BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17085
(826 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FJM|A Chain A, Protein SerineTHREONINE PHOSPHATASE-1 (Alpha Isoform, Type
1) Complexed With Microcystin-Lr Toxin
pdb|1FJM|B Chain B, Protein SerineTHREONINE PHOSPHATASE-1 (Alpha Isoform, Type
1) Complexed With Microcystin-Lr Toxin
Length = 330
Score = 349 bits (896), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 165/236 (69%), Positives = 192/236 (81%), Gaps = 1/236 (0%)
Query: 1 MSQVDSLNLDSIINRLIDID-ARSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLK 59
MS + LNLDSII RL+++ +R G+NV L E+EI LC SREIFLS+P+LLEL PLK
Sbjct: 1 MSDSEKLNLDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLK 60
Query: 60 ICGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHL 119
ICGDIHGQY DLL LF+YG +PP+S YLFLGDYVDRG SLETICLLLAYKIKYP F L
Sbjct: 61 ICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFL 120
Query: 120 LRGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYL 179
LRGNHECA+IN++YGFYDECKRRYN+KLWKTFT+CFNC+P+AAIVDEKIFCCHGGLSP L
Sbjct: 121 LRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDL 180
Query: 180 SSIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYL 235
S++QIRRI RPT VP+QGLLCDLLWSDP+K + R V F ++ A +L
Sbjct: 181 QSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFL 236
>pdb|4G9J|A Chain A, Protein SerTHR PHOSPHATASE-1 In Complex With
Cell-Permeable Peptide
pdb|4G9J|B Chain B, Protein SerTHR PHOSPHATASE-1 In Complex With
Cell-Permeable Peptide
Length = 331
Score = 349 bits (895), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 165/236 (69%), Positives = 192/236 (81%), Gaps = 1/236 (0%)
Query: 1 MSQVDSLNLDSIINRLIDID-ARSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLK 59
MS + LNLDSII RL+++ +R G+NV L E+EI LC SREIFLS+P+LLEL PLK
Sbjct: 2 MSDSEKLNLDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLK 61
Query: 60 ICGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHL 119
ICGDIHGQY DLL LF+YG +PP+S YLFLGDYVDRG SLETICLLLAYKIKYP F L
Sbjct: 62 ICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFL 121
Query: 120 LRGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYL 179
LRGNHECA+IN++YGFYDECKRRYN+KLWKTFT+CFNC+P+AAIVDEKIFCCHGGLSP L
Sbjct: 122 LRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDL 181
Query: 180 SSIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYL 235
S++QIRRI RPT VP+QGLLCDLLWSDP+K + R V F ++ A +L
Sbjct: 182 QSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFL 237
>pdb|3N5U|A Chain A, Crystal Structure Of An Rb C-Terminal Peptide Bound To The
Catalytic Subunit Of Pp1
pdb|3N5U|B Chain B, Crystal Structure Of An Rb C-Terminal Peptide Bound To The
Catalytic Subunit Of Pp1
Length = 300
Score = 348 bits (894), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 165/236 (69%), Positives = 192/236 (81%), Gaps = 1/236 (0%)
Query: 1 MSQVDSLNLDSIINRLIDID-ARSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLK 59
MS + LNLDSII RL+++ +R G+NV L E+EI LC SREIFLS+P+LLEL PLK
Sbjct: 1 MSDSEKLNLDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLK 60
Query: 60 ICGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHL 119
ICGDIHGQY DLL LF+YG +PP+S YLFLGDYVDRG SLETICLLLAYKIKYP F L
Sbjct: 61 ICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFL 120
Query: 120 LRGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYL 179
LRGNHECA+IN++YGFYDECKRRYN+KLWKTFT+CFNC+P+AAIVDEKIFCCHGGLSP L
Sbjct: 121 LRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDL 180
Query: 180 SSIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYL 235
S++QIRRI RPT VP+QGLLCDLLWSDP+K + R V F ++ A +L
Sbjct: 181 QSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFL 236
>pdb|1JK7|A Chain A, Crystal Structure Of The Tumor-Promoter Okadaic Acid Bound
To Protein Phosphatase-1
pdb|1IT6|A Chain A, Crystal Structure Of The Complex Between Calyculin A And
The Catalytic Subunit Of Protein Phosphatase 1
pdb|1IT6|B Chain B, Crystal Structure Of The Complex Between Calyculin A And
The Catalytic Subunit Of Protein Phosphatase 1
pdb|2BCD|A Chain A, X-Ray Crystal Structure Of Protein Phosphatase-1 With The
Marine Toxin Motuporin Bound
pdb|2BDX|A Chain A, X-Ray Crystal Structure Of Dihydromicrocystin-La Bound To
Protein Phosphatase-1
Length = 323
Score = 348 bits (892), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 163/236 (69%), Positives = 192/236 (81%), Gaps = 1/236 (0%)
Query: 1 MSQVDSLNLDSIINRLIDI-DARSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLK 59
M+ +D LN+DSII RL+++ ++ G+NV L E+EI LC SREIFLS+P+LLEL PLK
Sbjct: 1 MADLDKLNIDSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLK 60
Query: 60 ICGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHL 119
ICGDIHGQY DLL LF+YG +PP+S YLFLGDYVDRG SLETICLLLAYKIKYP F L
Sbjct: 61 ICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFL 120
Query: 120 LRGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYL 179
LRGNHECA+IN++YGFYDECKRRYN+KLWKTFT+CFNC+P+AAIVDEKIFCCHGGLSP L
Sbjct: 121 LRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDL 180
Query: 180 SSIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYL 235
S++QIRRI RPT VP+QGLLCDLLWSDP+K R V F ++ A +L
Sbjct: 181 QSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVLGWGENDRGVSFTFGAEVVAKFL 236
>pdb|3EGG|A Chain A, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|B Chain B, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGH|A Chain A, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|B Chain B, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3HVQ|A Chain A, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|B Chain B, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 329
Score = 347 bits (891), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 164/235 (69%), Positives = 191/235 (81%), Gaps = 1/235 (0%)
Query: 2 SQVDSLNLDSIINRLIDID-ARSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKI 60
+ SLNLDSII RL+++ +R G+NV L E+EI LC SREIFLS+P+LLEL PLKI
Sbjct: 1 GHMGSLNLDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKI 60
Query: 61 CGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLL 120
CGDIHGQY DLL LF+YG +PP+S YLFLGDYVDRG SLETICLLLAYKIKYP F LL
Sbjct: 61 CGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLL 120
Query: 121 RGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLS 180
RGNHECA+IN++YGFYDECKRRYN+KLWKTFT+CFNC+P+AAIVDEKIFCCHGGLSP L
Sbjct: 121 RGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQ 180
Query: 181 SIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYL 235
S++QIRRI RPT VP+QGLLCDLLWSDP+K + R V F ++ A +L
Sbjct: 181 SMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFL 235
>pdb|3E7A|A Chain A, Crystal Structure Of Protein Phosphatase-1 Bound To The
Natural Toxin Nodularin-R
pdb|3E7A|B Chain B, Crystal Structure Of Protein Phosphatase-1 Bound To The
Natural Toxin Nodularin-R
pdb|3E7B|A Chain A, Crystal Structure Of Protein Phosphatase-1 Bound To The
Natural Toxin Inhibitor Tautomycin
pdb|3E7B|B Chain B, Crystal Structure Of Protein Phosphatase-1 Bound To The
Natural Toxin Inhibitor Tautomycin
Length = 299
Score = 347 bits (889), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 164/235 (69%), Positives = 191/235 (81%), Gaps = 1/235 (0%)
Query: 2 SQVDSLNLDSIINRLIDID-ARSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKI 60
+ SLNLDSII RL+++ +R G+NV L E+EI LC SREIFLS+P+LLEL PLKI
Sbjct: 1 GHMGSLNLDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKI 60
Query: 61 CGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLL 120
CGDIHGQY DLL LF+YG +PP+S YLFLGDYVDRG SLETICLLLAYKIKYP F LL
Sbjct: 61 CGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLL 120
Query: 121 RGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLS 180
RGNHECA+IN++YGFYDECKRRYN+KLWKTFT+CFNC+P+AAIVDEKIFCCHGGLSP L
Sbjct: 121 RGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQ 180
Query: 181 SIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYL 235
S++QIRRI RPT VP+QGLLCDLLWSDP+K + R V F ++ A +L
Sbjct: 181 SMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFL 235
>pdb|3V4Y|A Chain A, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
pdb|3V4Y|C Chain C, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
pdb|3V4Y|E Chain E, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
pdb|3V4Y|G Chain G, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
Length = 306
Score = 347 bits (889), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 164/235 (69%), Positives = 191/235 (81%), Gaps = 1/235 (0%)
Query: 2 SQVDSLNLDSIINRLIDID-ARSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKI 60
+ SLNLDSII RL+++ +R G+NV L E+EI LC SREIFLS+P+LLEL PLKI
Sbjct: 1 GHMGSLNLDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKI 60
Query: 61 CGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLL 120
CGDIHGQY DLL LF+YG +PP+S YLFLGDYVDRG SLETICLLLAYKIKYP F LL
Sbjct: 61 CGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLL 120
Query: 121 RGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLS 180
RGNHECA+IN++YGFYDECKRRYN+KLWKTFT+CFNC+P+AAIVDEKIFCCHGGLSP L
Sbjct: 121 RGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQ 180
Query: 181 SIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYL 235
S++QIRRI RPT VP+QGLLCDLLWSDP+K + R V F ++ A +L
Sbjct: 181 SMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFL 235
>pdb|2O8A|A Chain A, Rat Pp1cgamma Complexed With Mouse Inhibitor-2
pdb|2O8A|B Chain B, Rat Pp1cgamma Complexed With Mouse Inhibitor-2
pdb|2O8G|A Chain A, Rat Pp1c Gamma Complexed With Mouse Inhibitor-2
pdb|2O8G|B Chain B, Rat Pp1c Gamma Complexed With Mouse Inhibitor-2
Length = 329
Score = 346 bits (888), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 162/235 (68%), Positives = 191/235 (81%), Gaps = 1/235 (0%)
Query: 2 SQVDSLNLDSIINRLIDI-DARSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKI 60
+ +D LN+DSII RL+++ ++ G+NV L E+EI LC SREIFLS+P+LLEL PLKI
Sbjct: 8 ADIDKLNIDSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKI 67
Query: 61 CGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLL 120
CGDIHGQY DLL LF+YG +PP+S YLFLGDYVDRG SLETICLLLAYKIKYP F LL
Sbjct: 68 CGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLL 127
Query: 121 RGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLS 180
RGNHECA+IN++YGFYDECKRRYN+KLWKTFT+CFNC+P+AAIVDEKIFCCHGGLSP L
Sbjct: 128 RGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQ 187
Query: 181 SIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYL 235
S++QIRRI RPT VP+QGLLCDLLWSDP+K R V F ++ A +L
Sbjct: 188 SMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVLGWGENDRGVSFTFGAEVVAKFL 242
>pdb|1U32|A Chain A, Crystal Structure Of A Protein Phosphatase-1: Calcineurin
Hybrid Bound To Okadaic Acid
Length = 293
Score = 341 bits (875), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 161/230 (70%), Positives = 188/230 (81%), Gaps = 1/230 (0%)
Query: 7 LNLDSIINRLIDI-DARSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKICGDIH 65
LN+DSII RL+++ ++ G+NV L E+EI LC SREIFLS+P+LLEL PLKICGDIH
Sbjct: 2 LNIDSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIH 61
Query: 66 GQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHE 125
GQY DLL LF+YG +PP+S YLFLGDYVDRG SLETICLLLAYKIKYP F LLRGNHE
Sbjct: 62 GQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHE 121
Query: 126 CANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQI 185
CA+IN++YGFYDECKRRYN+KLWKTFT+CFNC+P+AAIVDEKIFCCHGGLSP L S++QI
Sbjct: 122 CASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQI 181
Query: 186 RRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYL 235
RRI RPT VP+QGLLCDLLWSDP+K R V F ++ A +L
Sbjct: 182 RRIMRPTDVPDQGLLCDLLWSDPDKDVLGWGENDRGVSFTFGAEVVAKFL 231
>pdb|1S70|A Chain A, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 330
Score = 333 bits (855), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 158/235 (67%), Positives = 187/235 (79%), Gaps = 5/235 (2%)
Query: 7 LNLDSIINRLIDI-DARSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKICGDIH 65
LN+DS+I RL+++ R G+ V + E+E+ LC SREIFLS+P+LLEL PLKICGDIH
Sbjct: 9 LNVDSLITRLLEVRGCRPGKIVQMTEAEVRGLCIKSREIFLSQPILLELEAPLKICGDIH 68
Query: 66 GQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHE 125
GQY DLL LF+YG +PP++ YLFLGDYVDRG SLETICLLLAYKIKYP F LLRGNHE
Sbjct: 69 GQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHE 128
Query: 126 CANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQI 185
CA+IN++YGFYDECKRR+N+KLWKTFT+CFNC+P+AAIVDEKIFCCHGGLSP L S++QI
Sbjct: 129 CASINRIYGFYDECKRRFNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQI 188
Query: 186 RRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYLSSQLN 240
RRI RPT VP+ GLLCDLLWSDP+K + R V F GA +S LN
Sbjct: 189 RRIMRPTDVPDTGLLCDLLWSDPDKDVQGWGENDRGVSF----TFGADVVSKFLN 239
>pdb|3P71|C Chain C, Crystal Structure Of The Complex Of Lcmt-1 And Pp2a
Length = 304
Score = 203 bits (517), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 91/182 (50%), Positives = 127/182 (69%), Gaps = 1/182 (0%)
Query: 29 LHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYPPKSRYLF 88
L ES++ +LC ++EI E + E+ P+ +CGD+HGQ+ DL+ LF G P + YLF
Sbjct: 23 LSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLF 82
Query: 89 LGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRY-NVKL 147
+GDYVDRG S+ET+ LL+A K++Y +LRGNHE I +VYGFYDEC R+Y N +
Sbjct: 83 MGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANV 142
Query: 148 WKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSD 207
WK FT+ F+ +P+ A+VD +IFC HGGLSP + ++D IR + R VP +G +CDLLWSD
Sbjct: 143 WKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSD 202
Query: 208 PE 209
P+
Sbjct: 203 PD 204
>pdb|2NYL|C Chain C, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|F Chain F, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|C Chain C, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|F Chain F, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 293
Score = 203 bits (517), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 91/182 (50%), Positives = 127/182 (69%), Gaps = 1/182 (0%)
Query: 29 LHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYPPKSRYLF 88
L ES++ +LC ++EI E + E+ P+ +CGD+HGQ+ DL+ LF G P + YLF
Sbjct: 22 LSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLF 81
Query: 89 LGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRY-NVKL 147
+GDYVDRG S+ET+ LL+A K++Y +LRGNHE I +VYGFYDEC R+Y N +
Sbjct: 82 MGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANV 141
Query: 148 WKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSD 207
WK FT+ F+ +P+ A+VD +IFC HGGLSP + ++D IR + R VP +G +CDLLWSD
Sbjct: 142 WKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSD 201
Query: 208 PE 209
P+
Sbjct: 202 PD 203
>pdb|3C5W|C Chain C, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 203 bits (516), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 91/182 (50%), Positives = 127/182 (69%), Gaps = 1/182 (0%)
Query: 29 LHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYPPKSRYLF 88
L ES++ +LC ++EI E + E+ P+ +CGD+HGQ+ DL+ LF G P + YLF
Sbjct: 24 LSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLF 83
Query: 89 LGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRY-NVKL 147
+GDYVDRG S+ET+ LL+A K++Y +LRGNHE I +VYGFYDEC R+Y N +
Sbjct: 84 MGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANV 143
Query: 148 WKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSD 207
WK FT+ F+ +P+ A+VD +IFC HGGLSP + ++D IR + R VP +G +CDLLWSD
Sbjct: 144 WKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSD 203
Query: 208 PE 209
P+
Sbjct: 204 PD 205
>pdb|2IE4|C Chain C, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|C Chain C, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|F Chain F, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3DW8|C Chain C, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|F Chain F, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3K7V|C Chain C, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|C Chain C, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 309
Score = 203 bits (516), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 91/182 (50%), Positives = 127/182 (69%), Gaps = 1/182 (0%)
Query: 29 LHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYPPKSRYLF 88
L ES++ +LC ++EI E + E+ P+ +CGD+HGQ+ DL+ LF G P + YLF
Sbjct: 23 LSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLF 82
Query: 89 LGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRY-NVKL 147
+GDYVDRG S+ET+ LL+A K++Y +LRGNHE I +VYGFYDEC R+Y N +
Sbjct: 83 MGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANV 142
Query: 148 WKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSD 207
WK FT+ F+ +P+ A+VD +IFC HGGLSP + ++D IR + R VP +G +CDLLWSD
Sbjct: 143 WKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSD 202
Query: 208 PE 209
P+
Sbjct: 203 PD 204
>pdb|2IE3|C Chain C, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
Length = 309
Score = 203 bits (516), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 91/182 (50%), Positives = 127/182 (69%), Gaps = 1/182 (0%)
Query: 29 LHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYPPKSRYLF 88
L ES++ +LC ++EI E + E+ P+ +CGD+HGQ+ DL+ LF G P + YLF
Sbjct: 23 LSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLF 82
Query: 89 LGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRY-NVKL 147
+GDYVDRG S+ET+ LL+A K++Y +LRGNHE I +VYGFYDEC R+Y N +
Sbjct: 83 MGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANV 142
Query: 148 WKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSD 207
WK FT+ F+ +P+ A+VD +IFC HGGLSP + ++D IR + R VP +G +CDLLWSD
Sbjct: 143 WKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSD 202
Query: 208 PE 209
P+
Sbjct: 203 PD 204
>pdb|2IAE|C Chain C, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|F Chain F, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme
Length = 309
Score = 201 bits (511), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 90/182 (49%), Positives = 127/182 (69%), Gaps = 1/182 (0%)
Query: 29 LHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYPPKSRYLF 88
L ES++ +LC ++EI E + E+ P+ +CGD+HGQ+ DL+ LF G P + YLF
Sbjct: 23 LSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLF 82
Query: 89 LGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRY-NVKL 147
+GDYV+RG S+ET+ LL+A K++Y +LRGNHE I +VYGFYDEC R+Y N +
Sbjct: 83 MGDYVNRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANV 142
Query: 148 WKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSD 207
WK FT+ F+ +P+ A+VD +IFC HGGLSP + ++D IR + R VP +G +CDLLWSD
Sbjct: 143 WKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSD 202
Query: 208 PE 209
P+
Sbjct: 203 PD 204
>pdb|3FGA|C Chain C, Structural Basis Of Pp2a And Sgo Interaction
Length = 309
Score = 201 bits (511), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 90/182 (49%), Positives = 127/182 (69%), Gaps = 1/182 (0%)
