG-NGGQCKETAGQFQCV 174
C +G+S I + + C + P G C T G F+C
Sbjct: 91 ICGKGYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQ 132
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 77.1 bits (189), Expect = 4e-15
Identities = 51/295 (17%), Positives = 76/295 (25%), Gaps = 58/295 (19%)
Query: 13 CGTHEPCQNGGTCENTA-PDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQF 71
G + GG +A + C G C + C N G C E G
Sbjct: 164 AGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECN-----HLCTACMNNGVCHEDTG-- 216
Query: 72 QCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGTCENTAPD 131
+C+C PG+ G TC+ + + + C E C++ C PD
Sbjct: 217 ECICPPGFMGRTCEKACELHTFGR------------TCKERCSGQEGCKSYVFCL---PD 261
Query: 132 QYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVDHDHCNPNPCLNGAPCF 191
Y C+C G+ G+ C +P GP D C NG C
Sbjct: 262 PYGCSCATGWKGLQCNEACHPGFYGP-------------------DCKLRCSCNNGEMCD 302
Query: 192 NTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQNGGTCVDLVDGYKCECT 251
C C+ W+G C P + C
Sbjct: 303 R---FQGCLCSPGWQGLQCEREGIPRMTPKI----------VDLPDHIEVNSGKFNPICK 349
Query: 252 -QAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNINDC 305
W + ++ N + D + C
Sbjct: 350 ASGWPLPTNEEMTLVKPDGTVLHP--KDFNHTDHFSVAIFTIHRILPPDSGVWVC 402
Score = 76.7 bits (188), Expect = 6e-15
Identities = 49/340 (14%), Positives = 75/340 (22%), Gaps = 62/340 (18%)
Query: 13 CGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEV----VDNPCMMGPCGNGGQCKETA 68
+ + E + + + + GG +A
Sbjct: 121 FKKVLIKEEDAVIYKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSA 180
Query: 69 --GQFQCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGTCE 126
C GP C C N G C
Sbjct: 181 FTRLIVRRCEAQKWGPECN----------------------------HLCTACMNNGVCH 212
Query: 127 NTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVDHDHCNPNPCLN 186
D C CP GF G CE G C +
Sbjct: 213 ---EDTGECICPPGFMGRTCEKACELHTFGRTCKERC---------------SGQEGCKS 254
Query: 187 GAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQNGGTCVDLVDGY 246
C Y C C W+G C+ + P D + C NG C
Sbjct: 255 YVFC--LPDPYGCSCATGWKGLQCNEACHPGFYGP----DCKLRCSCNNGEMC---DRFQ 305
Query: 247 KCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNC-SPGWTGHNCDVNINDC 305
C C+ W+G C+ + V+ G + C + GW +
Sbjct: 306 GCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEMTLVK 365
Query: 306 VGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESS 345
+ + F A + + + C +
Sbjct: 366 PDGTVLHPKDFNHTDHFSVAIFTIHRILPPDSGVWVCSVN 405
Score = 74.7 bits (183), Expect = 3e-14
Identities = 54/293 (18%), Positives = 78/293 (26%), Gaps = 33/293 (11%)
Query: 380 VNTGDLYSCICKEGFEGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRI 439
V+ GD + K+ + + S + D + L P AG
Sbjct: 111 VDKGDNVNISFKKVLIKEEDAVIYKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSAR 170
Query: 440 NINECASNPCGYGKEILTVQSRSRSPAYLCVSNPAYLVARCVSQSGGSFKCSCDAGFSGK 499
I + +++ P + C +G +C C GF G+
Sbjct: 171 YIGGNLFTSAFTRLIVRRCEAQKWGPECNHLCTACMNNGVCHEDTG---ECICPPGFMGR 227
Query: 500 YCHENINDCKH-----NPCQNGGTCVDKV----NSFQCICRDGWEGEICANSNQSGGSFK 550
C + C C V + + C C GW+G C
Sbjct: 228 TCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQC----------N 277
Query: 551 CSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICAN-NKNECEP 609
+C GF G C C NG C C+C GW+G C P
Sbjct: 278 EACHPGFYGPDCKLRC------SCNNGEMCD---RFQGCLCSPGWQGLQCEREGIPRMTP 328
Query: 610 NPCKNNGTCIDGHADFTCLCK-NGWKGKTCTSKNGHCDRGTCKHGGTCADLGS 661
F +CK +GW T GT H
Sbjct: 329 KIVDLPDHIEVNSGKFNPICKASGWPLPTNEEMTLVKPDGTVLHPKDFNHTDH 381
Score = 72.8 bits (178), Expect = 1e-13
Identities = 42/295 (14%), Positives = 70/295 (23%), Gaps = 66/295 (22%)
Query: 172 QCVDHDHCNPNPCLNGAPCFNT--QADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECV 229
D + G F + C G C +
Sbjct: 158 HAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPEC----------------NHL 201
Query: 230 SNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTN--------L 281
C N G C + D +C C + G C+ + L
Sbjct: 202 CTACMNNGVCHE--DTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCL 259
Query: 282 VGDYRCNCSPGWTGHNCDVNINDC--------VGQCRHGSTCIDLVNDFHCACLPGYTGR 333
Y C+C+ GW G C+ + C +G C C C PG+ G
Sbjct: 260 PDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMC---DRFQGCLCSPGWQGL 316
Query: 334 TCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVNTGDLYSCICK-E 392
C+ + ++ + ++ ICK
Sbjct: 317 QCERE-------------------------GIPRMTPKIVDLPDHIEVNSGKFNPICKAS 351
Query: 393 GFEGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININECASN 447
G+ P + + P K + + F + C+ N
Sbjct: 352 GWPLPTNEE-MTLVKPDGTVLHPKDFNHTDHFSVAIFTIHRILPPDSGVWVCSVN 405
Score = 70.9 bits (173), Expect = 5e-13
Identities = 44/236 (18%), Positives = 67/236 (28%), Gaps = 35/236 (14%)
Query: 480 CVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 539
S C+A G C + C N G C + ++ +CIC G+ G C
Sbjct: 177 FTSAFTRLIVRRCEAQKWGPEC-----NHLCTACMNNGVCHE--DTGECICPPGFMGRTC 229
Query: 540 ANSNQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEI 599
+ C+ G+ C E C++ C+ + + C C GW+G
Sbjct: 230 EKA----------CELHTFGRTCKER--CSGQEGCKSYVFCLP--DPYGCSCATGWKGLQ 275
Query: 600 CANNKNEC-------EPNPCKNNGTCIDGHADFTCLCKNGWKGKTC-TSKNGHCDRGTCK 651
C + C N C CLC GW+G C
Sbjct: 276 CNEACHPGFYGPDCKLRCSCNNGEMC---DRFQGCLCSPGWQGLQCEREGIPRMTPKIVD 332
Query: 652 HGGTCADLGSSFFCHCPPD-WEGTSCHIGKLNACKSNPCKNGGTCVNTGDLYSCIC 706
F C W + ++ K + N D +S
Sbjct: 333 LPDHIEVNSGKFNPICKASGWPLPTN--EEMTLVKPDGTVLHPKDFNHTDHFSVAI 386
Score = 66.7 bits (162), Expect = 8e-12
Identities = 49/291 (16%), Positives = 73/291 (25%), Gaps = 52/291 (17%)
Query: 345 SPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVNTG--DLYSCICKEGFEGPDCGQD 402
S + + +V+ GG + L C+ GP+C
Sbjct: 142 SVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPEC--- 198
Query: 403 INDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININECASNPCGYGKEILTVQSRS 462
+ C N G C + C C PGF G C
Sbjct: 199 --NHLCTACMNNGVCHEDTG--ECICPPGFMGRTCEKACELHTFGRT------------- 241
Query: 463 RSPAYLCVSNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHENINDCKHNP-------CQN 515
C+ G CSC G+ G C+E + + P C N
Sbjct: 242 -CKERCSGQEGCKSYVFCLPDPYG---CSCATGWKGLQCNEACHPGFYGPDCKLRCSCNN 297
Query: 516 GGTCVDKVNSFQCICRDGWEGEIC----------------ANSNQSGGSFKCSCDAGFSG 559
G C C+C GW+G C + + G F C A
Sbjct: 298 GEMCD---RFQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWP 354
Query: 560 KYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPN 610
+E + K + + + F + C N
Sbjct: 355 LPTNEEMTLVKPDGTVLHPKDFNHTDHFSVAIFTIHRILPPDSGVWVCSVN 405
Score = 55.9 bits (134), Expect = 2e-08
Identities = 37/204 (18%), Positives = 55/204 (26%), Gaps = 28/204 (13%)
Query: 525 SFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHENINDC-KHNPCQNGGTCVD- 582
SF+ + + I N + + H D ++ GG
Sbjct: 120 SFKKVLIKEEDAVIYKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTS 179
Query: 583 -KVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTC--- 638
C G C C NNG C + C+C G+ G+TC
Sbjct: 180 AFTRLIVRRCEAQKWGPEC-----NHLCTACMNNGVCHED--TGECICPPGFMGRTCEKA 232
Query: 639 --TSKNGHCDRGTCKHGGTCADLGS----SFFCHCPPDWEGTSCHIG------KLNACKS 686
G + C C + C C W+G C+ +
Sbjct: 233 CELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLR 292
Query: 687 NPCKNGGTCVNTGDLYSCICKEGF 710
C NG C C+C G+
Sbjct: 293 CSCNNGEMCDRF---QGCLCSPGW 313
Score = 49.7 bits (118), Expect = 2e-06
Identities = 33/164 (20%), Positives = 48/164 (29%), Gaps = 35/164 (21%)
Query: 11 NYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGP-------CGNGGQ 63
C E C++ C PD Y C+C G+ G+ C +P GP C NG
Sbjct: 244 ERCSGQEGCKSYVFCL---PDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEM 300
Query: 64 CKETAGQFQCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGG 123
C G C+C+PGW G C+ + T +
Sbjct: 301 CDRFQG---CLCSPGWQGLQCER----------------------EGIPRMTPKIVDLPD 335
Query: 124 TCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKET 167
E + G+ E + G + T
Sbjct: 336 HIEVNSGKFNPICKASGWPLPTNEEMTLVKPDGTVLHPKDFNHT 379
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 75.9 bits (187), Expect = 4e-15
Identities = 23/83 (27%), Positives = 34/83 (40%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVG 283
C+S PC + G+C D + GY C C+ +EGSNC+ +EC C
Sbjct: 4 GGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQE 63
Query: 284 DYRCNCSPGWTGHNCDVNINDCV 306
Y C+C+ G+
Sbjct: 64 SYTCSCAQGYRLGEDHKQCVPHD 86
Score = 74.4 bits (183), Expect = 1e-14
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 4/99 (4%)
Query: 567 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKN-NGTCIDGHADF 625
+ C PC + G+C D + + C C G+EG C KNEC P C+ G +
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESY 65
Query: 626 TCLCKNGWKGKTCTSKNGHCDRGTC---KHGGTCADLGS 661
TC C G++ + D+ C DL
Sbjct: 66 TCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQD 104
Score = 64.3 bits (157), Expect = 3e-11
Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 10/107 (9%)
Query: 174 VDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPC 233
C PCL+ C ++ Y C C+ +EG NC + +C D C
Sbjct: 3 KGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDG--------C 54
Query: 234 QNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTN 280
Q+ C+ + Y C C Q + + C
Sbjct: 55 QHF--CLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRA 99
Score = 64.3 bits (157), Expect = 3e-11
Identities = 26/115 (22%), Positives = 39/115 (33%), Gaps = 27/115 (23%)
Query: 337 TDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVNTGDLYSCICKEGFEG 396
+ C S PC++ G C D + G Y+C C G+EG
Sbjct: 3 KGGSPCISQPCLHNGSCQDSIWG--------------------------YTCTCSPGYEG 36
Query: 397 PDCGQDINDCSPQPCYNGG-KCVDGVNWFLCECAPGFAGPDCRININECASNPCG 450
+C N+C P+ C+ G + C CA G+ + CG
Sbjct: 37 SNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACG 91
Score = 63.6 bits (155), Expect = 5e-11
Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 602 NNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCTSKNGHC---DRGTCKHGGTCAD 658
+ C PC +NG+C D +TC C G++G C C C+H C
Sbjct: 3 KGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHF--CLP 60
Query: 659 LGSSFFCHCPPDWEGTSCHIGKLNACKSNPCK 690
S+ C C + H + +
Sbjct: 61 GQESYTCSCAQGYRLGEDHKQCVPHDQCACGV 92
Score = 60.9 bits (148), Expect = 4e-10
Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 22/107 (20%)
Query: 506 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHEN 565
+ C PC + G+C D + + C C G+EG C + +C E
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAK-----NEC----------HPER 50
Query: 566 INDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPC 612
+ C+H C+ S+ C C G+ + C
Sbjct: 51 TDGCQHF-------CLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 59.0 bits (143), Expect = 1e-09
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 17 EPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQ-CKETAGQFQCVC 75
+PC + G+C++ + Y CTC G+ G NCE+ N C C + C C
Sbjct: 11 QPCLHNGSCQD-SIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSC 69
Query: 76 APGWTGPTCK 85
A G+
Sbjct: 70 AQGYRLGEDH 79
Score = 57.4 bits (139), Expect = 5e-09
Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 8/98 (8%)
Query: 300 VNINDCVGQ-CRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGG---ECVD 355
+ C+ Q C H +C D + + C C PGY G C+ N+C P G C+
Sbjct: 3 KGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNEC--HPERTDGCQHFCLP 60
Query: 356 QVNGFRCICPVGFAGQLCENGGTCVNTGDLYSCICKEG 393
+ C C G+ CV +
Sbjct: 61 GQESYTCSCAQGYRLGEDHK--QCVPHDQCACGVLTSE 96
Score = 54.3 bits (131), Expect = 6e-08
Identities = 23/112 (20%), Positives = 35/112 (31%), Gaps = 25/112 (22%)
Query: 402 DINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININECASNPCGYGKEILTVQSR 461
+ C QPC + G C D + + C C+PG+ G +C + NEC +
Sbjct: 4 GGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQ-------- 55
Query: 462 SRSPAYLCVSNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPC 513
S+ CSC G+ H+ C
Sbjct: 56 -----------------HFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 53.2 bits (128), Expect = 1e-07
Identities = 18/72 (25%), Positives = 29/72 (40%)
Query: 643 GHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGGTCVNTGDLY 702
C C H G+C D + C C P +EG++C + K C+ + Y
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESY 65
Query: 703 SCICKEGFVHAL 714
+C C +G+
Sbjct: 66 TCSCAQGYRLGE 77
Score = 52.0 bits (125), Expect = 3e-07
Identities = 22/106 (20%), Positives = 32/106 (30%), Gaps = 26/106 (24%)
Query: 117 EPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVDH 176
+PC + G+C++ + Y CTC G+ G NCE+ N C
Sbjct: 11 QPCLHNGSCQD-SIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHF------------ 57
Query: 177 DHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPC 222
C Q Y C C + + D C
Sbjct: 58 -------------CLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 48.9 bits (117), Expect = 3e-06
Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 23/118 (19%)
Query: 51 NPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDL 110
+PC+ PC + G C+++ + C C+PG+ G C + +
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNC---------------ELAKNECHPER 50
Query: 111 NYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETA 168
H C G + Y C+C +G+ P CG K
Sbjct: 51 TDGCQH-FCLPG-------QESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAP 100
Score = 47.8 bits (114), Expect = 7e-06
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 2/86 (2%)
Query: 469 CVSNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGG-TCVDKVNSFQ 527
C+S P C S + C+C G+ G C N+C C+ S+
Sbjct: 8 CISQPCLHNGSCQ-DSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYT 66
Query: 528 CICRDGWEGEICANSNQSGGSFKCSC 553
C C G+ C
Sbjct: 67 CSCAQGYRLGEDHKQCVPHDQCACGV 92
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 77.0 bits (189), Expect = 1e-14
Identities = 81/452 (17%), Positives = 133/452 (29%), Gaps = 36/452 (7%)
Query: 8 SDLNYCGTHEPCQNGGTCENTAPDQYLCT-CPEGFS--GINCEVVD----NPCMMGPCGN 60
+D + C ++ PC G C + + C CP GF G +CE +D P +
Sbjct: 1 ADPDGCLSN-PCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSK 59
Query: 61 GGQCKETAGQFQC-VCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHE-P 118
+C T F C C P + G + + ++ N C
Sbjct: 60 VPRCVNTQPGFHCLPCPPRYRGNQPVGVG--------LEAAKTEKQVCEPENPCKDKTHN 111
Query: 119 CQNGGTCENTAPDQ---YLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVD 175
C C Y C C G++G ++ + G C A D
Sbjct: 112 CHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKD 171
Query: 176 HDHCNPNPCL-----NGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVS 230
+ PN +G D T++ + F + D + D C +
Sbjct: 172 NCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDN 231
Query: 231 NPCQNGGTCVDL-VDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNC 289
P + +D +G C+ +G + + D C + + VGD+ NC
Sbjct: 232 CPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDGVGDHCDNC 291
Query: 290 SPGWTGHNCDVNINDCVGQCRHGS-TCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCV 348
DV+ + QC + D + C Q D +
Sbjct: 292 PLVHNPDQTDVDNDLVGDQCDNNEDIDDDGHQNNQDNCPYISN--ANQADHDRDGQGDAC 349
Query: 349 NGGECVDQVNGFRCICPVGFAGQLCENGGTCVNTGDLYSCICKEGFEGPDCGQDINDCSP 408
+ + D V R C L N GD ICK+ F+ + + C
Sbjct: 350 DPDDDNDGVPDDRDNCR------LVFNPDQEDLDGDGRGDICKDDFDNDNIPDIDDVCPE 403
Query: 409 QPCYNGGKCVDGVNWFLCECAPGFAGPDCRIN 440
+ + L P+ I
Sbjct: 404 NNAISETDFRNFQMVPLDPKGTTQIDPNWVIR 435
Score = 54.3 bits (130), Expect = 1e-07
Identities = 57/344 (16%), Positives = 93/344 (27%), Gaps = 27/344 (7%)
Query: 302 INDCV-GQCRHGSTCIDLVN-DFHC-ACLPGYT--GRTCQTDINDCESS-----PCVNGG 351
+ C+ C G+ C + + C C G+ G C D+++C
Sbjct: 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHC-EDLDECALVPDICFSTSKVP 61
Query: 352 ECVDQVNGFRCI-CPVGFAGQLCENGGTCVNTGDLYSCICKEGFEGPDCGQDINDCSPQ- 409
CV+ GF C+ CP + G G + C + C ++C
Sbjct: 62 RCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENP-----CKDKTHNCHKHA 116
Query: 410 PCYNGGKCVDGVNWFLCECAPGFAGPDCRININECASNPCGYGKEILTVQSRSRSPAYLC 469
C G D + + CEC G+AG I S+ G+ L + +
Sbjct: 117 ECIYLGHFSDPM--YKCECQTGYAGDG---LICGEDSDLDGWPNLNLVCATNATYHCIKD 171
Query: 470 VSNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCI 529
+ G D + E N + D+V
Sbjct: 172 NCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDN 231
Query: 530 CRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGG-TCVDKVNSFQ 588
C N G +C G ++C + + T D V
Sbjct: 232 CPYVHNPAQIDTDNNGEG---DACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDGVGDHC 288
Query: 589 CICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNG 632
C + + + N DGH + C
Sbjct: 289 DNCPLVHNPDQTDVDNDLVGDQCDNNEDIDDDGHQNNQDNCPYI 332
Score = 50.4 bits (120), Expect = 2e-06
Identities = 39/217 (17%), Positives = 66/217 (30%), Gaps = 13/217 (5%)
Query: 469 CVSNPAYLVARCVSQSGGSFKC-SCDAGFSGKYCH-ENINDCKHN-----PCQNGGTCVD 521
C+SNP + A+C S GS+ C C GF G H E++++C CV+
Sbjct: 6 CLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVN 65
Query: 522 KVNSFQCI-CRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHENINDC-KHNPCQNGGT 579
F C+ C + G + + C + ++C KH C G
Sbjct: 66 TQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENP--CKDKTHNCHKHAECIYLGH 123
Query: 580 CVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCT 639
D ++C C+ G+ G+ ++ N C +
Sbjct: 124 FSD--PMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQ 181
Query: 640 SKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSC 676
G D + +C +
Sbjct: 182 EDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQA 218
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 76.0 bits (186), Expect = 1e-14
Identities = 33/161 (20%), Positives = 49/161 (30%), Gaps = 12/161 (7%)
Query: 244 DGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNIN 303
+ D + C A C C C TG +C
Sbjct: 272 GEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKK 331
Query: 304 DCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCI 363
+ G+ + + + AC+P + T++ D E C NGG C N RC+
Sbjct: 332 NYQGRPWSPGSYLPIPKGAANACIPSISS--IGTNVCDNELLHCQNGGTC---HNNVRCL 386
Query: 364 CPVGFAGQLCE-----NGGTCVNTGDLYSCICKEGFEGPDC 399
CP + G LCE G+C + G
Sbjct: 387 CPAAYTGILCEKLRCEEAGSCGSDSG--QGAPPHGTHHHHH 425
Score = 64.9 bits (157), Expect = 4e-11
Identities = 27/153 (17%), Positives = 43/153 (28%), Gaps = 15/153 (9%)
Query: 561 YCHENINDCKHNPCQN-GGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCI 619
Y +I C CV + C C G C K + P G+ +
Sbjct: 286 YAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSP-GSYL 344
Query: 620 DGHADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIG 679
C + + C++GGTC + C CP + G C
Sbjct: 345 PIPKGAANACIPSISS--IGTNVCDNELLHCQNGGTCHNNVR---CLCPAAYTGILCE-- 397
Query: 680 KLNACKSNPCKNGGTCVNTGDLYSCICKEGFVH 712
+ C+ G+C + + H
Sbjct: 398 ---KLR---CEEAGSCGSDSGQGAPPHGTHHHH 424
Score = 62.2 bits (150), Expect = 2e-10
Identities = 28/178 (15%), Positives = 44/178 (24%), Gaps = 37/178 (20%)
Query: 500 YCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSG 559
Y +I C T C C+ +G
Sbjct: 286 YAISDIKVRGRCKCNLHATVCV----------------------YDNSKLTCECEHNTTG 323
Query: 560 KYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCI 619
C + + + P G+ + C N + E C+N GTC
Sbjct: 324 PDCGKCKKNYQGRPWS-PGSYLPIPKGAANACIPSISS--IGTNVCDNELLHCQNGGTCH 380
Query: 620 DGHADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCH 677
+ CLC + G C++ C+ G+C P H
Sbjct: 381 NN---VRCLCPAAYTGI-------LCEKLRCEEAGSCGSDSGQ--GAPPHGTHHHHHH 426
Score = 57.2 bits (137), Expect = 1e-08
Identities = 34/203 (16%), Positives = 54/203 (26%), Gaps = 38/203 (18%)
Query: 436 DCRININECASNPCGYGKEILTVQSRSRSPAYLCVSNPAYLVARCVSQSGGSFKCSCDAG 495
D RI + A + L + S + L A C C+
Sbjct: 261 DLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHN 320
Query: 496 FSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDA 555
+G C + + + P G+ + C
Sbjct: 321 TTGPDCGKCKKNYQGRPWS-PGSYLPIPKGAANACIPSISS------------------- 360
Query: 556 GFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNN 615
N+ D + CQNGGTC N+ +C+C + G CE C+
Sbjct: 361 ------IGTNVCDNELLHCQNGGTC---HNNVRCLCPAAYTG-------ILCEKLRCEEA 404
Query: 616 GTCIDGHADFTCLCKNGWKGKTC 638
G+C +G
Sbjct: 405 GSCGSD--SGQGAPPHGTHHHHH 425
Score = 56.0 bits (134), Expect = 2e-08
Identities = 35/170 (20%), Positives = 45/170 (26%), Gaps = 38/170 (22%)
Query: 4 FRLLSDLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQ 63
F +SD+ G C T + C C +G +C P G
Sbjct: 285 FYAISDIKVRGRC-KCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGS- 342
Query: 64 CKETAGQFQCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGG 123
C P + + N CQNGG
Sbjct: 343 YLPIPKGAANACIPSISSIGTNVCDN-------------------------ELLHCQNGG 377
Query: 124 TCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQC 173
TC N C CP ++GI CE C G C +GQ
Sbjct: 378 TCHNN----VRCLCPAAYTGILCE----KL---RCEEAGSCGSDSGQGAP 416
Score = 46.8 bits (110), Expect = 2e-05
Identities = 26/156 (16%), Positives = 38/156 (24%), Gaps = 31/156 (19%)
Query: 104 FRLLSDLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQ 163
F +SD+ G C T + C C +G +C P G
Sbjct: 285 FYAISDIKVRGRC-KCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSY 343
Query: 164 CKETAGQ-FQCV--------DHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPR 214
G C+ + C NG C N C C + G C
Sbjct: 344 LPIPKGAANACIPSISSIGTNVCDNELLHCQNGGTCHNN---VRCLCPAAYTGILC---- 396
Query: 215 YKCDNPPCDDIDECVSNPCQNGGTCVDLVDGYKCEC 250
++ C+ G+C
Sbjct: 397 -----------EKL---RCEEAGSCGSDSGQGAPPH 418
Score = 38.3 bits (88), Expect = 0.007
Identities = 21/69 (30%), Positives = 24/69 (34%), Gaps = 13/69 (18%)
Query: 16 HEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVC 75
CQNGGTC N C CP ++GI CE C G C +GQ
Sbjct: 370 LLHCQNGGTCHNN----VRCLCPAAYTGILCE----KL---RCEEAGSCGSDSGQ--GAP 416
Query: 76 APGWTGPTC 84
G
Sbjct: 417 PHGTHHHHH 425
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 71.2 bits (175), Expect = 1e-14
Identities = 31/154 (20%), Positives = 44/154 (28%), Gaps = 20/154 (12%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNIND-CVGQCRHGSTCIDLVN 320
D +EC + C N G Y C+C P + + V D G C
Sbjct: 2 DVNECLDPTTCISGN-CVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNG 60
Query: 321 DFHCACLPGY--TGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCEN--- 375
D C+ G + +C + +PC C GF
Sbjct: 61 DTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILE 120
Query: 376 -------------GGTCVNTGDLYSCICKEGFEG 396
GG C+NT + C C G+
Sbjct: 121 DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYL 154
Score = 68.2 bits (167), Expect = 1e-13
Identities = 38/193 (19%), Positives = 55/193 (28%), Gaps = 40/193 (20%)
Query: 108 SDLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKET 167
+D+N C C +G C NT P Y+C CP F
Sbjct: 1 TDVNECLDPTTCISG-NCVNT-PGSYICDCPPDFELNPT--------------------- 37
Query: 168 AGQFQCVDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDE 227
+ CVD N C D C S C + +
Sbjct: 38 --RVGCVDTRSGN---CYLDIRPRGDNGDTACSNEIGVGVSKASC---------CCSLGK 83
Query: 228 CVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQY---DADECQKSPCVNAALGCTNLVGD 284
PC+ C + + + D DECQ+ P + C N G
Sbjct: 84 AWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGS 143
Query: 285 YRCNCSPGWTGHN 297
++C C G+ +
Sbjct: 144 FQCRCPTGYYLNE 156
Score = 64.7 bits (158), Expect = 2e-12
Identities = 35/173 (20%), Positives = 46/173 (26%), Gaps = 25/173 (14%)
Query: 175 DHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQ 234
D + C C NT Y C C D+E C D C
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNP--------TRVGCVDTRSG---NCY 50
Query: 235 NGGTCVDLVDGYKCECTQAWEGS--NCQYDADECQKSPCVNAALGCTNLVGDYRCNCSPG 292
C S +C + +PC C G
Sbjct: 51 LDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPA-VNTSEYKILCPGGEG 109
Query: 293 WTGHNCDVN---INDCV---GQCRHGSTCIDLVNDFHCACLPGYT----GRTC 335
+ + V I++C G C+ G CI+ F C C GY R C
Sbjct: 110 FRPNPITVILEDIDECQELPGLCQGG-KCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 62.8 bits (153), Expect = 1e-11
Identities = 25/154 (16%), Positives = 36/154 (23%), Gaps = 25/154 (16%)
Query: 486 GSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQS 545
GS+ C C F D + C C G
Sbjct: 22 GSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGV--------- 72
Query: 546 GGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNK- 604
S C ++ PC+ C +G+
Sbjct: 73 ------------SKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILE 120
Query: 605 --NECEPNPCK-NNGTCIDGHADFTCLCKNGWKG 635
+EC+ P G CI+ F C C G+
Sbjct: 121 DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYL 154
Score = 62.0 bits (151), Expect = 2e-11
Identities = 25/131 (19%), Positives = 34/131 (25%), Gaps = 17/131 (12%)
Query: 337 TDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQ------------LCENGGTCVNTGD 384
TD+N+C G CV+ + C CP F C
Sbjct: 1 TDVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNG 60
Query: 385 LYSCICKEGFE--GPDCGQDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRIN-- 440
+C + G C + PC LC GF +
Sbjct: 61 DTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILE 120
Query: 441 -INECASNPCG 450
I+EC P
Sbjct: 121 DIDECQELPGL 131
Score = 61.6 bits (150), Expect = 3e-11
Identities = 25/139 (17%), Positives = 34/139 (24%), Gaps = 18/139 (12%)
Query: 547 GSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWE--GEICANNK 604
GS+ C C F D + C C G C +
Sbjct: 22 GSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSL 81