Query: 29 LHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYPPKSRYLF 88
L ES++ +LC ++EI E + E+ P+ +CGD+HGQ+ DL+ LF G P + YLF
Sbjct: 23 LSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLF 82
Query: 89 LGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRY-NVKL 147
+GDYV+RG S+ET+ LL+A K++Y +LRGNHE I +VYGFYDEC R+Y N +
Sbjct: 83 MGDYVNRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANV 142
Query: 148 WKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSD 207
WK FT+ F+ +P+ A+VD +IFC HGGLSP + ++D IR + R VP +G +CDLLWSD
Sbjct: 143 WKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSD 202
Query: 208 PE 209
P+
Sbjct: 203 PD 204
>pdb|1AUI|A Chain A, Human Calcineurin Heterodimer
Length = 521
Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 95/253 (37%), Positives = 141/253 (55%), Gaps = 12/253 (4%)
Query: 29 LHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYPPKSRYLF 88
L ES + I E LL++ P+ +CGDIHGQ+ DL+ LF+ G P +RYLF
Sbjct: 56 LEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGSPANTRYLF 115
Query: 89 LGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRYNVKLW 148
LGDYVDRG S+E + L A KI YP LLRGNHEC ++ + + F ECK +Y+ +++
Sbjct: 116 LGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVY 175
Query: 149 KTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDP 208
+ F+C+P+AA+++++ C HGGLSP ++++D IR++ R P G +CD+LWSDP
Sbjct: 176 DACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIRKLDRFKEPPAYGPMCDILWSDP 235
Query: 209 EKAAESQLTIVRQVRFHAEVKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIK---SDIA 265
+ ++ T Q F G Y S YP FL + ++ + A
Sbjct: 236 LEDFGNEKT---QEHFTHNTVRGCSYFYS------YPAVCEFLQHNNLLSILRAHEAQDA 286
Query: 266 LLKLGRKVQFTNF 278
++ RK Q T F
Sbjct: 287 GYRMYRKSQTTGF 299
>pdb|2P6B|A Chain A, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
pdb|2P6B|C Chain C, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
Length = 383
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 144/260 (55%), Gaps = 15/260 (5%)
Query: 22 RSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYP 81
+ GR L ES + I E LL++ P+ +CGDIHGQ+ DL+ LF+ G P
Sbjct: 55 KEGR---LEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGSP 111
Query: 82 PKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKR 141
+RYLFLGDYVDRG S+E + L A KI YP LLRGNHEC ++ + + F ECK
Sbjct: 112 ANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKI 171
Query: 142 RYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLC 201
+Y+ +++ + F+C+P+AA+++++ C HGGLSP ++++D IR++ R P G +C
Sbjct: 172 KYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIRKLDRFKEPPAYGPMC 231
Query: 202 DLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIK 261
D+LWSDP + ++ T Q F G Y S YP FL + ++
Sbjct: 232 DILWSDPLEDFGNEKT---QEHFTHNTVRGCSYFYS------YPAVCEFLQHNNLLSILR 282
Query: 262 SDIAL---LKLGRKVQFTNF 278
+ A ++ RK Q T F
Sbjct: 283 AHEAQDAGYRMYRKSQTTGF 302
>pdb|3LL8|A Chain A, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
pdb|3LL8|C Chain C, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
Length = 357
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 144/260 (55%), Gaps = 15/260 (5%)
Query: 22 RSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYP 81
+ GR L ES + I E LL++ P+ +CGDIHGQ+ DL+ LF+ G P
Sbjct: 39 KEGR---LEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGSP 95
Query: 82 PKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKR 141
+RYLFLGDYVDRG S+E + L A KI YP LLRGNHEC ++ + + F ECK
Sbjct: 96 ANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKI 155
Query: 142 RYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLC 201
+Y+ +++ + F+C+P+AA+++++ C HGGLSP ++++D IR++ R P G +C
Sbjct: 156 KYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIRKLDRFKEPPAYGPMC 215
Query: 202 DLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIK 261
D+LWSDP + ++ T Q F G Y S YP FL + ++
Sbjct: 216 DILWSDPLEDFGNEKT---QEHFTHNTVRGCSYFYS------YPAVCEFLQHNNLLSILR 266
Query: 262 SDIAL---LKLGRKVQFTNF 278
+ A ++ RK Q T F
Sbjct: 267 AHEAQDAGYRMYRKSQTTGF 286
>pdb|1M63|A Chain A, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|E Chain E, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
Length = 372
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 144/260 (55%), Gaps = 15/260 (5%)
Query: 22 RSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYP 81
+ GR L ES + I E LL++ P+ +CGDIHGQ+ DL+ LF+ G P
Sbjct: 52 KEGR---LEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGSP 108
Query: 82 PKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKR 141
+RYLFLGDYVDRG S+E + L A KI YP LLRGNHEC ++ + + F ECK
Sbjct: 109 ANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKI 168
Query: 142 RYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLC 201
+Y+ +++ + F+C+P+AA+++++ C HGGLSP ++++D IR++ R P G +C
Sbjct: 169 KYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIRKLDRFKEPPAYGPMC 228
Query: 202 DLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIK 261
D+LWSDP + ++ T Q F G Y S YP FL + ++
Sbjct: 229 DILWSDPLEDFGNEKT---QEHFTHNTVRGCSYFYS------YPAVCEFLQHNNLLSILR 279
Query: 262 SDIAL---LKLGRKVQFTNF 278
+ A ++ RK Q T F
Sbjct: 280 AHEAQDAGYRMYRKSQTTGF 299
>pdb|1TCO|A Chain A, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 375
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/238 (38%), Positives = 137/238 (57%), Gaps = 12/238 (5%)
Query: 44 IFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETI 103
I E LL++ P+ +CGDIHGQ+ DL+ LF+ G P +RYLFLGDYVDRG S+E +
Sbjct: 54 ILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECV 113
Query: 104 CLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAI 163
L A KI YP LLRGNHEC ++ + + F ECK +Y+ +++ + F+C+P+AA+
Sbjct: 114 LYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAAL 173
Query: 164 VDEKIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVR 223
++++ C HGGLSP ++++D IR++ R P G +CD+LWSDP + ++ T Q
Sbjct: 174 MNQQFLCVHGGLSPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKT---QEH 230
Query: 224 FHAEVKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKSDIAL---LKLGRKVQFTNF 278
F G Y S YP FL + +++ A ++ RK Q T F
Sbjct: 231 FTHNTVRGCSYFYS------YPAVCEFLQHNNLLSILRAHEAQDAGYRMYRKSQTTGF 282
>pdb|1MF8|A Chain A, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 373
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 144/260 (55%), Gaps = 15/260 (5%)
Query: 22 RSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYP 81
+ GR L ES + I E LL++ P+ +CGDIHGQ+ DL+ LF+ G P
Sbjct: 33 KEGR---LEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGSP 89
Query: 82 PKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKR 141
+RYLFLGDYVDRG S+E + L A KI YP LLRGNHEC ++ + + F ECK
Sbjct: 90 ANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKI 149
Query: 142 RYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLC 201
+Y+ +++ + F+C+P+AA+++++ C HGGLSP ++++D IR++ R P G +C
Sbjct: 150 KYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIRKLDRFKEPPAYGPMC 209
Query: 202 DLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIK 261
D+LWSDP + ++ T Q F G Y S YP FL + ++
Sbjct: 210 DILWSDPLEDFGNEKT---QEHFTHNTVRGCSYFYS------YPAVCEFLQHNNLLSILR 260
Query: 262 SDIAL---LKLGRKVQFTNF 278
+ A ++ RK Q T F
Sbjct: 261 AHEAQDAGYRMYRKSQTTGF 280
>pdb|2JOG|A Chain A, Structure Of The Calcineurin-Nfat Complex
Length = 327
Score = 177 bits (448), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 144/260 (55%), Gaps = 15/260 (5%)
Query: 22 RSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYP 81
+ GR L ES + I E LL++ P+ +CGDIHGQ+ DL+ LF+ G P
Sbjct: 32 KEGR---LEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGSP 88
Query: 82 PKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKR 141
+RYLFLGDYVDRG S+E + L A KI YP LLRGNHEC ++ + + F ECK
Sbjct: 89 ANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKI 148
Query: 142 RYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLC 201
+Y+ +++ + F+C+P+AA+++++ C HGGLSP ++++D IR++ R P G +C
Sbjct: 149 KYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIRKLDRFKEPPAYGPMC 208
Query: 202 DLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIK 261
D+LWSDP + ++ T Q F G Y S YP FL + ++
Sbjct: 209 DILWSDPLEDFGNEKT---QEHFTHNTVRGCSYFYS------YPAVCEFLQHNNLLSILR 259
Query: 262 SDIAL---LKLGRKVQFTNF 278
+ A ++ RK Q T F
Sbjct: 260 AHEAQDAGYRMYRKSQTTGF 279
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 155 bits (393), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 2/154 (1%)
Query: 58 LKICGDIHGQYLDLLMLFDYGKYPPKSR-YLFLGDYVDRGSNSLETICLLLAYKIKYPGM 116
+ +CGD HGQ+ DLL +F+ P ++ Y+F GD+VDRGS S+E I L +K+ YP
Sbjct: 215 ITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDH 274
Query: 117 FHLLRGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGL- 175
FHLLRGNHE N+N++YGF E K +Y ++++ F+E F +P+A ++ K+ HGGL
Sbjct: 275 FHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLF 334
Query: 176 SPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPE 209
S ++D IR+I R + P+ G +CDLLWSDP+
Sbjct: 335 SEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQ 368
>pdb|1S95|A Chain A, Structure Of SerineTHREONINE PROTEIN PHOSPHATASE 5
pdb|1S95|B Chain B, Structure Of SerineTHREONINE PROTEIN PHOSPHATASE 5
Length = 333
Score = 155 bits (392), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 2/154 (1%)
Query: 58 LKICGDIHGQYLDLLMLFDYGKYPPKSR-YLFLGDYVDRGSNSLETICLLLAYKIKYPGM 116
+ +CGD HGQ+ DLL +F+ P ++ Y+F GD+VDRGS S+E I L +K+ YP
Sbjct: 71 ITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDH 130
Query: 117 FHLLRGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGL- 175
FHLLRGNHE N+N++YGF E K +Y ++++ F+E F +P+A ++ K+ HGGL
Sbjct: 131 FHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLF 190
Query: 176 SPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPE 209
S ++D IR+I R + P+ G +CDLLWSDP+
Sbjct: 191 SEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQ 224
>pdb|3H60|A Chain A, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c)with Two Mn2+ Atoms
pdb|3H60|B Chain B, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c)with Two Mn2+ Atoms
pdb|3H61|A Chain A, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Mn2+ Atoms Originally Soaked With
Norcantharidin (Which Is Present In The Structure In The
Hydrolyzed Form)
pdb|3H61|D Chain D, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Mn2+ Atoms Originally Soaked With
Norcantharidin (Which Is Present In The Structure In The
Hydrolyzed Form)
pdb|3H62|C Chain C, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Mn2+ Atoms Complexed With Cantharidic
Acid
pdb|3H62|B Chain B, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Mn2+ Atoms Complexed With Cantharidic
Acid
pdb|3H63|A Chain A, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Mn2+ Atoms Originally Soaked With
Cantharidin (Which Is Present In The Structure In The
Hydrolyzed Form)
pdb|3H63|C Chain C, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Mn2+ Atoms Originally Soaked With
Cantharidin (Which Is Present In The Structure In The
Hydrolyzed Form)
pdb|3H64|A Chain A, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Mn2+ Atoms Complexed With Endothall
pdb|3H64|D Chain D, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Mn2+ Atoms Complexed With Endothall
pdb|3H66|A Chain A, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Zn2+ Atoms
pdb|3H66|B Chain B, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Zn2+ Atoms
pdb|3H67|A Chain A, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c)with Two Zn2+ Atoms Complexed With Cantharidic
Acid
pdb|3H67|D Chain D, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c)with Two Zn2+ Atoms Complexed With Cantharidic
Acid
pdb|3H68|A Chain A, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c)with Two Zn2+ Atoms Originally Soaked With
Cantharidin (Which Is Present In The Structure In The
Hydrolyzed Form)
pdb|3H68|D Chain D, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c)with Two Zn2+ Atoms Originally Soaked With
Cantharidin (Which Is Present In The Structure In The
Hydrolyzed Form)
pdb|3H69|A Chain A, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Zn2+ Atoms Complexed With Endothall
pdb|3H69|D Chain D, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Zn2+ Atoms Complexed With Endothall
Length = 315
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 2/154 (1%)
Query: 58 LKICGDIHGQYLDLLMLFDYGKYPPKSR-YLFLGDYVDRGSNSLETICLLLAYKIKYPGM 116
+ +CGD HGQ+ DLL +F+ P ++ Y+F GD+VDRGS S+E I L +K+ YP
Sbjct: 62 ITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDH 121
Query: 117 FHLLRGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGL- 175
FHLLRGNHE N+N++YGF E K +Y ++++ F+E F +P+A ++ K+ HGGL
Sbjct: 122 FHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLF 181
Query: 176 SPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPE 209
S ++D IR+I R + P+ G +CDLLWSDP+
Sbjct: 182 SEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQ 215
>pdb|3ICF|A Chain A, Structure Of Protein SerineTHREONINE PHOSPHATASE FROM
SACCHAROMYCES Cerevisiae With Similarity To Human
Phosphatase Pp5
pdb|3ICF|B Chain B, Structure Of Protein SerineTHREONINE PHOSPHATASE FROM
SACCHAROMYCES Cerevisiae With Similarity To Human
Phosphatase Pp5
Length = 335
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 109/189 (57%), Gaps = 14/189 (7%)
Query: 34 ISALCRVSREIFLSEPMLLEL---GTP---LKICGDIHGQYLDLLMLF-DYGKYPPKSRY 86
++A+ + +F EP +EL TP + +CGD HGQ+ D+L LF +GK PK Y
Sbjct: 36 VAAIISHADTLFRQEPSXVELENNSTPDVKISVCGDTHGQFYDVLNLFRKFGKVGPKHTY 95
Query: 87 LFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRYNVK 146
LF GD+VDRGS S E L KI +P F L RGNHE N NK+YGF DECK +Y+ +
Sbjct: 96 LFNGDFVDRGSWSCEVALLFYCLKILHPNNFFLNRGNHESDNXNKIYGFEDECKYKYSQR 155
Query: 147 LWKTFTECFNCMPVAAIVDEKIFCCHGGL----SPYLSSIDQIRRISRPTRVPEQGLLCD 202
++ F + F +P+A +++ HGGL S LS I R ++P P G +
Sbjct: 156 IFNXFAQSFESLPLATLINNDYLVXHGGLPSDPSATLSDFKNIDRFAQP---PRDGAFXE 212
Query: 203 LLWSDPEKA 211
LLW+DP++A
Sbjct: 213 LLWADPQEA 221
>pdb|2XXL|A Chain A, Crystal Structure Of Drosophila Grass Clip Serine Protease
Of Toll Pathway
pdb|2XXL|B Chain B, Crystal Structure Of Drosophila Grass Clip Serine Protease
Of Toll Pathway
Length = 408
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 50/94 (53%), Gaps = 16/94 (17%)
Query: 227 EVKLGAHYLSSQLN--------NAVYPV-----EKTFLHEKYDKAEIKSDIALLKLGRKV 273
E++LG H +S++ + PV EK +HEKYD I DIALLKL R V
Sbjct: 174 EIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLKLNRSV 233
Query: 274 QFTNFIQPICLPIKQYWQHDFAQAIAT--VAGWG 305
F I+PICLPI + A+ I+T V GWG
Sbjct: 234 PFQKHIKPICLPITDELKEK-AEQISTYFVTGWG 266
>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In
Complex With A Calcium Ion.
pdb|3GYM|A Chain A, Structure Of Prostasin In Complex With Aprotinin
pdb|3GYM|B Chain B, Structure Of Prostasin In Complex With Aprotinin
Length = 261
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 227 EVKLGAHYLSSQLNNA-VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
EVKLGAH L S +A V ++ H Y + + DIALL+L R + F+ +I+PI LP
Sbjct: 53 EVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLP 112
Query: 286 IKQYWQHDFAQAI-ATVAGWGYYTYTTAISNAK 317
Q F + TV GWG+ + ++ K
Sbjct: 113 AA---QASFPNGLHCTVTGWGHVAPSVSLLTPK 142
>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A
Covalent Benzoxazole Inhibitor
pdb|3E16|B Chain B, X-Ray Structure Of Human Prostasin In Complex With
Benzoxazole Warhead Peptidomimic, Lysine In P3
pdb|3E1X|B Chain B, The Crystal Structure Of Apo Prostasin At 1.7 Angstroms
Resolution
pdb|3FVF|B Chain B, The Crystal Structure Of Prostasin Complexed With Camostat
At 1.6 Angstroms Resolution
pdb|3E0N|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With
Dffr- Chloromethyl Ketone Inhibitor
Length = 271
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 227 EVKLGAHYLSSQLNNA-VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
EVKLGAH L S +A V ++ H Y + + DIALL+L R + F+ +I+PI LP
Sbjct: 53 EVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLP 112
Query: 286 IKQYWQHDFAQAI-ATVAGWGYYTYTTAISNAK 317
Q F + TV GWG+ + ++ K
Sbjct: 113 AA---QASFPNGLHCTVTGWGHVAPSVSLLTPK 142
>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin
pdb|3DFL|A Chain A, Crystal Structure Of Human Prostasin Complexed To 4-
Guanidinobenzoic Acid
Length = 263
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 227 EVKLGAHYLSSQLNNA-VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
EVKLGAH L S +A V ++ H Y + + DIALL+L R + F+ +I+PI LP
Sbjct: 53 EVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLP 112
Query: 286 IKQYWQHDFAQAI-ATVAGWGYYTYTTAISNAK 317
F + TV GWG+ + ++ K
Sbjct: 113 AA---NASFPNGLHCTVTGWGHVAPSVSLLTPK 142
>pdb|4GAW|A Chain A, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|B Chain B, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|C Chain C, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|D Chain D, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|E Chain E, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|F Chain F, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|G Chain G, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|H Chain H, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|I Chain I, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|J Chain J, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|K Chain K, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|L Chain L, Crystal Structure Of Active Human Granzyme H
Length = 226
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 9/131 (6%)
Query: 228 VKLGAHYLSSQLNNAVY-PVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V LGAH + Q + PV++ H Y+ +DI LL+L RK ++T ++P+ LP
Sbjct: 52 VTLGAHNIKEQERTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKWTTAVRPLRLPS 111
Query: 287 KQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKFPGMSLQILQWFVDSYHSIHLENYA 346
+ Q Q + +VAGWGY + +T + + L Q + F +Y + A
Sbjct: 112 SKA-QVKPGQ-LCSVAGWGYVSMSTLATTLQEVLLTVQKDCQCERLFHGNY------SRA 163
Query: 347 TEAAISNANNT 357
TE + + T
Sbjct: 164 TEICVGDPKKT 174
>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotinm84r
pdb|1XX9|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotinm84r
Length = 238
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 240 NNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIA 299
+ + + V++ +H++Y AE DIALLKL V +T+ +PICLP K +
Sbjct: 70 DTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKG--DRNVIYTDC 127
Query: 300 TVAGWGYYTYTTAISNAKNTLKFP 323
V GWGY I N K P
Sbjct: 128 WVTGWGYRKLRDKIQNTLQKAKIP 151
>pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotrypsin Complexed To
Pmsf
pdb|1EQ9|B Chain B, Crystal Structure Of Fire Ant Chymotrypsin Complexed To
Pmsf
Length = 222
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 8/147 (5%)
Query: 227 EVKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
+V +G +YLS + VY VE +++ YD +++D+AL+ L ++F + +QPI L
Sbjct: 53 KVHVGTNYLSESGD--VYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLST 110
Query: 287 KQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKF---PGMSLQILQWFVDSYHSIHLE 343
D T+ GWG NA ++ P + QW V H L
Sbjct: 111 N---DEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQWRVIDSHICTLT 167
Query: 344 NYATEAAISNANNTLKFPGMSLQILQW 370
A ++ L G + I+ +
Sbjct: 168 KRGEGACHGDSGGPLVANGAQIGIVSF 194
>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human
Plasma Coagulation Factor Xi Zymogen
Length = 625
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 240 NNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIA 299
+ + + V++ +H++Y AE DIALLKL V +T+ +PICLP K +
Sbjct: 457 DTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKG--DRNVIYTDC 514
Query: 300 TVAGWGYYTYTTAISNAKNTLKFP 323
V GWGY I N K P
Sbjct: 515 WVTGWGYRKLRDKIQNTLQKAKIP 538
>pdb|3EDX|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3EDX|D Chain D, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3EDX|F Chain F, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3HK3|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(ONE Molecule In The Asymmetric Unit)
pdb|3HK6|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(TWO Molecules In The Asymmetric Unit)
pdb|3HK6|D Chain D, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(TWO Molecules In The Asymmetric Unit)
pdb|3HKI|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215a/e217a In
Complex With The Extracellular Fragment Of Human Par1
pdb|3HKI|E Chain E, Crystal Structure Of Murine Thrombin Mutant W215a/e217a In
Complex With The Extracellular Fragment Of Human Par1
Length = 258
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 6/93 (6%)
Query: 228 VKLGAHYLSSQLNNA--VYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIALLKL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCL 120
Query: 285 PIKQYWQHDF-AQAIATVAGWGYY--TYTTAIS 314
P KQ A V GWG T+TT I+
Sbjct: 121 PDKQTVTSLLRAGYKGRVTGWGNLRETWTTNIN 153
>pdb|2OCV|B Chain B, Structural Basis Of Na+ Activation Mimicry In Murine
Thrombin
Length = 259
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 6/93 (6%)
Query: 228 VKLGAHYLSSQLNNA--VYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIALLKL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCL 120
Query: 285 PIKQYWQHDF-AQAIATVAGWGYY--TYTTAIS 314
P KQ A V GWG T+TT I+
Sbjct: 121 PDKQTVTSLLRAGYKGRVTGWGNLRETWTTNIN 153
>pdb|2PUX|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The
Extracellular Fragment Of Murine Par3
pdb|2PV9|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The
Extracellular Fragment Of Murine Par4
Length = 258
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 6/93 (6%)
Query: 228 VKLGAHYLSSQLNNA--VYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIALLKL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCL 120
Query: 285 PIKQYWQHDF-AQAIATVAGWGYY--TYTTAIS 314
P KQ A V GWG T+TT I+
Sbjct: 121 PDKQTVTSLLRAGYKGRVTGWGNLRETWTTNIN 153
>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine (S434a-T475a-K505
Mutant)
Length = 238
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 240 NNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIA 299
+ + + V++ +H++Y AE DIALLKL V + + +PICLP K +
Sbjct: 70 DTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKG--DRNVIYTDC 127
Query: 300 TVAGWGYYTYTTAISNAKNTLKFP 323
V GWGY I N K P
Sbjct: 128 WVTGWGYRALRDKIQNTLQKAKIP 151
>pdb|3TJU|A Chain A, Crystal Structure Of Human Granzyme H With An Inhibitor
pdb|3TJV|A Chain A, Crystal Structure Of Human Granzyme H With A Peptidyl
Substrate
pdb|3TK9|A Chain A, Crystal Structure Of Human Granzyme H
Length = 226
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 9/131 (6%)
Query: 228 VKLGAHYLSSQLNNAVY-PVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V LGAH + Q + PV++ H Y+ ++I LL+L RK ++T ++P+ LP
Sbjct: 52 VTLGAHNIKEQERTQQFIPVKRPIPHPAYNPKNFSNNIMLLQLERKAKWTTAVRPLRLPS 111
Query: 287 KQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKFPGMSLQILQWFVDSYHSIHLENYA 346
+ Q Q + +VAGWGY + +T + + L Q + F +Y + A
Sbjct: 112 SKA-QVKPGQ-LCSVAGWGYVSMSTLATTLQEVLLTVQKDCQCERLFHGNY------SRA 163
Query: 347 TEAAISNANNT 357
TE + + T
Sbjct: 164 TEICVGDPKKT 174
>pdb|1BBR|K Chain K, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1BBR|N Chain N, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1ETR|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1ETS|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1ETT|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1HRT|H Chain H, The Structure Of A Complex Of Bovine Alpha-Thrombin And
Recombinant Hirudin At 2.8 Angstroms Resolution
pdb|1TBR|H Chain H, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBR|K Chain K, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBQ|H Chain H, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBQ|K Chain K, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1UCY|K Chain K, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1UCY|N Chain N, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|H Chain H, Thrombin:hirudin 51-65 Complex
pdb|1MKW|H Chain H, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1MKX|H Chain H, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1TOC|B Chain B, Structure Of Serine Proteinase
pdb|1TOC|D Chain D, Structure Of Serine Proteinase
pdb|1TOC|F Chain F, Structure Of Serine Proteinase
pdb|1TOC|H Chain H, Structure Of Serine Proteinase
pdb|1UVT|H Chain H, Bovine Thrombin--Bm14.1248 Complex
pdb|1UVU|H Chain H, Bovine Thrombin--Bm12.1700 Complex
pdb|1YCP|H Chain H, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
pdb|1A0H|B Chain B, The X-Ray Crystal Structure Of Ppack-Meizothrombin Desf1:
KringleTHROMBIN AND CARBOHYDRATEKRINGLETHROMBIN
INTERACTIONS AND Location Of The Linker Chain
pdb|1A0H|E Chain E, The X-Ray Crystal Structure Of Ppack-Meizothrombin Desf1:
KringleTHROMBIN AND CARBOHYDRATEKRINGLETHROMBIN
INTERACTIONS AND Location Of The Linker Chain
pdb|1AVG|H Chain H, Thrombin Inhibitor From Triatoma Pallidipennis
pdb|2A1D|B Chain B, Staphylocoagulase Bound To Bovine Thrombin
pdb|2A1D|F Chain F, Staphylocoagulase Bound To Bovine Thrombin
pdb|2ODY|B Chain B, Thrombin-bound Boophilin Displays A Functional And
Accessible Reactive-site Loop
pdb|2ODY|D Chain D, Thrombin-bound Boophilin Displays A Functional And
Accessible Reactive-site Loop
pdb|3PMA|B Chain B, 2.2 Angstrom Crystal Structure Of The Complex Between
Bovine Thrombin And Sucrose Octasulfate
pdb|3PMA|D Chain D, 2.2 Angstrom Crystal Structure Of The Complex Between
Bovine Thrombin And Sucrose Octasulfate
pdb|3PMB|B Chain B, 2.9 Angstrom Crystal Structure Of Bovine Thrombin In
Tetragonal Spacegroup
pdb|3PMB|D Chain D, 2.9 Angstrom Crystal Structure Of Bovine Thrombin In
Tetragonal Spacegroup
Length = 259
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 246 VEKTFLHEKYD-KAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAI-ATVAG 303
++K ++H +Y+ K + DIALLKL R ++ +++I P+CLP KQ V G
Sbjct: 81 LDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTG 140
Query: 304 WG--YYTYTTAISNAKNTL 320
WG T+TT+++ + ++
Sbjct: 141 WGNRRETWTTSVAEVQPSV 159
>pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Complex With Protease
Inhibitor Ecotin
Length = 256
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 246 VEKTFLHEKYD-KAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAI-ATVAG 303
++K ++H +Y+ K + DIALLKL R ++ +++I P+CLP KQ V G
Sbjct: 81 LDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTG 140
Query: 304 WG--YYTYTTAISNAKNTL 320
WG T+TT+++ + ++
Sbjct: 141 WGNRRETWTTSVAEVQPSV 159
>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1MKX|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
Length = 308
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 246 VEKTFLHEKYD-KAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAI-ATVAG 303
++K ++H +Y+ K + DIALLKL R ++ +++I P+CLP KQ V G
Sbjct: 130 LDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTG 189
Query: 304 WG--YYTYTTAISNAKNTL 320
WG T+TT+++ + ++
Sbjct: 190 WGNRRETWTTSVAEVQPSV 208
>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Mutated Ecotin
pdb|1XXD|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Mutated Ecotin
pdb|1XXF|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotin Mutant (Ecotinp)
pdb|1XXF|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotin Mutant (Ecotinp)
Length = 238
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 240 NNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIA 299
+ + + V++ +H++Y AE DIALLKL V + + +PICLP K +
Sbjct: 70 DTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKG--DRNVIYTDC 127
Query: 300 TVAGWGYYTYTTAISNAKNTLKFP 323
V GWGY I N K P
Sbjct: 128 WVTGWGYRKLRDKIQNTLQKAKIP 151
>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Coagulation Factor Xia In Complex With Benzamidine
(s434a- T475a-k437 Mutant)
Length = 238
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 240 NNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIA 299
+ + + V++ +H++Y AE DIALLKL V + + +PICLP K +
Sbjct: 70 DTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKG--DRNVIYTDC 127
Query: 300 TVAGWGYYTYTTAISNAKNTLKFP 323
V GWGY I N K P
Sbjct: 128 WVTGWGYRKLRDKIQNTLQKAKIP 151
>pdb|1UTJ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTK|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTL|M Chain M, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTM|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
Length = 242
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 227 EVKLGAHYLS-SQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
EV+LG H + ++ + + H Y I +DI L+KL + ++QP+ LP
Sbjct: 67 EVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP 126
Query: 286 IKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKFPGMS 326
A + TV+GWG +TA SN L P +S
Sbjct: 127 T----SCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILS 163
>pdb|1BZX|E Chain E, The Crystal Structure Of Anionic Salmon Trypsin In Complex
With Bovine Pancreatic Trypsin Inhibitor
pdb|2STA|E Chain E, Anionic Salmon Trypsin In Complex With Squash Seed
Inhibitor (Cucurbita Maxima Trypsin Inhibitor I)
pdb|2STB|E Chain E, Anionic Salmon Trypsin In Complex With Squash Seed
Inhibitor (cucurbita Pepo Trypsin Inhibitor Ii)
Length = 222
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 227 EVKLGAHYLS-SQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
EV+LG H + ++ + + H Y I +DI L+KL + ++QP+ LP
Sbjct: 47 EVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP 106
Query: 286 IKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKFPGMS 326
A + TV+GWG +TA SN L P +S
Sbjct: 107 T----SCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILS 143
>pdb|1BIT|A Chain A, The Crystal Structure Of Anionic Salmon Trypsin In A
Second Crystal Form
Length = 237
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 227 EVKLGAHYLS-SQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
EV+LG H + ++ + + H Y I +DI L+KL + ++QP+ LP
Sbjct: 62 EVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP 121
Query: 286 IKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKFPGMS 326
A + TV+GWG +TA SN L P +S
Sbjct: 122 T----SCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILS 158
>pdb|1HJ8|A Chain A, 1.00 Aa Trypsin From Atlantic Salmon
Length = 222
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 227 EVKLGAHYLS-SQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
EV+LG H + ++ + + H Y I +DI L+KL + ++QP+ LP
Sbjct: 47 EVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP 106
Query: 286 IKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKFPGMS 326
A + TV+GWG +TA SN L P +S
Sbjct: 107 T----SCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILS 143
>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To
Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane
Length = 235
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 8/165 (4%)
Query: 246 VEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305
+++ ++ Y+K +DIA++ L KV +T++IQPICLP + Q I ++AGWG
Sbjct: 75 IDQIVINPHYNKRRKNNDIAMMHLEMKVNYTDYIQPICLPEEN--QVFPPGRICSIAGWG 132
Query: 306 YYTYTTAISNAKNTLKFPGMSLQILQWFVDSYH-SIHLENYATEA-AISNANNTLKFPGM 363
Y + ++ P +S + Q + Y+ + ++ EA + + P M
Sbjct: 133 ALIYQGSTADVLQEADVPLLSNEKCQQQMPEYNITENMVCAGYEAGGVDSCQGDSGGPLM 192
Query: 364 SLQILQWFVDSYKLNSSLGAVAPTPKPQSGLFVYGVKFLQWLYWF 408
+ +W + +S G P + G++ +F +W+ F
Sbjct: 193 CQENNRWLLAGV---TSFGYQCALPN-RPGVYARVPRFTEWIQSF 233
>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A
Tripeptide Phosphonate Inhibitor
Length = 253
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 12/106 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKFPGMSLQIL 330
P + + A++ GY T N K T P + LQ++
Sbjct: 121 PDR--------ETAASLLQAGYKGRVTGWGNLKETWGQPSV-LQVV 157
>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of
Prophenoloxidase Activating Factor-I In A Zymogen Form
Length = 278
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 246 VEKTFLHEKY-DKAEIK-SDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAG 303
+E+T H Y D ++ + DIAL++L R+V+FTN+I+P+CLP + + Q + TV G
Sbjct: 114 IEETIQHPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLP-QPNEEVQVGQRL-TVVG 171
Query: 304 WGYYTYTTAISNAKNTLKFP 323
WG T T S K L P
Sbjct: 172 WG-RTETGQYSTIKQKLAVP 190
>pdb|1BTH|H Chain H, Structure Of Thrombin Complexed With Bovine Pancreatic
Trypsin Inhibitor
pdb|1BTH|K Chain K, Structure Of Thrombin Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 259
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 8/100 (8%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQA--IATVAGWGYY--TYTTAISNAKNTL 320
P ++ QA V GWG T+TT + + ++
Sbjct: 121 PDRET-AASLLQAGYKGRVTGWGNLKETWTTNVGKGQPSV 159
>pdb|3R3G|B Chain B, Structure Of Human Thrombin With Residues 145-150 Of
Murine Thrombin
Length = 259
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQA--IATVAGWGYY--TYTTAISNAKNTL 320
P ++ QA V GWG T+TT I+ + ++
Sbjct: 121 PDRET-AASLLQAGYKGRVTGWGNLRETWTTNINEIQPSV 159
>pdb|1HYL|A Chain A, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum
pdb|1HYL|B Chain B, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum
pdb|2HLC|A Chain A, Hl Collagenase Structure At 1.7a Resolution
pdb|2HLC|B Chain B, Hl Collagenase Structure At 1.7a Resolution
Length = 230
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 69/162 (42%), Gaps = 27/162 (16%)
Query: 174 GLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEVKLGAH 233
GL PY + +D + R RV G L D W LT V V +
Sbjct: 10 GLFPYQAGLDITLQDQR--RVWCGGSLIDNKWI---------LTAAHCVHDAVSVVV--- 55
Query: 234 YLSSQL---NNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYW 290
YL S + AV E+ H ++ +D+AL+K+ V++T+ IQPI LP +
Sbjct: 56 YLGSAVQYEGEAVVNSERIISHSMFNPDTYLNDVALIKI-PHVEYTDNIQPIRLPSGEEL 114
Query: 291 QHDFAQAIATVAGWG---------YYTYTTAISNAKNTLKFP 323
+ F ATV+GWG YTY I N + ++P
Sbjct: 115 NNKFENIWATVSGWGQSNTDTVILQYTYNLVIDNDRCAQEYP 156
>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With
Clavatadine A
Length = 238
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 240 NNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIA 299
+ + + V++ +H++Y AE DIALLKL V +T+ +PI LP K + +
Sbjct: 70 DTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKG--ERNVIYTDC 127
Query: 300 TVAGWGYYTYTTAISNAKNTLKFP 323
V GWGY I N K P
Sbjct: 128 WVTGWGYRKLRDKIQNTLQKAKIP 151
>pdb|1VZQ|H Chain H, Complex Of Thrombin With Designed Inhibitor 7165
Length = 250
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H ++ N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTAYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 121 PDR--------ETAASLLQAGYKGRVTGWGNLKET 147
>pdb|1NU9|A Chain A, Staphylocoagulase-prethrombin-2 Complex
pdb|1NU9|D Chain D, Staphylocoagulase-prethrombin-2 Complex
Length = 291
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 93 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 152
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 153 PDR--------ETAASLLQAGYKGRVTGWGNLKET 179
>pdb|2BDY|A Chain A, Thrombin In Complex With Inhibitor
Length = 289
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 91 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 150
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 151 PDR--------ETAASLLQAGYKGRVTGWGNLKET 177
>pdb|3SQE|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The
Alternative Form
pdb|3SQH|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The The
Open Form
Length = 290
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 92 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 151
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 152 PDR--------ETAASLLQAGYKGRVTGWGNLKET 178
>pdb|1NM6|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor
At 1.8a
pdb|1NT1|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor
pdb|1TA2|A Chain A, Crystal Structure Of Thrombin In Complex With Compound 1
pdb|1TA6|A Chain A, Crystal Structure Of Thrombin In Complex With Compound 14b
pdb|1SL3|A Chain A, Crystal Structue Of Thrombin In Complex With A Potent P1
Heterocycle- Aryl Based Inhibitor
pdb|1Z71|A Chain A, Thrombin And P2 Pyridine N-oxide Inhibitor Complex
Structure
pdb|1ZRB|A Chain A, Thrombin In Complex With An Azafluorenyl Inhibitor 23b
pdb|1ZGI|A Chain A, Thrombin In Complex With An Oxazolopyridine Inhibitor 21
pdb|1ZGV|A Chain A, Thrombin In Complex With An Oxazolopyridine Inhibitor 2
pdb|3C1K|A Chain A, Crystal Structure Of Thrombin In Complex With Inhibitor 15
Length = 287
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 90 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 149
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 150 PDR--------ETAASLLQAGYKGRVTGWGNLKET 176
>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel
Bicyclic Lactam Inhibitor
Length = 305
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 97 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 156
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 157 PDR--------ETAASLLQAGYKGRVTGWGNLKET 183
>pdb|1D6W|A Chain A, Structure Of Thrombin Complexed With Selective
Non-Electrophilic Inhibitors Having Cyclohexyl Moieties
At P1
pdb|1G37|A Chain A, Crystal Structure Of Human Alpha-thrombin Complexed With
Bch-10556 And Exosite-directed Peptide
Length = 287
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 91 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 150
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 151 PDR--------ETAASLLQAGYKGRVTGWGNLKET 177
>pdb|1D9I|A Chain A, Structure Of Thrombin Complexed With Selective
Non-Electophilic Inhibitors Having Cyclohexyl Moieties
At P1
Length = 288
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 91 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 150
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 151 PDR--------ETAASLLQAGYKGRVTGWGNLKET 177
>pdb|1EOJ|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin
Inhibitors And Their Crystal Structures