Query: 605 NECEPNPCKNNGTCIDGHADFTCLCKNGWKGKT----------CTSKNGHCDRGTCKHGG 654
+ PC+ C G++ C G C GG
Sbjct: 82 GKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLC------QGG 135
Query: 655 TCADLGSSFFCHCPPDWEG 673
C + SF C CP +
Sbjct: 136 KCINTFGSFQCRCPTGYYL 154
Score = 60.5 bits (147), Expect = 6e-11
Identities = 27/151 (17%), Positives = 46/151 (30%), Gaps = 5/151 (3%)
Query: 566 INDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADF 625
+N+C G CV+ S+ C C +E + C + + D
Sbjct: 3 VNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDT 62
Query: 626 TCLCKNGWK--GKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGK--L 681
C + G +C G C+ C + + +
Sbjct: 63 ACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDI 122
Query: 682 NACKSNPCK-NGGTCVNTGDLYSCICKEGFV 711
+ C+ P GG C+NT + C C G+
Sbjct: 123 DECQELPGLCQGGKCINTFGSFQCRCPTGYY 153
Score = 49.7 bits (119), Expect = 3e-07
Identities = 39/201 (19%), Positives = 50/201 (24%), Gaps = 48/201 (23%)
Query: 8 SDLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKET 67
+D+N C C +G C NT P Y+C CP F V G C + +
Sbjct: 1 TDVNECLDPTTCISG-NCVNT-PGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGD 58
Query: 68 AGQFQCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGTCEN 127
G C G S L PC+
Sbjct: 59 NGDTACSNEIGVGV--------------------SKASCCCSLGKA-WGTPCEMCPAVNT 97
Query: 128 TAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVDHDHCNPNP-CLN 186
+ + LC EGF D D C P
Sbjct: 98 S-EYKILCPGGEGFRPNPI-----------------------TVILEDIDECQELPGLCQ 133
Query: 187 GAPCFNTQADYYCHCTEDWEG 207
G C NT + C C +
Sbjct: 134 GGKCINTFGSFQCRCPTGYYL 154
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 74.0 bits (181), Expect = 9e-14
Identities = 43/298 (14%), Positives = 71/298 (23%), Gaps = 30/298 (10%)
Query: 158 CGNGGQCKETAGQFQCVDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKC 217
C N D + + C + + ++ + C
Sbjct: 374 CLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDC 433
Query: 218 DNPPCDDIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKS-----PCV 272
D + GT C C W GS C+ ++ + S
Sbjct: 434 DCACQAQAEPNSHRCNNGNGTFEC----GVCRCGPGWLGSQCECSEEDYRPSQQDECSPR 489
Query: 273 NAALGCTNLVG--DYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCI----DLVNDFHCAC 326
C+ +C C G C + + C C
Sbjct: 490 EGQPVCSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLC 549
Query: 327 LPGYTGRTCQTDINDCESSPCVNGGECVDQ---VNGFRCICPVGFAGQLCENGGTCVN-- 381
+TG C ++ NG C + G G G CE TC +
Sbjct: 550 DSDWTGYYCNCTT-RTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPTCPDAC 608
Query: 382 TGDLYSCICKEGFEGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRI 439
T CK+ G + + + C + + V G +C
Sbjct: 609 TFKKECVECKKFDRGALHDE---NTCNRYCRDEIESVK------ELKDTGKDAVNCTY 657
Score = 68.2 bits (166), Expect = 5e-12
Identities = 61/370 (16%), Positives = 84/370 (22%), Gaps = 90/370 (24%)
Query: 326 CLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVNTGDL 385
+PG + S C + I PVGF L
Sbjct: 379 VIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVT-------- 430
Query: 386 YSCICKEGFEGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININECA 445
+ C C C S + G GV C C PG+ G C +E
Sbjct: 431 FDCDC-------ACQAQAEPNSHRCNNGNGTFECGV----CRCGPGWLGSQC--ECSEED 477
Query: 446 SNPCGYGKEILTVQSRSRSPAYLCVSNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHE-- 503
P + S C+ +C C + GK +
Sbjct: 478 YRPSQQDECSPREGQPVCSQRGECLCG----------------QCVCHSSDFGKITGKYC 521
Query: 504 -----NINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFS 558
+ K C G C C+C W G C+C
Sbjct: 522 ECDDFSCVRYKGEMCSGHGQCSCG----DCLCDSDWTGY------------YCNCTTRTD 565
Query: 559 GKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRD-GWEGEICANNKNECEPNPCKNNGT 617
C G C C+C G G+ C K P+ C
Sbjct: 566 TCMSSNG------LLCSGRGKCEC----GSCVCIQPGSYGDTC--EKCPTCPDACTFKKE 613
Query: 618 CIDGHADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCH 677
C CK +G + C D S + +C
Sbjct: 614 C--------VECKKFDRGALHDENTCNRY---------CRDEIESVKELKDTGKDAVNCT 656
Query: 678 IGKLNACKSN 687
+ C
Sbjct: 657 YKNEDDCVVR 666
Score = 62.4 bits (151), Expect = 3e-10
Identities = 53/384 (13%), Positives = 83/384 (21%), Gaps = 107/384 (27%)
Query: 232 PCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNCSP 291
+C+ L G + + C + ++ + + C+C+
Sbjct: 379 VIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFT-IKPVGFKDSLIVQVTFDCDCAC 437
Query: 292 GWTGHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGG 351
N+ G G C C PG+ G C+ D S
Sbjct: 438 QAQAEPNSHRCNNGNGTFECG----------VCRCGPGWLGSQCECSEEDYRPSQQ---- 483
Query: 352 ECVDQVNGFRCICPVGFAGQLCENGGTCVNTGDLYSCICKEGFEGPDCGQ-------DIN 404
C +C G C+ C+C G G+
Sbjct: 484 ----------DECSPREGQPVCSQRGECLC----GQCVCHSSDFGKITGKYCECDDFSCV 529
Query: 405 DCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININECASNPCGYGKEILTVQSRSRS 464
+ C G+C G C C + G C C + S
Sbjct: 530 RYKGEMCSGHGQCSCGD----CLCDSDWTGYYC-----NCTTRTDTCMS----------S 570
Query: 465 PAYLCVSNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVN 524
LC C G G C + C C
Sbjct: 571 NGLLCSGRGKCECGSC---------VCIQPGSYGDTC--EKCPTCPDACTFKKEC----- 614
Query: 525 SFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKV 584
C G E + + C++ V
Sbjct: 615 --------------------------VECKKFDRGALHDE---NTCNRYCRDEIESVK-- 643
Query: 585 NSFQCICRDGWEGEICANNKNECE 608
+ G + C KNE +
Sbjct: 644 ----ELKDTGKDAVNC-TYKNEDD 662
Score = 56.6 bits (136), Expect = 2e-08
Identities = 51/327 (15%), Positives = 66/327 (20%), Gaps = 72/327 (22%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVCAP 77
P + + + +C N G G C C P
Sbjct: 407 PQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFECGV--CRCGP 464
Query: 78 GWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGTCENTAPDQYLCTC 137
GW G C+ + Q + + C G C C C
Sbjct: 465 GWLGSQCECSEEDYRPSQ-----------QDECSPREGQPVCSQRGECLCGQ-----CVC 508
Query: 138 PEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVDHDHCNPNPCLNGAPCFNTQADY 197
G C C + C C
Sbjct: 509 HSSDFGKITG---KYC---ECDDFSC-------------VRYKGEMCSGHGQCSCGD--- 546
Query: 198 YCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQNGGTCVDLVDGYKCECTQA-WEG 256
C C DW G C+ D C G C C C Q G
Sbjct: 547 -CLCDSDWTGYYCNCTT------RTDTCMSSNGLLCSGRGKCEC----GSCVCIQPGSYG 595
Query: 257 SNCQYDADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCI 316
C+ +C P C G D N C CR +
Sbjct: 596 DTCE----KCPTCPDACTFKKEC-------VECKKFDRGALHD--ENTCNRYCRDEIESV 642
Query: 317 DLVNDFHCACLPGYTGRTCQ-TDINDC 342
G C + +DC
Sbjct: 643 K------ELKDTGKDAVNCTYKNEDDC 663
Score = 51.2 bits (122), Expect = 9e-07
Identities = 44/256 (17%), Positives = 62/256 (24%), Gaps = 50/256 (19%)
Query: 480 CVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 539
V S +A + C + + + C I
Sbjct: 358 EVRDLPEELSLSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIK 417
Query: 540 ANSNQSG----GSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGW 595
+ +F C C C H GT C C GW
Sbjct: 418 PVGFKDSLIVQVTFDCDCA-------CQAQAEPNSHRCNNGNGTFEC----GVCRCGPGW 466
Query: 596 EGEICANNKNECEPN------------PCKNNGTCIDGHADFTCLCKNGWKGKTC----- 638
G C ++ + P+ C G C+ G C+C + GK
Sbjct: 467 LGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLCG----QCVCHSSDFGKITGKYCE 522
Query: 639 --TSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHI----GKLNACKSNPCKNG 692
C G C S C C DW G C+ + C
Sbjct: 523 CDDFSCVRYKGEMCSGHGQC----SCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGR 578
Query: 693 GTCVNTGDLYSCICKE 708
G C SC+C +
Sbjct: 579 GKCEC----GSCVCIQ 590
Score = 48.2 bits (114), Expect = 1e-05
Identities = 34/208 (16%), Positives = 43/208 (20%), Gaps = 45/208 (21%)
Query: 13 CGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMG-------PCGNGGQCK 65
C G C C C G C GQC
Sbjct: 489 REGQPVCSQRGECLCGQ-----CVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCS 543
Query: 66 ETAGQFQCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGTC 125
C+C WTG C + C G C
Sbjct: 544 CG----DCLCDSDWTGYYCNCTTRTDTCM------------------SSNGLLCSGRGKC 581
Query: 126 ENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVDHDHCNPNPCL 185
E + G G CE P C +C E + HD N
Sbjct: 582 ECGSC----VCIQPGSYGDTCE--KCPTCPDACTFKKECVECKKFDRGALHDENTCNR-- 633
Query: 186 NGAPCFNTQADYYCHCTEDWEGKNCSFP 213
C + + NC++
Sbjct: 634 ---YCRDEIESVKELKDTGKDAVNCTYK 658
Score = 41.2 bits (96), Expect = 0.001
Identities = 27/193 (13%), Positives = 42/193 (21%), Gaps = 15/193 (7%)
Query: 525 SFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKV 584
SF C + + S + C + +
Sbjct: 369 SFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQ 428
Query: 585 NSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCTSK-NG 643
+F C C + E ++ N C G C C + + +
Sbjct: 429 VTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSP 488
Query: 644 HCDRGTCKHGGTCADLGSSFFCHCPPDWEGTS------CHIGKLNACKSNPCKNGGTCVN 697
+ C G C C C G C K C G C
Sbjct: 489 REGQPVCSQRGEC----LCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSC 544
Query: 698 TGDLYSCICKEGF 710
C+C +
Sbjct: 545 ----GDCLCDSDW 553
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 58.3 bits (142), Expect = 2e-11
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQ 260
D D+C SNPC NGG+C D ++ Y+C C +EG NC+
Sbjct: 2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 55.6 bits (135), Expect = 1e-10
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 338 DINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCE 374
D + CES+PC+NGG C D +N + C CP GF G+ CE
Sbjct: 2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 52.9 bits (128), Expect = 1e-09
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 504 NINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 539
+ + C+ NPC NGG+C D +NS++C C G+EG+ C
Sbjct: 2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNC 37
Score = 52.9 bits (128), Expect = 1e-09
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 565 NINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 600
+ + C+ NPC NGG+C D +NS++C C G+EG+ C
Sbjct: 2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNC 37
Score = 50.6 bits (122), Expect = 9e-09
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 402 DINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRI 439
D + C PC NGG C D +N + C C GF G +C +
Sbjct: 2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 47.5 bits (114), Expect = 1e-07
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 603 NKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTC 638
+ ++CE NPC N G+C D + C C G++GK C
Sbjct: 2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNC 37
Score = 44.8 bits (107), Expect = 9e-07
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 300 VNINDCVGQ-CRHGSTCIDLVNDFHCACLPGYTGRTCQ 336
V+ + C C +G +C D +N + C C G+ G+ C+
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 40.9 bits (97), Expect = 2e-05
Identities = 19/37 (51%), Positives = 21/37 (56%)
Query: 174 VDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNC 210
VD D C NPCLNG C + Y C C +EGKNC
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNC 37
Score = 40.2 bits (95), Expect = 4e-05
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEV 48
PC NGG+C++ + Y C CP GF G NCE+
Sbjct: 10 PCLNGGSCKD-DINSYECWCPFGFEGKNCEL 39
Score = 40.2 bits (95), Expect = 4e-05
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 118 PCQNGGTCENTAPDQYLCTCPEGFSGINCEV 148
PC NGG+C++ + Y C CP GF G NCE+
Sbjct: 10 PCLNGGSCKD-DINSYECWCPFGFEGKNCEL 39
Score = 37.8 bits (89), Expect = 3e-04
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 51 NPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKI 86
+ C PC NGG CK+ ++C C G+ G C++
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 37.5 bits (88), Expect = 4e-04
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 682 NACKSNPCKNGGTCVNTGDLYSCICKEGF 710
+ C+SNPC NGG+C + + Y C C GF
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGF 32
Score = 36.3 bits (85), Expect = 0.001
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 645 CDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHI 678
C+ C +GG+C D +S+ C CP +EG +C +
Sbjct: 6 CESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 26.3 bits (59), Expect = 3.7
Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 26/63 (41%)
Query: 439 ININECASNPCGYGKEILTVQSRSRSPAYLCVSNPAYLVARCVSQSGGSFKCSCDAGFSG 498
++ ++C SNPC G C S++C C GF G
Sbjct: 1 VDGDQCESNPCLNG-------------------------GSCKDDI-NSYECWCPFGFEG 34
Query: 499 KYC 501
K C
Sbjct: 35 KNC 37
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 66.0 bits (160), Expect = 3e-11
Identities = 40/334 (11%), Positives = 78/334 (23%), Gaps = 45/334 (13%)
Query: 340 NDCESSPCVNGGECVDQVNGFR-CICPVGFAGQLCENGGTCVNTGDLYSCICKEGFEGPD 398
+ ++ V + F+ I V L V++G++ G
Sbjct: 130 PELRAAALKLTLASVREREPFKGWIRDVRVQSSLALP----VDSGEVKLDDEPPNSGGGS 185
Query: 399 CGQDINDCSPQPCYNGGKCVDGVNWFLCEC-APGFAGPDCRININECASNPCGYGKEILT 457
+ + C NGG C + +C+C GF G DC E + G
Sbjct: 186 PCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYD 245
Query: 458 VQSRSRSPAYLCVSNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQN-- 515
+ + ++ L + + ++G G S Y + + + + N
Sbjct: 246 LSQNPIQSSSDEIT----LSFKTLQRNG----LMLHTGKSADYVNLALKNGAVSLVINLG 297
Query: 516 GGTCVDKVNSFQCICRDG-WEGEICANSNQSGGSFKCSCDAGFSGKYCHENINDCKHNPC 574
G V D W + + +++
Sbjct: 298 SGAFEALVEPVNGKFNDNAW----------------HDVKVTRNLRQVTISVDGILTTTG 341
Query: 575 QNGGTCVDKVNSFQCIC------RDGWEGEICANNKNECEPNPCKNNGTCI-----DGHA 623
+ S G +NN C N
Sbjct: 342 YTQEDY-TMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYKNNDVRLELSRLAKQ 400
Query: 624 DFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCA 657
+ +G C + +
Sbjct: 401 GDPKMKIHGVVAFKCENVATLDPITFETPESFIS 434
Score = 62.2 bits (150), Expect = 4e-10
Identities = 31/273 (11%), Positives = 60/273 (21%), Gaps = 46/273 (16%)
Query: 206 EGKNCSFPRYKCDNPPCDDIDECVSNPCQNGGTCVDLVDGYKCECTQ-AWEGSNCQYDAD 264
E K P PC+ +E C NGG C + D C+C++ + G +C +
Sbjct: 171 EVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKE 230
Query: 265 ECQKSPCVNAALGCTNLVGDYRCN-----------------CSPGWTGHNCDVNINDCVG 307
E + + + + G + ++ + +
Sbjct: 231 EYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLALKNGAV 290
Query: 308 QCR----------HGSTCIDLVND-FHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQ 356
ND R ++ ++ +
Sbjct: 291 SLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDY-TM 349
Query: 357 VNGFRCICPVGFAGQLCENGGTCVNTGDLYSCICKEGFEG-----PDCGQDINDCSPQPC 411
+ G +T DL F G D+ +
Sbjct: 350 LGSDDFFYV-----------GGSPSTADLPGSPVSNNFMGCLKEVVYKNNDVRLELSRLA 398
Query: 412 YNGGKCVDGVNWFLCECAPGFAGPDCRININEC 444
G + +C E
Sbjct: 399 KQGDPKMKIHGVVAFKCENVATLDPITFETPES 431
Score = 61.0 bits (147), Expect = 1e-09
Identities = 34/330 (10%), Positives = 72/330 (21%), Gaps = 51/330 (15%)
Query: 287 CNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSP 346
+ G DV + + + +D P G + + E
Sbjct: 144 VREREPFKGWIRDVRVQSSL------ALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGV 197
Query: 347 CVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVNTGDLYSCICKEGFEGPDCGQDINDC 406
C+NGG C + C C GF G DC Q +
Sbjct: 198 CLNGGVCSVVDDQAVCDCSRT-------------------------GFRGKDCSQGKEEY 232
Query: 407 SPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININECASNP------CGYGKEILTVQS 460
+ C D I ++ G + + +
Sbjct: 233 IATFKGSEYFCYDLSQ-------NPIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLAL 285
Query: 461 RSRSPAYLCVSNPAYLVARCVSQSGG---SFKCSCDAGFSGKYCHENINDCKHNPCQNGG 517
++ + + + A +G + + + +++
Sbjct: 286 KNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQE 345
Query: 518 TCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNG 577
+ S G + +F C Y + ++ + G
Sbjct: 346 DY-TMLGSDDFFYVGGSPSTADLPGSPVSNNF-MGCLKEV--VYKNNDVRLELSRLAKQG 401
Query: 578 GTCVDKVNSFQCICRDGWEGEICANNKNEC 607
+ C + + E
Sbjct: 402 DPKMKIHGVVAFKCENVATLDPITFETPES 431
Score = 57.2 bits (137), Expect = 2e-08
Identities = 35/256 (13%), Positives = 69/256 (26%), Gaps = 27/256 (10%)
Query: 376 GGTCVNTGDLYSCICKEGFEGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCEC-APGFAG 434
G + + G + + C PC N G C DG N ++C+C G+ G
Sbjct: 592 DGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLG 651
Query: 435 PDCRININECASNPCGYGK-----------EILTVQSRSRSPA----YLCVSNPAYLVAR 479
C + + + K E ++++ RS+ + A +
Sbjct: 652 RSCEREATVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRL 711
Query: 480 CVSQSGGSFKCSCDAGFSGKYCHENIND-------CKHNPCQNGGTCVDKVNSFQCICR- 531
+ + G + N+ND ++ VD +
Sbjct: 712 ELDAGRVKLTVNLGKGPETLFAGYNLNDNEWHTVRVVRRG-KSLKLTVDDQQAMTGQMAG 770
Query: 532 --DGWEGEICANSNQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQC 589
E + + S + F G N + G + +
Sbjct: 771 DHTRLEFHNIETGIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARF 830
Query: 590 ICRDGWEGEICANNKN 605
R+ + K+
Sbjct: 831 GFRNIIADPVTFKTKS 846
Score = 56.0 bits (134), Expect = 4e-08
Identities = 34/229 (14%), Positives = 60/229 (26%), Gaps = 10/229 (4%)
Query: 217 CDNPPCDDIDECVSNPCQNGGTCVDLVDGYKCECTQ-AWEGSNCQYDADECQKSPCVNAA 275
+ + C+SNPC+N G C D + Y C+C+ + G +C+ +A +
Sbjct: 611 KPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMK 670
Query: 276 LGCTNLVGDYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVND---FHCACLPGYTG 332
+ ++ + S + + + + ++L G
Sbjct: 671 IQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLGKGPET 730
Query: 333 RTCQTDINDCES---SPCVNGGEC---VDQVNGFRCICPVGFAGQLCENGGTCVNTGDLY 386
++ND E G VD N T + T Y
Sbjct: 731 LFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERRY 790
Query: 387 SCICKEGFEGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGP 435
F G N + G A P
Sbjct: 791 LSSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRNIIADP 839
Score = 53.3 bits (127), Expect = 2e-07
Identities = 35/305 (11%), Positives = 77/305 (25%), Gaps = 27/305 (8%)
Query: 248 CECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNINDCVG 307
+ ++G P + + + P G + + G
Sbjct: 144 VREREPFKGWIRDVRVQSSLALPVDSGEVKL--------DDEPPNSGGGSPCEAGEEGEG 195
Query: 308 Q-CRHGSTCIDLVNDFHCAC-LPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICP 365
C +G C + + C C G+ G+ C + ++ + C D
Sbjct: 196 GVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSS 255
Query: 366 VGFAGQL--CENGGTCVNTGDLYSCICKEGFEGP-----DCGQDINDCSPQPCYNGGKCV 418
+ G ++TG + G + G + +P GK
Sbjct: 256 DEITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPV--NGKFN 313
Query: 419 DGVNWFLCECAPGFAGPDCRININECASNPCGYGKEILTVQSRSRSPAYLCVSNPAYLVA 478
D W + I+++ + ++ + S Y+ S +
Sbjct: 314 DN-AW--HDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLG--SDDFFYVGGSPSTADLP 368
Query: 479 RCVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEI 538
+ F C K + + + + V +F+C +
Sbjct: 369 GSPVSNN--F-MGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPIT 425
Query: 539 CANSN 543
Sbjct: 426 FETPE 430
Score = 50.2 bits (119), Expect = 2e-06
Identities = 31/276 (11%), Positives = 58/276 (21%), Gaps = 38/276 (13%)
Query: 305 CVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCIC 364
C+ D+ G + C S+PC N G C D N + C C
Sbjct: 585 CIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDC 644
Query: 365 PVGFAGQLCENGGTCVNTGDLYSCI-CKEGFEGPDCGQDI---------------NDCSP 408
V + D + + +D+
Sbjct: 645 SGTGYLGRSCEREATVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRD 704
Query: 409 QPCYNGGKCVDGVNWFLCECAPGFAGPDCRININECASNPCGYGKEILTVQSRSRSPAYL 468
+ G G N+N+ + R L
Sbjct: 705 SADTLRLELDAGRVKLTVNLGKGPETLFAGYNLND--------NEWHTVRVVRRGKSLKL 756
Query: 469 CVSNPAYLVARCVSQ--------------SGGSFKCSCDAGFSGKYCHENINDCKHNPCQ 514
V + + + + + S + F G N +
Sbjct: 757 TVDDQQAMTGQMAGDHTRLEFHNIETGIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLC 816
Query: 515 NGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFK 550
G + + R+ + + S +
Sbjct: 817 KNGDIDYCELNARFGFRNIIADPVTFKTKSSYVALA 852
Score = 49.5 bits (117), Expect = 4e-06
Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 9/110 (8%)
Query: 589 CICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCTSKNGHCDRG 648
R+ ++G I P + +D + + + G
Sbjct: 144 VREREPFKGWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGG-------SPCEAGEEGEGG 196
Query: 649 TCKHGGTCADLGSSFFCHCP-PDWEGTSCHIGKLNACKSNPCKNGGTCVN 697
C +GG C+ + C C + G C + + C +
Sbjct: 197 VCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQ-GKEEYIATFKGSEYFCYD 245
Score = 47.9 bits (113), Expect = 1e-05
Identities = 35/296 (11%), Positives = 59/296 (19%), Gaps = 43/296 (14%)
Query: 33 YLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVC-APGWTGPTCKIKHNFF 91
L P G + G C NGG C Q C C G+ G C +
Sbjct: 173 KLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEY 232
Query: 92 PYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDN 151
F + L + + E + T + + + +N + +
Sbjct: 233 IA-TFKGSEYFCYDLSQNPIQSSSDEITLSFKT---LQRNGLMLHTGKSADYVNLALKN- 287
Query: 152 PCMMGPCGNGGQCKETAGQFQCVDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCS 211
G V + L + + + +
Sbjct: 288 -----------------GAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVT 330
Query: 212 FPRYKCDNPPCDDIDECVSNPCQNGGTCVDLVDGYK-----CECTQAWEGSNCQYDADEC 266
+D ++ L T GS + C
Sbjct: 331 I-----------SVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFMGC 379
Query: 267 QKSPCVNAALGCTNL----VGDYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDL 318
K L G C+ + I L
Sbjct: 380 LKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISL 435
Score = 47.1 bits (111), Expect = 2e-05
Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 396 GPDCGQDINDCSPQPCYNGGKCVDGVNWFLCEC-APGFAGPDCRININECASNPCGY 451
C C C N G C+ + F C+C F+GP C + G
Sbjct: 1010 ERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGG 1066
Score = 47.1 bits (111), Expect = 2e-05
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 329 GYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPV-GFAGQLCENGGTCVNTGDLYS 387
G R C+ C+ C N G C+ Q +GF C C + F+G LC + GT
Sbjct: 1007 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGG 1066
Query: 388 CIC 390
I
Sbjct: 1067 QIT 1069
Score = 46.0 bits (108), Expect = 4e-05
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 562 CHENINDCKHNPCQNGGTCVDKVNSFQCICRD-GWEGEICANNKNECEPNPC 612
C C+ + C N G C+ + + F C C + G +C + +
Sbjct: 1013 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 1064
Score = 45.2 bits (106), Expect = 8e-05
Identities = 43/349 (12%), Positives = 71/349 (20%), Gaps = 75/349 (21%)
Query: 35 CTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKIKHNFFPYL 94
E F G +V + P +G + +P G
Sbjct: 144 VREREPFKGWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEG---------- 193
Query: 95 QFIPLTTSLFRLLSDLNYCGTHEPCQNGGTCENTAPDQYLCTCPE-GFSGINCEVVDNPC 153
C NGG C DQ +C C GF G +C
Sbjct: 194 --------------------EGGVCLNGGVCSVV-DDQAVCDCSRTGFRGKDCSQGKEEY 232
Query: 154 MMGPCGNGGQCKETAGQFQCVDHDHCNPN---PCLNGAPCFNTQADYYCHCTEDWEGKNC 210
+ G+ C + + D + NG ++ Y G
Sbjct: 233 IATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSADYV-NLALKNGAVS 291
Query: 211 SFPRYKCDNPPCDDIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSP 270
+ + + E V+ D + D +
Sbjct: 292 --LVINLGSGAFEALVEPVNGKFN---------DNAWHDVKVTRNLRQVTISVDGILTTT 340
Query: 271 CVNAALGCTNLVGDYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGY 330
+ + VG + +
Sbjct: 341 G-----------------YTQE-DYTMLGSDDFFYVGG------SPSTADLPGSPVSNNF 376
Query: 331 TGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTC 379
G C ++ + V G + G CEN T
Sbjct: 377 MG--CLKEV--VYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATL 421
Score = 44.8 bits (105), Expect = 1e-04
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 222 CDDIDECVSNPCQNGGTCVDLVDGYKCECTQ-AWEGSNCQYDADECQKSPC 271
C + C N G C+ DG+ C+C+ ++ G C S
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 1064
Score = 44.4 bits (104), Expect = 1e-04
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 501 CHENINDCKHNPCQNGGTCVDKVNSFQCICRD-GWEGEICANSNQSGGSFKC 551
C C+ + C N G C+ + + F C C + G +C + + K
Sbjct: 1013 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 1064
Score = 44.4 bits (104), Expect = 1e-04
Identities = 16/69 (23%), Positives = 20/69 (28%)
Query: 577 GGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGK 636
G D + G + C NPCKNNG C DG + C C
Sbjct: 592 DGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLG 651
Query: 637 TCTSKNGHC 645
+
Sbjct: 652 RSCEREATV 660
Score = 43.7 bits (102), Expect = 2e-04
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 600 CANNKNECEPNPCKNNGTCIDGHADFTCLCKN-GWKGKTCTSKNGHCDRGTC 650
C C+ + C N G C+ F+C C + G C
Sbjct: 1013 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 1064
Score = 42.9 bits (100), Expect = 4e-04
Identities = 31/223 (13%), Positives = 47/223 (21%), Gaps = 22/223 (9%)
Query: 172 QCVDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSN 231
C NPC N C + Y C C+ D +
Sbjct: 615 SRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCER---EATVLSYDGSMFMKI 671
Query: 232 PCQNGGTCVDL----------VDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNL 281
G T + + D + VN G L
Sbjct: 672 QLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLGKGPETL 731
Query: 282 VGDYRCN------CSPGWTGHNCDVNINDCV---GQCRHGSTCIDLVNDFHCACLPGYTG 332
Y N G + + ++D GQ T ++ N
Sbjct: 732 FAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERRYL 791
Query: 333 RTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCEN 375
+ ++ S NG +D A N
Sbjct: 792 SSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRN 834
Score = 42.9 bits (100), Expect = 4e-04
Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 40 GFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVC-APGWTGPTCKIKHNFFP 92
G CE C C N G C + F C C ++GP C +
Sbjct: 1007 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYI 1060
Score = 42.1 bits (98), Expect = 6e-04
Identities = 29/235 (12%), Positives = 54/235 (22%), Gaps = 17/235 (7%)
Query: 35 CTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVC-APGWTGPTCKIKHNFFPY 93
G PC+ PC N G C++ ++ C C G+ G +C+ + Y
Sbjct: 604 VQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSY 663
Query: 94 LQFIPLTTSLFRLLSDLNY---CGTHEPCQNGGTCENTAPDQYLCTCPEGFSG-----IN 145
+ + L ++ G T+ D E +G +N
Sbjct: 664 DGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVN 723
Query: 146 CEVVDNPCMMGPCGNGGQ-------CKETAGQFQCVDHDHCNPNPCLNGAPCFNTQADYY 198
G N + + + + VD
Sbjct: 724 LGKGPETLFAGYNLNDNEWHTVRVVRRGKSLKLT-VDDQQAMTGQMAGDHTRLEFHNIET 782
Query: 199 CHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQNGGTCVDLVDGYKCECTQA 253
TE + + + +L + A
Sbjct: 783 GIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRNIIA 837
Score = 42.1 bits (98), Expect = 8e-04
Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 550 KCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICR-DGWEGEICANNKNECE 608
+ AG E C NPC+N G C D N + C C G+ G C
Sbjct: 603 EVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLS 662
Query: 609 PNPC 612
+
Sbjct: 663 YDGS 666
Score = 41.0 bits (95), Expect = 0.002
Identities = 12/75 (16%), Positives = 18/75 (24%)
Query: 615 NGTCIDGHADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGT 674
+G D G K C CK+ G C D + + C C
Sbjct: 592 DGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLG 651
Query: 675 SCHIGKLNACKSNPC 689
+ +
Sbjct: 652 RSCEREATVLSYDGS 666
Score = 39.1 bits (90), Expect = 0.006
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 638 CTSKNGHCDRGTCKHGGTCADLGSSFFCHCP-PDWEGTSCHI 678
C + C +C + G C F C C + G C+
Sbjct: 1013 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCND 1054
Score = 38.3 bits (88), Expect = 0.010
Identities = 19/103 (18%), Positives = 27/103 (26%), Gaps = 1/103 (0%)
Query: 122 GGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVDHDHCNP 181
G E L EGF G V N + + C + C
Sbjct: 963 GVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPSTTCQE 1022
Query: 182 NPCLNGAPCFNTQADYYCHCTE-DWEGKNCSFPRYKCDNPPCD 223
+ C N C + C C+ + G C+ P
Sbjct: 1023 DSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGG 1065
Score = 37.9 bits (87), Expect = 0.013
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 679 GKLNACKSNPCKNGGTCVNTGDLYSCICKEGF 710
G C+ + C N G C+ D +SC C
Sbjct: 1015 GPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTS 1046
Score = 37.5 bits (86), Expect = 0.018
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Query: 290 SPGWTGHNCDVNINDCVGQ-CRHGSTCIDLVNDFHCAC-LPGYTGRTCQTDINDCESSPC 347
G C+ C C + C+ + F C C + ++G C S
Sbjct: 1005 CNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 1064
Score = 35.2 bits (80), Expect = 0.093
Identities = 14/66 (21%), Positives = 16/66 (24%)
Query: 140 GFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVDHDHCNPNPCLNGAPCFNTQADYYC 199
G CE C C N G C + F C P N +
Sbjct: 1007 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGG 1066
Query: 200 HCTEDW 205
T W
Sbjct: 1067 QITYKW 1072
Score = 34.8 bits (79), Expect = 0.12
Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 651 KHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGGTCVNTGDLYSCICKEGF 710
G D+ + SC C SNPCKN G C + + Y C C
Sbjct: 590 FIDGQSKDIRQMAEVQSTAGVKP-SCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTG 648
Score = 34.8 bits (79), Expect = 0.13
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 256 GSNCQYDADECQKSPCVNAALGCTNLVGDYRCNCS-PGWTGHNCDVNINDCVGQCRHGST 314
C+ + CQ+ C N + C + C+CS ++G C+ + G
Sbjct: 1010 ERGCEGPSTTCQEDSCSNQGV-CLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQI 1068
Query: 315 CIDL 318
Sbjct: 1069 TYKW 1072
Score = 31.7 bits (71), Expect = 1.2
Identities = 11/45 (24%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 15 THEPCQNGGTCENTAPDQYLCTCPE-GFSGINCEVVDNPCMMGPC 58
+ C N G C D + C C FSG C +
Sbjct: 1021 QEDSCSNQGVCLQQ-WDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 1064
Score = 31.4 bits (70), Expect = 1.4
Identities = 33/245 (13%), Positives = 57/245 (23%), Gaps = 39/245 (15%)
Query: 113 CGTHEPCQNGGTCENTAPDQYLCTCPE-GFSGINCEVVDNPCMMGPCGNGGQCKETAGQF 171
PC+N G C + ++Y+C C G+ G +CE +
Sbjct: 621 PCLSNPCKNNGMCRDG-WNRYVCDCSGTGYLGRSCEREATVLSYDGSMF--------MKI 671
Query: 172 QCVDHDHCNPNPCL--------NGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCD 223
Q H G T D + + P
Sbjct: 672 QLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKL-TVNLGKGPET 730
Query: 224 DIDECVSNPCQ--------NGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAA 275
N + G + VD + T G + + +
Sbjct: 731 LFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQA-MTGQMAGDHTR---------LEFHNI 780
Query: 276 LGCTNLVGDYRCNCSPGWTGHNCDVNIN--DCVGQCRHGSTCIDLVNDFHCACLPGYTGR 333
Y + + GH + N + C++G +N
Sbjct: 781 ETGIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRNIIADPV 840
Query: 334 TCQTD 338
T +T
Sbjct: 841 TFKTK 845
Score = 31.0 bits (69), Expect = 1.8
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 13 CGTHEPCQNGGTCENTAPDQYLCTCPE-GFSGINCEVVDNPCMMGPCG 59
PC+N G C + ++Y+C C G+ G +CE
Sbjct: 621 PCLSNPCKNNGMCRDG-WNRYVCDCSGTGYLGRSCEREATVLSYDGSM 667
Score = 29.4 bits (65), Expect = 5.3
Identities = 8/72 (11%), Positives = 13/72 (18%)
Query: 13 CGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQ 72
+ +YL + P F G + N G +
Sbjct: 770 GDHTRLEFHNIETGIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNAR 829
Query: 73 CVCAPGWTGPTC 84
P
Sbjct: 830 FGFRNIIADPVT 841
Score = 28.7 bits (63), Expect = 8.9
Identities = 7/79 (8%), Positives = 14/79 (17%)
Query: 113 CGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQ 172
+ +YL + P F G + N G +
Sbjct: 770 GDHTRLEFHNIETGIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNAR 829
Query: 173 CVDHDHCNPNPCLNGAPCF 191
+ +
Sbjct: 830 FGFRNIIADPVTFKTKSSY 848
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 57.9 bits (140), Expect = 1e-10
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 360 FRCICPVGFAGQLCENGGT----CVNTGDLYSCICKEGFEGPDCGQDINDCSPQPCYNGG 415
++ IC + + + + + + C C G + CS C+NGG
Sbjct: 2 YQVICRDEKTQMIYQQHQSWLRPVLRSNRVEYCWCNSGRAQC-HSVPVKSCSEPRCFNGG 60
Query: 416 KCVDGV--NWFLCECAPGFAGPDCRININE 443
C + + F+C+C GFAG C I+
Sbjct: 61 TCQQALYFSDFVCQCPEGFAGKSCEIDTRA 90
Score = 57.5 bits (139), Expect = 1e-10
Identities = 23/92 (25%), Positives = 31/92 (33%), Gaps = 10/92 (10%)
Query: 285 YRCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCES 344
Y+ C T + + R +C C G + C
Sbjct: 2 YQVICRDEKTQMIYQQHQSWLRPVLRSNRV-------EYCWCNSGRAQ-CHSVPVKSCSE 53
Query: 345 SPCVNGGECVDQV--NGFRCICPVGFAGQLCE 374
C NGG C + + F C CP GFAG+ CE
Sbjct: 54 PRCFNGGTCQQALYFSDFVCQCPEGFAGKSCE 85
Score = 57.5 bits (139), Expect = 1e-10
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Query: 525 SFQCICRDGWEGEICAN-------SNQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNG 577
S+Q ICRD I +S C C++G + + C C NG
Sbjct: 1 SYQVICRDEKTQMIYQQHQSWLRPVLRSNRVEYCWCNSGRAQC-HSVPVKSCSEPRCFNG 59
Query: 578 GTCVDKV--NSFQCICRDGWEGEICANNKNE 606
GTC + + F C C +G+ G+ C +
Sbjct: 60 GTCQQALYFSDFVCQCPEGFAGKSCEIDTRA 90
Score = 56.3 bits (136), Expect = 3e-10
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 478 ARCVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKV--NSFQCICRDGWE 535
R V +S C C++G + + C C NGGTC + + F C C +G+
Sbjct: 22 LRPVLRSNRVEYCWCNSGRAQC-HSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFA 80
Query: 536 GEIC 539
G+ C
Sbjct: 81 GKSC 84
Score = 52.5 bits (126), Expect = 7e-09
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 246 YKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNINDC 305
Y+ C E + Y + P + + C C+ G V + C
Sbjct: 2 YQVICRD--EKTQMIYQQHQSWLRPVLRSN-------RVEYCWCNSGRAQ-CHSVPVKSC 51
Query: 306 VGQ-CRHGSTCIDLV--NDFHCACLPGYTGRTCQTDIN 340
C +G TC + +DF C C G+ G++C+ D
Sbjct: 52 SEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTR 89
Score = 50.2 bits (120), Expect = 5e-08
Identities = 20/93 (21%), Positives = 29/93 (31%), Gaps = 11/93 (11%)
Query: 548 SFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNEC 607
S++ C + ++ P C C G + C
Sbjct: 1 SYQVICRDEKTQMIYQQH--QSWLRPVLRSN------RVEYCWCNSGRAQC-HSVPVKSC 51
Query: 608 EPNPCKNNGTCIDG--HADFTCLCKNGWKGKTC 638
C N GTC +DF C C G+ GK+C
Sbjct: 52 SEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSC 84
Score = 48.6 bits (116), Expect = 2e-07
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 14/79 (17%)
Query: 189 PCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQNGGTCVDLV--DGY 246
P + YC C + + C C NGGTC + +
Sbjct: 24 PVLRSNRVEYCWCNSGRAQCHSV------------PVKSCSEPRCFNGGTCQQALYFSDF 71
Query: 247 KCECTQAWEGSNCQYDADE 265
C+C + + G +C+ D
Sbjct: 72 VCQCPEGFAGKSCEIDTRA 90
Score = 47.9 bits (114), Expect = 3e-07
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 15 THEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETA--GQFQ 72
++ Q+ + C C G + V C C NGG C++ F
Sbjct: 14 IYQQHQSWLRPVLRSNRVEYCWCNSGRAQ-CHSVPVKSCSEPRCFNGGTCQQALYFSDFV 72
Query: 73 CVCAPGWTGPTCKI 86
C C G+ G +C+I
Sbjct: 73 CQCPEGFAGKSCEI 86
Score = 44.0 bits (104), Expect = 7e-06
Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 586 SFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCTSKNGHC 645
S+Q ICRD I +++ P + + C C +G C
Sbjct: 1 SYQVICRDEKTQMIYQQHQSWLRP--------VLRSNRVEYCWCNSGRAQCHSVPVK-SC 51
Query: 646 DRGTCKHGGTCADL--GSSFFCHCPPDWEGTSCHI 678
C +GGTC S F C CP + G SC I
Sbjct: 52 SEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 86
Score = 41.7 bits (98), Expect = 4e-05
Identities = 22/117 (18%), Positives = 35/117 (29%), Gaps = 33/117 (28%)
Query: 33 YLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKIKHNFFP 92
Y C + + + + + P C C G
Sbjct: 2 YQVICRDEKTQMIYQQHQ--SWLRPVLRSN------RVEYCWCNSGRAQCHS-------- 45
Query: 93 YLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGTC-ENTAPDQYLCTCPEGFSGINCEV 148
+ C + C NGGTC + ++C CPEGF+G +CE+
Sbjct: 46 ---------------VPVKSC-SEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 86
Score = 41.3 bits (97), Expect = 7e-05
Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 660 GSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGGTCVNTGDL--YSCICKEGF 710
+C C CH + +C C NGGTC + C C EGF
Sbjct: 29 NRVEYCWCNSGRAQ--CHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGF 79
Score = 38.2 bits (89), Expect = 9e-04
Identities = 20/121 (16%), Positives = 30/121 (24%), Gaps = 33/121 (27%)
Query: 386 YSCICKEGFEGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININECA 445
Y IC++ + +P + C C G A + + C+
Sbjct: 2 YQVICRDEKTQMIY--QQHQSWLRPVLRSNRV------EYCWCNSGRAQC-HSVPVKSCS 52
Query: 446 SNPCGYGKEILTVQSRSRSPAYLCVSNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHENI 505
C G C F C C GF+GK C +
Sbjct: 53 EPRCFNGGT--------------CQQAL----------YFSDFVCQCPEGFAGKSCEIDT 88
Query: 506 N 506
Sbjct: 89 R 89
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 54.8 bits (132), Expect = 4e-09
Identities = 33/159 (20%), Positives = 51/159 (32%), Gaps = 30/159 (18%)
Query: 117 EPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVDH 176
C +C N C C GFS + + C D
Sbjct: 7 RWCPQDSSCVNA----TACRCNPGFSSFSEIITTPM------------------ETCDDI 44
Query: 177 DHC---NPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSN-- 231
+ C + C + C+NT+ Y C C+ +E + + C D+DEC S
Sbjct: 45 NECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQH 104
Query: 232 PCQNGGTCVDLVDGYKCECTQAWEGSNCQY---DADECQ 267
C + C + V Y C C W+ + C+
Sbjct: 105 QCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVCE 143
Score = 48.7 bits (116), Expect = 5e-07
Identities = 33/143 (23%), Positives = 48/143 (33%), Gaps = 26/143 (18%)
Query: 182 NPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVS---NPCQNGGT 238
C + C N C C + + CDDI+EC + C
Sbjct: 7 RWCPQDSSCVNA---TACRCNPGFSSFSEIITT---PMETCDDINECATLSKVSCGKFSD 60
Query: 239 CVDLVDGYKCECTQAWEGSNCQY-----------DADECQ--KSPCVNAALGCTNLVGDY 285
C + Y C C+ +E + D DEC + C ++ + C N VG Y
Sbjct: 61 CWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTV-CFNTVGSY 119
Query: 286 RCNCSPGWTGHNC---DVNINDC 305
C C PGW + + C
Sbjct: 120 SCRCRPGWKPRHGIPNNQKDTVC 142
Score = 46.0 bits (109), Expect = 4e-06
Identities = 31/145 (21%), Positives = 48/145 (33%), Gaps = 29/145 (20%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQY--------DADECQKSPCVNAA 275
D C + C +CV+ C C + + D +EC V+
Sbjct: 1 DSRGC-ARWCPQDSSCVN---ATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCG 56
Query: 276 LG--CTNLVGDYRCNCSPGWTGHNCDVN-----------INDC---VGQCRHGSTCIDLV 319
C N G Y C CSPG+ + +++C QC + C + V
Sbjct: 57 KFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTV 116
Query: 320 NDFHCACLPGYTGRTCQ-TDINDCE 343
+ C C PG+ R + D
Sbjct: 117 GSYSCRCRPGWKPRHGIPNNQKDTV 141
Score = 43.7 bits (103), Expect = 3e-05
Identities = 33/160 (20%), Positives = 50/160 (31%), Gaps = 34/160 (21%)
Query: 301 NINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGF 360
+ C C S+C+ N C C PG++ + C + EC
Sbjct: 1 DSRGCARWCPQDSSCV---NATACRCNPGFSSFSEIITTP---METCDDINECAT----- 49
Query: 361 RCICPVGFAGQLCENGGTCVNTGDLYSCICKEGFEGPDCG-----------QDINDCS-- 407
+ C C NT Y C+C G+E QD+++CS
Sbjct: 50 -------LSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSG 102
Query: 408 PQPCYNGGKCVDGVNWFLCECAPGFAGPDCR---ININEC 444
C + C + V + C C PG+ C
Sbjct: 103 QHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVC 142
Score = 42.9 bits (101), Expect = 6e-05
Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 28/139 (20%)
Query: 486 GSFKCSCDAGFSGKYCHEN--------INDCK---HNPCQNGGTCVDKVNSFQCICRDGW 534
+ C C+ GFS IN+C C C + S+ C+C G+
Sbjct: 17 NATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGY 76
Query: 535 EGEICANSNQSGGSFKCSCDAGFSGKYCHENINDCKHN--PCQNGGTCVDKVNSFQCICR 592
E A + ++ C +++++C C + C + V S+ C CR
Sbjct: 77 EPVSGAKTFKNESENTC------------QDVDECSSGQHQCDSSTVCFNTVGSYSCRCR 124
Query: 593 DGWEGEICAN---NKNECE 608
GW+ CE
Sbjct: 125 PGWKPRHGIPNNQKDTVCE 143
Score = 40.2 bits (94), Expect = 4e-04
Identities = 30/152 (19%), Positives = 51/152 (33%), Gaps = 35/152 (23%)
Query: 504 NINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCH 563
+ C C +CV N+ C C G+ S + C
Sbjct: 1 DSRGCARW-CPQDSSCV---NATACRCNPGFSSF--------------SEIITTPMETC- 41
Query: 564 ENINDCK---HNPCQNGGTCVDKVNSFQCICRDGWEGEICANNK-----------NECE- 608
++IN+C C C + S+ C+C G+E A +EC
Sbjct: 42 DDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSS 101
Query: 609 -PNPCKNNGTCIDGHADFTCLCKNGWKGKTCT 639
+ C ++ C + ++C C+ GWK +
Sbjct: 102 GQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGI 133
Score = 38.6 bits (90), Expect = 0.002
Identities = 28/157 (17%), Positives = 45/157 (28%), Gaps = 41/157 (26%)
Query: 565 NINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNK--------NECEP---NPCK 613
+ C C +CV N+ C C G+ NEC C
Sbjct: 1 DSRGCARW-CPQDSSCV---NATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCG 56
Query: 614 NNGTCIDGHADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEG 673
C + + C+C G++ + + TC+ C+
Sbjct: 57 KFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSS--------------- 101
Query: 674 TSCHIGKLNACKSNPCKNGGTCVNTGDLYSCICKEGF 710
+ C + C NT YSC C+ G+
Sbjct: 102 -----------GQHQCDSSTVCFNTVGSYSCRCRPGW 127
Score = 36.3 bits (84), Expect = 0.009
Identities = 28/142 (19%), Positives = 42/142 (29%), Gaps = 28/142 (19%)
Query: 17 EPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDN-----------PCMMGPCGNGGQCK 65
C +C N C C GFS + + CG C
Sbjct: 7 RWCPQDSSCVNA----TACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCW 62
Query: 66 ETAGQFQCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHE-PCQNGGT 124
T G + CVC+PG+ + D++ C + + C +
Sbjct: 63 NTEGSYDCVCSPGYEPVSGAKTF-----------KNESENTCQDVDECSSGQHQCDSSTV 111
Query: 125 CENTAPDQYLCTCPEGFSGINC 146
C NT Y C C G+ +
Sbjct: 112 CFNT-VGSYSCRCRPGWKPRHG 132
Score = 32.1 bits (73), Expect = 0.26
Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 25/100 (25%)
Query: 371 QLCENGGTCVNTGDLYSCICKEGFEGPDCG--------QDINDCSPQ---PCYNGGKCVD 419
+ C +CVN +C C GF DIN+C+ C C +
Sbjct: 7 RWCPQDSSCVNA---TACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWN 63
Query: 420 GVNWFLCECAPGFAGPDCRIN-----------INECASNP 448
+ C C+PG+ ++EC+S
Sbjct: 64 TEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQ 103
Score = 30.9 bits (70), Expect = 0.68
Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 14/81 (17%)
Query: 14 GTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNP-----------CMMGP--CGN 60
+ C C NT Y C C G+ ++ C G C +
Sbjct: 50 LSKVSCGKFSDCWNT-EGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDS 108
Query: 61 GGQCKETAGQFQCVCAPGWTG 81
C T G + C C PGW
Sbjct: 109 STVCFNTVGSYSCRCRPGWKP 129
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating,
carbohydrate binding protein; 1.60A {Myxococcus xanthus}
PDB: 4fbv_A*
Length = 267
Score = 55.5 bits (133), Expect = 2e-08
Identities = 31/236 (13%), Positives = 57/236 (24%), Gaps = 36/236 (15%)
Query: 349 NGGECVDQVNGFRCICPVGFAGQLCENGGTCVNTGDLYSCICKEGFEGPDCGQDIND--- 405
+GG+ + + P+GF G L + + G D
Sbjct: 42 DGGKTLKGTMTYNGEGPIGFRGTLSSA--NNYTVENQWGGTSAPWQPGGVWVLGARDKQN 99
Query: 406 --CSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININE------CASNPCGYGKEILT 457
+GGK + G + E GF + ++ P G +
Sbjct: 100 IVAVSIKSNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGG-VWV 158
Query: 458 VQSRSRSPAYLCVSNPAYLVARCVSQSGG-------SFKCSCDAGFSGKYCHENIND--- 507
+ +R + S GG ++ GF G +
Sbjct: 159 LGTRG---------KQNVINVDAKSNDGGKTLSGTMTYNGEGPIGFRGTLTSPDTYTVEN 209
Query: 508 ---CKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGK 560
P GG + + Q + + + GF +
Sbjct: 210 QWGGSTAPWNPGGFWMIGARNGQNVVALNVASSDGGKTLAGTMIYNGEGPIGFRAR 265
Score = 51.6 bits (123), Expect = 2e-07
Identities = 25/176 (14%), Positives = 48/176 (27%), Gaps = 20/176 (11%)
Query: 228 CVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRC 287
VS +GG + Y E ++ D V G +
Sbjct: 102 AVSIKSNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYS------VENQWGGS----AAPW 151
Query: 288 NCSPGWT-GHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDIND----- 341
+ W G N+ + + G + ++ G+ G D
Sbjct: 152 HSGGVWVLGTRGKQNVINVDAKSNDGGKTLSGTMTYNGEGPIGFRGTLTSPDTYTVENQW 211
Query: 342 -CESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVNTGDLYSCICKEGFEG 396
++P GG + + + + A +GG + +Y+ GF
Sbjct: 212 GGSTAPWNPGGFWMIGARNGQNVVALNVASS---DGGKTLAGTMIYNGEGPIGFRA 264
Score = 47.0 bits (111), Expect = 9e-06
Identities = 30/242 (12%), Positives = 52/242 (21%), Gaps = 49/242 (20%)
Query: 487 SFKCSCDAGFSGKYCHENIND------CKHNPCQNGGTCVDKVNSFQCICRDGWEGEICA 540
++ GF G N P Q GG V Q I +
Sbjct: 52 TYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVWVLGARDKQNIVAVSIKSNDGG 111
Query: 541 NSNQSGGSFKCSCDAGFSGKYCHENIND------CKHNPCQNGGTCVDKVNSFQCICRDG 594
+ ++ GF + + P +GG V Q +
Sbjct: 112 KTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWVLGTRGKQNVINVD 171
Query: 595 WEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCTSKNGH------CDRG 648
+ + G + G + G++G +
Sbjct: 172 AK---------------SNDGGKTLSGTMTYNGEGPIGFRGTLTSPDTYTVENQWGGSTA 216
Query: 649 TCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGGTCVNTGDLYSCICKE 708
GG + S +GG + +Y+
Sbjct: 217 PWNPGGFWMIGARN--GQNVVALNVAS--------------SDGGKTLAGTMIYNGEGPI 260
Query: 709 GF 710
GF
Sbjct: 261 GF 262
Score = 46.2 bits (109), Expect = 1e-05
Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 16/158 (10%)
Query: 310 RHGSTCIDLVNDFHCACLPGYTGRTCQTDIND-----CESSPCVNGGECVDQVNGFRCIC 364
+ + N + P G D S +GG+ + +
Sbjct: 65 LSSANNYTVENQWGGTSAPWQPGGVWVLGARDKQNIVAVSIKSNDGGKTLTGTTTYNGEG 124
Query: 365 PVGFAGQLCENGGTCV-NTGDLYSCICKEG---FEGPDCGQDINDCSPQPCYNGGKCVDG 420
P+GF ++ + V N + G G Q++ + + +GGK + G
Sbjct: 125 PIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWVLGTRGKQNVINVDAK-SNDGGKTLSG 183
Query: 421 VNWFLCECAPGFAGPDCRININE------CASNPCGYG 452
+ E GF G + ++ P G
Sbjct: 184 TMTYNGEGPIGFRGTLTSPDTYTVENQWGGSTAPWNPG 221
Score = 45.5 bits (107), Expect = 3e-05
Identities = 41/257 (15%), Positives = 69/257 (26%), Gaps = 53/257 (20%)
Query: 413 NGGKCVDGVNWFLCECAPGFAGPDCRININECASNPCGYGKEILTVQSRSRSPAYLCVSN 472
+GGK + G + E GF G N N N G S
Sbjct: 42 DGGKTLKGTMTYNGEGPIGFRGTLSSAN-NYTVENQWG------------------GTSA 82
Query: 473 PAYLVARCVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRD 532
P Q GG + + +GG + ++
Sbjct: 83 PW--------QPGGVWVLGARDKQNIV--------AVSIKSNDGGKTLTGTTTYNGEGPI 126
Query: 533 GWEGEICANS-----NQSGGSFKCSCDAG--FSGKYCHENINDCKHNPCQNGGTCVDKVN 585
G++ E+ NQ GGS G G +N+ + +GG +
Sbjct: 127 GFKSEVTDGDTYSVENQWGGSAAPWHSGGVWVLGTRGKQNVINVDAK-SNDGGKTLSGTM 185
Query: 586 SFQCICRDGWEGEICANNKNE------CEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCT 639
++ G+ G + + + P G + G + + +
Sbjct: 186 TYNGEGPIGFRGTLTSPDTYTVENQWGGSTAPWNPGGFWMIGARNGQNVVAL----NVAS 241
Query: 640 SKNGHCDRGTCKHGGTC 656
S G GT + G
Sbjct: 242 SDGGKTLAGTMIYNGEG 258
Score = 43.9 bits (103), Expect = 8e-05
Identities = 28/199 (14%), Positives = 55/199 (27%), Gaps = 32/199 (16%)
Query: 515 NGGTCVDKVNSFQCICRDGWEGEICANS-----NQSGGSFKCSCDAGFSGKYCHENIND- 568
+GG + ++ G+ G + + + NQ GG+ G + N
Sbjct: 42 DGGKTLKGTMTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVWVLGARDKQNIV 101
Query: 569 CKHNPCQNGGTCVDKVNSFQCICRDGWEGEICAN------NKNECEPNPCKNNGTCIDGH 622
+GG + ++ G++ E+ N+ P + G + G
Sbjct: 102 AVSIKSNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWVLG- 160
Query: 623 ADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSC-----H 677
K S + GG ++ P + GT
Sbjct: 161 ----TRGKQNVINVDAKSND----------GGKTLSGTMTYNGEGPIGFRGTLTSPDTYT 206
Query: 678 IGKLNACKSNPCKNGGTCV 696
+ + P GG +
Sbjct: 207 VENQWGGSTAPWNPGGFWM 225
Score = 43.5 bits (102), Expect = 1e-04
Identities = 39/280 (13%), Positives = 61/280 (21%), Gaps = 57/280 (20%)
Query: 108 SDLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGF----SGINCEVVDNP--CMMGPCGNG 161
N +GG Y P GF S N V+N P G
Sbjct: 29 DKQNVVALDIKSDDGGKTL-KGTMTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPG 87
Query: 162 GQCKETAGQFQCVDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPP 221
G A Q + +G Y ++ + Y +N
Sbjct: 88 GVWVLGARDKQNI---VAVSIKSNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQW 144
Query: 222 CDDIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNL 281
+ P +GG V Q + + G L
Sbjct: 145 -----GGSAAPWHSGGVWV-----LGTRGKQNVINVD-------------AKSNDGGKTL 181
Query: 282 VGD--YRCNCSPGWTGHNCDVNINDCVGQ-------CRHGSTCIDLVNDFHCACLPGYTG 332
G Y G+ G + Q G + +
Sbjct: 182 SGTMTYNGEGPIGFRGTLTSPDTYTVENQWGGSTAPWNPGGFWMIGARNGQNVVALNVAS 241
Query: 333 RTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQL 372
+GG+ + + P+GF +L
Sbjct: 242 S---------------DGGKTLAGTMIYNGEGPIGFRARL 266
Score = 30.1 bits (67), Expect = 2.7
Identities = 13/103 (12%), Positives = 25/103 (24%), Gaps = 22/103 (21%)
Query: 614 NNGTCIDGHADFTCLCKNGWKGKTCTSKNGH------CDRGTCKHGGTCADLGSSFFCHC 667
+ G + G + G++G ++ N + GG
Sbjct: 42 DGGKTLKGTMTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVWV---------- 91
Query: 668 PPDWEGTSCHIGKLNACKSNPCKNGGTCVNTGDLYSCICKEGF 710
+ S +GG + Y+ GF
Sbjct: 92 ------LGARDKQNIVAVSIKSNDGGKTLTGTTTYNGEGPIGF 128
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 55.8 bits (134), Expect = 3e-08
Identities = 46/337 (13%), Positives = 83/337 (24%), Gaps = 55/337 (16%)
Query: 124 TCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVDHDHCNPNP 183
C + + + Y + SG+ C+ D+ P +G PN
Sbjct: 165 ECMHCSGENYDGKISKTMSGLECQAWDSQS---PHAHG-------------YIPSKFPNK 208
Query: 184 CLNGAPCFNTQADY--YCHCT-EDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQNGGTCV 240
L C N + +C T + + C PR P +C+ +N
Sbjct: 209 NLKKNYCRNPDRELRPWCFTTDPNKRWELCDIPRCTTPPPSSGPTYQCLKGTGEN----- 263
Query: 241 DLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDV 300
Y+ G CQ+ + + + + + C G C
Sbjct: 264 -----YRGNVAVTVSGHTCQHWSAQTPHTHNRTPENFPCKNLDENYCRNPDGKRAPWC-- 316
Query: 301 NINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGF 360
+ + C P T + T V +
Sbjct: 317 -------HTTNSQVRWEYCKIPSCDSSPVSTEQLAPT---APPELTPVVQDCYHGDGQSY 366
Query: 361 RCICPVGFAGQLCENGGTCVNT-----------GDLYSCICK--EGFEGPDCGQDINDCS 407
R G+ C++ + L C+ + +GP C
Sbjct: 367 RGTSSTTTTGKKCQSWSSMTPHRHQKTPENYPNAGLTMNYCRNPDADKGPWCFTTDPSVR 426
Query: 408 PQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININEC 444
+ C N KC + + +C
Sbjct: 427 WEYC-NLKKCSGTEASVVAPPPVVLLPDVETPSEEDC 462
Score = 45.4 bits (107), Expect = 6e-05
Identities = 29/225 (12%), Positives = 56/225 (24%), Gaps = 8/225 (3%)
Query: 465 PAYLCVSNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDK-V 523
P + +C+ +G +++ + SG C H + K +
Sbjct: 241 PRCTTPPPSSGPTYQCLKGTGENYRGNVAVTVSGHTCQHWSAQTPHTHNRTPENFPCKNL 300
Query: 524 NSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTC--V 581
+ C DG C +N C + S E +
Sbjct: 301 DENYCRNPDGKRAPWCHTTNSQVRWEYCKIPSCDSSPVSTEQLAPTAPPELTPVVQDCYH 360