pdb|1EOL|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin
Inhibitors And Their Crystal Structures
Length = 289
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 93 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 152
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 153 PDR--------ETAASLLQAGYKGRVTGWGNLKET 179
>pdb|1HAG|E Chain E, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|1DOJ|A Chain A, Crystal Structure Of Human Alpha-ThrombinRwj-51438 Complex
At 1.7 A
pdb|1XM1|A Chain A, Nonbasic Thrombin Inhibitor Complex
Length = 295
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 97 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 156
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 157 PDR--------ETAASLLQAGYKGRVTGWGNLKET 183
>pdb|2TBS|A Chain A, Cold-Adaption Of Enzymes: Structural Comparison Between
Salmon And Bovine Trypsins
Length = 222
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 227 EVKLGAHYLS-SQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
EV+LG H + ++ + + H Y I +DI L+KL + ++QP+ LP
Sbjct: 47 EVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP 106
Query: 286 IKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKFPGMS 326
A + TV+GWG +TA S+ L P +S
Sbjct: 107 T----SCAPAGTMCTVSGWGNTMSSTADSDKLQCLNIPILS 143
>pdb|3F6U|H Chain H, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 240
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 246 VEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAI--ATVAG 303
+++ F+H Y K+ +DIALL L + + I PICLP + + QA V G
Sbjct: 71 IKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTG 130
Query: 304 WGYYT 308
WGY++
Sbjct: 131 WGYHS 135
>pdb|1B7X|B Chain B, Structure Of Human Alpha-Thrombin Y225i Mutant Bound To D-
Phe-Pro-Arg-Chloromethylketone
Length = 259
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 121 PDR--------ETAASLLQAGYKGRVTGWGNLKET 147
>pdb|1BHX|B Chain B, X-Ray Structure Of The Complex Of Human Alpha Thrombin
With The Inhibitor Sdz 229-357
pdb|1RIW|B Chain B, Thrombin In Complex With Natural Product Inhibitor
Oscillarin
pdb|2PKS|B Chain B, Thrombin In Complex With Inhibitor
pdb|3PO1|B Chain B, Thrombin In Complex With Benzothiazole Guanidine
Length = 147
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 121 PDR--------ETAASLLQAGYKGRVTGWGNLKET 147
>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2
pdb|1Q3X|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-2
Length = 328
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 247 EKTFLHEKYD-KAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305
E F+HE Y A +DIAL+KL KV + I PICLP K+ I T +GWG
Sbjct: 157 EAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWG 216
>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To
D-Phe-Pro-Arg- Chloromethylketone
pdb|3S7H|B Chain B, Structure Of Thrombin Mutant Y225p In The E Form
pdb|3S7K|B Chain B, Structure Of Thrombin Mutant Y225p In The E Form
pdb|3S7K|D Chain D, Structure Of Thrombin Mutant Y225p In The E Form
Length = 259
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 121 PDR--------ETAASLLQAGYKGRVTGWGNLKET 147
>pdb|1MBQ|A Chain A, Anionic Trypsin From Pacific Chum Salmon
Length = 220
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 227 EVKLGAHYLS-SQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
EV+LG H + ++ + + H Y I +DI L+KL + ++QP+ LP
Sbjct: 47 EVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKSATLNTYVQPVALP 106
Query: 286 IKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKFPGMS 326
A + TV+GWG +TA N L P +S
Sbjct: 107 S----SCAPAGTMCTVSGWGNTMSSTADKNKLQCLNIPILS 143
>pdb|1AUT|C Chain C, Human Activated Protein C
Length = 250
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 246 VEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAI--ATVAG 303
+++ F+H Y K+ +DIALL L + + I PICLP + + QA V G
Sbjct: 71 IKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTG 130
Query: 304 WGYYT 308
WGY++
Sbjct: 131 WGYHS 135
>pdb|2THF|B Chain B, Structure Of Human Alpha-thrombin Y225f Mutant Bound To
D-phe-pro-arg- Chloromethylketone
Length = 259
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 121 PDR--------ETAASLLQAGYKGRVTGWGNLKET 147
>pdb|1DX5|M Chain M, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|N Chain N, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|O Chain O, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|P Chain P, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1E0F|D Chain D, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
pdb|1E0F|F Chain F, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
pdb|1E0F|E Chain E, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
Length = 259
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 121 PDR--------ETAASLLQAGYKGRVTGWGNLKET 147
>pdb|3K65|B Chain B, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex
Length = 308
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 110 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 169
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 170 PDR--------ETAASLLQAGYKGRVTGWGNLKET 196
>pdb|1H8D|H Chain H, X-Ray Structure Of The Human Alpha-Thrombin Complex With A
Tripeptide Phosphonate Inhibitor
Length = 260
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 121 PDR--------ETAASLLQAGYKGRVTGWGNLKET 147
>pdb|1Z8J|B Chain B, Crystal Structure Of The Thrombin Mutant G193p Bound To
Ppack
Length = 259
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 121 PDR--------ETAASLLQAGYKGRVTGWGNLKET 147
>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole
Inhibitor
pdb|3SOS|A Chain A, Benzothiazinone Inhibitor In Complex With Fxia
Length = 238
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 240 NNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIA 299
+ + + V++ +H++Y AE DIALLKL V +T+ +PI LP K +
Sbjct: 70 DTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKG--DRNVIYTDC 127
Query: 300 TVAGWGYYTYTTAISNAKNTLKFP 323
V GWGY I N K P
Sbjct: 128 WVTGWGYRKLRDKIQNTLQKAKIP 151
>pdb|1QUR|H Chain H, Human Alpha-Thrombin In Complex With Bivalent,
Benzamidine-Based Synthetic Inhibitor
pdb|1D3D|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzothiophene Inhibitor 4
pdb|1EB1|H Chain H, Complex Structure Of Human Thrombin With N-Methyl-Arginine
Inhibitor
pdb|1GHV|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1YPE|H Chain H, Thrombin Inhibitor Complex
pdb|1YPG|H Chain H, Thrombin Inhibitor Complex
pdb|1YPJ|H Chain H, Thrombin Inhibitor Complex
pdb|1YPK|H Chain H, Thrombin Inhibitor Complex
pdb|1YPL|H Chain H, X-Ray Crystal Structure Of Thrombin Inhibited By Synthetic
Cyanopeptide Analogue Ra-1008
pdb|1YPM|H Chain H, X-ray Crystal Structure Of Thrombin Inhibited By Synthetic
Cyanopeptide Analogue Ra-1014
pdb|2ANM|H Chain H, Ternary Complex Of An Orally Active Thrombin Inhibitor
With Human Thrombin And A C-Terminal Hirudin Derived
Exo-Sit Inhibitor
pdb|2CF9|H Chain H, Complex Of Recombinant Human Thrombin With A Inhibitor
pdb|1GHX|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GHY|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|2CF8|H Chain H, Complex Of Recombinant Human Thrombin With A Inhibitor
pdb|2CN0|H Chain H, Complex Of Recombinant Human Thrombin With A Designed
Inhibitor
pdb|3BIU|H Chain H, Human Thrombin-In Complex With Ub-Thr10
pdb|3BIV|H Chain H, Human Thrombin-In Complex With Ub-Thr11
pdb|2V3H|H Chain H, Thrombin With 3-Cycle No F
pdb|2V3O|H Chain H, Thrombin With 3-Cycle With F
pdb|4AX9|H Chain H, Human Thrombin Complexed With Napsagatran, Ro0466240
pdb|4AYV|B Chain B, Human Thrombin - Inhibitor Complex
pdb|4AYY|B Chain B, Human Thrombin - Inhibitor Complex
pdb|4AZ2|B Chain B, Human Thrombin - Inhibitor Complex
pdb|1GHW|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-centered Short Hydrogen Bonding Network At The
Active Site
Length = 257
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 121 PDR--------ETAASLLQAGYKGRVTGWGNLKET 147
>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k
pdb|1RD3|D Chain D, 2.5a Structure Of Anticoagulant Thrombin Variant E217k
Length = 259
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 121 PDR--------ETAASLLQAGYKGRVTGWGNLKET 147
>pdb|1DM4|B Chain B, Ser195ala Mutant Of Human Thrombin Complexed With
Fibrinopeptide A (7- 16)
pdb|1JMO|H Chain H, Crystal Structure Of The Heparin Cofactor Ii-S195a
Thrombin Complex
Length = 260
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 62 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 121
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 122 PDR--------ETAASLLQAGYKGRVTGWGNLKET 148
>pdb|1GJ5|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa,
Ser190ALA190 PROTEASE, Structure-Based Drug Design
pdb|1SB1|H Chain H, Novel Non-Covalent Thrombin Inhibitors Incorporating P1
4,5,6,7- Tetrahydrobenzothiazole Arginine Side Chain
Mimetics
pdb|2PW8|H Chain H, Crystal Structure Of Sulfo-Hirudin Complexed To Thrombin
pdb|3DD2|H Chain H, Crystal Structure Of An Rna Aptamer Bound To Human
Thrombin
pdb|1GJ4|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa,
Ser190/ala190 Protease, Structure-based Drug Design
Length = 258
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 121 PDR--------ETAASLLQAGYKGRVTGWGNLKET 147
>pdb|1ABI|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of
The S' Subsites Of Substrates And Inhibitors
pdb|1ABJ|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of
The S' Subsites Of Substrates And Inhibitors
pdb|1DWB|H Chain H, Crystallographic Analysis At 3.0-angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-directed Inhibitors
pdb|1DWC|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1DWD|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1DWE|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1FPH|H Chain H, The Interaction Of Thrombin With Fibrinogen: A Structural
Basis For Its Specificity
pdb|1HGT|H Chain H, Structure Of The Hirugen And Hirulog 1 Complexes Of Alpha-
Thrombin
pdb|1IHS|H Chain H, Crystal Structure Of The Complex Of Human Alpha-thrombin
And Non- Hydrolyzable Bifunctional Inhibitors,
Hirutonin-2 And Hirutonin-6
pdb|1IHT|H Chain H, Crystal Structure Of The Complex Of Human Alpha-Thrombin
And Non- Hydrolyzable Bifunctional Inhibitors,
Hirutonin-2 And Hirutonin-6
pdb|1PPB|H Chain H, The Refined 1.9 Angstroms Crystal Structure Of Human
Alpha-Thrombin: Interaction With D-Phe-Pro-Arg
Chloromethylketone And Significance Of The
Tyr-Pro-Pro-Trp Insertion Segment
pdb|1THR|H Chain H, Structures Of Thrombin Complexes With A Designed And A
Natural Exosite Inhibitor
pdb|1THS|H Chain H, Structures Of Thrombin Complexes With A Designed And A
Natural Exosite Inhibitor
pdb|1TMB|H Chain H, Molecular Basis For The Inhibition Of Human Alpha-thrombin
By The Macrocyclic Peptide Cyclotheonamide A
pdb|2HGT|H Chain H, Structure Of The Hirugen And Hirulog 1 Complexes Of
Alpha-Thrombin
pdb|2HPP|H Chain H, Structures Of The Noncovalent Complexes Of Human And
Bovine Prothrombin Fragment 2 With Human Ppack-Thrombin
pdb|2HPQ|H Chain H, Structures Of The Noncovalent Complexes Of Human And
Bovine Prothrombin Fragment 2 With Human Ppack-thrombin
pdb|3HTC|H Chain H, The Structure Of A Complex Of Recombinant Hirudin And
Human Alpha-Thrombin
pdb|4HTC|H Chain H, The Refined Structure Of The Hirudin-Thrombin Complex
pdb|1HUT|H Chain H, The Structure Of Alpha-Thrombin Inhibited By A 15-Mer
Single-Stranded Dna Aptamer
pdb|1NRN|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRO|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRP|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRQ|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRR|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRS|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1TMT|H Chain H, Changes In Interactions In Complexes Of Hirudin
Derivatives And Human Alpha-Thrombin Due To Different
Crystal Forms
pdb|1TMU|H Chain H, Changes In Interactions In Complexes Of Hirudin
Derivatives And Human Alpha-Thrombin Due To Different
Crystal Forms
pdb|1HLT|H Chain H, The Structure Of A Nonadecapeptide Of The Fifth Egf Domain
Of Thrombomodulin Complexed With Thrombin
pdb|1HLT|K Chain K, The Structure Of A Nonadecapeptide Of The Fifth Egf Domain
Of Thrombomodulin Complexed With Thrombin
pdb|1HAH|H Chain H, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|1HAI|H Chain H, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|3HAT|H Chain H, Active Site Mimetic Inhibition Of Thrombin
pdb|1FPC|H Chain H, Active Site Mimetic Inhibition Of Thrombin
pdb|1HBT|H Chain H, Human Alpha-Thrombin Complexed With A Peptidyl Pyridinium
Methyl Ketone Containing Bivalent Inhibitor
pdb|1HDT|H Chain H, Structure Of A Retro-Binding Peptide Inhibitor Complexed
With Human Alpha-Thrombin
pdb|1HAO|H Chain H, Complex Of Human Alpha-thrombin With A 15mer
Oligonucleotide Ggttggtgtggttgg (based On Nmr Model Of
Dna)
pdb|1HAP|H Chain H, Complex Of Human Alpha-Thrombin With A 15mer
Oligonucleotide Ggttggtgtggttgg (Based On X-Ray Model Of
Dna)
pdb|1AHT|H Chain H, Crystal Structure Of Human Alpha-Thrombin Complexed With
Hirugen And P-Amidinophenylpyruvate At 1.6 Angstroms
Resolution
pdb|1DIT|H Chain H, Complex Of A Divalent Inhibitor With Thrombin
pdb|1TOM|H Chain H, Alpha-Thrombin Complexed With Hirugen
pdb|1HXF|H Chain H, Human Thrombin Complex With Hirudin Variant
pdb|1BMM|H Chain H, Human Alpha-Thrombin Complexed With
[s-(R,R)]-4-[(Aminoiminomethyl)
Amino]-N-[[1-[3-Hydroxy-2-[(2-
Naphthalenylsulfonyl)amino]-1-
Oxopropyl]-2-Pyrrolidinyl] Methyl]butanamide
(Bms-186282)
pdb|1BMN|H Chain H, Human Alpha-Thrombin Complexed With
[s-(R,R)]-1-(Aminoiminomethyl)-
N-[[1-[n-[(2-Naphthalenylsulfonyl)-L-Seryl]-
Pyrrolidinyl]methyl]-3- Piperidenecarboxamide
(Bms-189090)
pdb|1UMA|H Chain H, Alpha-Thrombin (Hirugen) Complexed With
Na-(N,N-Dimethylcarbamoyl)- Alpha-Azalysine
pdb|1LHD|H Chain H, Human Alpha-thrombin Complexed With
Ac-(d)phe-pro-borolys-oh
pdb|1LHE|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-Boro-N-
Butyl-Amidino-Glycine-Oh
pdb|1LHF|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-Boro-
Homolys-Oh
pdb|1LHG|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-
Boroornithine-Oh
pdb|1LHC|H Chain H, Human Alpha-Thrombin Complexed With
Ac-(D)phe-Pro-Boroarg-Oh
pdb|1AD8|H Chain H, Complex Of Thrombin With And Inhibitor Containing A Novel
P1 Moiety
pdb|1AI8|H Chain H, Human Alpha-Thrombin Ternary Complex With The Exosite
Inhibitor Hirugen And Active Site Inhibitor
Phch2oco-D-Dpa-Pro-Borompg
pdb|1AIX|H Chain H, Human Alpha-Thrombin Ternary Complex With Exosite
Inhibitor Hirugen And Active Site Inhibitor
Phch2oco-D-Dpa-Pro-Boroval
pdb|1AE8|H Chain H, Human Alpha-Thrombin Inhibition By
Eoc-D-Phe-Pro-Azalys-Onp
pdb|1AFE|H Chain H, Human Alpha-Thrombin Inhibition By Cbz-Pro-Azalys-Onp
pdb|1UVS|H Chain H, Bovine Thrombin--Bm51.1011 Complex
pdb|5GDS|H Chain H, Hirunorms Are True Hirudin Mimetics. The Crystal Structure
Of Human Alpha-Thrombin:hirunorm V Complex
pdb|1AY6|H Chain H, Thrombin Inhibitor From Theonalla, Cyclotheanamide-Based
Macrocyclic Tripeptide Motif
pdb|1A46|H Chain H, Thrombin Complexed With Hirugen And A Beta-Strand Mimetic
Inhibitor
pdb|1A4W|H Chain H, Crystal Structures Of Thrombin With Thiazole-Containing
Inhibitors: Probes Of The S1' Binding Site
pdb|1A5G|H Chain H, Human Thrombin Complexed With Novel Synthetic Peptide
Mimetic Inhibitor And Hirugen
pdb|1B5G|H Chain H, Human Thrombin Complexed With Novel Synthetic Peptide
Mimetic Inhibitor And Hirugen
pdb|1TBZ|H Chain H, Human Thrombin With Active Site N-Methyl-D
Phenylalanyl-N-[5-
(Aminoiminomethyl)amino]-1-{{benzothiazolyl)carbonyl]
Butyl]-L- Prolinamide Trifluroacetate And
Exosite-Hirugen
pdb|1A2C|H Chain H, Structure Of Thrombin Inhibited By Aeruginosin298-A From A
Blue-Green Alga
pdb|1A61|H Chain H, Thrombin Complexed With A Beta-Mimetic Thiazole-Containing
Inhibitor
pdb|1A3B|H Chain H, Complex Of Human Alpha-Thrombin With The Bifunctional
Boronate Inhibitor Borolog1
pdb|1A3E|H Chain H, Complex Of Human Alpha-Thrombin With The Bifunctional
Boronate Inhibitor Borolog2
pdb|1AWF|H Chain H, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1AWH|B Chain B, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1AWH|D Chain D, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1BCU|H Chain H, Alpha-Thrombin Complexed With Hirugen And Proflavin
pdb|8KME|2 Chain 2, Crystal Structure Of Human Alpha-thrombin Inhibited With
Sel2770.
pdb|1BA8|B Chain B, Thrombin Inhibitor With A Rigid Tripeptidyl Aldehydes
pdb|1BB0|B Chain B, Thrombin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|1CA8|B Chain B, Thrombin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|4THN|H Chain H, The Crystal Structure Of Alpha-Thrombin-Hirunorm Iv
Complex Reveals A Novel Specificity Site Recognition
Mode.
pdb|1QBV|H Chain H, Crystal Structure Of Thrombin Complexed With An
Guanidine-Mimetic Inhibitor
pdb|1D4P|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
5- Amidinoindole-4-benzylpiperidine Inhibitor
pdb|7KME|H Chain H, Crystal Structure Of Human Alpha-Thrombin Inhibited With
Sel2711.
pdb|1QHR|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ1|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ6|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ7|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1D3P|B Chain B, Crystal Structure Of Human Aplha-Thrombin In Complex With
Benzo[b]thiophene Inhibitor 3
pdb|1D3Q|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzo[b]thiophene Inhibitor 2
pdb|1D3T|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzo[b]thiophene Inhibitor 1
pdb|1C4U|2 Chain 2, Selective Non Electrophilic Thrombin Inhibitors With
Cyclohexyl Moieties.
pdb|1C4V|2 Chain 2, Selective Non Electrophilic Thrombin Inhibitors With
Cyclohexyl Moieties.
pdb|1C4Y|2 Chain 2, Selective Non-Electrophilic Thrombin Inhibitors
pdb|1DE7|H Chain H, Interaction Of Factor Xiii Activation Peptide With
Alpha-Thrombin: Crystal Structure Of The
Enzyme-Substrate Complex
pdb|1DE7|K Chain K, Interaction Of Factor Xiii Activation Peptide With
Alpha-Thrombin: Crystal Structure Of The
Enzyme-Substrate Complex
pdb|1G30|B Chain B, Thrombin Inhibitor Complex
pdb|1G32|B Chain B, Thrombin Inhibitor Complex
pdb|1KTS|B Chain B, Thrombin Inhibitor Complex
pdb|1KTT|B Chain B, Thrombin Inhibitor Complex
pdb|1K21|H Chain H, Human Thrombin-Inhibitor Complex
pdb|1K22|H Chain H, Human Thrombin-inhibitor Complex
pdb|1NY2|2 Chain 2, Human Alpha Thrombin Inhibited By Rppgf And Hirugen
pdb|1O2G|H Chain H, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1OYT|H Chain H, Complex Of Recombinant Human Thrombin With A Designed
Fluorinated Inhibitor
pdb|1NO9|H Chain H, Design Of Weakly Basic Thrombin Inhibitors Incorporating
Novel P1 Binding Functions: Molecular And X-Ray
Crystallographic Studies.
pdb|1OOK|B Chain B, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
pdb|1P8V|C Chain C, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
pdb|1NU7|B Chain B, Staphylocoagulase-Thrombin Complex
pdb|1NU7|F Chain F, Staphylocoagulase-Thrombin Complex
pdb|1NZQ|H Chain H, D-Phe-Pro-Arg-Type Thrombin Inhibitor
pdb|1O0D|H Chain H, Human Thrombin Complexed With A D-Phe-Pro-Arg-Type
Inhibitor And A C- Terminal Hirudin Derived Exo-Site
Inhibitor
pdb|1MU6|B Chain B, Crystal Structure Of Thrombin In Complex With L-378,622
pdb|1MU8|B Chain B, Thrombin-Hirugen_l-378,650
pdb|1MUE|B Chain B, Thrombin-Hirugen-L405,426
pdb|1SR5|C Chain C, Antithrombin-Anhydrothrombin-Heparin Ternary Complex
Structure
pdb|1O5G|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1XMN|B Chain B, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|D Chain D, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|F Chain F, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|H Chain H, Crystal Structure Of Thrombin Bound To Heparin
pdb|1WAY|B Chain B, Active Site Thrombin Inhibitors
pdb|1T4U|H Chain H, Crystal Structure Analysis Of A Novel Oxyguanidine Bound
To Thrombin
pdb|1T4V|H Chain H, Crystal Structure Analysis Of A Novel Oxyguanidine Bound
To Thrombin
pdb|2AFQ|B Chain B, 1.9 Angstrom Crytal Structure Of Wild-Type Human Thrombin
In The Sodium Free State
pdb|2AFQ|D Chain D, 1.9 Angstrom Crytal Structure Of Wild-Type Human Thrombin
In The Sodium Free State
pdb|2A45|B Chain B, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|2A45|E Chain E, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|1W7G|H Chain H, Alpha-Thrombin Complex With Sulfated Hirudin (Residues
54-65) And L- Arginine Template Inhibitor Cs107
pdb|2FES|H Chain H, Orally Active Thrombin Inhibitors
pdb|2C8W|B Chain B, Thrombin Inhibitors
pdb|2C8X|B Chain B, Thrombin Inhibitors
pdb|2C8Y|B Chain B, Thrombin Inhibitors
pdb|2C8Z|B Chain B, Thrombin Inhibitors
pdb|2C90|B Chain B, Thrombin Inhibitors
pdb|2C93|B Chain B, Thrombin Inhibitors
pdb|2FEQ|H Chain H, Orally Active Thrombin Inhibitors
pdb|2BVS|H Chain H, Human Thrombin Complexed With Fragment-Based Small
Molecules Occupying The S1 Pocket
pdb|2BVX|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-P2-Linker
pdb|2BXT|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-p2-linker
pdb|2BXU|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-p2-linker
pdb|2A2X|H Chain H, Orally Active Thrombin Inhibitors In Complex With Thrombin
Inh12
pdb|2ANK|H Chain H, Orally Active Thrombin Inhibitors In Complex With Thrombin
And An Exosite Decapeptide
pdb|2GDE|H Chain H, Thrombin In Complex With Inhibitor
pdb|2H9T|H Chain H, Crystal Structure Of Human Alpha-Thrombin In Complex With
Suramin
pdb|2JH0|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|2JH5|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|2JH6|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|1C1U|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1V|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1W|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C5L|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5N|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5O|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1HXE|H Chain H, Serine Protease
pdb|2UUF|B Chain B, Thrombin-Hirugen Binary Complex At 1.26a Resolution
pdb|2UUJ|B Chain B, Thrombin-Hirugen-Gw473178 Ternary Complex At 1.32a
Resolution
pdb|2UUK|B Chain B, Thrombin-Hirugen-Gw420128 Ternary Complex At 1.39a
Resolution
pdb|3BF6|H Chain H, Thrombin:suramin Complex
pdb|2R2M|B Chain B, 2-(2-chloro-6-fluorophenyl)acetamides As Potent Thrombin
Inhibitors
pdb|3EGK|H Chain H, Knoble Inhibitor
pdb|2ZC9|H Chain H, Thrombin In Complex With Inhibitor
pdb|2ZDA|H Chain H, Exploring Thrombin S1 Pocket
pdb|2ZDV|H Chain H, Exploring Thrombin S1 Pocket
pdb|2ZF0|H Chain H, Exploring Thrombin S1 Pocket
pdb|3E6P|H Chain H, Crystal Structure Of Human Meizothrombin Desf1
pdb|2ZFF|H Chain H, Exploring Thrombin S1-Pocket
pdb|2ZFP|H Chain H, Thrombin Inibition
pdb|2ZGB|H Chain H, Thrombin Inhibition
pdb|2ZGX|H Chain H, Thrombin Inhibition
pdb|2ZFQ|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZFR|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHQ|H Chain H, Thrombin Inhibition
pdb|2ZI2|H Chain H, Thrombin Inhibition
pdb|2ZIQ|H Chain H, Thrombin Inhibition
pdb|2ZG0|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHE|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHF|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHW|H Chain H, Exploring Thrombin S3 Pocket
pdb|3C27|B Chain B, Cyanofluorophenylacetamides As Orally Efficacious Thrombin
Inhibitors
pdb|2ZNK|H Chain H, Thrombin Inhibition
pdb|2ZO3|H Chain H, Bisphenylic Thrombin Inhibitors
pdb|3D49|H Chain H, Thrombin Inhibition
pdb|3DA9|B Chain B, Crystal Structure Of Thrombin In Complex With Inhibitor
pdb|3DHK|H Chain H, Bisphenylic Thrombin Inhibitors
pdb|3DT0|H Chain H, Understanding Thrombin Inhibition
pdb|3DUX|H Chain H, Understanding Thrombin Inhibition
pdb|3EQ0|H Chain H, Thrombin Inhibitor
pdb|3F68|H Chain H, Thrombin Inhibition
pdb|3PMH|B Chain B, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
pdb|3P6Z|B Chain B, Structural Basis Of Thrombin Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P6Z|H Chain H, Structural Basis Of Thrombin Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3LDX|H Chain H, Discovery And Clinical Evaluation Of Rwj-671818, A
Thrombin Inhibitor With An Oxyguanidine P1 Motif
pdb|3P70|B Chain B, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|D Chain D, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|F Chain F, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|H Chain H, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3TU7|H Chain H, Human Alpha-Thrombin Complexed With
N-(Methylsulfonyl)-D-Phenylalanyl-
N-((1-Carbamimidoyl-4-Piperidinyl)methyl)-L-Prolinamide
(Bms-189664)
pdb|3QLP|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And A Modified Thrombin Binding Aptamer (Mtba)
pdb|3P17|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3B23|B Chain B, Crystal Structure Of Thrombin-Variegin Complex: Insights
Of A Novel Mechanism Of Inhibition And Design Of Tunable
Thrombin Inhibitors
pdb|3QTO|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QTV|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QX5|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QWC|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3U69|H Chain H, Unliganded Wild-Type Human Thrombin
pdb|3U8T|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-Cys
pdb|3RLW|H Chain H, Human Thrombin In Complex With Mi328
pdb|3RLY|H Chain H, Human Thrombin In Complex With Mi329
pdb|3RM0|H Chain H, Human Thrombin In Complex With Mi354
pdb|3RM2|H Chain H, Human Thrombin In Complex With Mi003
pdb|3RML|H Chain H, Human Thrombin In Complex With Mi331
pdb|3RMM|H Chain H, Human Thrombin In Complex With Mi332
pdb|3RMN|H Chain H, Human Thrombin In Complex With Mi341
pdb|3RMO|H Chain H, Human Thrombin In Complex With Mi004
pdb|3U8O|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-D-Thr
pdb|3U8R|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-Ile
pdb|3SHA|H Chain H, Human Thrombin In Complex With Ubthr97
pdb|3SHC|H Chain H, Human Thrombin In Complex With Ubthr101
pdb|3SI3|H Chain H, Human Thrombin In Complex With Ubthr103
pdb|3SI4|H Chain H, Human Thrombin In Complex With Ubthr104
pdb|3SV2|H Chain H, Human Thrombin In Complex With Ubthr105
pdb|4E7R|H Chain H, Thrombin In Complex With 3-Amidinophenylalanine Inhibitor
pdb|4E7R|G Chain G, Thrombin In Complex With 3-Amidinophenylalanine Inhibitor
pdb|4DIH|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And Thrombin Binding Aptamer In The Presence Of
Sodium Ions
pdb|4DII|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And Thrombin Binding Aptamer In The Presence Of
Potassium Ions
pdb|3T5F|H Chain H, Human Thrombin In Complex With Mi340
pdb|3UTU|H Chain H, High Affinity Inhibitor Of Human Thrombin
pdb|3U98|H Chain H, Human Thrombin In Complex With Mi001
pdb|3U9A|H Chain H, Human Thrombin In Complex With Mi330
pdb|4E05|H Chain H, Anophelin From The Malaria Vector Inhibits Thrombin
Through A Novel Reverse-Binding Mechanism
pdb|4E06|H Chain H, Anophelin From The Malaria Vector Inhibits Thrombin
Through A Novel Reverse-Binding Mechanism
pdb|3UWJ|H Chain H, Human Thrombin In Complex With Mi353
pdb|4BAH|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAK|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAM|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAN|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAO|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAQ|B Chain B, Thrombin In Complex With Inhibitor
Length = 259
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 121 PDR--------ETAASLLQAGYKGRVTGWGNLKET 147
>pdb|1WBG|B Chain B, Active Site Thrombin Inhibitors
Length = 259
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 121 PDR--------ETAASLLQAGYKGRVTGWGNLKET 147
>pdb|1Z8I|B Chain B, Crystal Structure Of The Thrombin Mutant G193a Bound To
Ppack
Length = 259
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 121 PDR--------ETAASLLQAGYKGRVTGWGNLKET 147
>pdb|1JOU|B Chain B, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1JOU|D Chain D, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1JOU|F Chain F, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1TB6|H Chain H, 2.5a Crystal Structure Of The
Antithrombin-Thrombin-Heparin Ternary Complex
pdb|2B5T|B Chain B, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
pdb|2B5T|D Chain D, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
pdb|3B9F|H Chain H, 1.6 A Structure Of The Pci-Thrombin-Heparin Complex
pdb|3GIS|B Chain B, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|D Chain D, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|F Chain F, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3LU9|B Chain B, Crystal Structure Of Human Thrombin Mutant S195a In
Complex Extracellular Fragment Of Human Par1
pdb|3LU9|E Chain E, Crystal Structure Of Human Thrombin Mutant S195a In
Complex Extracellular Fragment Of Human Par1
pdb|4DT7|B Chain B, Crystal Structure Of Thrombin Bound To The Activation
Domain Qedqvdprlidgkmtrrgds Of Protein C
pdb|4DT7|D Chain D, Crystal Structure Of Thrombin Bound To The Activation
Domain Qedqvdprlidgkmtrrgds Of Protein C
pdb|4DY7|B Chain B, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
pdb|4DY7|E Chain E, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
Length = 259
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 121 PDR--------ETAASLLQAGYKGRVTGWGNLKET 147
>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4-
Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole
pdb|1ZRK|A Chain A, Factor Xi Complexed With 3-Hydroxypropyl 3-(7-
Amidinonaphthalene-1-Carboxamido)benzenesulfonate
pdb|1ZSL|A Chain A, Factor Xi Complexed With A Pyrimidinone Inhibitor
Length = 238
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 240 NNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIA 299
+ + + V++ +H++Y AE DIALLKL V +T+ +PI LP K +
Sbjct: 70 DTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKG--DRNVIYTDC 127
Query: 300 TVAGWGYYTYTTAISNAKNTLKFP 323
V GWGY I N K P
Sbjct: 128 WVTGWGYRKLRDKIQNTLQKAKIP 151
>pdb|1MH0|A Chain A, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1MH0|B Chain B, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
Length = 287
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 91 VRIGKHSRTRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 150
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 151 PDR--------ETAASLLQAGYKGRVTGWGNLKET 177
>pdb|2PGB|B Chain B, Inhibitor-Free Human Thrombin Mutant C191a-C220a
pdb|2PGQ|B Chain B, Human Thrombin Mutant C191a-C220a In Complex With The
Inhibitor Ppack
Length = 259
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 121 PDR--------ETAASLLQAGYKGRVTGWGNLKET 147
>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1
Length = 261
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 65 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 124
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 125 PDR--------ETAASLLQAGYKGRVTGWGNLKET 151
>pdb|3EE0|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF HUMAN
Thrombin (Space Group P2(1)2(1)2(1))
pdb|3HKJ|B Chain B, Crystal Structure Of Human Thrombin Mutant W215aE217A IN
COMPLEX WITH The Extracellular Fragment Of Human Par1
pdb|3HKJ|E Chain E, Crystal Structure Of Human Thrombin Mutant W215aE217A IN
COMPLEX WITH The Extracellular Fragment Of Human Par1
Length = 259
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 121 PDR--------ETAASLLQAGYKGRVTGWGNLKET 147
>pdb|1EUF|A Chain A, Bovine Duodenase(New Serine Protease), Crystal Structure
Length = 227
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 228 VKLGAH-YLSSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V LGAH + + V PV + H Y+ + +DI LLKL RK T+ + PI LP
Sbjct: 52 VTLGAHNIMERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLP- 110
Query: 287 KQYWQHDFAQAIATVAGWG 305
+ + +VAGWG
Sbjct: 111 -RSLAEVKPGMMCSVAGWG 128
>pdb|1TWX|B Chain B, Crystal Structure Of The Thrombin Mutant D221aD222K
Length = 259
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 121 PDR--------ETAASLLQAGYKGRVTGWGNLKET 147
>pdb|1TQ0|B Chain B, Crystal Structure Of The Potent Anticoagulant Thrombin
Mutant W215aE217A IN FREE FORM
pdb|1TQ0|D Chain D, Crystal Structure Of The Potent Anticoagulant Thrombin
Mutant W215aE217A IN FREE FORM
pdb|1TQ7|B Chain B, Crystal Structure Of The Anticoagulant Thrombin Mutant
W215aE217A Bound To Ppack
Length = 257
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 121 PDR--------ETAASLLQAGYKGRVTGWGNLKET 147
>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1
Length = 424
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYD-KAEIKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ + + DIAL+KL + V F+++I P+CL
Sbjct: 226 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 285
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 286 PDR--------ETAASLLQAGYKGRVTGWGNLKET 312
>pdb|2OD3|B Chain B, Human Thrombin Chimera With Human Residues 184a, 186,
186a, 186b, 186c And 222 Replaced By Murine Thrombin
Equivalents
Length = 259
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 121 PDR--------ETAASLLQAGYKGRVTGWGNLKET 147
>pdb|2ZPS|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 3 From Chum
Salmon
Length = 222
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 227 EVKLGAHYLS-SQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
EV+LG H + ++ + + H Y I +DI L+KL + ++QP+ LP
Sbjct: 47 EVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP 106
Query: 286 IKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKFPGMS 326
A + TV+GWG +TA N L P +S
Sbjct: 107 S----SCAPAGTMCTVSGWGNTMSSTADKNKLQCLNIPILS 143
>pdb|2ZPQ|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum
Salmon
pdb|2ZPQ|B Chain B, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum
Salmon
Length = 222
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 227 EVKLGAHYLS-SQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
EV+LG H + ++ + + H Y I +DI L+KL + ++QP+ LP
Sbjct: 47 EVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP 106
Query: 286 IKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKFPGMS 326
A + TV+GWG +TA N L P +S
Sbjct: 107 S----SCAPAGTMCTVSGWGNTMSSTADKNKLQCLNIPILS 143
>pdb|1BBR|H Chain H, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1UCY|H Chain H, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|F Chain F, Thrombin:hirudin 51-65 Complex
pdb|1YCP|K Chain K, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
Length = 150
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 246 VEKTFLHEKYD-KAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAI-ATVAG 303
++K ++H +Y+ K + DIALLKL R ++ +++I P+CLP KQ V G
Sbjct: 81 LDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTG 140
Query: 304 WG--YYTYTT 311
WG T+TT
Sbjct: 141 WGNRRETWTT 150
>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 242
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 247 EKTFLHEKYD-KAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305
E F+HE Y A +DIAL+KL KV + I PICLP K+ I T +GWG
Sbjct: 71 EAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWG 130
>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-2
Length = 403
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 247 EKTFLHEKYD-KAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305
E F+HE Y A +DIAL+KL KV + I PICLP K+ I T +GWG
Sbjct: 232 EAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWG 291
>pdb|4FXG|H Chain H, Complement C4 In Complex With Masp-2
pdb|4FXG|J Chain J, Complement C4 In Complex With Masp-2
Length = 242
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 247 EKTFLHEKYD-KAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305
E F+HE Y A +DIAL+KL KV + I PICLP K+ I T +GWG
Sbjct: 71 EAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWG 130
>pdb|1SFQ|B Chain B, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack
pdb|1SFQ|E Chain E, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack
pdb|1SG8|B Chain B, Crystal Structure Of The Procoagulant Fast Form Of
Thrombin
pdb|1SG8|E Chain E, Crystal Structure Of The Procoagulant Fast Form Of
Thrombin
pdb|1SGI|B Chain B, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1SGI|E Chain E, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1SHH|B Chain B, Slow Form Of Thrombin Bound With Ppack
pdb|1SHH|E Chain E, Slow Form Of Thrombin Bound With Ppack
pdb|2HWL|B Chain B, Crystal Structure Of Thrombin In Complex With Fibrinogen
Gamma' Peptide
pdb|2HWL|D Chain D, Crystal Structure Of Thrombin In Complex With Fibrinogen
Gamma' Peptide
pdb|3BV9|B Chain B, Structure Of Thrombin Bound To The Inhibitor Fm19
Length = 259
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 121 PDR--------ETAASLLQAGYKGRVTGWGNLKET 147
>pdb|3JZ1|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E:na+
Form
pdb|3JZ2|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E Form
pdb|3QGN|B Chain B, The Allosteric E-E Equilibrium Is A Key Property Of The
Trypsin Fold
Length = 259
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQA--IATVAGWGYY--TYTTAISNAKNTL 320
P ++ QA V GWG T+T + + ++
Sbjct: 121 PDRET-AASLLQAGYKGRVTGWGPLKETWTANVGKGQPSV 159
>pdb|2A0Q|B Chain B, Structure Of Thrombin In 400 Mm Potassium Chloride
pdb|2A0Q|D Chain D, Structure Of Thrombin In 400 Mm Potassium Chloride
Length = 257
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 121 PDR--------ETAASLLQAGYKGRVTGWGNLKET 147
>pdb|2BVR|H Chain H, Human Thrombin Complexed With Fragment-based Small
Molecules Occupying The S1 Pocket
Length = 252
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQA--IATVAGWG 305
P ++ QA V GWG
Sbjct: 121 PDRET-AASLLQAGYKGRVTGWG 142
>pdb|3GIC|B Chain B, Structure Of Thrombin Mutant Delta(146-149e) In The Free
Form
Length = 250
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQA--IATVAGWG 305
P ++ QA V GWG
Sbjct: 121 PDRET-AASLLQAGYKGRVTGWG 142
>pdb|1IAU|A Chain A, Human Granzyme B In Complex With Ac-Iepd-Cho
Length = 227
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 228 VKLGAHYLSSQLNNAVY-PVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V LGAH + Q + PV++ H Y+ +DI LL+L RK + T +QP+ LP
Sbjct: 52 VTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPS 111
Query: 287 KQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKFPGMSLQ 328
+ Q Q +VAGWG T + +TL+ M++Q
Sbjct: 112 NKA-QVKPGQT-CSVAGWG---QTAPLGKHSHTLQEVKMTVQ 148
>pdb|1FQ3|A Chain A, Crystal Structure Of Human Granzyme B
pdb|1FQ3|B Chain B, Crystal Structure Of Human Granzyme B
Length = 227
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 228 VKLGAHYLSSQLNNAVY-PVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V LGAH + Q + PV++ H Y+ +DI LL+L RK + T +QP+ LP
Sbjct: 52 VTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPS 111
Query: 287 KQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKFPGMSLQ 328
+ Q Q +VAGWG T + +TL+ M++Q
Sbjct: 112 NKA-QVKPGQT-CSVAGWG---QTAPLGKHSHTLQEVKMTVQ 148
>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|B Chain B, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|C Chain C, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|D Chain D, Structure Of A Human Enteropeptidase Light Chain Variant
Length = 235
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 80/184 (43%), Gaps = 12/184 (6%)
Query: 230 LGAHYLSSQLNNAVYP--VEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIK 287
LG H S+ + P +++ ++ Y++ +DIA++ L KV +T++IQPI LP +
Sbjct: 57 LGLHMKSNLTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEE 116
Query: 288 QYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKFPGMSLQILQWFVDSYH---SIHLEN 344
Q ++AGWG Y ++ P +S + Q + Y+ ++
Sbjct: 117 N--QVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQMPEYNITENMICAG 174
Query: 345 YATEAAISNANNTLKFPGMSLQILQWFVDSYKLNSSLGAVAPTPKPQSGLFVYGVKFLQW 404
Y E I + P M + +WF+ +S G P + G++ +F +W
Sbjct: 175 Y-EEGGIDSCQGDSGGPLMCQENNRWFLAGV---TSFGYECALPN-RPGVYARVSRFTEW 229
Query: 405 LYWF 408
+ F
Sbjct: 230 IQSF 233
>pdb|1DLK|B Chain B, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To
A Peptidyl Chloromethyl Ketone Inhibitor
pdb|1DLK|D Chain D, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To
A Peptidyl Chloromethyl Ketone Inhibitor
Length = 230
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 246 VEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATV-AGW 304
+ K F + KY+ I +DI LLKL F+ + +CLP DFA V GW
Sbjct: 70 IAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSA---SDDFAAGTTCVTTGW 126
Query: 305 GYYTYTTA 312
G YT A
Sbjct: 127 GLTRYTNA 134
>pdb|2CGA|A Chain A, Bovine Chymotrypsinogen A. X-Ray Crystal Structure
Analysis And Refinement Of A New Crystal Form At 1.8
Angstroms Resolution
pdb|2CGA|B Chain B, Bovine Chymotrypsinogen A. X-Ray Crystal Structure
Analysis And Refinement Of A New Crystal Form At 1.8
Angstroms Resolution
pdb|1ACB|E Chain E, Crystal And Molecular Structure Of The Bovine
Alpha-Chymotrypsin-Eglin C Complex At 2.0 Angstroms
Resolution
pdb|1CGI|E Chain E, Three-Dimensional Structure Of The Complexes Between
Bovine ChymotrypsinogenA And Two Recombinant Variants Of
Human Pancreatic Secretory Trypsin Inhibitor
(Kazal-Type)
pdb|1CGJ|E Chain E, Three-Dimensional Structure Of The Complexes Between
Bovine ChymotrypsinogenA And Two Recombinant Variants Of
Human Pancreatic Secretory Trypsin Inhibitor
(Kazal-Type)
pdb|1EX3|A Chain A, Crystal Structure Of Bovine Chymotrypsinogen A
(Tetragonal)
pdb|1GL1|A Chain A, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL1|B Chain B, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL1|C Chain C, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL0|E Chain E, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-D2v, An Inhibitor From The Insect Locusta
Migratoria
pdb|1K2I|1 Chain 1, Crystal Structure Of Gamma-Chymotrypsin In Complex With 7-
Hydroxycoumarin
pdb|1P2M|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2M|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2N|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2N|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2O|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2O|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2Q|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2Q|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1OXG|A Chain A, Crystal Structure Of A Complex Formed Between Organic
Solvent Treated Bovine Alpha-Chymotrypsin And Its
Autocatalytically Produced Highly Potent 14-Residue
Peptide At 2.2 Resolution
pdb|1T7C|A Chain A, Crystal Structure Of The P1 Glu Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T7C|C Chain C, Crystal Structure Of The P1 Glu Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8L|A Chain A, Crystal Structure Of The P1 Met Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8L|C Chain C, Crystal Structure Of The P1 Met Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8M|A Chain A, Crystal Structure Of The P1 His Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8M|C Chain C, Crystal Structure Of The P1 His Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8N|A Chain A, Crystal Structure Of The P1 Thr Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8N|C Chain C, Crystal Structure Of The P1 Thr Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8O|A Chain A, Crystal Structure Of The P1 Trp Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8O|C Chain C, Crystal Structure Of The P1 Trp Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1CHG|A Chain A, Chymotrypsinogen,2.5 Angstroms Crystal Structure,
Comparison With Alpha-Chymotrypsin,And Implications For
Zymogen Activation
pdb|1GCD|A Chain A, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2Y6T|A Chain A, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|B Chain B, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|C Chain C, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|D Chain D, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|3T62|A Chain A, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
pdb|3T62|B Chain B, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
pdb|3T62|C Chain C, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
Length = 245
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 246 VEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATV-AGW 304
+ K F + KY+ I +DI LLKL F+ + +CLP DFA V GW
Sbjct: 85 IAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSA---SDDFAAGTTCVTTGW 141
Query: 305 GYYTYTTA 312
G YT A
Sbjct: 142 GLTRYTNA 149
>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-1
Length = 406
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 207 DPEKAAESQLTIVRQVRFHAEVKLGAHY-LSSQLNNAVYPVEKTFLHEKYDKAEIKSDIA 265
DPE ++ F ++ LG H+ L S N V+ T LH +YD ++D+A
Sbjct: 204 DPEDPTLRDSDLLSPSDF--KIILGKHWRLRSDENEQHLGVKHTTLHPQYDPNTFENDVA 261
Query: 266 LLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305
L++L F+ PICLP + Q + A I V+GWG
Sbjct: 262 LVELLESPVLNAFVMPICLP--EGPQQEGAMVI--VSGWG 297
>pdb|2HNT|E Chain E, Crystallographic Structure Of Human Gamma-Thrombin
Length = 81
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 246 VEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQA--IATVA 302
+EK ++H +Y+ E + DIAL+KL + V F+++I P+CLP ++ QA V
Sbjct: 8 LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRET-AASLLQAGYKGRVT 66
Query: 303 GWG 305
GWG
Sbjct: 67 GWG 69
>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine
(S434a-T475a-C482s-K437a Mutant)
pdb|1ZPB|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 4-Methyl-Pentanoic Acid {1-[4-
Guanidino-1-(Thiazole-2-Carbonyl)-Butylcarbamoyl]-2-
Methyl- Propyl}-Amide
pdb|1ZPC|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
2-[2-(3-Chloro-Phenyl)-2-Hydroxy-
Acetylamino]-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]- 3-Methyl-Butyramide
pdb|2FDA|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Coagulation Factor Xia In Complex With
Alpha-Ketothiazole Arginine Derived Ligand
pdb|1ZMJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With 4-(Guanidinomethyl)-Phenylboronic Acid
pdb|1ZML|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With (R)-1-(4-(4-(Hydroxymethyl)-1,3,2-
Dioxaborolan-2-Yl)phenethyl)guanidine
pdb|1ZMN|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
(R)-1-(4-(4-(Hydroxymethyl)-1,3,
2-Dioxaborolan-2-Yl)phenyl)guanidine
pdb|1ZOM|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With A Peptidomimetic Inhibitor
pdb|1ZSJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
N-(7-Carbamimidoyl-Naphthalen-1-
Yl)-3-Hydroxy-2-Methyl-Benzamide
pdb|1ZSK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
6-Carbamimidoyl-4-(3-Hydroxy-2-
Methyl-Benzoylamino)-Naphthalene-2-Carboxylic Acid
Methyl Ester
pdb|1ZTJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Benzylamino-2-
Methylsulfanyl-6-Oxo-6h-Pyrimidin-1-Yl)-N-[4-Guanidino-
1- (Thiazole-2-Carbonyl)-Butyl]-Acetamide
pdb|1ZTK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Amino-6-Oxo-2-M-Tolyl-6h-
Pyrimidin-1-Yl)-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]-Acetamide
pdb|1ZTL|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With N-[4-Guanidino-1-(Thiazole-2-
Carbonyl)-Butyl]-2-{6-Oxo-5-[(Quinolin-8-Ylmethyl)-
Amino]- 2-M-Tolyl-6h-Pyrimidin-1-Yl}-Acetamide
Length = 238
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 240 NNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIA 299
+ + + V++ +H++Y AE DIALLKL V + + +PI LP K +
Sbjct: 70 DTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKG--DRNVIYTDC 127
Query: 300 TVAGWGYYTYTTAISNAKNTLKFP 323
V GWGY I N K P
Sbjct: 128 WVTGWGYRKLRDKIQNTLQKAKIP 151
>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Kunitz Protease Inhibitor
Domain Of Protease Nexin Ii
Length = 237
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 240 NNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIA 299
+ + + V++ +H++Y AE DIALLKL V + + +PI LP K +
Sbjct: 70 DTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKG--DRNVIYTDC 127
Query: 300 TVAGWGYYTYTTAISNAKNTLKFP 323
V GWGY I N K P
Sbjct: 128 WVTGWGYRKLRDKIQNTLQKAKIP 151
>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With
2-Guanidino-1-(4-(4,4,5,5-
Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl
Nicotinate
Length = 237
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 240 NNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIA 299
+ + + V++ +H++Y AE DIALLKL V + + +PI LP K +
Sbjct: 70 DTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKG--DRNVIYTDC 127
Query: 300 TVAGWGYYTYTTAISNAKNTLKFP 323
V GWGY I N K P
Sbjct: 128 WVTGWGYRKLRDKIQNTLQKAKIP 151
>pdb|2GP9|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A Self-
Inhibited Conformation
pdb|3BEI|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A
Self_inhibited Conformation
pdb|3BEF|B Chain B, Crystal Structure Of Thrombin Bound To The Extracellular
Fragment Of Par1
pdb|3BEF|E Chain E, Crystal Structure Of Thrombin Bound To The Extracellular
Fragment Of Par1
pdb|3QDZ|B Chain B, Crystal Structure Of The Human Thrombin Mutant D102n In
Complex With The Extracellular Fragment Of Human Par4.