Query: 582 DKVNSFQCICRDGWEGEICA--NNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCT 639
S++ G+ C ++ N ++ C + KG C
Sbjct: 361 GDGQSYRGTSSTTTTGKKCQSWSSMTPHRHQKTPENYPNAGLTMNY-CRNPDADKGPWCF 419
Query: 640 SKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNAC 684
+ + C + C+ + PP C
Sbjct: 420 TTDPSVRWEYC-NLKKCSG-TEASVVAPPPVVLLPDVETPSEEDC 462
Score = 33.1 bits (75), Expect = 0.39
Identities = 27/216 (12%), Positives = 37/216 (17%), Gaps = 14/216 (6%)
Query: 16 HEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQF-QCV 74
C + Y SG C+ C
Sbjct: 247 PPSSGPTYQCLKGTGENYRGNVAVTVSGHTCQHWSAQTPHTHNRTPENFPCKNLDENYCR 306
Query: 75 CAPGWTGPTCKIKHNFFP-YLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGTCENTAPDQY 133
G P C ++ IP S L E C + Y
Sbjct: 307 NPDGKRAPWCHTTNSQVRWEYCKIPSCDSSPVSTEQLAPTAPPELTPVVQDCYHGDGQSY 366
Query: 134 LCTCPEGFSGINCEVVD----------NPCMMGPCGNGGQCKETAGQFQ--CVDHDHCNP 181
T +G C+ C+ C D
Sbjct: 367 RGTSSTTTTGKKCQSWSSMTPHRHQKTPENYPNAGLTMNYCRNPDADKGPWCFTTDPSVR 426
Query: 182 NPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKC 217
N C T+A + C
Sbjct: 427 WEYCNLKKCSGTEASVVAPPPVVLLPDVETPSEEDC 462
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 51.2 bits (123), Expect = 4e-08
Identities = 29/122 (23%), Positives = 40/122 (32%), Gaps = 10/122 (8%)
Query: 262 DADECQKSPCVNAALGCTNL-VGDYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVN 320
D C ++ C C L Y C C+ G+ + + D
Sbjct: 3 PVDPCFRANC---EYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNT 59
Query: 321 DFHCACLPGYT---GRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGG 377
C C GY G C DI++CE + G C + F CIC A + G
Sbjct: 60 QASCECPEGYILDDGFICT-DIDECE-NGGFCSGVCHNLPGTFECICGPDSALAG-QIGT 116
Query: 378 TC 379
C
Sbjct: 117 DC 118
Score = 38.1 bits (89), Expect = 0.002
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 7/113 (6%)
Query: 564 ENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHA 623
E ++ C C+ +D S+ C+C +G+ ++ + N C D +
Sbjct: 2 EPVDPCFRANCEYQCQPLD-QTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADC-DPNT 59
Query: 624 DFTCLCKNGWK---GKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEG 673
+C C G+ G CT + + G C C +L +F C C PD
Sbjct: 60 QASCECPEGYILDDGFICTDIDECENGGFCSG--VCHNLPGTFECICGPDSAL 110
Score = 36.2 bits (84), Expect = 0.006
Identities = 28/136 (20%), Positives = 39/136 (28%), Gaps = 33/136 (24%)
Query: 9 DLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETA 68
++ C C+ C+ YLC C EGF+ I E C +
Sbjct: 3 PVDPCFRA-NCEYQ--CQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADC-DPN 58
Query: 69 GQFQCVCAPGWT---GPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGTC 125
Q C C G+ G C +D++ C C G C
Sbjct: 59 TQASCECPEGYILDDGFIC-----------------------TDIDECENGGFCS--GVC 93
Query: 126 ENTAPDQYLCTCPEGF 141
N P + C C
Sbjct: 94 HNL-PGTFECICGPDS 108
Score = 35.4 bits (82), Expect = 0.013
Identities = 18/97 (18%), Positives = 27/97 (27%), Gaps = 23/97 (23%)
Query: 480 CVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGE-- 537
C S+ C C GF+ + N C D C C +G+ +
Sbjct: 16 CQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADC-DPNTQASCECPEGYILDDG 74
Query: 538 -----------------ICANSNQSGGSFKCSCDAGF 557
+C N G+F+C C
Sbjct: 75 FICTDIDECENGGFCSGVCHNLP---GTFECICGPDS 108
Score = 33.9 bits (78), Expect = 0.043
Identities = 25/113 (22%), Positives = 31/113 (27%), Gaps = 19/113 (16%)
Query: 109 DLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETA 168
++ C C+ C+ YLC C EGF+ I E C
Sbjct: 3 PVDPCFRA-NCEYQ--CQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNT 59
Query: 169 G-------------QFQCVDHDHC-NPNPCLNGAPCFNTQADYYCHCTEDWEG 207
F C D D C N C C N + C C D
Sbjct: 60 QASCECPEGYILDDGFICTDIDECENGGFC--SGVCHNLPGTFECICGPDSAL 110
Score = 31.6 bits (72), Expect = 0.31
Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 645 CDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGGTCVNTGDLYSC 704
C R C++ D S + C C + N C SC
Sbjct: 7 CFRANCEYQCQPLDQTS-YLCVCAEGFAPIPHE-PHRCQMFCNQTACPADCDPNTQ-ASC 63
Query: 705 ICKEGFV 711
C EG++
Sbjct: 64 ECPEGYI 70
Score = 31.2 bits (71), Expect = 0.34
Identities = 19/107 (17%), Positives = 28/107 (26%), Gaps = 4/107 (3%)
Query: 605 NECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFF 664
+ C C + C+C G+ C D +
Sbjct: 5 DPCFRANC-EYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADC-DPNTQAS 62
Query: 665 CHCPPDWEGTSCHI-GKLNACKSNPCKNGGTCVNTGDLYSCICKEGF 710
C CP + I ++ C N G C N + CIC
Sbjct: 63 CECPEGYILDDGFICTDIDEC-ENGGFCSGVCHNLPGTFECICGPDS 108
Score = 30.4 bits (69), Expect = 0.70
Identities = 15/73 (20%), Positives = 20/73 (27%), Gaps = 3/73 (4%)
Query: 379 CVNTGDLYSCICKEGFEGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCR 438
Y C+C EGF C CEC G+ D
Sbjct: 17 QPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQ-ASCECPEGYILDDGF 75
Query: 439 --ININECASNPC 449
+I+EC +
Sbjct: 76 ICTDIDECENGGF 88
Score = 30.0 bits (68), Expect = 0.88
Identities = 23/139 (16%), Positives = 39/139 (28%), Gaps = 33/139 (23%)
Query: 401 QDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININECASNPCGYGKEILTVQS 460
+ ++ C C +LC CA GFA + + N
Sbjct: 2 EPVDPCFRANC-EYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACP-------- 52
Query: 461 RSRSPAYLCVSNPAYLVARCVSQSGGSFKCSCDAGFS---GKYCHENINDCKHNPCQNGG 517
C C G+ G C +I++C++ + G
Sbjct: 53 -------------------ADCDPNTQASCECPEGYILDDGFIC-TDIDECENGGFCS-G 91
Query: 518 TCVDKVNSFQCICRDGWEG 536
C + +F+CIC
Sbjct: 92 VCHNLPGTFECICGPDSAL 110
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 47.2 bits (113), Expect = 4e-07
Identities = 22/85 (25%), Positives = 30/85 (35%), Gaps = 10/85 (11%)
Query: 173 CVDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNP 232
VD D C C NT Y C C + C D DEC
Sbjct: 2 AVDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNE----------CVDTDECSVGN 51
Query: 233 CQNGGTCVDLVDGYKCECTQAWEGS 257
GTC +++ G++C C + +E
Sbjct: 52 PCGNGTCKNVIGGFECTCEEGFEPG 76
Score = 44.5 bits (106), Expect = 4e-06
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCD-VNINDC-VGQCRHGSTCIDLV 319
D DEC++ C N G YRC C G+ + V+ ++C VG TC +++
Sbjct: 4 DMDECKEPDVCKHGQ-CINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVI 62
Query: 320 NDFHCACLPGYT---GRTCQ 336
F C C G+ TC+
Sbjct: 63 GGFECTCEEGFEPGPMMTCE 82
Score = 43.0 bits (102), Expect = 1e-05
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 564 ENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICA-NNKNECEPNPCKNNGTCIDGH 622
++++CK G C++ S++C C G+ + +EC NGTC +
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVI 62
Query: 623 ADFTCLCKNGWKG 635
F C C+ G++
Sbjct: 63 GGFECTCEEGFEP 75
Score = 42.2 bits (100), Expect = 2e-05
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 9 DLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVD-NPCMMGPCGNGGQCKET 67
D++ C + C++G C NT Y C CP G+ E VD + C +G G CK
Sbjct: 4 DMDECKEPDVCKHG-QCINT-DGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNV 61
Query: 68 AGQFQCVCAPGWTG 81
G F+C C G+
Sbjct: 62 IGGFECTCEEGFEP 75
Score = 41.4 bits (98), Expect = 5e-05
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 22/95 (23%)
Query: 503 ENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYC 562
++++CK G C++ S++C C G+ +G C
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYIL---------------------AGNEC 41
Query: 563 HENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEG 597
+ ++C GTC + + F+C C +G+E
Sbjct: 42 -VDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEP 75
Score = 39.5 bits (93), Expect = 2e-04
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 486 GSFKCSCDAGFSGKYCH-ENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEG 536
GS++C C G+ + ++C GTC + + F+C C +G+E
Sbjct: 24 GSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEP 75
Score = 37.9 bits (89), Expect = 8e-04
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 13/77 (16%)
Query: 337 TDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQL--------CENG-----GTCVNTG 383
D+++C+ G+C++ +RC CP G+ C G GTC N
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVI 62
Query: 384 DLYSCICKEGFEGPDCG 400
+ C C+EGFE
Sbjct: 63 GGFECTCEEGFEPGPMM 79
Score = 36.0 bits (84), Expect = 0.003
Identities = 17/66 (25%), Positives = 23/66 (34%)
Query: 645 CDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGGTCVNTGDLYSC 704
C G C + S+ C CP + + C GTC N + C
Sbjct: 8 CKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVIGGFEC 67
Query: 705 ICKEGF 710
C+EGF
Sbjct: 68 TCEEGF 73
Score = 35.6 bits (83), Expect = 0.004
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 605 NECEPNPCKNNGTCIDGHADFTCLCKNGWK--GKTCTSKNGHCDRGTCKHGGTCADLGSS 662
+EC+ +G CI+ + C C G+ G C + C G GTC ++
Sbjct: 6 DECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTD-ECSVGNPCGNGTCKNVIGG 64
Query: 663 FFCHCPPDWEGTSCH 677
F C C +E
Sbjct: 65 FECTCEEGFEPGPMM 79
Score = 31.8 bits (73), Expect = 0.13
Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 27/99 (27%)
Query: 109 DLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETA 168
D++ C + C++G C NT Y C CP G+
Sbjct: 4 DMDECKEPDVCKHG-QCINT-DGSYRCECPFGYILAGN---------------------- 39
Query: 169 GQFQCVDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEG 207
+CVD D C+ C N + C C E +E
Sbjct: 40 ---ECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEP 75
Score = 31.0 bits (71), Expect = 0.19
Identities = 26/93 (27%), Positives = 32/93 (34%), Gaps = 27/93 (29%)
Query: 53 CMMGPCGNGGQCKETAGQFQCVCAPGWT--GPTCKIKHNFFPYLQFIPLTTSLFRLLSDL 110
C GQC T G ++C C G+ G C D
Sbjct: 8 CKEPDVCKHGQCINTDGSYRCECPFGYILAGNEC-----------------------VDT 44
Query: 111 NYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSG 143
+ C PC N GTC+N + CTC EGF
Sbjct: 45 DECSVGNPCGN-GTCKNV-IGGFECTCEEGFEP 75
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 46.9 bits (112), Expect = 5e-07
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 224 DIDECVSNPCQNG-GTCVDLVDGYKCECTQAWEGSNCQ----YDADECQKSPCVNAALGC 278
DIDEC +P G G CV+ ++C+C + +E D DECQ+ P + C
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVC 61
Query: 279 TNLVGDYRCNCSPGWTGH 296
N G YRC C PG
Sbjct: 62 HNTEGSYRCECPPGHQLS 79
Score = 40.7 bits (96), Expect = 1e-04
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 14/89 (15%)
Query: 298 CDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYT-----GRTCQTDINDCESSPCV-NGG 351
C ++ + C C++ DF C C GY + C DI++C+ P + GG
Sbjct: 6 CRISPDLC-----GRGQCVNTPGDFECKCDEGYESGFMMMKNCM-DIDECQRDPLLCRGG 59
Query: 352 ECVDQVNGFRCICPVGFAGQLCENGGTCV 380
C + +RC CP G QL N C+
Sbjct: 60 VCHNTEGSYRCECPPGH--QLSPNISACI 86
Score = 37.7 bits (88), Expect = 0.001
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 180 NPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQ-NGGT 238
+P+ C G C NT D+ C C E +E C DIDEC +P GG
Sbjct: 9 SPDLCGRGQ-CVNTPGDFECKCDEGYESGFM-------MMKNCMDIDECQRDPLLCRGGV 60
Query: 239 CVDLVDGYKCECTQAWEGS 257
C + Y+CEC + S
Sbjct: 61 CHNTEGSYRCECPPGHQLS 79
Score = 33.0 bits (76), Expect = 0.041
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 8 SDLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFS-----GINCEVVDNPCMMGPCG-NG 61
+D++ C G C NT P + C C EG+ NC +D C P G
Sbjct: 1 TDIDECRISPDLCGRGQCVNT-PGDFECKCDEGYESGFMMMKNCMDIDE-CQRDPLLCRG 58
Query: 62 GQCKETAGQFQCVCAPGWT 80
G C T G ++C C PG
Sbjct: 59 GVCHNTEGSYRCECPPGHQ 77
Score = 33.0 bits (76), Expect = 0.042
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 486 GSFKCSCDAGFSGKYCH----ENINDCKHNPCQ-NGGTCVDKVNSFQCICRDGWE 535
G F+C CD G+ + +I++C+ +P GG C + S++C C G +
Sbjct: 23 GDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQ 77
Score = 33.0 bits (76), Expect = 0.042
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 547 GSFKCSCDAGFSGKYCH----ENINDCKHNPCQ-NGGTCVDKVNSFQCICRDGWE 596
G F+C CD G+ + +I++C+ +P GG C + S++C C G +
Sbjct: 23 GDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQ 77
Score = 31.5 bits (72), Expect = 0.16
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 377 GTCVNTGDLYSCICKEGFEGPDCG----QDINDCSPQPCY-NGGKCVDGVNWFLCECAPG 431
G CVNT + C C EG+E DI++C P GG C + + CEC PG
Sbjct: 16 GQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPG 75
Query: 432 F 432
Sbjct: 76 H 76
Score = 29.2 bits (66), Expect = 0.96
Identities = 25/108 (23%), Positives = 33/108 (30%), Gaps = 28/108 (25%)
Query: 108 SDLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKET 167
+D++ C G C NT P + C C EG+
Sbjct: 1 TDIDECRISPDLCGRGQCVNT-PGDFECKCDEGYES----------------------GF 37
Query: 168 AGQFQCVDHDHCNPNPCL-NGAPCFNTQADYYCHCTE----DWEGKNC 210
C+D D C +P L G C NT+ Y C C C
Sbjct: 38 MMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC 85
Score = 28.4 bits (64), Expect = 2.2
Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 22/89 (24%)
Query: 566 INDCKHNPCQNG-GTCVDKVNSFQCICRDGWEGEI-----------CANNKNECEPNPCK 613
I++C+ +P G G CV+ F+C C +G+E C + C
Sbjct: 3 IDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCR----- 57
Query: 614 NNGTCIDGHADFTCLCKNGWK----GKTC 638
G C + + C C G + C
Sbjct: 58 -GGVCHNTEGSYRCECPPGHQLSPNISAC 85
Score = 28.0 bits (63), Expect = 2.3
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 605 NECEPNPCK-NNGTCIDGHADFTCLCKNGWKGKTCTSKNGH----CDRGTCK-HGGTCAD 658
+EC +P G C++ DF C C G++ KN C R GG C +
Sbjct: 4 DECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHN 63
Query: 659 LGSSFFCHCPPDWEGTS 675
S+ C CPP + +
Sbjct: 64 TEGSYRCECPPGHQLSP 80
Score = 26.5 bits (59), Expect = 8.1
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 402 DINDCSPQPCYNG-GKCVDGVNWFLCECAPGFAGPDCR----ININECASNPCG 450
DI++C P G G+CV+ F C+C G+ ++I+EC +P
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLL 55
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 51.2 bits (122), Expect = 6e-07
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 328 PGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPV-GFAGQLCENGGTCVNTGDLY 386
G R C+ C+ C N G C+ Q +GF C C + F+G LC + GT
Sbjct: 174 NGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGG 233
Query: 387 SCIC 390
I
Sbjct: 234 GQIT 237
Score = 49.2 bits (117), Expect = 3e-06
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 562 CHENINDCKHNPCQNGGTCVDKVNSFQCICRD-GWEGEICANNKNECEPNPCKN 614
C C+ + C N G C+ + + F C C + G +C + +
Sbjct: 181 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGG 234
Score = 48.8 bits (116), Expect = 3e-06
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 501 CHENINDCKHNPCQNGGTCVDKVNSFQCICRD-GWEGEICANSNQSGGSFKC 551
C C+ + C N G C+ + + F C C + G +C + + K
Sbjct: 181 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 232
Score = 48.5 bits (115), Expect = 5e-06
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 393 GFEGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCECA-PGFAGPDCRININECASNPC 449
G C C C N G C+ + F C+C+ F+GP C +
Sbjct: 175 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 232
Score = 47.7 bits (113), Expect = 1e-05
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 226 DECVSNPCQNGGTCVDLVDGYKCECTQ-AWEGSNCQYDADECQKSPC 271
C + C N G C+ DG+ C+C+ ++ G C S
Sbjct: 186 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 232
Score = 46.9 bits (111), Expect = 1e-05
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 40 GFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVCA-PGWTGPTCKIKHNFFPYLQ 95
G CE C C N G C + F C C+ ++GP C + + +
Sbjct: 175 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSK 231
Score = 46.2 bits (109), Expect = 2e-05
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 600 CANNKNECEPNPCKNNGTCIDGHADFTCLCKN-GWKGKTCTSKNGHCDRGTC 650
C C+ + C N G C+ F+C C + G C
Sbjct: 181 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 232
Score = 41.5 bits (97), Expect = 8e-04
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 631 NGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCP-PDWEGTSCHI 678
NG + C + C +C + G C F C C + G C+
Sbjct: 174 NGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCND 222
Score = 40.4 bits (94), Expect = 0.002
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Query: 290 SPGWTGHNCDVNINDCVGQ-CRHGSTCIDLVNDFHCAC-LPGYTGRTCQTDINDCESSPC 347
G C+ C C + C+ + F C C + ++G C S
Sbjct: 173 CNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 232
Score = 40.4 bits (94), Expect = 0.002
Identities = 17/74 (22%), Positives = 20/74 (27%), Gaps = 5/74 (6%)
Query: 341 DCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVNTGDLYSCICKE-GFEGPDC 399
D S G+ G C C N G C+ D +SC C F GP C
Sbjct: 165 DLISDALFCNGQIERGCEGPSTTC----QEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLC 220
Query: 400 GQDINDCSPQPCYN 413
Sbjct: 221 NDPGTTYIFSKGGG 234
Score = 40.4 bits (94), Expect = 0.002
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 682 NACKSNPCKNGGTCVNTGDLYSCICKEG 709
C+ + C N G C+ D +SC C
Sbjct: 186 TTCQEDSCSNQGVCLQQWDGFSCDCSMT 213
Score = 38.4 bits (89), Expect = 0.007
Identities = 14/66 (21%), Positives = 16/66 (24%)
Query: 140 GFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVDHDHCNPNPCLNGAPCFNTQADYYC 199
G CE C C N G C + F C P N +
Sbjct: 175 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGG 234
Query: 200 HCTEDW 205
T W
Sbjct: 235 QITYKW 240
Score = 36.5 bits (84), Expect = 0.028
Identities = 12/49 (24%), Positives = 14/49 (28%), Gaps = 3/49 (6%)
Query: 11 NYCGTHEPCQNGGTCENTAPDQYLCTCPE-GFSGINCEVVDNPCMMGPC 58
C C N G C D + C C FSG C +
Sbjct: 186 TTCQED-SCSNQGVCLQQW-DGFSCDCSMTSFSGPLCNDPGTTYIFSKG 232
Score = 36.5 bits (84), Expect = 0.028
Identities = 12/49 (24%), Positives = 14/49 (28%), Gaps = 3/49 (6%)
Query: 111 NYCGTHEPCQNGGTCENTAPDQYLCTCPE-GFSGINCEVVDNPCMMGPC 158
C C N G C D + C C FSG C +
Sbjct: 186 TTCQED-SCSNQGVCLQQW-DGFSCDCSMTSFSGPLCNDPGTTYIFSKG 232
Score = 35.8 bits (82), Expect = 0.047
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 257 SNCQYDADECQKSPCVNAALGCTNLVGDYRCNCS-PGWTGHNCDVNINDCVGQCRHGS 313
C+ + CQ+ C N + C + C+CS ++G C+ + G
Sbjct: 179 RGCEGPSTTCQEDSCSNQGV-CLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQ 235
Score = 30.7 bits (69), Expect = 1.7
Identities = 13/88 (14%), Positives = 18/88 (20%), Gaps = 27/88 (30%)
Query: 429 APGFAGPDCRININECASNPCGYGKEILTVQSRSRSPAYLCVSNPAYLVARCVSQSGGSF 488
G C C + C C+ Q F
Sbjct: 173 CNGQIERGCEGPSTTCQEDSCSNQ-------------------------GVCL-QQWDGF 206
Query: 489 KCSCDA-GFSGKYCHENINDCKHNPCQN 515
C C FSG C++ +
Sbjct: 207 SCDCSMTSFSGPLCNDPGTTYIFSKGGG 234
Score = 30.4 bits (68), Expect = 2.4
Identities = 10/52 (19%), Positives = 15/52 (28%), Gaps = 11/52 (21%)
Query: 177 DHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDEC 228
C + C N C + W+G +C P C+D
Sbjct: 186 TTCQEDSCSNQG-----------VCLQQWDGFSCDCSMTSFSGPLCNDPGTT 226
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 45.8 bits (107), Expect = 1e-05
Identities = 23/179 (12%), Positives = 45/179 (25%), Gaps = 15/179 (8%)
Query: 179 CNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQNGGT 238
+ + C C E + + + C
Sbjct: 7 VTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENP 66
Query: 239 CVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAA---LGCTNLVGDYRCNCSPGWTG 295
V+ Y C C + + D CQ C + + + + C+C+ G
Sbjct: 67 DPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVP 126
Query: 296 HNCDVNINDCVGQCRHGS-------TCIDLVNDFHCACLPGYTG----RTCQTDINDCE 343
+ D G+ C ++ + C C+ G+T C +
Sbjct: 127 NPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCL-GPHHHH 184
Score = 42.7 bits (99), Expect = 1e-04
Identities = 29/160 (18%), Positives = 37/160 (23%), Gaps = 20/160 (12%)
Query: 572 NPCQNGGTCVDKVNSFQCICRDGWEGE-----------ICANNKNECEPNPCKNNGTCID 620
+ G V N F C+C +G C
Sbjct: 10 DTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPA 69
Query: 621 GHADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGG----TCADLGSSFFCHCPPDWEGTS- 675
+ C C G+ T C C G S C C
Sbjct: 70 QVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPE 129
Query: 676 ----CHIGKLNACKSNPCKNGGTCVNTGDLYSCICKEGFV 711
C AC+ + C N +Y C C EGF
Sbjct: 130 DEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFT 169
Score = 39.2 bits (90), Expect = 0.002
Identities = 24/175 (13%), Positives = 43/175 (24%), Gaps = 40/175 (22%)
Query: 278 CTNLVGDYRCNCSPGWTGHNCDV------------NINDCVGQCRHGSTCIDLVNDFHCA 325
+ + C C+ G + + + VN + C
Sbjct: 18 LVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCG 77
Query: 326 CLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVNTGDL 385
C+ GYT ++ C+ C GEC+ ++
Sbjct: 78 CIEGYTLXEDTCVLDVCQYXNCGESGECI----------------------VEYLSEIQS 115
Query: 386 YSCICKEGFEGPDCGQ------DINDCSPQPCYNGGKCVDGVNWFLCECAPGFAG 434
C C G + C + C + + C+C GF
Sbjct: 116 AGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTF 170
Score = 38.1 bits (87), Expect = 0.004
Identities = 25/216 (11%), Positives = 50/216 (23%), Gaps = 39/216 (18%)
Query: 402 DINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININECASNPCGYGKEILTVQSR 461
+ + + G+ V N F C C G N C
Sbjct: 3 EASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEX---NECXXETLGXACGEF 59
Query: 462 SRSPAYLCVSNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGG---- 517
+ + + C C G++ ++ C++ C G
Sbjct: 60 GQCIENPDPAQV------------NMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIV 107
Query: 518 TCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNG 577
+ ++ S C C G C+ +
Sbjct: 108 EYLSEIQSAGCSCAIGXVPNPEDE-----------------XXCTXTGETACQLXCNTDN 150
Query: 578 GTCVDKVNSFQCICRDGWEGEICANN---KNECEPN 610
C + + C C +G+ + N + +
Sbjct: 151 EVCXNVEGVYXCQCMEGFTFDXEXNVCLGPHHHHHH 186
Score = 37.7 bits (86), Expect = 0.006
Identities = 26/173 (15%), Positives = 46/173 (26%), Gaps = 22/173 (12%)
Query: 511 NPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHENINDCK 570
+ G V N F C+C +G +++ C G C E +
Sbjct: 10 DTICXNGQLVQMSNHFXCMCNEGLVH-----LSENTCEEXNECXXETLGXACGEFGQCIE 64
Query: 571 HNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNG----TCIDGHADFT 626
+ +VN + C C +G+ + C+ C +G +
Sbjct: 65 N-------PDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAG 117
Query: 627 CLCKNGWKGKTCTS------KNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEG 673
C C G C C ++ + C C +
Sbjct: 118 CSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTF 170
Score = 29.6 bits (65), Expect = 2.4
Identities = 27/214 (12%), Positives = 45/214 (21%), Gaps = 43/214 (20%)
Query: 57 PCGNGGQCKETAGQFQCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTH 116
GQ + + F C+C G + +
Sbjct: 11 TICXNGQLVQMSNHFXCMCNEGLVHLSENT-------------CEEXNECXXETLGXACG 57
Query: 117 EPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVDH 176
E Q + + Y C C EG++ V + C CG G+C
Sbjct: 58 EFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVE--------- 108
Query: 177 DHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQNG 236
+ C C C +
Sbjct: 109 -------------YLSEIQSAGCSCAIGXVPNPEDEXXCT-----XTGETACQLXCNTDN 150
Query: 237 GTCVDLVDGYKCECTQAWEGS---NCQYDADECQ 267
C ++ Y C+C + + N
Sbjct: 151 EVCXNVEGVYXCQCMEGFTFDXEXNVCLGPHHHH 184
Score = 28.5 bits (62), Expect = 6.9
Identities = 14/119 (11%), Positives = 27/119 (22%), Gaps = 14/119 (11%)
Query: 605 NECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCTS-----------KNGHCDRGTCKHG 653
+ + NG + F C+C G + + C
Sbjct: 5 SAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIE 64
Query: 654 GTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGG---TCVNTGDLYSCICKEG 709
+ + C C + N ++G ++ C C G
Sbjct: 65 NPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIG 123
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 43.5 bits (103), Expect = 2e-05
Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 14/97 (14%)
Query: 312 GSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQ 371
++D+ + N+C + C D G+ C+CP GF
Sbjct: 3 HHHHHHPMSDYDIPTTENLYFQGAM-GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLV 61
Query: 372 L---------CENGGT----CVNTGDLYSCICKEGFE 395
C++ T CVN Y C C+EGF+
Sbjct: 62 AQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQ 98
Score = 43.1 bits (102), Expect = 2e-05
Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 18/113 (15%)
Query: 185 LNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQNGGTCVDLVD 244
+ + +DY TE+ + +EC+ N C DL
Sbjct: 1 MKHHHHHHPMSDYDIPTTENLYFQGAM------------GTNECLDNNGGCSYVCNDLKI 48
Query: 245 GYKCECTQAWEGSN---CQYDADECQKSPCVNAALGCTNLVGDYRCNCSPGWT 294
GY+C C ++ C+ D DECQ + C NL G Y+C C G+
Sbjct: 49 GYECLCPDGFQLVAQRRCE-DIDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQ 98
Score = 37.3 bits (87), Expect = 0.002
Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 17/88 (19%)
Query: 486 GSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEI------- 538
+ + N+C N C D ++C+C DG++
Sbjct: 11 SDYDIPTTENLYFQGA-MGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDI 69
Query: 539 --CANSNQ-------SGGSFKCSCDAGF 557
C + + G +KC C+ GF
Sbjct: 70 DECQDPDTCSQLCVNLEGGYKCQCEEGF 97
Score = 36.9 bits (86), Expect = 0.003
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 16/99 (16%)
Query: 348 VNGGECVDQVNGFRCICPVGFAGQLCE--------NGG---TCVNTGDLYSCICKEGFEG 396
+ ++ + Q NGG C + Y C+C +GF+
Sbjct: 1 MKHHHHHHPMSDYDIPTTENLYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQL 60
Query: 397 PDCG--QDINDCS-PQPCYNGGKCVDGVNWFLCECAPGF 432
+DI++C P C CV+ + C+C GF
Sbjct: 61 VAQRRCEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGF 97