pdb|3QDZ|D Chain D, Crystal Structure Of The Human Thrombin Mutant D102n In
Complex With The Extracellular Fragment Of Human Par4
Length = 259
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + +IAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRNIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNT 319
P + + A++ GY T N K T
Sbjct: 121 PDR--------ETAASLLQAGYKGRVTGWGNLKET 147
>pdb|1FIW|A Chain A, Three-Dimensional Structure Of Beta-Acrosin From Ram
Spermatozoa
Length = 290
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 230 LGAHYLSSQLNNAVYP------VEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPIC 283
GA + N V P VEK +HEKY + +DIAL+K+ V +FI P C
Sbjct: 62 FGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGPGC 121
Query: 284 LPIKQYWQHDFAQAIATVAGWGY 306
LP + Q VAGWG+
Sbjct: 122 LPQFRAGPPRVPQT-CWVAGWGF 143
>pdb|3GOV|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-1
pdb|4DJZ|B Chain B, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
pdb|4DJZ|D Chain D, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 251
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 227 EVKLGAHY-LSSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
++ LG H+ L S N V+ T LH +YD ++D+AL++L F+ PICLP
Sbjct: 67 KIILGKHWRLRSDENEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFVMPICLP 126
Query: 286 IKQYWQHDFAQAIATVAGWG 305
Q + A I V+GWG
Sbjct: 127 EGP--QQEGAMVI--VSGWG 142
>pdb|2ZPR|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum
Salmon
pdb|2ZPR|B Chain B, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum
Salmon
Length = 222
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 228 VKLGAHYLS-SQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V+LG H + ++ + + H Y I +DI L+KL + ++QP+ LP
Sbjct: 48 VRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPS 107
Query: 287 KQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKFPGMS 326
A + TV+GWG +TA + L P +S
Sbjct: 108 ----SCAPAGTMCTVSGWGNTMSSTADGDKLQCLNIPILS 143
>pdb|1FI8|A Chain A, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd]
pdb|1FI8|B Chain B, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd]
Length = 228
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 227 EVKLGAHYLSSQLN-NAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V LGAH + Q + PV K H Y+ I +DI LLKL K + ++ ++P+ LP
Sbjct: 52 QVTLGAHNIKEQEKMQQIIPVVKIIPHPAYNSKTISNDIMLLKLKSKAKRSSAVKPLNLP 111
Query: 286 IKQYWQHDFAQAIATVAGWG 305
+ + VAGWG
Sbjct: 112 RRNVKVK--PGDVCYVAGWG 129
>pdb|3FZZ|A Chain A, Structure Of Grc
pdb|3FZZ|B Chain B, Structure Of Grc
Length = 227
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 228 VKLGAHYLSS-QLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V LGAH + + + + PV K H Y+ + +DI LLKL R + T ++P+ LP
Sbjct: 53 VTLGAHNIKAKEETQQIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPR 112
Query: 287 KQYWQHDFAQAIATVAGWGYYT 308
+ H VAGWG T
Sbjct: 113 RN--AHVKPGDECYVAGWGKVT 132
>pdb|3G01|A Chain A, Structure Of Grc Mutant E192rE193G
pdb|3G01|B Chain B, Structure Of Grc Mutant E192rE193G
Length = 227
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 228 VKLGAHYLSS-QLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V LGAH + + + + PV K H Y+ + +DI LLKL R + T ++P+ LP
Sbjct: 53 VTLGAHNIKAKEETQQIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPR 112
Query: 287 KQYWQHDFAQAIATVAGWGYYT 308
+ H VAGWG T
Sbjct: 113 RN--AHVKPGDECYVAGWGKVT 132
>pdb|1MTN|B Chain B, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1MTN|F Chain F, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1AB9|B Chain B, Crystal Structure Of Bovine Gamma-Chymotrypsin
pdb|1CA0|B Chain B, Bovine Chymotrypsin Complexed To Appi
pdb|1CA0|G Chain G, Bovine Chymotrypsin Complexed To Appi
pdb|1CBW|B Chain B, Bovine Chymotrypsin Complexed To Bpti
pdb|1CBW|G Chain G, Bovine Chymotrypsin Complexed To Bpti
pdb|1AFQ|B Chain B, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed
With A Synthetic Inhibitor
pdb|1VGC|B Chain B, Gamma-Chymotrypsin L-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|2VGC|B Chain B, Gamma-Chymotrypsin D-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|3VGC|B Chain B, Gamma-Chymotrypsin L-Naphthyl-1-Acetamido Boronic Acid
Acid Inhibitor Complex
pdb|4VGC|B Chain B, Gamma-Chymotrypsin D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1HJA|B Chain B, Lys 18 Variant Of Turkey Ovomucoid Inhibitor Third Domain
Complexed With Alpha-Chymotrypsin
pdb|1GG6|B Chain B, Crystal Stucture Of Gamma Chymotrypsin With N-Acetyl-
Phenylalanine Trifluoromethyl Ketone Bound At The Active
Site
pdb|1GGD|B Chain B, Crystal Stucture Of Gamma Chymotrypsin With
N-Acetyl-Leucil- Phenylalanine Aldehyde Bound At The
Active Site
pdb|1N8O|B Chain B, Crystal Structure Of A Complex Between Bovine Chymotrypsin
And Ecotin
pdb|1YPH|C Chain C, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|1YPH|D Chain D, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|2P8O|B Chain B, Crystal Structure Of A Benzohydroxamic AcidVANADATE
Complex Bound To Chymotrypsin A
pdb|1GMH|F Chain F, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2CHA|B Chain B, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2CHA|F Chain F, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2GCH|F Chain F, Refined Crystal Structure Of Gamma-chymotrypsin At 1.9
Angstroms Resolution
pdb|4GCH|F Chain F, Structure And Activity Of Two Photoreversible Cinnamates
Bound To Chymotrypsin
pdb|5GCH|F Chain F, Chemistry Of Caged Enzymes II. Photoactivation Of
Inhibited Chymotrypsin
pdb|6GCH|F Chain F, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|7GCH|F Chain F, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|1CHO|F Chain F, Crystal And Molecular Structures Of The Complex Of Alpha-
Chymotrypsin With Its Inhibitor Turkey Ovomucoid Third
Domain At 1.8 Angstroms Resolution
pdb|1GHA|F Chain F, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|1GMC|F Chain F, The X-Ray Crystal Structure Of The Tetrahedral
Intermediate Of Gamma- Chymotrypsin In Hexane
pdb|1GMD|F Chain F, X-Ray Crystal Structure Of Gamma-Chymotrypsin In Hexane
pdb|3GCT|F Chain F, Structure Of Gamma-Chymotrypsin In The Range pH 2.0 To pH
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low pH
pdb|4CHA|B Chain B, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|4CHA|F Chain F, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|5CHA|B Chain B, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|5CHA|F Chain F, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|6CHA|B Chain B, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|6CHA|F Chain F, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|8GCH|F Chain F, Gamma-Chymotrypsin Is A Complex Of Alpha-Chymotrypsin With
Its Own Autolysis Products
pdb|3BG4|B Chain B, The Crystal Structure Of Guamerin In Complex With
Chymotrypsin And The Development Of An Elastase-Specific
Inhibitor
pdb|1GCT|B Chain B, Is Gamma-Chymotrypsin A Tetrapeptide Acyl-Enzyme Adduct Of
Gamma- Chymotrypsin?
pdb|2GCT|B Chain B, Structure Of Gamma-Chymotrypsin In The Range Ph 2.0 To Ph
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low Ph
pdb|1GHB|F Chain F, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|2GMT|B Chain B, Three-Dimensional Structure Of Chymotrypsin Inactivated
With (2s) N- Acetyl-L-Alanyl-L-Phenylalanyl-Chloroethyl
Ketone: Implications For The Mechanism Of Inactivation
Of Serine Proteases By Chloroketones
pdb|3GCH|B Chain B, Chemistry Of Caged Enzymes. Binding Of Photoreversible
Cinnamates To Chymotrypsin
pdb|3RU4|D Chain D, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
Length = 131
Score = 42.7 bits (99), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 246 VEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATV-AGW 304
+ K F + KY+ I +DI LLKL F+ + +CLP DFA V GW
Sbjct: 70 IAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSA---SDDFAAGTTCVTTGW 126
Query: 305 GYYTY 309
G Y
Sbjct: 127 GLTRY 131
>pdb|1G5B|A Chain A, Bacteriophage Lambda SerTHR PROTEIN PHOSPHATASE
pdb|1G5B|B Chain B, Bacteriophage Lambda SerTHR PROTEIN PHOSPHATASE
pdb|1G5B|C Chain C, Bacteriophage Lambda SerTHR PROTEIN PHOSPHATASE
Length = 221
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 14/90 (15%)
Query: 60 ICGDIHGQYLDLLMLFDYGKYPPKSRYLF-LGDYVDRGSNSLETICLLLAYKIKYPGMFH 118
+ GD+HG Y +L+ D + K L +GD VDRG+ ++E CL L I +P F
Sbjct: 17 VVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVE--CLEL---ITFP-WFR 70
Query: 119 LLRGNHECANINKVYGFYDECKRRYNVKLW 148
+RGNHE I D R NV W
Sbjct: 71 AVRGNHEQMMI-------DGLSERGNVNHW 93
>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 251
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 246 VEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
V+ F+HEK++ +++DIAL+KL V+ + IQ CLP
Sbjct: 88 VDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLP 127
>pdb|2F91|A Chain A, 1.2a Resolution Structure Of A Crayfish Trypsin Complexed
With A Peptide Inhibitor, Sgti
Length = 237
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 243 VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVA 302
+ V K LHE +D + +DI+LLKL + F + + PI LP Q A V
Sbjct: 76 IITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALP----EQGHTATGDVIVT 131
Query: 303 GWG 305
GWG
Sbjct: 132 GWG 134
>pdb|1NN6|A Chain A, Human Pro-Chymase
Length = 228
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 3/116 (2%)
Query: 228 VKLGAHYLSSQLNN-AVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V LGAH ++ + + V K F H KY+ + + DI LLKL K T + LP
Sbjct: 55 VTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVG--TLPF 112
Query: 287 KQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKFPGMSLQILQWFVDSYHSIHL 342
+ + VAGWG S+ +K M Q F D H++ L
Sbjct: 113 PSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQL 168
>pdb|4AFQ|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFQ|B Chain B, Human Chymase - Fynomer Complex
pdb|4AFS|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFU|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFU|B Chain B, Human Chymase - Fynomer Complex
pdb|4AFZ|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFZ|B Chain B, Human Chymase - Fynomer Complex
pdb|4AG1|A Chain A, Human Chymase - Fynomer Complex
pdb|4AG2|A Chain A, Human Chymase - Fynomer Complex
pdb|4AG2|B Chain B, Human Chymase - Fynomer Complex
Length = 226
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 3/116 (2%)
Query: 228 VKLGAHYLSSQLNN-AVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V LGAH ++ + + V K F H KY+ + + DI LLKL K T + LP
Sbjct: 53 VTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVG--TLPF 110
Query: 287 KQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKFPGMSLQILQWFVDSYHSIHL 342
+ + VAGWG S+ +K M Q F D H++ L
Sbjct: 111 PSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQL 166
>pdb|1PJP|A Chain A, The 2.2 A Crystal Structure Of Human Chymase In Complex
With Succinyl- Ala-Ala-Pro-Phe-Chloromethylketone
pdb|1T31|A Chain A, A Dual Inhibitor Of The Leukocyte Proteases Cathepsin G
And Chymase With Therapeutic Efficacy In Animals Models
Of Inflammation
pdb|2HVX|A Chain A, Discovery Of Potent, Orally Active, Nonpeptide Inhibitors
Of Human Mast Cell Chymase By Using Structure-Based Drug
Design
pdb|3S0N|A Chain A, Crystal Structure Of Human Chymase With Benzimidazolone
Inhibitor
Length = 226
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 7/118 (5%)
Query: 228 VKLGAHYLSSQLNN-AVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V LGAH ++ + + V K F H KY+ + + DI LLKL K T + + P
Sbjct: 53 VTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPS 112
Query: 287 KQYWQHDFAQA--IATVAGWGYYTYTTAISNAKNTLKFPGMSLQILQWFVDSYHSIHL 342
Q +F + VAGWG S+ +K M Q F D H++ L
Sbjct: 113 ----QKNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQL 166
>pdb|1KLT|A Chain A, Crystal Structure Of Pmsf-Treated Human Chymase At 1.9
Angstroms Resolution
Length = 226
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 3/116 (2%)
Query: 228 VKLGAHYLSSQLNN-AVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V LGAH ++ + + V K F H KY+ + + DI LLKL K T + LP
Sbjct: 53 VTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVG--TLPF 110
Query: 287 KQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKFPGMSLQILQWFVDSYHSIHL 342
+ + VAGWG S+ +K M Q F D H++ L
Sbjct: 111 PSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQL 166
>pdb|3N7O|A Chain A, X-Ray Structure Of Human Chymase In Complex With Small
Molecule Inhibitor
Length = 226
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 3/116 (2%)
Query: 228 VKLGAHYLSSQLNN-AVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V LGAH ++ + + V K F H KY+ + + DI LLKL K T + LP
Sbjct: 53 VTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVG--TLPF 110
Query: 287 KQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKFPGMSLQILQWFVDSYHSIHL 342
+ + VAGWG S+ +K M Q F D H++ L
Sbjct: 111 PSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQL 166
>pdb|3RP2|A Chain A, The Structure Of Rat Mast Cell Protease Ii At
1.9-Angstroms Resolution
pdb|3RP2|B Chain B, The Structure Of Rat Mast Cell Protease Ii At
1.9-Angstroms Resolution
Length = 224
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 228 VKLGAHYLSS-QLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V LGAH + + VEK +HE Y+ DI LLKL +KV+ T + + LP
Sbjct: 53 VILGAHDVRKRESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPS 112
Query: 287 KQYWQHDFAQAIATVAGWG 305
+ H A A AGWG
Sbjct: 113 PSDFIHPGAMCWA--AGWG 129
>pdb|2JET|B Chain B, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g)
Chymotrypsin
Length = 128
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 236 SSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFA 295
S + N V + + F + K++ +++DI LLKL QF+ + +CLP DF
Sbjct: 57 SDEENIQVLKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVCLP---NVDDDFP 113
Query: 296 QA-IATVAGWGYYTY 309
+ GWG Y
Sbjct: 114 PGTVCATTGWGKTKY 128
>pdb|1KIG|H Chain H, Bovine Factor Xa
Length = 241
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 240 NNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDF-AQAI 298
N + VE T H ++ K DIA+L+L ++F + P CLP K + + Q
Sbjct: 65 NEMAHEVEMTVKHSRFVKETYDFDIAVLRLKTPIRFRRNVAPACLPEKDWAEATLMTQKT 124
Query: 299 ATVAGWGYYTYTTAISNAKNTLKFP 323
V+G+G +S+ L+ P
Sbjct: 125 GIVSGFGRTHEKGRLSSTLKMLEVP 149
>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional
Structure Of The Catalytic Domain Of Human Plasma
Kallikrein: Implications For Structure-Based Design Of
Protease Inhibitors
Length = 241
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 246 VEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305
+++ +H+ Y +E DIAL+KL +++T F +PI LP K + T GWG
Sbjct: 76 IKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSKGDTSTIYTNCWVT--GWG 133
Query: 306 YYTYTTAISNAKNTLKFP 323
+ I N + P
Sbjct: 134 FSKEKGEIQNILQKVNIP 151
>pdb|1FIZ|A Chain A, Three Dimensional Structure Of Beta-Acrosin From Boar
Spermatozoa
Length = 263
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 230 LGAHYLSSQLNNAVYP------VEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPIC 283
GA+ + N V P VE+ +HEKY +DIAL+K+ V FI P C
Sbjct: 62 FGANEVVWGSNKPVKPPLQERFVEEIIIHEKYVSGLEINDIALIKITPPVPCGPFIGPGC 121
Query: 284 LPIKQYWQHDFAQAIATVAGWGY 306
LP + A V GWGY
Sbjct: 122 LPQFKA-GPPRAPQTCWVTGWGY 143
>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of
An Inhibitory Antibody
pdb|3T2N|B Chain B, Human Hepsin Protease In Complex With The Fab Fragment Of
An Inhibitory Antibody
Length = 372
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 246 VEKTFLHEKY------DKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIA 299
V+ H Y + E +DIAL+ L + T +IQP+CLP Q I
Sbjct: 189 VQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAG--QALVDGKIC 246
Query: 300 TVAGWGYYTY 309
TV GWG Y
Sbjct: 247 TVTGWGNTQY 256
>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The
Transmembrane Serine Protease Hepsin With Covalently
Bound Preferred Substrate
Length = 372
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 246 VEKTFLHEKY------DKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIA 299
V+ H Y + E +DIAL+ L + T +IQP+CLP Q I
Sbjct: 189 VQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAG--QALVDGKIC 246
Query: 300 TVAGWGYYTY 309
TV GWG Y
Sbjct: 247 TVTGWGNTQY 256
>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional
Structure Of The Catalytic Domain Of Human Plasma
Kallikrein: Implications For Structure-Based Design Of
Protease Inhibitors
Length = 241
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 246 VEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305
+++ +H+ Y +E DIAL+KL + +T F +PI LP K + T GWG
Sbjct: 76 IKEIIIHQNYKVSEGNHDIALIKLQAPLNYTEFQKPISLPSKGDTSTIYTNCWVT--GWG 133
Query: 306 YYTYTTAISNAKNTLKFP 323
+ I N + P
Sbjct: 134 FSKEKGEIQNILQKVNIP 151
>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (ala190 Upa)
pdb|1O5F|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1P57|B Chain B, Extracellular Domain Of Human Hepsin
Length = 255
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 256 DKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWGYYTY 309
+ E +DIAL+ L + T +IQP+CLP Q I TV GWG Y
Sbjct: 88 NSEENSNDIALVHLSSPLPLTEYIQPVCLPAAG--QALVDGKICTVTGWGNTQY 139
>pdb|1YM0|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component B: A Novel, Glycosylated Two-chained Trypsin
Length = 238
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 244 YPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAG 303
+ V+ F++E YD A +++D++++K + F + PIC P +D+ + +G
Sbjct: 72 HDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICAPDP---ANDYVYRKSQCSG 128
Query: 304 WG 305
WG
Sbjct: 129 WG 130
>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 254
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Query: 230 LGAHYLSSQLNN-AVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQ 288
LG H LS + V + + Y DIALL+L + V T+ + P+CLP +
Sbjct: 56 LGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERT 115
Query: 289 YWQHDFAQA-IATVAGWGYYTYTTAISNAKNTLKFPGMSLQ 328
+ + A + V+GWG A + L P + Q
Sbjct: 116 FSERTLAFVRFSLVSGWGQLLDRGATALVLQVLNVPRLMTQ 156
>pdb|3P8G|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Benzamidine
pdb|3P8F|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Sfti-1
Length = 241
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 246 VEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIAT-VAGW 304
+++ H ++ DIALL+L + ++++ ++PICLP H F A V GW
Sbjct: 80 LKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLPDA---SHVFPAGKAIWVTGW 136
Query: 305 GYYTY 309
G+ Y
Sbjct: 137 GHTQY 141
>pdb|2EEK|A Chain A, Crystal Structure Of Atlantic Cod Trypsin Complexed With
Benzamidine
Length = 220
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 228 VKLGAHYLSSQLNNAVYPVEKTFL-HEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V+LG H++ Y + + H Y I +DI L+KL + ++ + LP
Sbjct: 48 VRLGEHHIRVNEGTEQYISSSSVIRHPNYSSYNINNDIMLIKLTKPATLNQYVHAVALPT 107
Query: 287 KQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKFPGMS 326
+ + TV+GWG + A + L P +S
Sbjct: 108 ECAAD----ATMCTVSGWGNTMSSVADGDKLQCLSLPILS 143
>pdb|1EAW|A Chain A, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti
(Aprotinin) Complex
pdb|1EAW|C Chain C, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti
(Aprotinin) Complex
pdb|1EAX|A Chain A, Crystal Structure Of Mtsp1 (Matriptase)
pdb|2GV6|A Chain A, Crystal Structure Of Matriptase With Inhibitor Cj-730
pdb|2GV7|A Chain A, Structure Of Matriptase In Complex With Inhibitor Cj-672
Length = 241
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 246 VEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIAT-VAGW 304
+++ H ++ DIALL+L + ++++ ++PICLP H F A V GW
Sbjct: 80 LKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLPDA---SHVFPAGKAIWVTGW 136
Query: 305 GYYTY 309
G+ Y
Sbjct: 137 GHTQY 141
>pdb|1DAN|H Chain H, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1QFK|H Chain H, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
pdb|1CVW|H Chain H, Crystal Structure Of Active Site-inhibited Human
Coagulation Factor Viia (des-gla)
pdb|1FAK|H Chain H, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1DVA|H Chain H, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|I Chain I, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1JBU|H Chain H, Coagulation Factor Vii Zymogen (Egf2PROTEASE) IN COMPLEX
WITH Inhibitory Exosite Peptide A-183
pdb|1KLI|H Chain H, Cofactor-And Substrate-Assisted Activation Of Factor Viia
pdb|1KLJ|H Chain H, Crystal Structure Of Uninhibited Factor Viia
pdb|1J9C|H Chain H, Crystal Structure Of Tissue Factor-Factor Viia Complex
pdb|1W0Y|H Chain H, Tf7a_3771 Complex
pdb|1YGC|H Chain H, Short Factor Viia With A Small Molecule Inhibitor
pdb|1Z6J|H Chain H, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|1W2K|H Chain H, Tf7a_4380 Complex
pdb|1WQV|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1W7X|H Chain H, Factor7- 413 Complex
pdb|1W8B|H Chain H, Factor7 - 413 Complex
pdb|1WSS|H Chain H, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|H Chain H, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2B7D|H Chain H, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|H Chain H, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|H Chain H, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2A2Q|H Chain H, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AER|H Chain H, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2AEI|H Chain H, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2FIR|H Chain H, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|H Chain H, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2FLR|H Chain H, Novel 5-azaindole Factor Viia Inhibitors
pdb|2B8O|H Chain H, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2PUQ|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
pdb|2EC9|H Chain H, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|2ZP0|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|H Chain H, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
pdb|3TH2|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|1O5D|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2BZ6|H Chain H, Orally Available Factor7a Inhibitor
pdb|4ISI|H Chain H, Structure Of Factor Viia In Complex With The Inhibitor
(6s)-n-(4-
Carbamimidoylbenzyl)-1-chloro-3-(cyclobutylamino)-8,
8-diethyl-4-oxo-
4,6,7,8-tetrahydropyrrolo[1,2-a]pyrazine-6-carboxamide
Length = 254
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 230 LGAHYLSSQLNN-AVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQ 288
LG H LS + V + + Y DIALL+L + V T+ + P+CLP +
Sbjct: 56 LGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERT 115
Query: 289 YWQHDFAQA-IATVAGWG 305
+ + A + V+GWG
Sbjct: 116 FSERTLAFVRFSLVSGWG 133
>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex
Length = 254
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 236 SSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDF- 294
+ + AV+ VE H ++ K DIA+L+L + F + P CLP + + +
Sbjct: 61 AEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLM 120
Query: 295 AQAIATVAGWG 305
Q V+G+G
Sbjct: 121 TQKTGIVSGFG 131
>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
Length = 255
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 240 NNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDF-AQAI 298
AV+ VE H ++ K DIA+L+L + F + P CLP + + + Q
Sbjct: 65 GEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKT 124
Query: 299 ATVAGWG 305
V+G+G
Sbjct: 125 GIVSGFG 131
>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFU|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
pdb|1NFW|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|B Chain B, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|B Chain B, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|B Chain B, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|B Chain B, Crystal Structure Of Fxa In Complex With 45.
pdb|1P0S|H Chain H, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
pdb|2BOH|B Chain B, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|A Chain A, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|A Chain A, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|A Chain A, Factor Xa Inhibitor Complex
pdb|2VH0|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|A Chain A, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|4A7I|B Chain B, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 254
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 240 NNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDF-AQAI 298
AV+ VE H ++ K DIA+L+L + F + P CLP + + + Q
Sbjct: 65 GEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKT 124
Query: 299 ATVAGWG 305
V+G+G
Sbjct: 125 GIVSGFG 131
>pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
Inhibitor
pdb|1LO6|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
Inhibitor At 1.56 A Resolution
Length = 223
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 216 LTIVRQVRFHAEVKLGAHYL----SSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGR 271
LT + + +V LG H L SSQ ++V + +H YD A DI LL+L R
Sbjct: 37 LTAAHCKKPNLQVFLGKHNLRQRESSQEQSSVV---RAVIHPDYDAASHDQDIMLLRLAR 93
Query: 272 KVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305
+ + IQP LP+++ + + GWG
Sbjct: 94 PAKLSELIQP--LPLERDCSANTTS--CHILGWG 123
>pdb|2RDL|A Chain A, Hamster Chymase 2
pdb|2RDL|B Chain B, Hamster Chymase 2
Length = 226
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 2/97 (2%)
Query: 246 VEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305
VEK F H KYD + +DI LLKL K T + LPI + GWG
Sbjct: 72 VEKQFPHPKYDDRLVLNDIMLLKLKEKANLTLGVG--TLPISAKSNSIPPGRVCRAVGWG 129
Query: 306 YYTYTTAISNAKNTLKFPGMSLQILQWFVDSYHSIHL 342
S+ +K + Q + F D + L
Sbjct: 130 RTNVNEPPSDTLQEVKMRILDPQACKHFEDFHQEPQL 166
>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|D Chain D, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|B Chain B, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|D Chain D, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|B Chain B, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|D Chain D, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|B Chain B, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 238
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 240 NNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDF-AQAI 298
AV+ VE H ++ K DIA+L+L + F + P CLP + + + Q
Sbjct: 65 GEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKT 124
Query: 299 ATVAGWG 305
V+G+G
Sbjct: 125 GIVSGFG 131
>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21
pdb|2BQ7|B Chain B, Crystal Structure Of Factor Xa In Complex With 43
pdb|2BQW|B Chain B, Crystal Structure Of Factor Xa In Complex With Compound 45
Length = 249
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 242 AVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDF-AQAIAT 300
AV+ VE H ++ K DIA+L+L + F + P CLP + + + Q
Sbjct: 82 AVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGI 141
Query: 301 VAGWG 305
V+G+G
Sbjct: 142 VSGFG 146
>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|D Chain D, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1G2L|A Chain A, Factor Xa Inhibitor Complex
pdb|1G2M|A Chain A, Factor Xa Inhibitor Complex
pdb|1IOE|A Chain A, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|A Chain A, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|A Chain A, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|A Chain A, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|A Chain A, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|A Chain A, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|A Chain A, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|A Chain A, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|A Chain A, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|A Chain A, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|A Chain A, Human Coagulation Factor Xa In Complex With M55192
pdb|2P3F|H Chain H, Crystal Structure Of The Factor XaNAP5 COMPLEX
Length = 235
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 240 NNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDF-AQAI 298
AV+ VE H ++ K DIA+L+L + F + P CLP + + + Q
Sbjct: 65 GEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKT 124
Query: 299 ATVAGWG 305
V+G+G
Sbjct: 125 GIVSGFG 131
>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031)
Complexed With Factor Xa
pdb|1Z6E|A Chain A, Factor Xa In Complex With The Inhibitor
1-(3'-Amino-1,2-Benzisoxazol-
5'-Yl)-N-(4-(2'-((Dimethylamino)methyl)-1h-Imidazol-1-
Yl)-2-
Fluorophenyl)-3-(Trifluoromethyl)-1h-Pyrazole-5-
Carboxamide (Razaxaban; Dpc906; Bms-561389)
pdb|2BMG|B Chain B, Crystal Structure Of Factor Xa In Complex With 50
pdb|2FZZ|A Chain A, Factor Xa In Complex With The Inhibitor 1-(3-Amino-1,2-
Benzisoxazol-5-Yl)-6-(2'-(((3r)-3-Hydroxy-1-
Pyrrolidinyl)
Methyl)-4-Biphenylyl)-3-(Trifluoromethyl)-1,4,5,6-
Tetrahydro-7h-Pyrazolo[3,4-C]pyridin-7-One
pdb|2G00|A Chain A, Factor Xa In Complex With The Inhibitor 3-(6-(2'-
((Dimethylamino)methyl)-4-Biphenylyl)-7-Oxo-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3,4-
C]pyridin-1-Yl)benzamide
pdb|2P93|A Chain A, Factor Xa In Complex With The Inhibitor
5-Chloro-N-(2-(4-(2-
Oxopyridin-1(2h)-Yl)benzamido)ethyl)thiophene-2-
Carboxamide
pdb|2P94|A Chain A, Factor Xa In Complex With The Inhibitor
3-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido)cyclohexyl)-1h-
Indole-6-Carboxamide
pdb|2P95|A Chain A, Factor Xa In Complex With The Inhibitor
5-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido) Cyclopentyl)
Thiophene-2-Carboxamide
pdb|2PR3|A Chain A, Factor Xa Inhibitor
pdb|2Q1J|A Chain A, The Discovery Of Glycine And Related Amino Acid-Based
Factor Xa Inhibitors
pdb|2P16|A Chain A, Factor Xa In Complex With The Inhibitor Apixaban (Bms-
562247) Aka 1-(4-Methoxyphenyl)-7-Oxo-6-(4-(2-Oxo-1-
Piperidinyl)phenyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3, 4-
C]pyridine-3-Carboxamide
pdb|2RA0|A Chain A, X-Ray Structure Of Fxa In Complex With 7-Fluoroindazole
pdb|2PHB|A Chain A, An Orally Efficacious Factor Xa Inhibitor
pdb|3CEN|A Chain A, Factor Xa In Complex With The Inhibitor
N-(2-(((5-Chloro-2- Pyridinyl)
Amino)sulfonyl)phenyl)-4-(2-Oxo-1(2h)-
Pyridinyl)benzamide
pdb|3CS7|A Chain A, Factor Xa In Complex With The Inhibitor
1-(4-Methoxyphenyl)-
6-(4-(1-(Pyrrolidin-1-Ylmethyl)cyclopropyl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|2W26|A Chain A, Factor Xa In Complex With Bay59-7939
pdb|2W3I|A Chain A, Crystal Structure Of Fxa In Complex With 4,4-disubstituted
Pyrrolidine-1,2-dicarboxamide Inhibitor 2
pdb|2W3K|A Chain A, Crystal Structure Of Fxa In Complex With 4,4-Disubstituted
Pyrrolidine-1,2-Dicarboxamide Inhibitor 1
pdb|3FFG|A Chain A, Factor Xa In Complex With The Inhibitor (R)-6-(2'-((3-
Hydroxypyrrolidin-1-Yl)methyl)biphenyl-4-Yl)-1-(3-(5-
Oxo-4, 5-Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|3KQB|A Chain A, Factor Xa In Complex With The Inhibitor N-(3-Fluoro-2'-
(Methylsulfonyl)biphenyl-4-Yl)-1-(3-(5-Oxo-4,
5-Dihydro-1h-
Triazol-3-Yl)phenyl)-3-(Trifluoromethyl)-1h-
Pyrazole-5-Car
pdb|3KQC|A Chain A, Factor Xa In Complex With The Inhibitor 6-(2'-
(Methylsulfon Biphenyl-4-Yl)-1-(3-(5-Oxo-4,5-Dihydro-1h-
1,2,4-Triazol-3- Phenyl)-3-(Trifluoromethyl)-5,6-
Dihydro-1h-Pyrazolo[3,4-C] 7(4h)-One
pdb|3KQD|A Chain A, Factor Xa In Complex With The Inhibitor 1-(3-(5-Oxo-4,5-
Dih 2,4-Triazol-3-Yl)phenyl)-6-(2'-(Pyrrolidin-1-
Ylmethyl)biph Yl)-3-(Trifluoromethyl)-5,6-Dihydro-
1h-Pyrazolo[3,4-C]pyri One
pdb|3KQE|A Chain A, Factor Xa In Complex With The Inhibitor 3-Methyl-1-(3-(5-
Ox Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-6-(2'-
(Pyrrolidin-1- Biphenyl-4-Yl)-5,6-Dihydro-1h-
Pyrazolo[3,4-C]pyridin-7(4h)
pdb|3LIW|A Chain A, Factor Xa In Complex With
(R)-2-(1-Adamantylcarbamoylamino)-
3-(3-Carbamidoyl-Phenyl)-N-Phenethyl-Propionic Acid
Amide
pdb|3M36|A Chain A, Factor Xa In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3M37|A Chain A, Factor Xa In Complex With The Inhibitor 1-[2-(Aminomethyl)
Phenyl]-N-(3-Fluoro-2'-Sulfamoylbiphenyl-4-Yl)-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc602)
Length = 234
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 240 NNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDF-AQAI 298
AV+ VE H ++ K DIA+L+L + F + P CLP + + + Q
Sbjct: 65 GEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKT 124
Query: 299 ATVAGWG 305
V+G+G
Sbjct: 125 GIVSGFG 131
>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|F Chain F, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|I Chain I, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|L Chain L, Structure Of The Haptoglobin-Haemoglobin Complex
Length = 347
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 246 VEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305
+EK H D + + DI L+KL +KV + PICLP K Y + V+GWG
Sbjct: 174 IEKVIFHP--DNSTV--DIGLIKLKQKVPVNERVMPICLPSKDYVNVGL---VGYVSGWG 226
>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms
Resolution
pdb|3KL6|A Chain A, Discovery Of Tetrahydropyrimidin-2(1h)-One Derivative
Tak-44 Potent, Selective And Orally Active Factor Xa
Inhibitor
pdb|2XBW|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBX|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBY|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC0|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC4|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC5|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 241
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 240 NNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDF-AQAI 298
AV+ VE H ++ K DIA+L+L + F + P CLP + + + Q
Sbjct: 65 GEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKT 124
Query: 299 ATVAGWG 305
V+G+G
Sbjct: 125 GIVSGFG 131
>pdb|1MQ5|A Chain A, Crystal Structure Of
3-chloro-n-[4-chloro-2-[[(4-chlorophenyl)
Amino]carbonyl]phenyl]-4-[(4-methyl-1-
piperazinyl)methyl]-2- Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1MQ6|A Chain A, Crystal Structure Of
3-Chloro-N-[4-Chloro-2-[[(5-Chloro-2-Pyridinyl)
Amino]carbonyl]-6-Methoxyphenyl]-4-[[(4,
5-Dihydro-2-Oxazolyl)
Methylamino]methyl]-2-Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1V3X|A Chain A, Factor Xa In Complex With The Inhibitor
1-[6-Methyl-4,5,6,7-
Tetrahydrothiazolo(5,4-C)pyridin-2-Yl] Carbonyl-2-
Carbamoyl-4-(6-Chloronaphth-2-Ylsulphonyl)piperazine
pdb|1WU1|A Chain A, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
pdb|2D1J|A Chain A, Factor Xa In Complex With The Inhibitor 2-[[4-[(5-
Chloroindol-2-Yl)sulfonyl]piperazin-1-Yl]
Carbonyl]thieno[3,2-B]pyridine N-Oxide
pdb|2H9E|H Chain H, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
pdb|2P3U|B Chain B, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-N-(4-Chloro-2-{[(5-Chloropyridin-2-Yl)
Amino]carbonyl}-6-Methoxyphenyl)-4-[(1-Methyl-1h-
Imidazol- 2-Yl)methyl]thiophene-2-Carboxamide {pfizer
320663}
pdb|2P3T|B Chain B, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-4-(2-Methylamino-Imidazol-1-Ylmethyl)-Thiophene-
2- Carboxylic Acid [4-Chloro-2-(5-Chloro-Pyridin-2-
Ylcarbamoyl)-6-Methoxy-Phenyl]-Amide
pdb|2EI6|A Chain A, Factor Xa In Complex With The Inhibitor (-)-Cis-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI7|A Chain A, Factor Xa In Complex With The Inhibitor Trans-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI8|A Chain A, Factor Xa In Complex With The Inhibitor (1s,2r,4s)-N1-[(5-
Chloroindol-2-Yl)carbonyl]-4-(N,N-Dimethylcarbamoyl)-N2-
[(5-Methyl-4,5,6,7-Tetrahydrothiazolo[5,
4-C]pyridin-2-Yl) Carbonyl]-1,2-Cyclohexanediamine
pdb|3IIT|A Chain A, Factor Xa In Complex With A Cis-1,2-Diaminocyclohexane
Derivative
pdb|3Q3K|A Chain A, Factor Xa In Complex With A Phenylenediamine Derivative
pdb|3TK5|A Chain A, Factor Xa In Complex With D102-4380
pdb|3TK6|A Chain A, Factor Xa In Complex With D46-5241
Length = 233
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 240 NNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDF-AQAI 298
AV+ VE H ++ K DIA+L+L + F + P CLP + + + Q
Sbjct: 65 GEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKT 124
Query: 299 ATVAGWG 305
V+G+G
Sbjct: 125 GIVSGFG 131
>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2Y5G|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2Y5H|A Chain A, Factor Xa - Cation Inhibitor Complex
Length = 234
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 240 NNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDF-AQAI 298
AV+ VE H ++ K DIA+L+L + F + P CLP + + + Q
Sbjct: 65 GEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKT 124
Query: 299 ATVAGWG 305
V+G+G
Sbjct: 125 GIVSGFG 131
>pdb|2BOK|A Chain A, Factor Xa- Cation
pdb|2JKH|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2VVC|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVC|B Chain B, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVU|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVV|A Chain A, Aminopyrrolidine-Related Triazole Factor Xa Inhibitor
pdb|2VWL|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|B Chain B, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWN|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWO|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2XBV|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 241
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 240 NNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDF-AQAI 298
AV+ VE H ++ K DIA+L+L + F + P CLP + + + Q
Sbjct: 65 GEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKT 124
Query: 299 ATVAGWG 305
V+G+G
Sbjct: 125 GIVSGFG 131
>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|B Chain B, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 241
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 240 NNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDF-AQAI 298
AV+ VE H ++ K DIA+L+L + F + P CLP + + + Q