Score = 34.6 bits (80), Expect = 0.018
Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 21/100 (21%)
Query: 515 NGGTCVDKVNSFQCICRDGWEGEICANSN--------------QSGGSFKCSCDAGF--- 557
++ + + + +N ++C C GF
Sbjct: 2 KHHHHHHPMSDYDIPTTENLYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLV 61
Query: 558 SGKYCHENINDCKHN-PCQNGGTCVDKVNSFQCICRDGWE 596
+ + C E+I++C+ C CV+ ++C C +G++
Sbjct: 62 AQRRC-EDIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQ 98
Score = 33.1 bits (76), Expect = 0.074
Identities = 10/58 (17%), Positives = 15/58 (25%), Gaps = 2/58 (3%)
Query: 653 GGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGGTCVNTGDLYSCICKEGF 710
S + + N C N C + Y C+C +GF
Sbjct: 3 HHHHHHPMSDYDIPTTENLYFQGAM--GTNECLDNNGGCSYVCNDLKIGYECLCPDGF 58
Score = 32.7 bits (75), Expect = 0.099
Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 3/99 (3%)
Query: 614 NNGTCIDGHADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWE- 672
+ +D+ + N C C DL + C CP ++
Sbjct: 2 KHHHHHHPMSDYDIPTTENLYFQGAMGTN-ECLDNNGGCSYVCNDLKIGYECLCPDGFQL 60
Query: 673 GTSCHIGKLNACKSNPCKNGGTCVNTGDLYSCICKEGFV 711
++ C +P CVN Y C C+EGF
Sbjct: 61 VAQRRCEDIDEC-QDPDTCSQLCVNLEGGYKCQCEEGFQ 98
Score = 31.9 bits (73), Expect = 0.16
Identities = 20/124 (16%), Positives = 32/124 (25%), Gaps = 31/124 (25%)
Query: 21 NGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVCAPGWT 80
+ Y E + C+ G C + ++C+C G+
Sbjct: 2 KHHHHHHP-MSDYDIPTTENLYFQGAMGTN-ECLDNNGGCSYVCNDLKIGYECLCPDGFQ 59
Query: 81 ---GPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGTCENTAPDQYLCTC 137
C+ D++ C + C C N Y C C
Sbjct: 60 LVAQRRCE-----------------------DIDECQDPDTCS--QLCVNL-EGGYKCQC 93
Query: 138 PEGF 141
EGF
Sbjct: 94 EEGF 97
Score = 30.0 bits (68), Expect = 0.90
Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 34/127 (26%)
Query: 413 NGGKCVDGVNWFLCECAPGFAGPDCRININECASNPCGYGKEILTVQSRSRSPAYLCVSN 472
++ + + NEC N G +Y+C
Sbjct: 2 KHHHHHHPMSDYDIPTTENLYFQGA-MGTNECLDNNGG--------------CSYVCNDL 46
Query: 473 PAYLVARCVSQSGGSFKCSCDAGF---SGKYCHENINDCKHN-PCQNGGTCVDKVNSFQC 528
++C C GF + + C E+I++C+ C CV+ ++C
Sbjct: 47 K------------IGYECLCPDGFQLVAQRRC-EDIDECQDPDTCS--QLCVNLEGGYKC 91
Query: 529 ICRDGWE 535
C +G++
Sbjct: 92 QCEEGFQ 98
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 41.1 bits (97), Expect = 7e-05
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 12/87 (13%)
Query: 298 CDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYT----GRTCQTDINDCESSPCVNGGEC 353
C + + C C ++ DF C C GY ++C+ DI++C + C C
Sbjct: 6 CSLKPSICGTA-----VCKNIPGDFECECPEGYRYNLKSKSCE-DIDECSENMC--AQLC 57
Query: 354 VDQVNGFRCICPVGFAGQLCENGGTCV 380
V+ G+ C C +L ++ +C
Sbjct: 58 VNYPGGYTCYCDGKKGFKLAQDQKSCE 84
Score = 38.0 bits (89), Expect = 0.001
Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 175 DHDHC--NPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNP 232
D D C P+ C C N D+ C C E + RY + C+DIDEC N
Sbjct: 2 DVDECSLKPSICGTAV-CKNIPGDFECECPEGY--------RYNLKSKSCEDIDECSENM 52
Query: 233 CQNGGTCVDLVDGYKCEC 250
C CV+ GY C C
Sbjct: 53 CA--QLCVNYPGGYTCYC 68
Score = 36.9 bits (86), Expect = 0.002
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWT----GHNCDVNINDCV-GQCRHGSTCI 316
D DEC P + C N+ GD+ C C G+ +C +I++C C C+
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSC-EDIDECSENMCAQ--LCV 58
Query: 317 DLVNDFHCAC--LPGYT----GRTCQTDIN 340
+ + C C G+ ++C+ ++
Sbjct: 59 NYPGGYTCYCDGKKGFKLAQDQKSCE-VVS 87
Score = 31.9 bits (73), Expect = 0.11
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 486 GSFKCSCDAGFS----GKYCHENINDCKHNPCQNGGTCVDKVNSFQCIC 530
G F+C C G+ K C E+I++C N C CV+ + C C
Sbjct: 23 GDFECECPEGYRYNLKSKSC-EDIDECSENMCA--QLCVNYPGGYTCYC 68
Score = 31.1 bits (71), Expect = 0.19
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 9 DLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFS----GINCEVVDNPCMMGPCGNGGQC 64
D++ C C+N P + C CPEG+ +CE +D C C C
Sbjct: 2 DVDECSLKPSICGTAVCKNI-PGDFECECPEGYRYNLKSKSCEDID-ECSENMC--AQLC 57
Query: 65 KETAGQFQCVC 75
G + C C
Sbjct: 58 VNYPGGYTCYC 68
Score = 28.4 bits (64), Expect = 1.7
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 564 ENINDCKHNPCQ-NGGTCVDKVNSFQCICRDGWE----GEICANNKNECEPNPCKNNGTC 618
+++++C P C + F+C C +G+ + C + +EC N C C
Sbjct: 1 KDVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSC-EDIDECSENMC--AQLC 57
Query: 619 IDGHADFTCLC 629
++ +TC C
Sbjct: 58 VNYPGGYTCYC 68
Score = 28.4 bits (64), Expect = 2.0
Identities = 21/93 (22%), Positives = 29/93 (31%), Gaps = 26/93 (27%)
Query: 109 DLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETA 168
D++ C C+N P + C CPEG+ +
Sbjct: 2 DVDECSLKPSICGTAVCKNI-PGDFECECPEGY-----------------------RYNL 37
Query: 169 GQFQCVDHDHCNPNPCLNGAPCFNTQADYYCHC 201
C D D C+ N C C N Y C+C
Sbjct: 38 KSKSCEDIDECSENMC--AQLCVNYPGGYTCYC 68
Score = 28.0 bits (63), Expect = 2.6
Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 26/92 (28%)
Query: 338 DINDCESSPCV-NGGECVDQVNGFRCICPVGFAGQLCENGGTCVNTGDLYSCICKEGFEG 396
D+++C P + C + F C CP G+ + +C
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGY--RYNLKSKSC----------------- 42
Query: 397 PDCGQDINDCSPQPCYNGGKCVDGVNWFLCEC 428
+DI++CS C CV+ + C C
Sbjct: 43 ----EDIDECSENMC--AQLCVNYPGGYTCYC 68
Score = 26.9 bits (60), Expect = 7.3
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 14/73 (19%)
Query: 638 CTSKNGHCDRGTCKHGGTCADLGSSFFCHCPP----DWEGTSCHIGKLNACKSNPCKNGG 693
C+ K C CK ++ F C CP + + SC ++ C N C
Sbjct: 6 CSLKPSICGTAVCK------NIPGDFECECPEGYRYNLKSKSCE--DIDECSENMC--AQ 55
Query: 694 TCVNTGDLYSCIC 706
CVN Y+C C
Sbjct: 56 LCVNYPGGYTCYC 68
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 44.6 bits (105), Expect = 1e-04
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 15/90 (16%)
Query: 550 KCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEP 609
+C + E C++ C G C C GWEG+ C K CEP
Sbjct: 380 ECRATVQPAQTLTSECSRLCRNGYCTPTGKCC---------CSPGWEGDFCRTAK--CEP 428
Query: 610 NPCKNNGTCIDGHADFTCLCKNGWKGKTCT 639
C++ G C+ + CLCK G+ G C
Sbjct: 429 -ACRHGGVCVRPN---KCLCKKGYLGPQCE 454
Score = 43.8 bits (103), Expect = 1e-04
Identities = 28/109 (25%), Positives = 36/109 (33%), Gaps = 21/109 (19%)
Query: 234 QNGGTCVDLVD------GYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRC 287
+ G +VD +C T + + C+ C +C
Sbjct: 361 THNGKLYKIVDPKRPLMPEECRATVQPAQTLTSECSRLCRNGYCTPTG----------KC 410
Query: 288 NCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQ 336
CSPGW G C C CRHG C V C C GY G C+
Sbjct: 411 CCSPGWEGDFCRTAK--CEPACRHGGVC---VRPNKCLCKKGYLGPQCE 454
Score = 40.7 bits (95), Expect = 0.002
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 16/68 (23%)
Query: 644 HCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGGTCVNTGDLYS 703
C G C G C C P WEG C K C+ C++GG CV
Sbjct: 398 LCRNGYCTPTGKC---------CCSPGWEGDFCRTAK---CEP-ACRHGGVCVRPN---K 441
Query: 704 CICKEGFV 711
C+CK+G++
Sbjct: 442 CLCKKGYL 449
Score = 38.4 bits (89), Expect = 0.008
Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 34/93 (36%)
Query: 58 CGNGGQCKETAGQFQCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHE 117
C NG +C C+PGW G C+
Sbjct: 399 CRNGYCTPTG----KCCCSPGWEGDFCRT--------------------------AKCEP 428
Query: 118 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVD 150
C++GG C P++ C C +G+ G CE VD
Sbjct: 429 ACRHGGVC--VRPNK--CLCKKGYLGPQCEQVD 457
Score = 37.6 bits (87), Expect = 0.013
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 377 GTCVNTGDLYSCICKEGFEGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPD 436
G C TG C C G+EG C C P C +GG CV C C G+ GP
Sbjct: 402 GYCTPTGK---CCCSPGWEGDFC--RTAKCEP-ACRHGGVCVRPNK---CLCKKGYLGPQ 452
Query: 437 C 437
C
Sbjct: 453 C 453
Score = 36.5 bits (84), Expect = 0.028
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 342 CESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVNTGDLYSCICKEGFEGPDCGQ 401
C + C G+C C C +GG CV C+CK+G+ GP C Q
Sbjct: 399 CRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPN---KCLCKKGYLGPQCEQ 455
Score = 33.8 bits (77), Expect = 0.20
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 12/64 (18%)
Query: 23 GTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGP-CGNGGQCKETAGQFQCVCAPGWTG 81
G C T C C G+ G C P C +GG C +C+C G+ G
Sbjct: 402 GYCTPTG----KCCCSPGWEGDFCRT----AKCEPACRHGGVCVRPN---KCLCKKGYLG 450
Query: 82 PTCK 85
P C+
Sbjct: 451 PQCE 454
Score = 32.6 bits (74), Expect = 0.51
Identities = 23/112 (20%), Positives = 35/112 (31%), Gaps = 38/112 (33%)
Query: 489 KCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGS 548
+C + E C++ C G C C GWEG+ C
Sbjct: 380 ECRATVQPAQTLTSECSRLCRNGYCTPTGKCC---------CSPGWEGDFCR-------- 422
Query: 549 FKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 600
C+ C++GG C V +C+C+ G+ G C
Sbjct: 423 -TAKCEP-----------------ACRHGGVC---VRPNKCLCKKGYLGPQC 453
Score = 30.7 bits (69), Expect = 1.6
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVD 50
C++GG C P++ C C +G+ G CE VD
Sbjct: 429 ACRHGGVC--VRPNK--CLCKKGYLGPQCEQVD 457
Score = 28.4 bits (63), Expect = 9.8
Identities = 18/77 (23%), Positives = 25/77 (32%), Gaps = 18/77 (23%)
Query: 199 CHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNP---------------CQNGGTCVDLV 243
C T S C N C +C +P C++GG C V
Sbjct: 381 CRATVQPAQTLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVC---V 437
Query: 244 DGYKCECTQAWEGSNCQ 260
KC C + + G C+
Sbjct: 438 RPNKCLCKKGYLGPQCE 454
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 44.3 bits (104), Expect = 1e-04
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 225 IDECVSNPCQNGGTCVDL-VDGYKCECTQ-AWEGSNCQY 261
++ C PCQ+ G CV +D Y+C+CT+ + G NC
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
Score = 38.5 bits (89), Expect = 0.007
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTC-PEGFSGINCEV 48
PCQ+ G C D+Y C C G+SG NC +
Sbjct: 9 PCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
Score = 38.5 bits (89), Expect = 0.007
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 118 PCQNGGTCENTAPDQYLCTC-PEGFSGINCEV 148
PCQ+ G C D+Y C C G+SG NC +
Sbjct: 9 PCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
Score = 36.6 bits (84), Expect = 0.034
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 681 LNACKSNPCKNGGTCVNTG-DLYSCIC 706
+N C PC++ G CV G D Y C C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDC 28
Score = 34.6 bits (79), Expect = 0.11
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 505 INDCKHNPCQNGGTCVDK-VNSFQCIC-RDGWEGEIC 539
+N C + PCQ+ G CV ++ +QC C R G+ G C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
Score = 34.6 bits (79), Expect = 0.11
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 566 INDCKHNPCQNGGTCVDK-VNSFQCIC-RDGWEGEIC 600
+N C + PCQ+ G CV ++ +QC C R G+ G C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
Score = 33.5 bits (76), Expect = 0.27
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 605 NECEPNPCKNNGTCID-GHADFTCLCKN-GWKGKTCTS 640
N C PC++ G C+ G + C C G+ G CT
Sbjct: 3 NPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
Score = 33.1 bits (75), Expect = 0.39
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 403 INDCSPQPCYNGGKCVD-GVNWFLCECAP-GFAGPDC 437
+N C PC + G CV G++ + C+C G++GP+C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
Score = 32.7 bits (74), Expect = 0.41
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 51 NPCMMGPCGNGGQCKETA-GQFQCVCAP-GWTGPTC 84
NPC PC + G C ++QC C G++GP C
Sbjct: 3 NPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
Score = 32.7 bits (74), Expect = 0.45
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 373 CENGGTCVNTG-DLYSCIC-KEGFEGPDC 399
C++ G CV G D Y C C + G+ GP+C
Sbjct: 10 CQHQGICVRFGLDRYQCDCTRTGYSGPNC 38
Score = 31.9 bits (72), Expect = 0.77
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 339 INDCESSPCVNGGECVDQ-VNGFRCIC-PVGFAGQLCE 374
+N C PC + G CV ++ ++C C G++G C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCT 39
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 44.1 bits (104), Expect = 1e-04
Identities = 11/137 (8%), Positives = 21/137 (15%), Gaps = 13/137 (9%)
Query: 573 PCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNG 632
PC + K S + N C+N +G +
Sbjct: 35 PCLAWASAQAKALSKHQDFNSA----------VQLVENFCRNPDGDEEGVWCYVAGKPGD 84
Query: 633 WKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNG 692
+ + T +D + C
Sbjct: 85 FGYCDLNYCEEAVEEETGDGLDEDSDRAIEGATATSEYQ---TFFNPATFGSGEADCGLR 141
Query: 693 GTCVNTGDLYSCICKEG 709
+
Sbjct: 142 PLFEKKSLEDKTERELL 158
Score = 43.3 bits (102), Expect = 2e-04
Identities = 18/125 (14%), Positives = 28/125 (22%), Gaps = 17/125 (13%)
Query: 567 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFT 626
N C+N + V + + N CE + G +D
Sbjct: 57 VQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDL----NYCEEAVEEETGDGLDED---- 108
Query: 627 CLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKS 686
+G T TS+ G C P +E S
Sbjct: 109 --SDRAIEGATATSEYQTFFNPATFGSG-------EADCGLRPLFEKKSLEDKTERELLE 159
Query: 687 NPCKN 691
+
Sbjct: 160 SYIDG 164
Score = 39.8 bits (93), Expect = 0.003
Identities = 17/119 (14%), Positives = 30/119 (25%), Gaps = 9/119 (7%)
Query: 219 NPPCDDIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGC 278
+ + + V N C+N + V Y + + Y C+++ G
Sbjct: 50 HQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNY----CEEAVEEETGDGL 105
Query: 279 TNLVGDYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQT 337
G T + + + C L F L T R
Sbjct: 106 DE----DSDRAIEGATATSEYQTFFNPATFGSGEADC-GLRPLFEKKSLEDKTERELLE 159
Score = 39.5 bits (92), Expect = 0.003
Identities = 18/125 (14%), Positives = 30/125 (24%), Gaps = 5/125 (4%)
Query: 172 QCVDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSN 231
N C N Y D+ + ++ + D +DE S+
Sbjct: 52 DFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDED-SD 110
Query: 232 PCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYR----C 287
G T + T ++C +KS D R
Sbjct: 111 RAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGS 170
Query: 288 NCSPG 292
+ G
Sbjct: 171 DAEIG 175
Score = 38.7 bits (90), Expect = 0.006
Identities = 17/142 (11%), Positives = 26/142 (18%), Gaps = 20/142 (14%)
Query: 308 QCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVG 367
C ++ H + C N + V + P
Sbjct: 35 PCLAWASAQAKALSKHQDFNSA----------VQLVENFCRNPDGDEEGVWCYVAGKPGD 84
Query: 368 FAGQLCEN--GGTCVNTGDLYSCICKEGFEGPDCGQDINDCSPQPCYNGGK--------C 417
F TGD EG + + G+
Sbjct: 85 FGYCDLNYCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPLF 144
Query: 418 VDGVNWFLCECAPGFAGPDCRI 439
E + D RI
Sbjct: 145 EKKSLEDKTERELLESYIDGRI 166
Score = 36.8 bits (85), Expect = 0.024
Identities = 9/110 (8%), Positives = 19/110 (17%), Gaps = 2/110 (1%)
Query: 506 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHEN 565
N C+N + V + + N + + E
Sbjct: 57 VQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDL-NYCEEAVEEETGDGLDEDSDRAIEG 115
Query: 566 INDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNN 615
C R +E + + +
Sbjct: 116 ATATSEYQTFFNPATFGSGE-ADCGLRPLFEKKSLEDKTERELLESYIDG 164
Score = 35.2 bits (81), Expect = 0.073
Identities = 21/145 (14%), Positives = 31/145 (21%), Gaps = 14/145 (9%)
Query: 110 LNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCEVVD-NPCMMGPCGNGGQCKETA 168
Y G +G C A + + + + C N +E
Sbjct: 21 QQYQGRLAVTTHGLPCLAWA------SAQAKALSKHQDFNSAVQLVENFCRNPDGDEEGV 74
Query: 169 G---QFQCVDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDI 225
+ D +C+ N C A T EG + NP
Sbjct: 75 WCYVAGKPGDFGYCDLNYC-EEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFG- 132
Query: 226 DECVSNPCQNGGTCVDLVDGYKCEC 250
C K E
Sbjct: 133 --SGEADCGLRPLFEKKSLEDKTER 155
Score = 34.1 bits (78), Expect = 0.16
Identities = 13/121 (10%), Positives = 26/121 (21%), Gaps = 20/121 (16%)
Query: 232 PCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNCSP 291
PC + + A + ++ C N G V Y
Sbjct: 35 PCLAWASAQAKALSKHQDFN----------SAVQLVENFCRNPD-GDEEGVWCYVAGKPG 83
Query: 292 GWTGHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGG 351
+ + + + G + G T ++ + G
Sbjct: 84 DFGYCDLNYCEEAVEEETGDGLD--------EDSD-RAIEGATATSEYQTFFNPATFGSG 134
Query: 352 E 352
E
Sbjct: 135 E 135
Score = 31.0 bits (70), Expect = 1.3
Identities = 13/82 (15%), Positives = 16/82 (19%), Gaps = 8/82 (9%)
Query: 637 TCTSKNGHCDRGTC---KHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGG 693
C G +G HG C S N C+N
Sbjct: 14 QCVPDRGQQYQGRLAVTTHGLPCLAWAS-----AQAKALSKHQDFNSAVQLVENFCRNPD 68
Query: 694 TCVNTGDLYSCICKEGFVHALL 715
Y F + L
Sbjct: 69 GDEEGVWCYVAGKPGDFGYCDL 90
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 44.0 bits (103), Expect = 1e-04
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 226 DECVSNPCQNGGTCVDL-VDGYKCECTQ-AWEGSNCQY 261
+ C SNPCQN G C+ D YKC+CT+ + G NC
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 38.9 bits (90), Expect = 0.005
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTC-PEGFSGINCEV 48
PCQN G C +T DQY C C GF G NC
Sbjct: 8 PCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 38.9 bits (90), Expect = 0.005
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 118 PCQNGGTCENTAPDQYLCTC-PEGFSGINCEV 148
PCQN G C +T DQY C C GF G NC
Sbjct: 8 PCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 36.6 bits (84), Expect = 0.028
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 682 NACKSNPCKNGGTCVNTG-DLYSCIC 706
N C SNPC+N G C++TG D Y C C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDC 27
Score = 35.5 bits (81), Expect = 0.060
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 506 NDCKHNPCQNGGTCVDK-VNSFQCIC-RDGWEGEIC 539
N C NPCQN G C+ + ++C C R G+ GE C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 35.5 bits (81), Expect = 0.060
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 567 NDCKHNPCQNGGTCVDK-VNSFQCIC-RDGWEGEIC 600
N C NPCQN G C+ + ++C C R G+ GE C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 33.9 bits (77), Expect = 0.19
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 605 NECEPNPCKNNGTCID-GHADFTCLC-KNGWKGKTCTS 640
N C NPC+N G C+ G + C C + G+ G+ CT+
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 33.6 bits (76), Expect = 0.28
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 404 NDCSPQPCYNGGKCVD-GVNWFLCECAP-GFAGPDC 437
N C PC N G+C+ G + + C+C GF G +C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 33.2 bits (75), Expect = 0.34
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 373 CENGGTCVNTG-DLYSCIC-KEGFEGPDC 399
C+N G C++TG D Y C C + GF G +C
Sbjct: 9 CQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 33.2 bits (75), Expect = 0.36
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 51 NPCMMGPCGNGGQCKETAG-QFQCVCAP-GWTGPTC 84
NPC PC N G+C T Q++C C G+ G C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
Score = 32.8 bits (74), Expect = 0.41
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 340 NDCESSPCVNGGECVDQ-VNGFRCIC-PVGFAGQLCE 374
N C S+PC N GEC+ + ++C C GF G+ C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 38
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 43.9 bits (103), Expect = 2e-04
Identities = 53/288 (18%), Positives = 81/288 (28%), Gaps = 40/288 (13%)
Query: 376 GGTCVNTGDLYSCICKEGFEGPDCGQDINDCSPQPCYNG---GKCVDGVNWFLCECAPGF 432
G C G C +G G C + G C+D + A G
Sbjct: 251 RGNCFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGR 310
Query: 433 AGPDCRININECASNPCGYGKEILTVQSRSRSPAYLCVSNPAYLVARCVSQSGGSFKCSC 492
C+ S+ C + + + + + S + C F+
Sbjct: 311 NSNACKKCNCNEHSSSCHFDMA-VFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPE 369
Query: 493 DAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSF------QCICRDGWEGEICANSNQSG 546
C C +NGG C + QC C+ EGE C
Sbjct: 370 RDIRDPNLCEPC--TCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERC------- 420
Query: 547 GSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDK----VNSFQCICRDGWEGEIC-- 600
C GF E+ CK C GT + C C+ G+ C
Sbjct: 421 ----DVCKEGFYD-LSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQ 475
Query: 601 --------ANNKNECEPNPCKNNGTCIDGHADFT--CLCKNGWKGKTC 638
+N+ + C P C G + ++ + C C G+ C
Sbjct: 476 CLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQC 523
Score = 43.5 bits (102), Expect = 2e-04
Identities = 49/264 (18%), Positives = 67/264 (25%), Gaps = 25/264 (9%)
Query: 57 PCGNGGQCKETAGQFQCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTH 116
P + E C+C G C++ +F+ L + P N
Sbjct: 265 PVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHS 324
Query: 117 EPCQNGGTCENTAPDQYL---CTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQC 173
C + C G NCE P + C
Sbjct: 325 SSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCK-PFYFQHPERDIRDPNLCEPCTC 383
Query: 174 VDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPC 233
N C C C EG+ C + + +D C S C
Sbjct: 384 DPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCAC 443
Query: 234 QNGGTCV-----DLVDGYKCECTQAWEGSNCQY----------DADECQKSPCVNAALGC 278
GT D G C C + G C D D C+ PC G
Sbjct: 444 NPLGTIPGGNPCDSETG-YCYCKRLVTGQRCDQCLPQHWGLSNDLDGCR--PCDCDLGGA 500
Query: 279 TNLVGDY---RCNCSPGWTGHNCD 299
N +C+C P G C+
Sbjct: 501 LNNSCSEDSGQCSCLPHMIGRQCN 524
Score = 37.4 bits (86), Expect = 0.016
Identities = 52/321 (16%), Positives = 80/321 (24%), Gaps = 64/321 (19%)
Query: 119 CQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVDHDH 178
+G E C C G+NCE+ + + + + +
Sbjct: 265 PVDGVNEEVEGMVHGHCMCRHNTKGLNCELCM------DFYHDLPWR----PAEGRNSNA 314
Query: 179 CNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQNGGT 238
C C + + + T + G C ++ C+ P
Sbjct: 315 CKKCNCNEHSSSCHFDMAVFL-ATGNVSGGVCDNCQHNTMGRNCEQCK-----PFYFQHP 368
Query: 239 CVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNC 298
D+ D CE C D + + + + +C C G C
Sbjct: 369 ERDIRDPNLCE--------PCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERC 420
Query: 299 DVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVN 358
D C + D G C +PC D
Sbjct: 421 D--------------VCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPC-------DSET 459
Query: 359 GFRCICPVGFAGQLCENGGTCVNTGDLYSCICKEGFEGPDCGQDINDCSPQPCYNGGKCV 418
G C C GQ C+ C G D++ C P C GG
Sbjct: 460 G-YCYCKRLVTGQRCDQ--------------CLPQHWGLSN--DLDGCRPCDCDLGGALN 502
Query: 419 DGVNWF--LCECAPGFAGPDC 437
+ + C C P G C
Sbjct: 503 NSCSEDSGQCSCLPHMIGRQC 523
Score = 37.0 bits (85), Expect = 0.019
Identities = 45/289 (15%), Positives = 77/289 (26%), Gaps = 42/289 (14%)
Query: 335 CQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVNTGDLYSCICKEGF 394
C + E +P E V+ + C+C G CE + +
Sbjct: 254 CFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSN 313
Query: 395 EGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCE-CAPGFAGPDCRININECASNPCGYGK 453
C + + S V+ +C+ C G +C P +
Sbjct: 314 ACKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNC------EQCKPFYFQH 367
Query: 454 EILTVQSRSRSPAYLCVSNPAYLVARCVSQSGG-----SFKCSCDAGFSGKYCH------ 502
++ + C + C + + +C C G+ C
Sbjct: 368 PERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGF 427
Query: 503 -----ENINDCKHNPCQNGGTCVDK----VNSFQCICRDGWEGEICANSNQSGGSFKCSC 553
E+ CK C GT + C C+ G+ C C
Sbjct: 428 YDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCD-----------QC 476
Query: 554 DAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSF--QCICRDGWEGEIC 600
G +++ C+ C GG + + QC C G C
Sbjct: 477 LPQHWGLSN--DLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQC 523
Score = 36.2 bits (83), Expect = 0.043
Identities = 39/232 (16%), Positives = 59/232 (25%), Gaps = 39/232 (16%)
Query: 501 CHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGK 560
C + + P V+ + C+CR +G C C +
Sbjct: 254 CFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNC-----------ELCMDFYHDL 302
Query: 561 YCH----ENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCK--- 613
N N CK C + + + G +C N ++ C+
Sbjct: 303 PWRPAEGRNSNACKKCNCNEHSSS-CHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCK 361
Query: 614 -NNGTCIDGHADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWE 672
+ LC+ + G CD + + C C E
Sbjct: 362 PFYFQHPERDIRDPNLCEPCTCDPAGSENGGICD---GYTDFSVGLIAGQ--CRCKLHVE 416
Query: 673 GTSCHIGK----------LNACKSNPCKNGGTCVNTGDLYS----CICKEGF 710
G C + K CKS C GT S C CK
Sbjct: 417 GERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLV 468
Score = 35.4 bits (81), Expect = 0.058
Identities = 51/341 (14%), Positives = 72/341 (21%), Gaps = 90/341 (26%)
Query: 177 DHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCS-----FPRYKCDNPPCDDIDECVSN 231
C P +N C C + +G NC + + + C
Sbjct: 261 SECAPVDGVNEEVEGMVHGH--CMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKC 318
Query: 232 PCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNCSP 291
C + D T G C C ++
Sbjct: 319 NCNEHSSS-CHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCK------PFYFQHPERD 371
Query: 292 GWTGH-----NCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSP 346
+ CD ++ G C + + C C G C
Sbjct: 372 IRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERC----------- 420
Query: 347 CVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVNTGDLYS----CICKEGFEGPDCGQD 402
C + P G C GT S C CK G C Q
Sbjct: 421 ----DVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQ- 475
Query: 403 INDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININECASNPCGYGKEILTVQSRS 462
C P G +++ C C
Sbjct: 476 -------------------------CLPQHWGLSN--DLDGCRPCDC------------- 495
Query: 463 RSPAYLCVSNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHE 503
L C SG +CSC G+ C+E
Sbjct: 496 --------DLGGALNNSCSEDSG---QCSCLPHMIGRQCNE 525
Score = 35.1 bits (80), Expect = 0.086
Identities = 43/236 (18%), Positives = 61/236 (25%), Gaps = 52/236 (22%)
Query: 492 CDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKC 551
C+ CH ++ +GG C + C+ G C F+
Sbjct: 318 CNCNEHSSSCHFDMAVFLATGNVSGGVCDN--------CQHNTMGRNCEQCKP--FYFQH 367
Query: 552 SCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSF------QCICRDGWEGEICANNKN 605
C C +NGG C + QC C+ EGE C
Sbjct: 368 PERDIRDPNLCEPC--TCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERC----- 420
Query: 606 ECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFC 665
C +G D + G K C C + +C
Sbjct: 421 ----------DVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDS--------ETGYC 462
Query: 666 HCPPDWEGTSCH---------IGKLNACKSNPCKNGGTCVNTGDLYS--CICKEGF 710
+C G C L+ C+ C GG N+ S C C
Sbjct: 463 YCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHM 518
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 41.7 bits (98), Expect = 2e-04
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 228 CVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQK 268
C C G C++ + Y C C + G C+Y D+ K
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDDDK 162
Score = 39.4 bits (92), Expect = 0.001
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 406 CSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININEC 444
C C G+C++ + + C C PGF GP+C ++
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDD 160
Score = 36.3 bits (84), Expect = 0.010
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 52 PCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTC 84
C C G+C ET G + C C PG+ GP C
Sbjct: 121 SCQDMSCSKQGECLETIGNYTCSCYPGFYGPEC 153
Score = 35.5 bits (82), Expect = 0.021
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 373 CENGGTCVNTGDLYSCICKEGFEGPDCGQDINDC 406
C G C+ T Y+C C GF GP+C +D
Sbjct: 127 CSKQGECLETIGNYTCSCYPGFYGPECEYVRDDD 160
Score = 35.2 bits (81), Expect = 0.026
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 569 CKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECE 608
C+ C G C++ + ++ C C G+ G C +++ +
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDDD 161
Score = 34.8 bits (80), Expect = 0.046
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 309 CRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCE 343
C C++ + ++ C+C PG+ G C+ +D +
Sbjct: 127 CSKQGECLETIGNYTCSCYPGFYGPECEYVRDDDD 161
Score = 33.2 bits (76), Expect = 0.14
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 599 ICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCTSKNGHCDR 647
+C C+ C G C++ ++TC C G+ G C D+
Sbjct: 116 LCYTAS--CQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDDDK 162
Score = 32.8 bits (75), Expect = 0.16
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPC 53
C G C T Y C+C GF G CE V +
Sbjct: 126 SCSKQGECLET-IGNYTCSCYPGFYGPECEYVRDDD 160
Score = 32.8 bits (75), Expect = 0.16
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 118 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPC 153
C G C T Y C+C GF G CE V +
Sbjct: 126 SCSKQGECLET-IGNYTCSCYPGFYGPECEYVRDDD 160
Score = 32.1 bits (73), Expect = 0.33
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 508 CKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 539
C+ C G C++ + ++ C C G+ G C
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGPEC 153
Score = 31.3 bits (71), Expect = 0.57
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 266 CQKSPCVNAAL----GCTNLVGDYRCNCSPGWTGHNCDVNINDC 305
C + C + + C +G+Y C+C PG+ G C+ +D
Sbjct: 117 CYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDD 160
Score = 31.3 bits (71), Expect = 0.65
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 624 DFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSC 676
D CL K C C +C G C + ++ C C P + G C
Sbjct: 106 DEHCLKKKHA---LC--YTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPEC 153
Score = 30.5 bits (69), Expect = 1.0
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 680 KLNACKSNPCKNGGTCVNTGDLYSCICKEGF 710
+C+ C G C+ T Y+C C GF
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGF 148
Score = 29.4 bits (66), Expect = 2.5
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 179 CNPNPCLNGAPCFNTQADYYCHCTEDWEGKNC 210
C C C T +Y C C + G C
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGPEC 153
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 41.3 bits (97), Expect = 2e-04
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 304 DCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCI 363
DCV + + ND C+ C T C ++ C GECV+ +N + C
Sbjct: 89 DCVEIYIKREKDVGMWNDERCSKKKLAL---CYTAA--CTNTSCSGHGECVETINNYTCK 143
Query: 364 CPVGFAGQLCEN 375
C GF+G CE
Sbjct: 144 CDPGFSGLKCEQ 155
Score = 38.6 bits (90), Expect = 0.002
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 406 CSPQPCYNGGKCVDGVNWFLCECAPGFAGPDC 437
C+ C G+CV+ +N + C+C PGF+G C
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKC 153
Score = 36.3 bits (84), Expect = 0.012
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 52 PCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCK 85
C C G+C ET + C C PG++G C+
Sbjct: 121 ACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 34.4 bits (79), Expect = 0.048
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 373 CENGGTCVNTGDLYSCICKEGFEGPDCGQDI 403
C G CV T + Y+C C GF G C Q +
Sbjct: 127 CSGHGECVETINNYTCKCDPGFSGLKCEQIV 157
Score = 34.0 bits (78), Expect = 0.064
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 225 IDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQY 261
C + C G CV+ ++ Y C+C + G C+
Sbjct: 119 TAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ 155
Score = 32.8 bits (75), Expect = 0.19
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 508 CKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 539
C + C G CV+ +N++ C C G+ G C
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKC 153
Score = 32.8 bits (75), Expect = 0.19
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 569 CKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 600
C + C G CV+ +N++ C C G+ G C
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKC 153
Score = 32.8 bits (75), Expect = 0.19
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 599 ICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTC 638
+C C C +G C++ ++TC C G+ G C
Sbjct: 116 LCY--TAACTNTSCSGHGECVETINNYTCKCDPGFSGLKC 153
Score = 32.8 bits (75), Expect = 0.19
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 680 KLNACKSNPCKNGGTCVNTGDLYSCICKEGF 710
AC + C G CV T + Y+C C GF
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGF 148
Score = 31.7 bits (72), Expect = 0.38
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 304 DCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDI 339
C C++ +N++ C C PG++G C+ +
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIV 157
Score = 31.7 bits (72), Expect = 0.45
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVV 49
C G C T + Y C C GFSG+ CE +
Sbjct: 126 SCSGHGECVET-INNYTCKCDPGFSGLKCEQI 156
Score = 31.7 bits (72), Expect = 0.45
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 118 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVV 149
C G C T + Y C C GFSG+ CE +
Sbjct: 126 SCSGHGECVET-INNYTCKCDPGFSGLKCEQI 156
Score = 30.9 bits (70), Expect = 0.67
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 259 CQYDADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCD 299
C A C + C C + +Y C C PG++G C+
Sbjct: 117 CYTAA--CTNTSCSGHG-ECVETINNYTCKCDPGFSGLKCE 154
Score = 30.5 bits (69), Expect = 0.95
Identities = 9/34 (26%), Positives = 11/34 (32%)
Query: 177 DHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNC 210
C C C T +Y C C + G C
Sbjct: 120 AACTNTSCSGHGECVETINNYTCKCDPGFSGLKC 153
Score = 30.5 bits (69), Expect = 1.1
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 624 DFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSC 676
D C K C C +C G C + +++ C C P + G C
Sbjct: 106 DERCSKKKLA---LC--YTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKC 153
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 42.9 bits (100), Expect = 3e-04
Identities = 25/165 (15%), Positives = 44/165 (26%), Gaps = 10/165 (6%)
Query: 177 DHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQNG 236
+ C N C + + Y C C + ++ C+DIDEC +P
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQL---------VAQRRCEDIDEC-QDPDTCS 50
Query: 237 GTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGH 296
CV+L GYKC+C + ++ + + +
Sbjct: 51 QLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPN 110
Query: 297 NCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDIND 341
+V D L G + +
Sbjct: 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 155
Score = 42.9 bits (100), Expect = 3e-04
Identities = 27/129 (20%), Positives = 40/129 (31%), Gaps = 8/129 (6%)
Query: 226 DECVSNPCQNGGTCVDLVDGYKCECTQAWE--GSNCQYDADECQKSPCVNAALGCTNLVG 283
+EC+ N C DL GY+C C ++ D DECQ + C NL G
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQL--CVNLEG 58
Query: 284 DYRCNCSPGWT----GHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDI 339
Y+C C G+ C + + + D R
Sbjct: 59 GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALD 118
Query: 340 NDCESSPCV 348
+ S+
Sbjct: 119 TEVASNRIY 127
Score = 40.2 bits (93), Expect = 0.002
Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 7/107 (6%)
Query: 605 NECEPNPCKNNGTCIDGHADFTCLCKNGWK---GKTCTSKNGHCDRGTCKHGGTCADLGS 661
NEC N + C D + CLC +G++ + C + D TC C +L
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ--LCVNLEG 58
Query: 662 SFFCHCPPDWE--GTSCHIGKLNACKSNPCKNGGTCVNTGDLYSCIC 706
+ C C ++ + + + N S
Sbjct: 59 GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYT 105
Score = 33.7 bits (76), Expect = 0.24
Identities = 25/170 (14%), Positives = 47/170 (27%), Gaps = 23/170 (13%)
Query: 506 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHEN 565
N+C N C D ++C+C DG++ + E+
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQ---------------------LVAQRRCED 39
Query: 566 INDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADF 625
I++C +P CV+ ++C C +G++ + + + T
Sbjct: 40 IDEC-QDPDTCSQLCVNLEGGYKCQCEEGFQLD-PHTKACKAVGSIAYLFFTNRHEVRKM 97
Query: 626 TCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTS 675
T D + +DL C D
Sbjct: 98 TLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV 147
Score = 33.7 bits (76), Expect = 0.24
Identities = 21/151 (13%), Positives = 45/151 (29%), Gaps = 8/151 (5%)
Query: 469 CVSNPAYLVARCVSQSGGSFKCSCDAGF--SGKYCHENINDCKHNPCQNGGTCVDKVNSF 526
C+ N C ++C C GF + E+I++C +P CV+ +
Sbjct: 3 CLDNNGGCSHVCN-DLKIGYECLCPDGFQLVAQRRCEDIDEC-QDPDTCSQLCVNLEGGY 60
Query: 527 QCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNS 586
+C C +G++ + + S F + + + V +
Sbjct: 61 KCQCEEGFQL----DPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVA 116
Query: 587 FQCICRDGWEGEICANNKNECEPNPCKNNGT 617
+ + C + +G
Sbjct: 117 LDTEVASNRIYWSDLSQRMICSTQLDRAHGV 147
Score = 33.3 bits (75), Expect = 0.26
Identities = 22/163 (13%), Positives = 39/163 (23%), Gaps = 26/163 (15%)
Query: 51 NPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDL 110
N C+ G C + ++C+C G+ R D+
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVA--------------------QRRCEDI 40
Query: 111 NYCGTHEPCQNGGTCENTAPDQYLCTCPEGF---SGINCEVVDNPCMMGPCGNGGQCKET 167
+ C + C C N Y C C EGF N + ++
Sbjct: 41 DECQDPDTCS--QLCVNL-EGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKM 97
Query: 168 AGQFQCVDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNC 210
N + + Y+ ++
Sbjct: 98 TLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQ 140
Score = 32.5 bits (73), Expect = 0.52
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 638 CTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGGTCVN 697
C NG C C DL + C CP ++ + + +P CVN
Sbjct: 3 CLDNNGGCSH-------VCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVN 55
Query: 698 TGDLYSCICKEGFV 711
Y C C+EGF
Sbjct: 56 LEGGYKCQCEEGFQ 69
Score = 32.1 bits (72), Expect = 0.73
Identities = 18/129 (13%), Positives = 35/129 (27%), Gaps = 5/129 (3%)
Query: 264 DECQKSPCVNAALGCTNLVGDYRCNCSPGWT--GHNCDVNINDCVGQCRHGSTCIDLVND 321
+EC + + + C +L Y C C G+ +I++C C++L
Sbjct: 1 NECLDNNGGCSHV-CNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGG 59
Query: 322 FHCACLPGYT--GRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTC 379
+ C C G+ T + V ++ R
Sbjct: 60 YKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDT 119
Query: 380 VNTGDLYSC 388
+
Sbjct: 120 EVASNRIYW 128
Score = 29.0 bits (64), Expect = 5.2
Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 13/96 (13%)
Query: 340 NDCESSPCVNGGECVDQVNGFRCICPVGFAGQL---------CENGGT----CVNTGDLY 386
N+C + C D G+ C+CP GF C++ T CVN Y
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGY 60
Query: 387 SCICKEGFEGPDCGQDINDCSPQPCYNGGKCVDGVN 422
C C+EGF+ + +
Sbjct: 61 KCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRK 96
Score = 28.3 bits (62), Expect = 9.7
Identities = 17/116 (14%), Positives = 29/116 (25%), Gaps = 4/116 (3%)
Query: 24 TCENTAPDQYLCTCPEGFSGIN--CEVVDNPCMMGPCGNGGQCKETAGQFQCVCAPGWTG 81
C + Y C CP+GF + + C P C G ++C C G+
Sbjct: 13 VCNDL-KIGYECLCPDGFQLVAQRRCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQL 70
Query: 82 PTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGTCENTAPDQYLCTC 137
+ ++ T L+ N +
Sbjct: 71 DPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRI 126
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 42.8 bits (100), Expect = 3e-04
Identities = 21/146 (14%), Positives = 38/146 (26%), Gaps = 10/146 (6%)
Query: 566 INDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTC----IDG 621
+C N C + QC C G+ + + + + N C G C +
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYR--LTEDGRTCQDVNECAEEGYCSQGCTNS 60
Query: 622 HADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKL 681
F C C+ G++ + + + P E T
Sbjct: 61 EGAFQCWCEAGYELRP----DRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLE 116
Query: 682 NACKSNPCKNGGTCVNTGDLYSCICK 707
NA + + I +
Sbjct: 117 NAIALDFHHRRELVFWSDVTLDRILR 142
Score = 41.3 bits (96), Expect = 0.001
Identities = 22/138 (15%), Positives = 36/138 (26%), Gaps = 16/138 (11%)
Query: 175 DHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNP-C 233
++CN N C + C C + R D C D++EC C
Sbjct: 2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGY--------RLTEDGRTCQDVNECAEEGYC 53
Query: 234 QNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNCSPGW 293
G C + ++C C + D + D R
Sbjct: 54 SQG--CTNSEGAFQCWCEA-----GYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRS 106
Query: 294 TGHNCDVNINDCVGQCRH 311
N+ + + H
Sbjct: 107 EYTLLLNNLENAIALDFH 124
Score = 39.8 bits (92), Expect = 0.002
Identities = 19/140 (13%), Positives = 31/140 (22%), Gaps = 7/140 (5%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQK-SPCVNAAL---GCT 279
+ C N C + +C C G D CQ + C GCT
Sbjct: 2 GEENCNVNNGGCAQKCQMIRGAVQCTC---HTGYRLTEDGRTCQDVNECAEEGYCSQGCT 58
Query: 280 NLVGDYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDI 339
N G ++C C G+ + + + +
Sbjct: 59 NSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENA 118
Query: 340 NDCESSPCVNGGECVDQVNG 359
+ D
Sbjct: 119 IALDFHHRRELVFWSDVTLD 138
Score = 39.8 bits (92), Expect = 0.003
Identities = 18/129 (13%), Positives = 32/129 (24%), Gaps = 14/129 (10%)
Query: 337 TDINDCESSPCVNGGECVDQVNGFRCICPVGF----------AGQLCENGGTC----VNT 382
T +C + +C +C C G+ C G C N+
Sbjct: 1 TGEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNS 60
Query: 383 GDLYSCICKEGFEGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININ 442
+ C C+ G+E + P+P +D + I
Sbjct: 61 EGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIA 120
Query: 443 ECASNPCGY 451
+
Sbjct: 121 LDFHHRREL 129
Score = 39.0 bits (90), Expect = 0.005
Identities = 21/152 (13%), Positives = 40/152 (26%), Gaps = 23/152 (15%)
Query: 505 INDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHE 564
+C N C + QC C G ++ + D G+ C +
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTG---------------YRLTED----GRTCQD 43
Query: 565 NINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHAD 624
+ C G C + +FQC C G+E + ++ P
Sbjct: 44 VNECAEEGYCSQG--CTNSEGAFQCWCEAGYELR--PDRRSCKALGPEPVLLFANRIDIR 99
Query: 625 FTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTC 656
++ + +N +
Sbjct: 100 QVLPHRSEYTLLLNNLENAIALDFHHRRELVF 131
Score = 39.0 bits (90), Expect = 0.005
Identities = 23/178 (12%), Positives = 38/178 (21%), Gaps = 31/178 (17%)
Query: 51 NPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDL 110
C + G +C+ G QC C G +RL D
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTG-------------------------YRLTEDG 38
Query: 111 NYCGTHEPCQNGGTCENT---APDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKET 167
C C G C + + C C G+ P +
Sbjct: 39 RTCQDVNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRID- 97
Query: 168 AGQFQCVDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDI 225
Q + H N + + R + +++
Sbjct: 98 --IRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 153
Score = 36.7 bits (84), Expect = 0.021
Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 6/107 (5%)
Query: 262 DADECQKSPCVNAALGCTNLVGDYRCNCSPGWT----GHNCDVNINDCVGQCRHGSTCID 317
+ C + A C + G +C C G+ G C ++N+C + C +
Sbjct: 2 GEENCNVNNGGCAQK-CQMIRGAVQCTCHTGYRLTEDGRTCQ-DVNECAEEGYCSQGCTN 59
Query: 318 LVNDFHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCIC 364
F C C GY R + P + +D
Sbjct: 60 SEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRS 106
Score = 31.3 bits (70), Expect = 1.3
Identities = 27/176 (15%), Positives = 46/176 (26%), Gaps = 36/176 (20%)
Query: 402 DINDCSPQPCYNGGKCVDGVNWFLCECAPGFA----GPDCRININECASNP-CGYGKEIL 456
+C+ KC C C G+ G C+ ++NECA C
Sbjct: 2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQ-DVNECAEEGYCSQ----- 55
Query: 457 TVQSRSRSPAYLCVSNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNG 516
C ++ G+F+C C+AG+ + + + P
Sbjct: 56 -----------GCTNSE------------GAFQCWCEAGY--ELRPDRRSCKALGPEPVL 90
Query: 517 GTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHENINDCKHN 572
R + + N F + F + I N
Sbjct: 91 LFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLN 146
Score = 30.9 bits (69), Expect = 1.4
Identities = 19/128 (14%), Positives = 31/128 (24%), Gaps = 8/128 (6%)
Query: 8 SDLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGF----SGINCEVVDNPCMMGPCGNGGQ 63
+ C + C+ CTC G+ G C+ V+ G C
Sbjct: 1 TGEENCNVNN-GGCAQKCQMI-RGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQ--G 56
Query: 64 CKETAGQFQCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGG 123
C + G FQC C G+ + + + + N
Sbjct: 57 CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLE 116
Query: 124 TCENTAPD 131
Sbjct: 117 NAIALDFH 124
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 42.1 bits (99), Expect = 6e-04
Identities = 15/121 (12%), Positives = 27/121 (22%), Gaps = 13/121 (10%)
Query: 334 TCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGGT--CVNTGDLYSC--I 389
+ S ++G + C F G V +C +
Sbjct: 261 ESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKL 320
Query: 390 CKEGFEGPDCGQDINDCSPQPCYNGG------KCVDGVNWFLCECAPGFAGPDCRININE 443
C C + C G +G + G +G R+ +
Sbjct: 321 CT---NAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMD 377
Query: 444 C 444
Sbjct: 378 N 378
Score = 40.2 bits (94), Expect = 0.002
Identities = 12/125 (9%), Positives = 23/125 (18%), Gaps = 13/125 (10%)
Query: 569 CKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCL 628
K + +G + +S C + + +
Sbjct: 269 IKKSKALSGFSLQSCRHSIPVFCHSSFYHDTD-----FLGEELDIVAAKSHEA------- 316
Query: 629 CKNGWKGKT-CTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSN 687
C+ C + +C G L S G G
Sbjct: 317 CQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKM 376
Query: 688 PCKNG 692
+
Sbjct: 377 DNECT 381
Score = 39.1 bits (91), Expect = 0.006
Identities = 13/120 (10%), Positives = 28/120 (23%), Gaps = 8/120 (6%)
Query: 224 DIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGC-TNLV 282
+ +G + C ++ + + C
Sbjct: 265 PSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELD--IVAAKSHEACQKLCT 322
Query: 283 GDYRC--NCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDIN 340
RC C+ C + + +++ + GYT R C+ D
Sbjct: 323 NAVRCQFFTYTPAQAS-CNEGKGKCYLKLSSNGSPTKILHG--RGGISGYTLRLCKMDNE 379
Score = 35.6 bits (82), Expect = 0.070
Identities = 11/114 (9%), Positives = 21/114 (18%), Gaps = 4/114 (3%)
Query: 508 CKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC---ANSNQSGGSFKCSCDAGFSGKY-CH 563
K + +G + +S C + + + +C + C
Sbjct: 269 IKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQ 328
Query: 564 ENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGT 617
C G S G + T
Sbjct: 329 FFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTT 382
Score = 28.7 bits (64), Expect = 8.8
Identities = 26/165 (15%), Positives = 36/165 (21%), Gaps = 36/165 (21%)
Query: 12 YCGTHEPCQ------NGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCK 65
C H C E+ L T G +G +
Sbjct: 229 ICTHHPGCLFFTFFSQEWPKESQRNLCLLKTSESGLPST-------RIKKSKALSGFSLQ 281
Query: 66 ETAGQFQCVCAPGWTGPTCKIKHNFFPYLQFIPLTTSLFRLLSDLNYCGTHEPCQNGGTC 125
C + T + D+ +HE CQ C
Sbjct: 282 SCRHSIPVFCHSSFYHDTDFLGEEL------------------DIVAAKSHEACQK--LC 321
Query: 126 ENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQ 170
N Q+ P S C C + NG K G+
Sbjct: 322 TNAVRCQFFTYTPAQAS---CNEGKGKCYLKLSSNGSPTKILHGR 363
Score = 28.7 bits (64), Expect = 9.0
Identities = 4/49 (8%), Positives = 7/49 (14%)
Query: 399 CGQDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININECASN 447
G +G + C F +
Sbjct: 262 SGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVA 310
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 39.4 bits (92), Expect = 0.001
Identities = 25/88 (28%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 297 NCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQ 356
N N DCV + ND C L C T C+ C GECV+
Sbjct: 82 NNKKNKEDCVEIYIKRNKDAGKWNDDACHKLKAAL---CYTAS--CQPWSCSGHGECVEI 136
Query: 357 VNGFRCICPVGFAGQLCENGGTCVNTGD 384
+N + C C VG+ G C+ D
Sbjct: 137 INNYTCNCDVGYYGPQCQFVQVDPRLID 164
Score = 35.6 bits (82), Expect = 0.022
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 52 PCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTC 84
C C G+C E + C C G+ GP C
Sbjct: 121 SCQPWSCSGHGECVEIINNYTCNCDVGYYGPQC 153
Score = 34.8 bits (80), Expect = 0.042
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 228 CVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQY 261
C C G CV++++ Y C C + G CQ+
Sbjct: 122 CQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQF 155
Score = 34.4 bits (79), Expect = 0.060
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 406 CSPQPCYNGGKCVDGVNWFLCECAPGFAGPDC 437
C P C G+CV+ +N + C C G+ GP C
Sbjct: 122 CQPWSCSGHGECVEIINNYTCNCDVGYYGPQC 153
Score = 33.2 bits (76), Expect = 0.15
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 508 CKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 539
C+ C G CV+ +N++ C C G+ G C
Sbjct: 122 CQPWSCSGHGECVEIINNYTCNCDVGYYGPQC 153
Score = 33.2 bits (76), Expect = 0.15
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 569 CKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 600
C+ C G CV+ +N++ C C G+ G C
Sbjct: 122 CQPWSCSGHGECVEIINNYTCNCDVGYYGPQC 153
Score = 32.9 bits (75), Expect = 0.19
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 373 CENGGTCVNTGDLYSCICKEGFEGPDC 399
C G CV + Y+C C G+ GP C
Sbjct: 127 CSGHGECVEIINNYTCNCDVGYYGPQC 153
Score = 32.5 bits (74), Expect = 0.21
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 624 DFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSC 676
D C C C +C G C ++ +++ C+C + G C
Sbjct: 106 DDACHKLKAA---LC--YTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQC 153
Score = 32.1 bits (73), Expect = 0.37
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 604 KNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTC 638
C+P C +G C++ ++TC C G+ G C
Sbjct: 119 TASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQC 153
Score = 30.9 bits (70), Expect = 0.69
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVD 50
C G C + Y C C G+ G C+ V
Sbjct: 126 SCSGHGECVEII-NNYTCNCDVGYYGPQCQFVQ 157
Score = 30.9 bits (70), Expect = 0.69
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 118 PCQNGGTCENTAPDQYLCTCPEGFSGINCEVVD 150
C G C + Y C C G+ G C+ V
Sbjct: 126 SCSGHGECVEII-NNYTCNCDVGYYGPQCQFVQ 157
Score = 30.5 bits (69), Expect = 1.0
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 680 KLNACKSNPCKNGGTCVNTGDLYSCICKEGF 710
+C+ C G CV + Y+C C G+
Sbjct: 118 YTASCQPWSCSGHGECVEIINNYTCNCDVGY 148
Score = 30.2 bits (68), Expect = 1.5
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 177 DHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSF 212
C P C C +Y C+C + G C F
Sbjct: 120 ASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQF 155
Score = 30.2 bits (68), Expect = 1.5
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 266 CQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNC 298
CQ C C ++ +Y CNC G+ G C
Sbjct: 122 CQPWSCSGHG-ECVEIINNYTCNCDVGYYGPQC 153
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 40.8 bits (94), Expect = 0.002
Identities = 35/269 (13%), Positives = 59/269 (21%), Gaps = 24/269 (8%)
Query: 404 NDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININECASNPCGYGKEILTVQSRSR 463
N + +D W L PG + + + +
Sbjct: 372 NISGNTVLEDDFSTLDSRKWLL---HPGGTKMPVCGSTGDALVFIEKASTRYVVTTDIAV 428
Query: 464 SPAYLCVSNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKV 523
+ + A + S + S D G S + P +
Sbjct: 429 NEDSFLQIDFAASCSVTDSCYAIELEYSVDLGLS-----WHPLVRDCLPTNVECSRYHLQ 483
Query: 524 NSFQCICRDGWEG---EICANSNQSGGSFK----CSCDAGFSGKYCHENINDCKHNPCQN 576
+ W + + + F+ D + + I D + C
Sbjct: 484 RILVSDTFNKWTRITLPLPSYTRSQATRFRWHQPAPFDKQQTWAIDNVYIGDGCLDMCSG 543
Query: 577 GGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGK 636
G CV C+C + W G C + N G
Sbjct: 544 HGRCVQG----SCVCDEQWGGLYCDEPETSLPTQLKDNFNRAPSNQ--NWLTVSGGKLST 597
Query: 637 TCT---SKNGHCDRGTCKHGGTCADLGSS 662
C S G C DL +
Sbjct: 598 VCGAVASGLALHFSGGCSRLLVTVDLNLT 626
Score = 37.3 bits (85), Expect = 0.017
Identities = 32/240 (13%), Positives = 52/240 (21%), Gaps = 47/240 (19%)
Query: 218 DNPPCDDIDECVSNPCQNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALG 277
+ + C +C + Y + +W N
Sbjct: 427 AVNEDSFLQIDFAASCSVTDSCYAIELEYSVDLGLSWHPLVRD--------CLPTNVECS 478
Query: 278 CTNLVGDYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQT 337
+L + WT + R +T +
Sbjct: 479 RYHLQRILVSDTFNKWTRITLPLP-----SYTRSQATRFRWHQPAPFDKQQTWAIDNVYI 533
Query: 338 DINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVNTGDLYSCICKEGFEGP 397
G C+D C G CV SC+C E + G
Sbjct: 534 ------------GDGCLDM----------------CSGHGRCVQG----SCVCDEQWGGL 561
Query: 398 DCGQDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININECASNPCGYGKEILT 457
C + Q N + NW + G C + A + G +L
Sbjct: 562 YCDEPETSLPTQLKDNFNRAPSNQNW--LTVSGGKLSTVCGAVASGLALHFSGGCSRLLV 619
Score = 30.4 bits (67), Expect = 2.9
Identities = 21/160 (13%), Positives = 33/160 (20%), Gaps = 17/160 (10%)
Query: 540 ANSNQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEI 599
+ + S D G S + P + + W
Sbjct: 444 VTDSCYAIELEYSVDLGLS-----WHPLVRDCLPTNVECSRYHLQRILVSDTFNKW---- 494
Query: 600 CANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADL 659
P+ ++ T H + W +G C C G C
Sbjct: 495 --TRITLPLPSYTRSQATRFRWHQPAPFDKQQTWAIDNVYIGDG-CL-DMCSGHGRC--- 547
Query: 660 GSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGGTCVNTG 699
C C W G C + + N
Sbjct: 548 -VQGSCVCDEQWGGLYCDEPETSLPTQLKDNFNRAPSNQN 586
Score = 30.0 bits (66), Expect = 3.5
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 7/67 (10%)
Query: 19 CQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVCAPG 78
C G C + C C E + G+ C+ + N + + Q + G
Sbjct: 541 CSGHGRCVQGS-----CVCDEQWGGLYCDEPETSLPTQLKDNFNRA--PSNQNWLTVSGG 593
Query: 79 WTGPTCK 85
C
Sbjct: 594 KLSTVCG 600
Score = 29.2 bits (64), Expect = 5.5
Identities = 16/132 (12%), Positives = 28/132 (21%), Gaps = 12/132 (9%)
Query: 57 PCGNGGQCKETAGQFQCVCAPGWTGPTCKI------KHNFFPYLQFIPLTTSLFRLLSDL 110
P WT T + + F + Q P + ++
Sbjct: 472 PTNVECSRYHLQRILVSDTFNKWTRITLPLPSYTRSQATRFRWHQPAPFDKQQTWAIDNV 531
Query: 111 NYCGTHEP-CQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAG 169
C G C + C C E + G+ C+ + N +
Sbjct: 532 YIGDGCLDMCSGHGRCVQGS-----CVCDEQWGGLYCDEPETSLPTQLKDNFNRAPSNQN 586
Query: 170 QFQCVDHDHCNP 181
Sbjct: 587 WLTVSGGKLSTV 598
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 39.6 bits (92), Expect = 0.003
Identities = 15/71 (21%), Positives = 21/71 (29%), Gaps = 1/71 (1%)
Query: 16 HEPCQNGGTCENTAPDQ-YLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCV 74
C G C L I P + + + A +F+C
Sbjct: 341 QALCSGHGRCVRRTSHPKALLLLNPASFSIQLTPGGGPLSLRGALSLEDQAQMAVEFKCR 400
Query: 75 CAPGWTGPTCK 85
C PGW P C+
Sbjct: 401 CYPGWQAPWCE 411
Score = 38.4 bits (89), Expect = 0.007
Identities = 15/74 (20%), Positives = 19/74 (25%), Gaps = 2/74 (2%)
Query: 605 NECEPNPCKNNGTCI--DGHADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSS 662
C C +G C+ H L T G A +
Sbjct: 337 LLCSQALCSGHGRCVRRTSHPKALLLLNPASFSIQLTPGGGPLSLRGALSLEDQAQMAVE 396
Query: 663 FFCHCPPDWEGTSC 676
F C C P W+ C
Sbjct: 397 FKCRCYPGWQAPWC 410
Score = 34.2 bits (78), Expect = 0.16
Identities = 12/77 (15%), Positives = 16/77 (20%), Gaps = 2/77 (2%)
Query: 567 NDCKHNPCQNGGTCV--DKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHAD 624
C C G CV + + +
Sbjct: 337 LLCSQALCSGHGRCVRRTSHPKALLLLNPASFSIQLTPGGGPLSLRGALSLEDQAQMAVE 396
Query: 625 FTCLCKNGWKGKTCTSK 641
F C C GW+ C K
Sbjct: 397 FKCRCYPGWQAPWCERK 413
Score = 33.4 bits (76), Expect = 0.24
Identities = 11/81 (13%), Positives = 21/81 (25%), Gaps = 2/81 (2%)
Query: 258 NCQYDADECQKSPCVNAALGCTNLVG-DYRCNCSPG-WTGHNCDVNINDCVGQCRHGSTC 315
N A C ++ C +P ++ +
Sbjct: 331 NVTSGALLCSQALCSGHGRCVRRTSHPKALLLLNPASFSIQLTPGGGPLSLRGALSLEDQ 390
Query: 316 IDLVNDFHCACLPGYTGRTCQ 336
+ +F C C PG+ C+
Sbjct: 391 AQMAVEFKCRCYPGWQAPWCE 411
Score = 30.7 bits (69), Expect = 1.8
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 14/81 (17%)
Query: 335 CQTDINDCESSPCVNGGECVDQV---NGFRCICPVGFAGQLCENGGTCVNTGDL------ 385
+ C + C G CV + + P F+ QL GG G L
Sbjct: 332 VTSGALLCSQALCSGHGRCVRRTSHPKALLLLNPASFSIQLTPGGGPLSLRGALSLEDQA 391
Query: 386 -----YSCICKEGFEGPDCGQ 401
+ C C G++ P C +
Sbjct: 392 QMAVEFKCRCYPGWQAPWCER 412
Score = 30.7 bits (69), Expect = 1.8
Identities = 13/70 (18%), Positives = 18/70 (25%), Gaps = 2/70 (2%)
Query: 371 QLCENGGTCV--NTGDLYSCICKEGFEGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCEC 428
LC G CV + + S + + F C C
Sbjct: 342 ALCSGHGRCVRRTSHPKALLLLNPASFSIQLTPGGGPLSLRGALSLEDQAQMAVEFKCRC 401
Query: 429 APGFAGPDCR 438
PG+ P C
Sbjct: 402 YPGWQAPWCE 411
Score = 30.3 bits (68), Expect = 2.5
Identities = 12/95 (12%), Positives = 16/95 (16%), Gaps = 21/95 (22%)
Query: 506 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHEN 565
C C G CV S +
Sbjct: 337 LLCSQALCSGHGRCV---------------------RRTSHPKALLLLNPASFSIQLTPG 375
Query: 566 INDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 600
+ F+C C GW+ C
Sbjct: 376 GGPLSLRGALSLEDQAQMAVEFKCRCYPGWQAPWC 410
Score = 29.2 bits (65), Expect = 5.0
Identities = 6/50 (12%), Positives = 10/50 (20%)
Query: 490 CSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 539
+ + F+C C GW+ C
Sbjct: 361 LLLNPASFSIQLTPGGGPLSLRGALSLEDQAQMAVEFKCRCYPGWQAPWC 410
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 34.4 bits (79), Expect = 0.006
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 335 CQTDINDCESSPCVNGGEC--VDQVNGFRCICPVGFAGQLCEN 375
C+NGG C ++ ++ + C C +G++G C+
Sbjct: 2 SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQT 44
Score = 32.9 bits (75), Expect = 0.022
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 18 PCQNGGTCENTAP-DQYLCTCPEGFSGINCEVVD 50
C NGG C + D Y C C G+SG C+ D
Sbjct: 13 YCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRD 46
Score = 32.9 bits (75), Expect = 0.022
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 118 PCQNGGTCENTAP-DQYLCTCPEGFSGINCEVVD 150
C NGG C + D Y C C G+SG C+ D
Sbjct: 13 YCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRD 46
Score = 29.4 bits (66), Expect = 0.38
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 404 NDCSPQPCYNGGKC--VDGVNWFLCECAPGFAGPDC 437
C NGG C ++ ++ + C C G++G C
Sbjct: 7 PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRC 42
Score = 28.6 bits (64), Expect = 0.75
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 227 ECVSNPCQNGGTCVDL--VDGYKCECTQAWEGSNCQY 261
C NGG C+ + +D Y C C + G CQ
Sbjct: 8 SSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQT 44
Score = 28.2 bits (63), Expect = 0.94
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 501 CHENINDCKHNPCQNGGTC--VDKVNSFQCICRDGWEGEICANSN 543
+ C NGG C ++ ++S+ C C G+ G+ C +
Sbjct: 2 SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRD 46
Score = 28.2 bits (63), Expect = 1.1
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 51 NPCMMGPCGNGGQCK--ETAGQFQCVCAPGWTGPTC 84
G C NGG C E+ + C C G++G C
Sbjct: 7 PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRC 42
Score = 28.2 bits (63), Expect = 1.3
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 373 CENGGTCVNTGDL--YSCICKEGFEGPDC 399
C NGG C++ L Y+C C G+ G C
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRC 42
Score = 27.9 bits (62), Expect = 1.3
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 562 CHENINDCKHNPCQNGGTC--VDKVNSFQCICRDGWEGEIC 600
+ C NGG C ++ ++S+ C C G+ G+ C
Sbjct: 2 SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRC 42
Score = 26.7 bits (59), Expect = 3.7
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 682 NACKSNPCKNGGTCVNTGDL--YSCICKEGFV 711
+ C NGG C++ L Y+C C G+
Sbjct: 7 PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYS 38
Score = 26.3 bits (58), Expect = 5.7
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 309 CRHGSTCIDL--VNDFHCACLPGYTGRTCQT 337
C +G C+ + ++ + C C+ GY+G CQT
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCQT 44
Score = 25.5 bits (56), Expect = 9.3
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 605 NECEPNPCKNNGTC--IDGHADFTCLCKNGWKGKTCTSKN 642
C N G C I+ +TC C G+ G C +++
Sbjct: 7 PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRD 46
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 38.6 bits (89), Expect = 0.006
Identities = 43/240 (17%), Positives = 72/240 (30%), Gaps = 10/240 (4%)
Query: 480 CVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 539
++ SF+C+ + +N DC+ + C C
Sbjct: 124 VLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHC 183
Query: 540 ANSNQSGGSFKCS----CDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNS--FQCICRD 593
+ S++C C + C C +G C+ + C+D
Sbjct: 184 LSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDG-NCIHGSRQCDREYDCKD 242
Query: 594 GWEGEICANNKNECEPNPCK-NNGTCIDGHA--DFTCLCKNGWKGKTCTSKNGHCDRGTC 650
+ C N PN K ++G CI + C++ C
Sbjct: 243 MSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNG 302
Query: 651 KHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGGTCVNTGDLYSCICKEGF 710
C DL + C CP ++ + + +P CVN Y C C+EGF
Sbjct: 303 GCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGF 362
Score = 32.9 bits (74), Expect = 0.41
Identities = 24/228 (10%), Positives = 47/228 (20%), Gaps = 5/228 (2%)
Query: 119 CQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGP--CGNGGQCKETA---GQFQC 173
C +G + C + + C V C +G C
Sbjct: 222 CSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDC 281
Query: 174 VDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPC 233
D C N + + ++ + + +P
Sbjct: 282 RDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPD 341
Query: 234 QNGGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNCSPGW 293
CV+L GYKC+C + ++ + +
Sbjct: 342 TCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSL 401
Query: 294 TGHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDIND 341
+ +V D L G + +
Sbjct: 402 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 449
Score = 32.5 bits (73), Expect = 0.63
Identities = 41/228 (17%), Positives = 63/228 (27%), Gaps = 26/228 (11%)
Query: 490 CSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSF 549
C C C + D C+D + E CA + F
Sbjct: 165 GLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDG----GPDCKDKSDEENCAVATCRPDEF 220
Query: 550 KCS----------------CDAGFSGKYCHENINDCKHNPCQ-NGGTCV--DKVNSFQCI 590
+CS C C N + + G C+ DKV +
Sbjct: 221 QCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARD 280
Query: 591 CRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWK---GKTCTSKNGHCDR 647
CRD + I NEC N + C D + CLC +G++ + C + D
Sbjct: 281 CRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDP 340
Query: 648 GTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGKLNACKSNPCKNGGTC 695
TC + G C + + + + N
Sbjct: 341 DTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEV 388
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 34.7 bits (79), Expect = 0.008
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 340 NDCESSPCVNGGEC-----VDQVNGFRCICPVGFAGQLCEN 375
+ E + CVNGGEC + + + C C GF G C
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTE 47
Score = 28.2 bits (62), Expect = 1.6
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 404 NDCSPQPCYNGGKC-----VDGVNWFLCECAPGFAGPDC 437
+ C NGG+C + + +LC+C PGF G C
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARC 45
Score = 28.2 bits (62), Expect = 1.7
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 17 EPCQNGGTC----ENTAPDQYLCTCPEGFSGINCE 47
C NGG C + + P +YLC C GF+G C
Sbjct: 12 TFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 46
Score = 28.2 bits (62), Expect = 1.7
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 117 EPCQNGGTC----ENTAPDQYLCTCPEGFSGINCE 147
C NGG C + + P +YLC C GF+G C
Sbjct: 12 TFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 46
Score = 27.0 bits (59), Expect = 4.0
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 506 NDCKHNPCQNGGTC-----VDKVNSFQCICRDGWEGEICANS 542
+ + C NGG C + + + C C+ G+ G C +
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTEN 48
Score = 27.0 bits (59), Expect = 4.2
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 605 NECEPNPCKNNGTC-----IDGHADFTCLCKNGWKGKTCTSK 641
E E C N G C + + + C C+ G+ G CT
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTEN 48
Score = 26.6 bits (58), Expect = 4.9
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 567 NDCKHNPCQNGGTC-----VDKVNSFQCICRDGWEGEICANN 603
+ + C NGG C + + + C C+ G+ G C N
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTEN 48
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 37.3 bits (86), Expect = 0.013
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 11/60 (18%)
Query: 330 YTGRTCQTDINDCESSPCVNGG---------ECVDQVNGFRCICPVGFAGQLCENGGTCV 380
+ T +N CE + NGG + F C CP G L + +C+
Sbjct: 258 FHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGM--LLARDMRSCL 315
Score = 29.3 bits (65), Expect = 4.7
Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 13/49 (26%)
Query: 605 NECEPNPCKNNG---------TCIDGHADFTCLCKNGWK----GKTCTS 640
N CE N G FTC C +G ++C +
Sbjct: 268 NWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLT 316
Score = 28.5 bits (63), Expect = 7.5
Identities = 12/57 (21%), Positives = 16/57 (28%), Gaps = 13/57 (22%)
Query: 41 FSGINCEVVDNPCMMGPCGNGG---------QCKETAGQFQCVCAPGWT----GPTC 84
F + N C NGG Q + +F C C G +C
Sbjct: 258 FHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 314
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 36.0 bits (82), Expect = 0.018
Identities = 19/88 (21%), Positives = 24/88 (27%), Gaps = 15/88 (17%)
Query: 287 CNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSP 346
C G D + G+T +T
Sbjct: 107 FPCLGXQDGVAAF--EVDVIVMNSEGNTI----------LXTPQNAIFFKTCQQAECPGG 154
Query: 347 CVNGGECVDQVNGFRCICPVGFAGQLCE 374
C NGG C ++ C CP GF G CE
Sbjct: 155 CRNGGFCNER---RICECPDGFHGPHCE 179
Score = 33.7 bits (76), Expect = 0.12
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 287 CNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDI 339
+P +C G CR+G C C C G+ G C+
Sbjct: 133 ILXTPQNAIFFKTCQQAECPGGCRNGGFC---NERRICECPDGFHGPHCEGTK 182
Score = 33.4 bits (75), Expect = 0.14
Identities = 18/74 (24%), Positives = 22/74 (29%), Gaps = 10/74 (13%)
Query: 18 PCQNGGTCENTAPDQYLCTCPEGFS-------GINCEVVDNPCMMGPCGNGGQCKETAGQ 70
PC + EG + I + G C NGG C E
Sbjct: 108 PCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNERR-- 165
Query: 71 FQCVCAPGWTGPTC 84
C C G+ GP C
Sbjct: 166 -ICECPDGFHGPHC 178
Score = 33.4 bits (75), Expect = 0.15
Identities = 18/98 (18%), Positives = 24/98 (24%), Gaps = 8/98 (8%)
Query: 119 CQNGGTCENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVDHDH 178
G + Q C G+ VD M G T
Sbjct: 91 PLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVM---NSEGNTILXTPQNAIFFKTCQ 147
Query: 179 CN--PNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPR 214
P C NG C C C + + G +C +
Sbjct: 148 QAECPGGCRNGGFC---NERRICECPDGFHGPHCEGTK 182
Score = 33.0 bits (74), Expect = 0.19
Identities = 17/74 (22%), Positives = 21/74 (28%), Gaps = 4/74 (5%)
Query: 364 CPVGFAGQLCENGGTCVNTGDLYSCICKEGFEGPDCGQDINDCSPQPCYNGGKCVDGVNW 423
C G V + + + P C NGG C +
Sbjct: 109 CLGXQDGVAAFEVDVIVMNSEGNTILXT-PQNAIFFKTCQQAECPGGCRNGGFCNERRI- 166
Query: 424 FLCECAPGFAGPDC 437
CEC GF GP C
Sbjct: 167 --CECPDGFHGPHC 178
Score = 32.2 bits (72), Expect = 0.37
Identities = 23/129 (17%), Positives = 32/129 (24%), Gaps = 5/129 (3%)
Query: 445 ASNPCGYGKEILTVQSRSRSPAYLCVSNPAYLVARCVSQSGGSFKCSCDAGFSGKYCHEN 504
A+ Y E L+++S N L S C G E
Sbjct: 62 AAGQAEYFYEFLSLRSLDXGIMADPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEV 121
Query: 505 INDCKHNPCQNGGTCVDKVNSFQCI--CRDGWEGEICANSNQSGGSFKCSCDAGFSGKYC 562
G T + + C+ C N C C GF G +C
Sbjct: 122 DVIV---MNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFHGPHC 178
Query: 563 HENINDCKH 571
+ H
Sbjct: 179 EGTKHHHHH 187
Score = 31.8 bits (71), Expect = 0.43
Identities = 12/83 (14%), Positives = 20/83 (24%), Gaps = 3/83 (3%)
Query: 179 CNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQNGGT 238
+ A + N + C+NGG
Sbjct: 101 SVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGF 160
Query: 239 CVDLVDGYKCECTQAWEGSNCQY 261
C + CEC + G +C+
Sbjct: 161 C---NERRICECPDGFHGPHCEG 180
Score = 30.3 bits (67), Expect = 1.7
Identities = 16/108 (14%), Positives = 22/108 (20%), Gaps = 16/108 (14%)
Query: 573 PCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNG 632
P V C +G T
Sbjct: 91 PLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVM---NSEGNTI----------LXTP 137
Query: 633 WKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHIGK 680
+ G C++GG C + C CP + G C K
Sbjct: 138 QNAIFFKTCQQAECPGGCRNGGFCNERRI---CECPDGFHGPHCEGTK 182
Score = 29.9 bits (66), Expect = 2.3
Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 6/105 (5%)
Query: 45 NCEVVDNPCMMGPCGNGGQCKETAGQFQCVCAPGWTGPTCKIKHNFFPYLQF--IPLTTS 102
+ ++ +P + P + Q C G + I T
Sbjct: 79 DXGIMADPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQ 138
Query: 103 LFRLLSDLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCE 147
C+NGG C + +C CP+GF G +CE
Sbjct: 139 NAIFFKTCQQAECPGGCRNGGFCNE----RRICECPDGFHGPHCE 179
Score = 29.5 bits (65), Expect = 3.2
Identities = 16/92 (17%), Positives = 24/92 (26%), Gaps = 7/92 (7%)
Query: 512 PCQNGGTCVDKVNSFQCICRDGWEGEICANSN---QSGGSFKCSCDAGFSGKYCHENIND 568
P V C +G + + + + +
Sbjct: 91 PLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAE 150
Query: 569 CKHNPCQNGGTCVDKVNSFQCICRDGWEGEIC 600
C C+NGG C C C DG+ G C
Sbjct: 151 C-PGGCRNGGFC---NERRICECPDGFHGPHC 178
Score = 29.1 bits (64), Expect = 4.1
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 4 FRLLSDLNYCGTHEPCQNGGTCENTAPDQYLCTCPEGFSGINCE 47
C+NGG C + +C CP+GF G +CE
Sbjct: 140 AIFFKTCQQAECPGGCRNGGFCNE----RRICECPDGFHGPHCE 179
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 32.1 bits (73), Expect = 0.049
Identities = 9/41 (21%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 337 TDINDCESSPCVNGGEC--VDQVNGFRCICPVGFAGQLCEN 375
++ C++ G C ++ ++ + C C VG+ G+ C+
Sbjct: 4 SECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQY 44
Score = 30.2 bits (68), Expect = 0.21
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 19 CQNGGTCENTAP-DQYLCTCPEGFSGINCEVVD 50
C + G C D+Y C C G+ G C+ D
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGERCQYRD 46
Score = 30.2 bits (68), Expect = 0.21
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 119 CQNGGTCENTAP-DQYLCTCPEGFSGINCEVVD 150
C + G C D+Y C C G+ G C+ D
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGERCQYRD 46
Score = 26.7 bits (59), Expect = 4.0
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 51 NPCMMGPCGNGGQCK--ETAGQFQCVCAPGWTGPTC 84
G C + G C E ++ C C G+ G C
Sbjct: 7 PLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERC 42
Score = 26.7 bits (59), Expect = 4.1
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 411 CYNGGKC--VDGVNWFLCECAPGFAGPDC 437
C + G C ++ ++ + C C G+ G C
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGERC 42
Score = 26.3 bits (58), Expect = 5.3
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 364 CPVGFAGQLCENGGTCVNTGDL--YSCICKEGFEGPDC 399
CP+ G C + G C+ L Y+C C G+ G C
Sbjct: 6 CPLSHDG-YCLHDGVCMYIEALDKYACNCVVGYIGERC 42
Score = 26.0 bits (57), Expect = 8.2
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 223 DDIDECVSNPCQNGGTC--VDLVDGYKCECTQAWEGSNCQY 261
+ C + G C ++ +D Y C C + G CQY
Sbjct: 4 SECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQY 44
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 31.4 bits (71), Expect = 0.078
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 364 CPVGFAGQLCENGGTC----VNTGDLYSCICKEGFEGPDC 399
CP F C N C + +YSC C GF G C
Sbjct: 7 CPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRC 46
Score = 29.5 bits (66), Expect = 0.49
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 341 DCESSPCVNGGEC----VDQVNGFRCICPVGFAGQLCEN 375
++ C+N C + + + C C +GF GQ CE
Sbjct: 10 TFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY 48
Score = 28.3 bits (63), Expect = 1.1
Identities = 11/36 (30%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 18 PCQNGGTC---ENTAPDQYLCTCPEGFSGINCEVVD 50
C N C + Y C C GF G CE +
Sbjct: 15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKE 50
Score = 28.3 bits (63), Expect = 1.1
Identities = 11/36 (30%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 118 PCQNGGTC---ENTAPDQYLCTCPEGFSGINCEVVD 150
C N C + Y C C GF G CE +
Sbjct: 15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKE 50
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 33.6 bits (77), Expect = 0.099
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 254 WEGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNCSPGWT----GHNCDVN 301
+ D +EC V + C N +G Y C+C P + NC VN
Sbjct: 108 FAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGVN 159
Score = 27.9 bits (62), Expect = 8.0
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 329 GYTGRTCQTDINDCESSPCVN-GGECVDQVNGFRCICPVGFAGQLCENGGTC 379
G+ TDIN+C V C + + G+ C CP + L ++ C
Sbjct: 107 GFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEY--FLHDDMKNC 156
Score = 27.9 bits (62), Expect = 8.1
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 556 GFSGKYCHENINDCKHNPCQN-GGTCVDKVNSFQCICRDGWEGEICANNKNECEPN 610
GF+ Y +IN+C C + + + C C + + + KN C N
Sbjct: 107 GFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEY--FLHDDMKN-CGVN 159
Score = 27.9 bits (62), Expect = 9.0
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 292 GWTGHNCDVNINDCVGQCRHGS--TCIDLVNDFHCACLPGYTGRTCQTDINDCE 343
G+ + +IN+C C + + + C+C P Y D+ +C
Sbjct: 107 GFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFL---HDDMKNCG 157
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 33.4 bits (76), Expect = 0.13
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 259 CQYDADECQKSPC--VNAALGCTNLVGDYRCNCSPGWTGHNCDVNIND 304
D DECQ +P C N +G + C+C G+ H ++
Sbjct: 120 AAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 167
Score = 29.9 bits (67), Expect = 1.6
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 556 GFSGKYCHENINDCKHNPCQNGG---TCVDKVNSFQCICRDGWEGEICANNKNECEPN 610
GF Y E+I++C+ P + C + + F C CR G+ + N + E +
Sbjct: 114 GFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGY--VLHRNKRTCSEQS 169
Score = 29.1 bits (65), Expect = 2.9
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 495 GFSGKYCHENINDCKHNPCQNGG---TCVDKVNSFQCICRDGWE 535
GF Y E+I++C+ P + C + + F C CR G+
Sbjct: 114 GFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYV 157
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 34.4 bits (78), Expect = 0.17
Identities = 33/168 (19%), Positives = 46/168 (27%), Gaps = 17/168 (10%)
Query: 137 CPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQFQCVDHDHCNPNPCLNGAPCFNTQAD 196
C + NC V C +G G QC C G
Sbjct: 219 CKDKSDEENCAVATCRPDEFQCSDG---NCIHGSRQCDREYDCKDMSDEVGCVNVTLCEG 275
Query: 197 YYCHCTEDWEGKNCSFPRYKCD-----------NPPCDDIDECVSNPCQNGGTCVDLVDG 245
E C C+ +EC+ N C DL G
Sbjct: 276 PNKFKCHSGE---CITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIG 332
Query: 246 YKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNCSPGW 293
Y+C C ++ + D + + C NL G Y+C C G+
Sbjct: 333 YECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGF 380
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 33.6 bits (76), Expect = 0.24
Identities = 12/116 (10%), Positives = 28/116 (24%), Gaps = 7/116 (6%)
Query: 243 VDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCDVNI 302
T S + + Q + ++ + S + C +
Sbjct: 215 QYQDYIYWTDWSRRSIERANKTSGQNRTIIQG--HLDYVMDILVFHSSRQSGWNECASSN 272
Query: 303 NDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVN 358
C C V F C C Y+ + + + ++++
Sbjct: 273 GHCSHLC-----LAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMV 323
Score = 31.3 bits (70), Expect = 1.4
Identities = 11/98 (11%), Positives = 26/98 (26%), Gaps = 3/98 (3%)
Query: 489 KCSCDAGFSGKYCHENINDCKHNP-CQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGG 547
+ A + I + +C +G +C G
Sbjct: 228 RSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAV--PVG 285
Query: 548 SFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVN 585
F C C A +S + + + + ++++
Sbjct: 286 GFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMV 323
Score = 29.0 bits (64), Expect = 7.3
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 480 CVSQSGGSFKCSCDAGFS----GKYCHENINDCKHN 511
C+ + G+ +CSC C + H+
Sbjct: 593 CLVKGDGTTRCSCPMHLVLLQDELSCGGTKHHHHHH 628
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 33.4 bits (75), Expect = 0.25
Identities = 20/86 (23%), Positives = 24/86 (27%), Gaps = 19/86 (22%)
Query: 352 ECVDQVNGFRCICPVGFAGQLCENGGTCVNTGDLYSCICKEGFEGPDCGQDINDCSPQPC 411
C + I PVGF L + C C C S +
Sbjct: 405 GCPQEKEKSFTIKPVGFKDSL--------IVQVTFDCDC-------ACQAQAEPNSHRCN 449
Query: 412 YNGGKCVDGVNWFLCECAPGFAGPDC 437
G GV C C PG+ G C
Sbjct: 450 NGNGTFECGV----CRCGPGWLGSQC 471
Score = 29.9 bits (66), Expect = 3.2
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 606 ECEPNPCKNNGTCIDGHADFT---CLCKNGWKGKTC 638
C+ N+ C +G+ F C C GW G C
Sbjct: 436 ACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQC 471
Score = 29.5 bits (65), Expect = 4.9
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 52 PCMMGPCGNGGQCKETAGQFQ---CVCAPGWTGPTC 84
C N +C G F+ C C PGW G C
Sbjct: 436 ACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQC 471
Score = 29.1 bits (64), Expect = 5.8
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 265 ECQKSPCVNAALGCTNLVGDY---RCNCSPGWTGHNCD 299
CQ N+ C N G + C C PGW G C+
Sbjct: 436 ACQAQAEPNSHR-CNNGNGTFECGVCRCGPGWLGSQCE 472
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation,
EGF-like domain, endoplasmic reticulum, glycoprotein,
golgi apparatus; 1.50A {Drosophila melanogaster} PDB:
3c9a_C 3ltg_D
Length = 52
Score = 29.9 bits (67), Expect = 0.28
Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 364 CPVGFAGQLCENGGTCVNT----GDLYSCICKEGFEGPDC 399
CP F C N C +YSC C GF G C
Sbjct: 7 CPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRC 46
Score = 27.6 bits (61), Expect = 2.0
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 19 CQNGGTC---ENTAPDQYLCTCPEGFSGINCEVVD 50
C N C + Y C C GF G CE +
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKE 50
Score = 27.6 bits (61), Expect = 2.0
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 119 CQNGGTC---ENTAPDQYLCTCPEGFSGINCEVVD 150
C N C + Y C C GF G CE +
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKE 50
Score = 26.8 bits (59), Expect = 4.1
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 347 CVNGGEC----VDQVNGFRCICPVGFAGQLCEN 375
C+N C + + + C C +GF GQ CE
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY 48
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 32.8 bits (74), Expect = 0.36
Identities = 12/70 (17%), Positives = 17/70 (24%), Gaps = 5/70 (7%)
Query: 603 NKNECEPN--PCKNNGTCIDGHADFTCLCKNG--WKGKTCTSKNG-HCDRGTCKHGGTCA 657
+ C N C + C D F C C G+ C ++ G K
Sbjct: 4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVG 63
Query: 658 DLGSSFFCHC 667
Sbjct: 64 SSQVPVVFEN 73
Score = 31.3 bits (70), Expect = 0.98
Identities = 14/106 (13%), Positives = 27/106 (25%), Gaps = 15/106 (14%)
Query: 278 CTNLVGDYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVND--------FHCACLPG 329
C + + C C +TG N + + Q +G + F L
Sbjct: 21 CRDYATGFCCRCVANYTG-NGRQCVAEGSPQRVNG-KVKGRIFVGSSQVPVVFENTDLHS 78
Query: 330 Y---TGRTCQTDINDCESS--PCVNGGECVDQVNGFRCICPVGFAG 370
Y T I+ + + + + G+
Sbjct: 79 YVVMNHGRSYTAISTIPETVGYSLLPLAPIGGIIGWMFAVEQDGFK 124
Score = 30.9 bits (69), Expect = 1.4
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 539 CANSNQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNS 586
A F C C A ++G + + +P + G ++
Sbjct: 18 HAECRDYATGFCCRCVANYTGN-GRQ--CVAEGSPQRVNGKVKGRIFV 62
Score = 30.9 bits (69), Expect = 1.4
Identities = 10/66 (15%), Positives = 14/66 (21%), Gaps = 4/66 (6%)
Query: 645 CDRGT--CKHGGTCADLGSSFFCHCPP--DWEGTSCHIGKLNACKSNPCKNGGTCVNTGD 700
C C C D + F C C G C + K ++
Sbjct: 8 CANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGSSQV 67
Query: 701 LYSCIC 706
Sbjct: 68 PVVFEN 73
Score = 30.1 bits (67), Expect = 2.2
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 308 QCRHGSTCIDLVNDFHCACLPGYTGR--TCQTDINDCESSPCVNG 350
QC + C D F C C+ YTG C + + + V G
Sbjct: 14 QCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKG 58
Score = 29.7 bits (66), Expect = 3.4
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 478 ARCVSQSGGSFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNS 525
A C + G F C C A ++G + + +P + G ++
Sbjct: 19 AECRDYATG-FCCRCVANYTGN-GRQ--CVAEGSPQRVNGKVKGRIFV 62
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 32.3 bits (73), Expect = 0.39
Identities = 22/105 (20%), Positives = 30/105 (28%), Gaps = 4/105 (3%)
Query: 199 CHCTEDWEGKNCSFPR--YKCDNPPCDDIDECVSNPCQNGGTCVDLVDGYKC--ECTQAW 254
C C + GKNC + S C G CV +
Sbjct: 109 CRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLI 168
Query: 255 EGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNCSPGWTGHNCD 299
G C+ D C++ L +C C PG+ G C
Sbjct: 169 YGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQ 213
Score = 30.0 bits (67), Expect = 2.0
Identities = 28/150 (18%), Positives = 41/150 (27%), Gaps = 22/150 (14%)
Query: 113 CGTHEPCQNGGTC-ENTAPDQYLCTCPEGFSGINCEVVDNPCMMGPCGNGGQCKETAGQF 171
C + ++ C + +C C G+ G NCE G C++
Sbjct: 86 CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCEC--QTQGRSSQELEGSCRKDNNSI 143
Query: 172 QCVDHDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSN 231
C C CL + G+ C C+
Sbjct: 144 ICSGLGDCVCGQCLCHTSDV---------PGKLIYGQYCECDTINCERYNGQV------C 188
Query: 232 PCQNGGTCVDLVDGYKCECTQAWEGSNCQY 261
G C KC C +EGS CQ+
Sbjct: 189 GGPGRGLCFC----GKCRCHPGFEGSACQH 214
Score = 29.2 bits (65), Expect = 3.5
Identities = 27/137 (19%), Positives = 37/137 (27%), Gaps = 28/137 (20%)
Query: 562 CHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNE-------------CE 608
C + C G + C C G+ G+ C
Sbjct: 86 CRCRDQSRDRSLCHGKGFLECGI----CRCDTGYIGKNCECQTQGRSSQELEGSCRKDNN 141
Query: 609 PNPCKNNGTCIDGHADFTCLCKNGWKGKTCTS-KNGHCDRGTC--KHGGTCADLG----S 661
C G C+ G CLC + CD C +G C G
Sbjct: 142 SIICSGLGDCVCG----QCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCF 197
Query: 662 SFFCHCPPDWEGTSCHI 678
C C P +EG++C
Sbjct: 198 CGKCRCHPGFEGSACQH 214
Score = 28.8 bits (64), Expect = 5.7
Identities = 20/104 (19%), Positives = 27/104 (25%), Gaps = 21/104 (20%)
Query: 334 TCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVNTGDLYSCICKEG 393
C+ + S C G + C C G+ G+ CE C +
Sbjct: 85 ECRCRDQSRDRSLCHGKGFLECGI----CRCDTGYIGKNCE-------------CQTQGR 127
Query: 394 FEGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDC 437
G D + C G CV G C C
Sbjct: 128 SSQELEGSCRKDNNSIICSGLGDCVCGQ----CLCHTSDVPGKL 167
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 32.3 bits (72), Expect = 0.56
Identities = 20/102 (19%), Positives = 28/102 (27%), Gaps = 10/102 (9%)
Query: 287 CNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSP 346
P + ++ C C CI V C C GYT N S
Sbjct: 177 QKNVPPFGLDGVYIS-EPCPSYCSGHGDCISGV----CFCDLGYTAAQGTCVSNTPNHSE 231
Query: 347 CVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVNTGDLYSC 388
+ E ++ GQ+ GT + LY
Sbjct: 232 MFDRFEGKLSPLWYKIT-----GGQVGTGCGTLNDGRSLYFN 268
Score = 30.4 bits (67), Expect = 2.5
Identities = 17/139 (12%), Positives = 35/139 (25%), Gaps = 14/139 (10%)
Query: 513 CQNGGTCVDKVNSFQCICRDGWEG---EICANSNQSGGSFKCSCDAGFSGKYCHENINDC 569
C+ + + + + W I + S F+ ++ ++
Sbjct: 129 CEGNSRELSEPTVYYTGDFEEWTRITIAIPRSLASSKTRFRWIQESSSQKNVPPFGLDGV 188
Query: 570 KHN-----PCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHAD 624
+ C G C+ V C C G+ N + +
Sbjct: 189 YISEPCPSYCSGHGDCISGV----CFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLW 244
Query: 625 FTCLCKNGWKGKTCTSKNG 643
+ G G C + N
Sbjct: 245 YK--ITGGQVGTGCGTLND 261
Score = 28.5 bits (62), Expect = 8.8
Identities = 14/63 (22%), Positives = 17/63 (26%), Gaps = 5/63 (7%)
Query: 387 SCICKEGFEGPDCGQDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININECAS 446
S G D C P C G C+ GV C C G+ N
Sbjct: 175 SSQKNVPPFGLDGVYISEPC-PSYCSGHGDCISGV----CFCDLGYTAAQGTCVSNTPNH 229
Query: 447 NPC 449
+
Sbjct: 230 SEM 232
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 32.2 bits (72), Expect = 0.68
Identities = 25/210 (11%), Positives = 37/210 (17%), Gaps = 13/210 (6%)
Query: 176 HDHCNPNPCLNGAPCFNTQADYYCHCTEDWEGKNCSFPRYKCDNPPCDDIDECVSNPCQN 235
C C + + P C N + C
Sbjct: 167 DPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCL- 225
Query: 236 GGTCVDLVDGYKCECTQAWEGSNCQYDADECQKSPCVNAALGCTNLVGDYRCNCSPGWTG 295
C D C+ T Y+ Q G P
Sbjct: 226 --VCRKFRDEATCKDTCP---PLMLYNPTTYQMDVNPE----GKYSFGATCVKKCPRNYV 276
Query: 296 HNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGGECVD 355
CV C S ++ C G + C +
Sbjct: 277 VTDH---GSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIK 333
Query: 356 QVNGFRCICPVGFAGQLCENGGTCVNTGDL 385
I + G + +T L
Sbjct: 334 HFKNCTSISGDLHILPVAFRGDSFTHTPPL 363
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 32.1 bits (72), Expect = 0.73
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 328 PGYTGRTCQTDINDCESSPCVNGG---ECVDQVNGFRCICPVGFAGQLCENGGTCV 380
T + NGG C+ + G RC CP+GF +L + TC+
Sbjct: 564 LMGLKATNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGF--ELISDMKTCI 617
Score = 28.6 bits (63), Expect = 7.6
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 12 YCGTHEPCQNGGTCENT---APDQYLCTCPEGFS 42
G++ + G C + P C CP GF
Sbjct: 575 VIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFE 608
Score = 28.6 bits (63), Expect = 7.6
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 112 YCGTHEPCQNGGTCENT---APDQYLCTCPEGFS 142
G++ + G C + P C CP GF
Sbjct: 575 VIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFE 608
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 32.2 bits (72), Expect = 0.74
Identities = 33/229 (14%), Positives = 58/229 (25%), Gaps = 31/229 (13%)
Query: 145 NCEVVDNPCMMGPCGNGGQCKETAGQFQCVDHDHCNPNPCLNGAPCFNTQADYYCHCTED 204
C + G +C H HC T CH
Sbjct: 154 ECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECL 213
Query: 205 WEGKNCSFPRYKCDNPPCDDIDECVSNPCQN---GGTCVD-----LVDGYKCECTQAWEG 256
NCS DD +CV+ C+N G CV+ C
Sbjct: 214 ---GNCS---------QPDDPTKCVA--CRNFYLDGRCVETCPPPYYHFQDWRCVNFSFC 259
Query: 257 SNCQYDADECQKSPCVNAALGCTNLVGDYRC--NCSPGWTGHNCDVNINDCVGQCRHGST 314
+ + ++ C ++ + +C C G+T ++ ++ C+G C
Sbjct: 260 QDLHHKCKNSRRQGCHQ------YVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCH 313
Query: 315 CIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCI 363
++ + R C + + I
Sbjct: 314 LLE-GEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLI 361
Score = 31.4 bits (70), Expect = 1.3
Identities = 32/203 (15%), Positives = 49/203 (24%), Gaps = 38/203 (18%)
Query: 489 KCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGS 548
C A IN C C Q +C C + +
Sbjct: 158 ICPGTAKGKTNCPATVINGQFVERCWTHSHC-------QKVCPTI-----CKSHGCTAEG 205
Query: 549 FKC--SCDAGFSGKYCHENINDCKHNPCQNGGTCVDKV--NSFQCICRDGWEGEICANNK 604
C C S C++ G CV+ + C +
Sbjct: 206 LCCHSECLGNCSQPDDPTKCVACRNF--YLDGRCVETCPPPYYHFQDWRCVNFSFCQDLH 263
Query: 605 NECEPNPCKN-------NGTCIDGHADFTCLCKNGWKGKTCTSKNGHC--DRGTCKHGGT 655
++C+ + + N CI C +G+ T S N C G C
Sbjct: 264 HKCKNSRRQGCHQYVIHNNKCIP-------ECPSGY---TMNSSNLLCTPCLGPCPKVCH 313
Query: 656 CADLGSSFFCHCPPDWEGTSCHI 678
+ G E C +
Sbjct: 314 LLE-GEKTIDSVTSAQELRGCTV 335
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 31.5 bits (70), Expect = 1.2
Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 3/89 (3%)
Query: 303 NDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGGEC--VDQVNGF 360
+ C+ C+ C L C T + V G+C ++ +GF
Sbjct: 61 SKCLEPCKESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAPEKASGF 120
Query: 361 RCICPVG-FAGQLCENGGTCVNTGDLYSC 388
C C C + G ++C
Sbjct: 121 AAACVESCEVDNECSGVKKCCSNGCGHTC 149
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold,
transfer ribosylation; HET: SO4; 1.75A {Homo sapiens}
PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A*
3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A*
3uh2_A* 3uh4_A* 4dvi_A*
Length = 240
Score = 30.9 bits (69), Expect = 1.4
Identities = 10/101 (9%), Positives = 24/101 (23%)
Query: 509 KHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHENIND 568
+++ N I G++ G + ++ S +Y +
Sbjct: 97 ENHNHANERMLFHGSPFVNAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGG 156
Query: 569 CKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEP 609
++ + C G + K P
Sbjct: 157 TGCPVHKDRSCYICHRQLLFCRVTLGKSFLQFSAMKMAHSP 197
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 31.1 bits (69), Expect = 1.5
Identities = 9/48 (18%), Positives = 13/48 (27%), Gaps = 3/48 (6%)
Query: 525 SFQCICRDGWEGEICANSNQSGGSF---KCSCDAGFSGKYCHENINDC 569
C C + + G CSC G G+ C +
Sbjct: 452 HTLCDCNCSDTQPQAPHCSDGQGHLQCGVCSCAPGRLGRLCESRGLEN 499
Score = 29.9 bits (66), Expect = 3.5
Identities = 12/47 (25%), Positives = 13/47 (27%), Gaps = 5/47 (10%)
Query: 398 DCGQDINDCSPQPCYNGGKCVDGVNWFLCECAPGFAGPDCRININEC 444
+C G GV C CAPG G C E
Sbjct: 458 NCSDTQPQAPHC-SDGQGHLQCGV----CSCAPGRLGRLCESRGLEN 499
Score = 29.5 bits (65), Expect = 4.3
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 11/59 (18%)
Query: 284 DYRCNCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYTGRTCQTDINDC 342
C+C+ T + +D G + G C+C PG GR C++ +
Sbjct: 452 HTLCDCNCSDTQPQAP-HCSDGQGHLQCG----------VCSCAPGRLGRLCESRGLEN 499
Score = 28.7 bits (63), Expect = 7.6
Identities = 12/60 (20%), Positives = 16/60 (26%), Gaps = 12/60 (20%)
Query: 548 SFKCSCDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNEC 607
C C+ C + H G V C C G G +C + E
Sbjct: 452 HTLCDCN-------CSDTQPQAPHC-SDGQGHLQCGV----CSCAPGRLGRLCESRGLEN 499
Score = 28.7 bits (63), Expect = 8.7
Identities = 11/60 (18%), Positives = 14/60 (23%), Gaps = 12/60 (20%)
Query: 586 SFQCICRDGWEGEICANNKNECEPNPCKNNGTCIDGHADFTCLCKNGWKGKTCTSKNGHC 645
C C P+ G G C C G G+ C S+
Sbjct: 452 HTLCDCNCSDTQPQA--------PHCSDGQGHLQCGV----CSCAPGRLGRLCESRGLEN 499
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 1.8
Identities = 73/485 (15%), Positives = 117/485 (24%), Gaps = 186/485 (38%)
Query: 61 GGQCKETAGQFQCVCAPGWTGPTCKIKHNFFPYLQFI-----PLTTSLFR----LLSDLN 111
GGQ G T ++F L+ + L L + LS+L
Sbjct: 161 GGQ-----------------GNT----DDYFEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 112 YCGTHEP--CQNG------GTCENTAPDQ-YLCTCPEGFSGIN----------CEVVD-N 151
G + PD+ YL + P I +++
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT 259
Query: 152 PCMMGPCGNGGQCKETAGQFQCVDHDHCNPNPCLNG---APCF---NTQADYYCHCTED- 204
P + G G G A ++ ++ +
Sbjct: 260 PGELRSYLKG-----ATG--------------HSQGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 205 ----WEGKNC--SFPRYKCDNPPCDDIDECVSNPCQNGGTCVDL-VDGYKCECTQAW-EG 256
+ G C ++P + P +++ + N G L + E Q +
Sbjct: 301 TVLFFIGVRCYEAYPNT---SLPPSILEDSLEN--NEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 257 SNCQYDADECQKSPCVNAAL--GCTNLV--GD----YRCN-------CSPGWTGHNCDVN 301
+N A + V +L G NLV G Y N G D
Sbjct: 356 TNSHLPAGK-----QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG-----LD-- 403
Query: 302 INDCVGQCR--HGSTCIDLVNDF-------HCACLPGYTGRTCQTDINDCESSPCVNGGE 352
Q R + N F H L + + D +
Sbjct: 404 ------QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINK----DLVKNNV----- 448
Query: 353 CVDQVNGFRCICPV--GFAGQ-LCENGGTCVNTGDLYSCICKEGFEGPDCGQDINDCSPQ 409
N PV F G L G+ + + CI + P
Sbjct: 449 ---SFNAKDIQIPVYDTFDGSDLRVLSGSI--SERIVDCIIRL----P------------ 487
Query: 410 PCYNGGKCVDGVNWFLCECAPGFA-------GPDCRININE-CASNPCGYGKEILTVQSR 461
V W E F GP + N G G ++ +
Sbjct: 488 -----------VKW---ETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL 533
Query: 462 SRSPA 466
+P
Sbjct: 534 DINPD 538
>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody,
FAB, ternary complex, immune SY hydrolase; HET: PGE NAG
FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1
g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A*
1kdu_A
Length = 122
Score = 29.0 bits (64), Expect = 2.0
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 119 CQNGGTCENTAP--DQYLCTCPEGFSGINCEVVDNPCMMGPCGNG--GQCKETAGQFQCV 174
C NGGTC + + + C CP+ F G +CE+ + G+ G+ C+
Sbjct: 3 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTCYEGNGHFYRGKASTDTMGRPCL 62
Query: 175 DHDHCNPNP 183
+
Sbjct: 63 PWNSATVLQ 71
Score = 29.0 bits (64), Expect = 2.5
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 19 CQNGGTCENTAP--DQYLCTCPEGFSGINCEVVDNPCMMGPCGNG--GQCKETAGQFQCV 74
C NGGTC + + + C CP+ F G +CE+ + G+ G+ C+
Sbjct: 3 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTCYEGNGHFYRGKASTDTMGRPCL 62
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 30.6 bits (68), Expect = 2.2
Identities = 51/397 (12%), Positives = 98/397 (24%), Gaps = 13/397 (3%)
Query: 317 DLVNDFHCACLPGYTGRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENG 376
++ + + C+ +PC N G C+C G G+ CE
Sbjct: 475 NIPCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPTLSGTECLCVCQSGTYGENCEKQ 534
Query: 377 GTCVNTGDLYSCICKEGFEGPDCGQD----INDCSPQPCYNGGKCVDGVNWFLCECAPGF 432
+ + +C+ GGK +G +C
Sbjct: 535 SPDYKSNAVDGQWGCWSSWSTCDATYKRSRTRECNNPAPQRGGKRCEGEKRQEEDCTFSI 594
Query: 433 AGPDCRININECASNPCGYGKEILTVQSRSRSPAYLCVSNPAYLVARCVSQSGGSFKCSC 492
+ + IN+ EI + N + + G + SC
Sbjct: 595 MENNGQPCINDDEEMKEVDLPEIEADSGCPQPV---PPENGFIRNEKQLYLVGEDVEISC 651
Query: 493 DAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCS 552
GF Q C + + + ++ + G S + +
Sbjct: 652 LTGFETVGYQYFRCLPDGTWRQGDVECQ-RTECIKPVVQEVLTITPFQRLYRIGESIELT 710
Query: 553 CDAGFSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECE-PNP 611
C GF + C+ N + G + +EC +P
Sbjct: 711 CPKGFV--VAGPSRYTCQGNSWTPPISNSLTCEKDTLTKLKGHCQLGQKQSGSECICMSP 768
Query: 612 CKNNGTCIDGHADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDW 671
++ + F + + C C H +
Sbjct: 769 EEDCSHHSEDLCVFDTDSNDYFTSPACKFLAEKCLNNQQLHFLHIGSCQDGRQLEWGLER 828
Query: 672 EGTSCHIGKLNACKSNPCKNGGTCVNTGDLYSCICKE 708
S + K +C + C + C + C+C
Sbjct: 829 TRLSSNSTKKESCGYDTCYDWEKC--SASTSKCVCLL 863
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 30.0 bits (67), Expect = 2.8
Identities = 8/59 (13%), Positives = 16/59 (27%), Gaps = 3/59 (5%)
Query: 557 FSGKYCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKNN 615
+ N + C + +QC C G + N C+ ++
Sbjct: 260 QQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVK---LLENGKTCKDGNSHHH 315
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 29.4 bits (67), Expect = 4.1
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 4/22 (18%)
Query: 692 GGTCVNTGDLYSCICKEGFVHA 713
GGTCVN G C+ K+ +A
Sbjct: 39 GGTCVNVG----CVPKKVMWYA 56
>3i08_A Neurogenic locus notch homolog protein 1; SEA domain, LIN-12 notch
repeat, LNR, heterodimerization domain, HD, activator,
ANK repeat, calcium; 3.20A {Homo sapiens}
Length = 220
Score = 28.7 bits (63), Expect = 5.1
Identities = 26/140 (18%), Positives = 42/140 (30%), Gaps = 24/140 (17%)
Query: 277 GCTNLVGDYRC-----NCSPGWTGHNCDVNINDCVGQCRHGSTCIDLVNDFHCACLPGYT 331
C G+ C N + GW G +C +N ND C C +D C
Sbjct: 9 ECQEDAGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFSD--GHCDSQCN 66
Query: 332 GRTCQTDINDCESSPCVNGGECVDQVNGFRCICPVGFAGQLCENGGTCVNTGDLYSCICK 391
C D DC+ + +C + + G C D +
Sbjct: 67 SAGCLFDGFDCQRAEG-------------QCNPLYDQYCKDHFSDGHC----DQGCNSAE 109
Query: 392 EGFEGPDCGQDINDCSPQPC 411
++G DC + + +
Sbjct: 110 CEWDGLDCAEHVPERLAAGT 129
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 29.1 bits (66), Expect = 5.2
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 4/22 (18%)
Query: 692 GGTCVNTGDLYSCICKEGFVHA 713
GGTCVN G C+ K+ +A
Sbjct: 37 GGTCVNVG----CVPKKIMFNA 54
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 29.0 bits (66), Expect = 5.7
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 4/22 (18%)
Query: 692 GGTCVNTGDLYSCICKEGFVHA 713
GGTCVN G C+ K+ HA
Sbjct: 39 GGTCVNVG----CVPKKVMWHA 56
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 29.0 bits (66), Expect = 5.8
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 4/22 (18%)
Query: 692 GGTCVNTGDLYSCICKEGFVHA 713
GGTCV G C+ K+ + +A
Sbjct: 61 GGTCVIRG----CVPKKLYFYA 78
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 29.0 bits (66), Expect = 6.0
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Query: 692 GGTCVNTGDLYSCICKEGFVHA 713
GGTCV G C+ K+ +V+A
Sbjct: 40 GGTCVIRG----CVPKKLYVYA 57
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 29.1 bits (66), Expect = 6.0
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 4/22 (18%)
Query: 692 GGTCVNTGDLYSCICKEGFVHA 713
GGTCVN G C+ K+ V
Sbjct: 52 GGTCVNVG----CVPKKLMVTG 69
>2b6b_D CD209 antigen; cryo EM dengue CRD DC-SIGN, icosahedral virus,
virus-recepto; 25.00A {Homo sapiens} SCOP: d.169.1.1
Length = 175
Score = 28.3 bits (63), Expect = 6.4
Identities = 8/41 (19%), Positives = 11/41 (26%), Gaps = 4/41 (9%)
Query: 616 GTCIDGHADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTC 656
G+ H + L G + C C G C
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMRLCHP----CPWEWTFFQGNC 38
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 29.1 bits (66), Expect = 6.5
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 4/22 (18%)
Query: 692 GGTCVNTGDLYSCICKEGFVHA 713
GGTCVN G C+ K+ V
Sbjct: 48 GGTCVNVG----CVPKKLMVTG 65
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 29.0 bits (66), Expect = 6.7
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 4/22 (18%)
Query: 692 GGTCVNTGDLYSCICKEGFVHA 713
GGTCVN G C+ K+ +
Sbjct: 55 GGTCVNVG----CVPKKVMWNT 72
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 29.0 bits (66), Expect = 6.8
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 4/22 (18%)
Query: 692 GGTCVNTGDLYSCICKEGFVHA 713
GGTCVN G C+ K+ +A
Sbjct: 46 GGTCVNVG----CVPKKVMWYA 63
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 29.1 bits (64), Expect = 6.8
Identities = 21/177 (11%), Positives = 45/177 (25%), Gaps = 5/177 (2%)
Query: 506 NDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSGKYCHEN 565
N+ + + I + + E C + K +C A E
Sbjct: 122 NNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVER 181
Query: 566 INDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANNKNECEPNPCKN---NGTCIDGH 622
H C + + +C C+ + + C+N +G C++
Sbjct: 182 CWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETC 241
Query: 623 ADFTCLCKNG--WKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCH 677
++ C + C + + CP + S +
Sbjct: 242 PPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSN 298
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain,
repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Length = 45
Score = 25.8 bits (56), Expect = 7.0
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 342 CESSPCVNGGEC--VDQVNGFRCICPVGFAGQLCEN 375
C+NGG ++ ++ + C C +G++G C+
Sbjct: 6 SYDGYCLNGGVXMHIESLDSYTCNCVIGYSGDRCQT 41
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 25.9 bits (57), Expect = 7.3
Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 11/50 (22%)
Query: 262 DADECQKSPCVNAALG-------CTNLVGDYRCNCSPGWT----GHNCDV 300
D DEC C N VG Y C+C PG+ H+C
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA 52
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 28.6 bits (63), Expect = 7.4
Identities = 34/214 (15%), Positives = 52/214 (24%), Gaps = 24/214 (11%)
Query: 500 YCHENINDCKHNPCQNGGTCVDKVNSFQCICRDGWEGEICANSNQSGGSFKCSCDAGFSG 559
N + P + G + +C + + C +
Sbjct: 132 DAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGK 191
Query: 560 KYCHENINDCKHNPCQNGGTCVDKVNSFQCI-CRDGWEGEICANNKNECEPNPCKNNGTC 618
+ C EN N+C H C C N C+ CR + +C C PN + G
Sbjct: 192 RACTEN-NECCHPECLGS--CSAPDNDTACVACRHYYYAGVC---VPACPPNTYRFEGWR 245
Query: 619 IDGHADFTCLCKNGWKGKTCTSKNGHCDRGTCKHGGTCADLGSSFFCHCPPDWEGTSCHI 678
C + S G H G C CP +
Sbjct: 246 ----------CVDRDFCANILSAESSDSEGFVIHDGEC-------MQECPSGFIRNGSQS 288
Query: 679 GKLNACKSNPCKNGGTCVNTGDLYSCICKEGFVH 712
C+ K T + S +
Sbjct: 289 MYCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQG 322
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 28.7 bits (65), Expect = 8.4
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 4/22 (18%)
Query: 692 GGTCVNTGDLYSCICKEGFVHA 713
GGTCVN G CI K+ A
Sbjct: 54 GGTCVNVG----CIPKKLMHQA 71
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS;
2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4
g.3.11.4
Length = 105
Score = 27.0 bits (59), Expect = 8.5
Identities = 13/70 (18%), Positives = 17/70 (24%), Gaps = 5/70 (7%)
Query: 19 CQNGGTCENTAPDQYLCTCPEGFS--GINCEVVDNPCMM--GPCGNGGQCKETA-GQFQC 73
C C GF G C C G C +C + +C
Sbjct: 18 VPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEAECTMDDKKEVEC 77
Query: 74 VCAPGWTGPT 83
C + P
Sbjct: 78 KCTKEGSEPL 87
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 28.3 bits (64), Expect = 9.5
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 4/22 (18%)
Query: 692 GGTCVNTGDLYSCICKEGFVHA 713
GGTCVN G CI K+ A
Sbjct: 50 GGTCVNVG----CIPKKLMHQA 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.513
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,504,321
Number of extensions: 749974
Number of successful extensions: 8290
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3526
Number of HSP's successfully gapped: 1608
Length of query: 721
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 621
Effective length of database: 3,909,693
Effective search space: 2427919353
Effective search space used: 2427919353
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.7 bits)