Sbjct: 65 GEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKT 124
Query: 299 ATVAGWG 305
V+G+G
Sbjct: 125 GIVSGFG 131
>pdb|4H4F|A Chain A, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To
Inhibitor Eglin C From Hirudo Medicinalis
Length = 249
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 246 VEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIK 287
V+ +H++++ +++DIAL+KL V+ ++ IQ CLP K
Sbjct: 75 VDTIHVHKRWNALLLRNDIALIKLAEHVELSDTIQVACLPEK 116
>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With
The Elastase Inhibitor Gr143783
Length = 241
Score = 36.6 bits (83), Expect = 0.053, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 228 VKLGAHYLSS-QLNNAVYPVEKTFLHEKYDKAEIKS--DIALLKLGRKVQFTNFIQPICL 284
V LG H LS+ + + V K +H+ ++ ++ + DIALLKL V T+ IQ CL
Sbjct: 55 VVLGRHSLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCL 114
Query: 285 PIKQYWQHDFAQAIATVAGWG 305
P + + V GWG
Sbjct: 115 PAAGTILPN--NYVCYVTGWG 133
>pdb|1KDQ|A Chain A, Crystal Structure Analysis Of The Mutant S189d Rat
Chymotrypsin
Length = 131
Score = 36.6 bits (83), Expect = 0.063, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 236 SSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFA 295
S + N V + + F + K++ +++DI LLKL QF+ + + LP DF
Sbjct: 60 SDEENIQVLKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVSLP---NVDDDFP 116
Query: 296 QA-IATVAGWGYYTY 309
+ GWG Y
Sbjct: 117 PGTVCATTGWGKTKY 131
>pdb|2ZGC|A Chain A, Crystal Structure Of Active Human Granzyme M
pdb|2ZGH|A Chain A, Crystal Structure Of Active Granzyme M Bound To Its
Product
pdb|2ZKS|A Chain A, Structural Insights Into The Proteolytic Machinery Of
Apoptosis- Inducing Granzyme M
Length = 240
Score = 36.2 bits (82), Expect = 0.068, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 230 LGAHYLSSQLNNAVYPVEKTFLHEKYDKA-EIKSDIALLKLGRKVQFTNFIQPICLPIKQ 288
LG H L S + ++ H +Y +++D+ALL+L KV+ + I+P+ LP K+
Sbjct: 54 LGLHTLDSP--GLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLALPSKR 111
Query: 289 YWQHDFAQAIATVAGWG 305
Q A ++AGWG
Sbjct: 112 --QVVAAGTRCSMAGWG 126
>pdb|2OQ5|A Chain A, Crystal Structure Of Desc1, A New Member Of The Type Ii
Transmembrane Serine Proteinases Family
Length = 232
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 246 VEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQY 289
+ + +HEKY DI+L +L V +TN + +CLP Y
Sbjct: 69 LRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDASY 112
>pdb|2ZEB|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|B Chain B, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|C Chain C, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|D Chain D, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|B Chain B, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|C Chain C, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|D Chain D, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
Length = 243
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 228 VKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIK 287
V+L +L Q + + PV + +H ++ A+I +DIALL+L V+ ++ + + LP
Sbjct: 58 VQLREQHLYYQ--DQLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPA 115
Query: 288 QYWQHDFAQAIAT-VAGWG 305
F + V GWG
Sbjct: 116 ---SETFPPGMPCWVTGWG 131
>pdb|2Z72|A Chain A, New Structure Of Cold-Active Protein Tyrosine Phosphatase
At 1.1 Angstrom
Length = 342
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 52/135 (38%), Gaps = 22/135 (16%)
Query: 63 DIHGQYLDLLMLFDYGKYPP--------KSRYLFLGDYVDRGSNSLETICLLLAYKIKY- 113
D+HGQY LL L K + + GD DRG E + + +
Sbjct: 78 DVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDRGHQVNEVLWFMYQLDQQAR 137
Query: 114 --PGMFHLLRGNHE----CANINKVYGFYDEC----KRRYNVKLWKTFTECFNCMPV--A 161
GM HLL GNHE ++ V+ YD R YN KL+ TE +
Sbjct: 138 DAGGMVHLLMGNHEQMVLGGDLRYVHQRYDIATTLINRPYN-KLYSADTEIGQWLRSKNT 196
Query: 162 AIVDEKIFCCHGGLS 176
I + HGG+S
Sbjct: 197 IIKINDVLYMHGGIS 211
>pdb|1A0L|A Chain A, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|B Chain B, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|C Chain C, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|D Chain D, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
Length = 244
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 228 VKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIK 287
V+L +L Q + + PV + +H ++ A+I +DIALL+L V+ ++ + + LP
Sbjct: 58 VQLREQHLYYQ--DQLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPA 115
Query: 288 QYWQHDFAQAIAT-VAGWG 305
F + V GWG
Sbjct: 116 ---SETFPPGMPCWVTGWG 131
>pdb|2BM2|A Chain A, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|B Chain B, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|C Chain C, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|D Chain D, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2FWW|A Chain A, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|B Chain B, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|C Chain C, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|D Chain D, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FXR|A Chain A, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|B Chain B, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|C Chain C, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|D Chain D, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FPZ|A Chain A, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|B Chain B, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|C Chain C, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|D Chain D, Human Tryptase With 2-Amino Benzimidazole
pdb|2FS8|A Chain A, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|B Chain B, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|C Chain C, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|D Chain D, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS9|A Chain A, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|B Chain B, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|C Chain C, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|D Chain D, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2GDD|A Chain A, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|B Chain B, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|C Chain C, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|D Chain D, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2ZA5|A Chain A, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|B Chain B, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|C Chain C, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|D Chain D, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|4A6L|A Chain A, Beta-Tryptase Inhibitor
pdb|4A6L|B Chain B, Beta-Tryptase Inhibitor
pdb|4A6L|C Chain C, Beta-Tryptase Inhibitor
pdb|4A6L|D Chain D, Beta-Tryptase Inhibitor
pdb|3V7T|A Chain A, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|B Chain B, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|C Chain C, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|D Chain D, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
Length = 245
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 228 VKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIK 287
V+L +L Q + + PV + +H ++ A+I +DIALL+L V+ ++ + + LP
Sbjct: 58 VQLREQHLYYQ--DQLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPA 115
Query: 288 QYWQHDFAQAIAT-VAGWG 305
F + V GWG
Sbjct: 116 ---SETFPPGMPCWVTGWG 131
>pdb|1V73|A Chain A, Crystal Structure Of Cold-Active Protein-Tyrosine
Phosphatase Of A Psychrophile Shewanella Sp
Length = 342
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 52/135 (38%), Gaps = 22/135 (16%)
Query: 63 DIHGQYLDLLMLFDYGKYPP--------KSRYLFLGDYVDRGSNSLETICLLLAYKIKY- 113
D+HGQY LL L K + + GD DRG E + + +
Sbjct: 78 DVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDRGHQVNEVLWFMYQLDQQAR 137
Query: 114 --PGMFHLLRGNHE----CANINKVYGFYDEC----KRRYNVKLWKTFTECFNCMPV--A 161
GM HLL GNHE ++ V+ YD R YN KL+ TE +
Sbjct: 138 DAGGMVHLLMGNHEQMVLGGDLRYVHQRYDIATTLINRPYN-KLYGADTEIGQWLRSKNT 196
Query: 162 AIVDEKIFCCHGGLS 176
I + HGG+S
Sbjct: 197 IIKINDVLYMHGGIS 211
>pdb|2ZBM|A Chain A, Crystal Structure Of I115m Mutant Cold-Active Protein
Tyrosine Phosphatase
Length = 336
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 52/135 (38%), Gaps = 22/135 (16%)
Query: 63 DIHGQYLDLLMLFDYGKYPP--------KSRYLFLGDYVDRGSNSLETICLLLAYKIKY- 113
D+HGQY LL L K + + GD DRG E + + +
Sbjct: 78 DVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDMFDRGHQVNEVLWFMYQLDQQAR 137
Query: 114 --PGMFHLLRGNHE----CANINKVYGFYDEC----KRRYNVKLWKTFTECFNCMPV--A 161
GM HLL GNHE ++ V+ YD R YN KL+ TE +
Sbjct: 138 DAGGMVHLLMGNHEQMVLGGDLRYVHQRYDIATTLINRPYN-KLYGADTEIGQWLRSKNT 196
Query: 162 AIVDEKIFCCHGGLS 176
I + HGG+S
Sbjct: 197 IIKINDVLYMHGGIS 211
>pdb|4D8N|A Chain A, Human Kallikrein 6 Inhibitors With A
Para-Amidobenzylanmine P1 Group Carry A High Binding
Efficiency
pdb|3VFE|A Chain A, Virtual Screening And X-Ray Crystallography For Human
Kallikrein 6 Inhibitors With An Amidinothiophene P1
Group
Length = 223
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 227 EVKLGAHYLSSQLNNAVYP-VEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V LG H L Q ++ V + +H YD A DI LL+L R + + IQP LP
Sbjct: 48 QVFLGKHNLGQQESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQP--LP 105
Query: 286 IKQYWQHDFAQAIAT-VAGWG 305
+++ AQ + + GWG
Sbjct: 106 LERDCS---AQTTSCHILGWG 123
>pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M
Proneurosin
Length = 223
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 246 VEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIAT-VAGW 304
V + +H YD A DI LL+L R + + IQP LP+++ AQ + + GW
Sbjct: 69 VVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQP--LPLERDCS---AQTTSCHILGW 123
Query: 305 G 305
G
Sbjct: 124 G 124
>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino
Benzamidine
pdb|3LC3|A Chain A, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC3|C Chain C, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC5|A Chain A, Selective Benzothiophine Inhibitors Of Factor Ixa
Length = 235
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 252 HEKYDKA--EIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305
H Y+ A + DIALL+L + +++ PIC+ K+Y V+GWG
Sbjct: 76 HHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWG 131
>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 235
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 252 HEKYDKA--EIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305
H Y+ A + DIALL+L + +++ PIC+ K+Y V+GWG
Sbjct: 76 HHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWG 131
>pdb|3SQI|A Chain A, Dna Binding Domain Of Ndc10
Length = 534
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 147 LWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCD-LLW 205
+W +TE MP D K+F + Y++S D I + PT CD ++W
Sbjct: 22 IWHKYTEWLKTMPDLTGADLKLFLSQKYIVKYIASHDDIAKDPLPT--------CDAMIW 73
Query: 206 SDPEKAAESQLTIVRQVRFHAEVKL 230
E+ +V Q R + VKL
Sbjct: 74 FSRALDIENNDVLVLQQRLYGLVKL 98
>pdb|2ZGJ|A Chain A, Crystal Structure Of D86n-gzmm Complexed With Its Optimal
Synthesized Substrate
Length = 240
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 230 LGAHYLSSQLNNAVYPVEKTFLHEKYDKA-EIKSDIALLKLGRKVQFTNFIQPICLPIKQ 288
LG H L S + ++ H +Y +++++ALL+L KV+ + I+P+ LP K+
Sbjct: 54 LGLHTLDSP--GLTFHIKAAIQHPRYKPVPALENNLALLQLDGKVKPSRTIRPLALPSKR 111
Query: 289 YWQHDFAQAIATVAGWG 305
Q A ++AGWG
Sbjct: 112 --QVVAAGTRCSMAGWG 126
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 216 LTIVRQVRFHAEVKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQF 275
LT + H + + ++ + + + + +H +YD ++D++LL+L +Q
Sbjct: 131 LTTAKCSLLHRNITVKTYFNRTSQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQC 190
Query: 276 TNFIQPICLPIKQYWQHDF-AQAIATVAGW 304
P+C P K + +H + ++GW
Sbjct: 191 PGAGLPVCTPEKDFAEHLLIPRTRGLLSGW 220
>pdb|3T79|A Chain A, Ndc10: A Platform For Inner Kinetochore Assembly In
Budding Yeast
pdb|3T79|D Chain D, Ndc10: A Platform For Inner Kinetochore Assembly In
Budding Yeast
Length = 402
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 147 LWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCD-LLW 205
+W +TE MP D K+F + Y++S D I + PT CD ++W
Sbjct: 22 IWHKYTEWLKTMPDLTGADLKLFLSQKYIVKYIASHDDIAKDPLPT--------CDAMIW 73
Query: 206 SDPEKAAESQLTIVRQVRFHAEVKL 230
E+ +V Q R + VKL
Sbjct: 74 FSRALDIENNDVLVLQQRLYGLVKL 98
>pdb|2DFJ|A Chain A, Crystal Structure Of The Diadenosine Tetraphosphate
Hydrolase From Shigella Flexneri 2a
pdb|2DFJ|B Chain B, Crystal Structure Of The Diadenosine Tetraphosphate
Hydrolase From Shigella Flexneri 2a
Length = 280
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 60 ICGDIHGQYLDLLMLFDYGKYPPKSRYLFL-GDYVDRGSNSLETICLLLAYKIKYPGMFH 118
+ GD+HG Y +L+ L ++ P L+L GD V RG SL+ +L Y
Sbjct: 5 LIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLD----VLRYVKSLGDSVR 60
Query: 119 LLRGNHE 125
L+ GNH+
Sbjct: 61 LVLGNHD 67
>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant
Length = 235
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 252 HEKYDKA--EIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305
H Y+ A DIALL+L + +++ PIC+ K+Y V+GWG
Sbjct: 76 HHNYNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWG 131
>pdb|2ODP|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
And C5- Convertase Of Human Complement
pdb|2ODQ|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
And C5- Convertase Of Human Complement
Length = 509
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 263 DIALLKLGRKVQFTNFIQPICLP 285
DIALLKL +KV+ + +PICLP
Sbjct: 318 DIALLKLAQKVKMSTHARPICLP 340
>pdb|3BN9|B Chain B, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
pdb|3BN9|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
pdb|3NCL|A Chain A, Crystal Structure Of Mt-Sp1 Bound To Benzamidine
Phosphonate Inhibitor
pdb|3NPS|A Chain A, Crystal Structure Of Membrane-Type Serine Protease 1
(Mt-Sp1) In Complex With The Fab Inhibitor S4
pdb|3SO3|A Chain A, Structures Of Fab-Protease Complexes Reveal A Highly
Specific Non- Canonical Mechanism Of Inhibition
Length = 241
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 246 VEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIAT-VAGW 304
+++ H ++ DIALL+L + ++++ ++PI LP H F A V GW
Sbjct: 80 LKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISLPDA---SHVFPAGKAIWVTGW 136
Query: 305 GYYTY 309
G+ Y
Sbjct: 137 GHTQY 141
>pdb|2I6Q|A Chain A, Complement Component C2a
pdb|2I6S|A Chain A, Complement Component C2a
Length = 517
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 263 DIALLKLGRKVQFTNFIQPICLP 285
DIALLKL +KV+ + +PICLP
Sbjct: 326 DIALLKLAQKVKMSTHARPICLP 348
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 216 LTIVRQVRFHAEVKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQF 275
LT + H + + ++ + + + + +H +YD ++D++LL+L +Q
Sbjct: 90 LTTAKCSLLHRNITVKTYFNRTSQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQC 149
Query: 276 TNFIQPICLPIKQYWQHDF-AQAIATVAGW 304
P+C P K + +H + ++GW
Sbjct: 150 PGAGLPVCTPEKDFAEHLLIPRTRGLLSGW 179
>pdb|1PFX|C Chain C, Porcine Factor Ixa
pdb|1X7A|C Chain C, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 235
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 252 HEKYDKA--EIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305
H Y+ + DIALL+L + +++ PIC+ K+Y V+GWG
Sbjct: 76 HHSYNATVNKYSHDIALLELDEPLTLNSYVTPICIADKEYTNIFLKFGSGYVSGWG 131
>pdb|1AO5|A Chain A, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme)
pdb|1AO5|B Chain B, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme)
Length = 237
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 16/96 (16%)
Query: 227 EVKLGAHYLSSQLNNAVYP-VEKTFLHEKYD-----------KAEIKSDIALLKLGRKVQ 274
EV LG + L + +A + V K+F H ++ A+ D+ LL+L +
Sbjct: 48 EVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPAD 107
Query: 275 FTNFIQPICLPIKQYWQHDFAQAIATVAGWGYYTYT 310
T+ ++PI LP K+ ++ +A+ GWG T T
Sbjct: 108 ITDVVKPIALPTKE--PKPGSKCLAS--GWGSITPT 139
>pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen
pdb|1QRZ|B Chain B, Catalytic Domain Of Plasminogen
pdb|1QRZ|C Chain C, Catalytic Domain Of Plasminogen
pdb|1QRZ|D Chain D, Catalytic Domain Of Plasminogen
Length = 246
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 16/151 (10%)
Query: 261 KSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTL 320
+ DIALLKL T+ + P CLP Y D + T GWG T K
Sbjct: 99 RKDIALLKLSSPAVITDKVIPACLPSPNYMVADRTECFIT--GWGETQGTFGAGLLKEA- 155
Query: 321 KFPGMSLQILQWFVDSYHSIHLENYATEAAISN-ANNTLKFPGMSLQILQWF-VDSYKLN 378
+ P + ++ + Y ++ +TE + A T G S L F D Y L
Sbjct: 156 QLPVIENKV----CNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQ 211
Query: 379 S----SLGAVAPTPKPQSGLFVYGVKFLQWL 405
LG P KP G++V +F+ W+
Sbjct: 212 GVTSWGLGCARPN-KP--GVYVRVSRFVTWI 239
>pdb|1A0J|A Chain A, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|B Chain B, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|C Chain C, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|D Chain D, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species
Length = 223
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 227 EVKLGAHYL-----SSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQP 281
+V+LG H + + Q ++V K +H Y+ + +DI L+KL + +++
Sbjct: 47 QVRLGEHNIAVNEGTEQFIDSV----KVIMHPSYNSRNLDNDIMLIKLSKPASLNSYVST 102
Query: 282 ICLPIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLK 321
+ LP + V+GWG + ++ SN +TL+
Sbjct: 103 VALPS----SCASSGTRCLVSGWGNLSGSS--SNYPDTLR 136
>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human
Plasminogen
pdb|4DUR|B Chain B, The X-Ray Crystal Structure Of Full-Length Type Ii Human
Plasminogen
pdb|4DUU|A Chain A, The X-Ray Crystal Structure Of Full-Length Type I Human
Plasminogen
pdb|4A5T|S Chain S, Structural Basis For The Conformational Modulation
Length = 791
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 260 IKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305
+ DIALLKL T+ + P CLP Y D + + GWG
Sbjct: 643 TRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECF--ITGWG 686
>pdb|1RTF|B Chain B, Complex Of Benzamidine With The Catalytic Domain Of Human
Two Chain Tissue Plasminogen Activator [(Tc)-T-Pa]
pdb|1A5H|A Chain A, Catalytic Domain Of Human Two-Chain Tissue Plasminogen
Activator Complex Of A Bis-Benzamidine
pdb|1A5H|B Chain B, Catalytic Domain Of Human Two-Chain Tissue Plasminogen
Activator Complex Of A Bis-Benzamidine
Length = 252
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 244 YPVEKTFLHEKYDKAEIKSDIALLKL----GRKVQFTNFIQPICLP 285
+ VEK +H+++D +DIALL+L R Q ++ ++ +CLP
Sbjct: 77 FEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLP 122
>pdb|1BDA|A Chain A, Catalytic Domain Of Human Single Chain Tissue Plasminogen
Activator In Complex With Dansyl-Egr-Cmk
(Dansyl-Glu-Gly-Arg Chloromethyl Ketone)
pdb|1BDA|B Chain B, Catalytic Domain Of Human Single Chain Tissue Plasminogen
Activator In Complex With Dansyl-Egr-Cmk
(Dansyl-Glu-Gly-Arg Chloromethyl Ketone)
Length = 265
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 244 YPVEKTFLHEKYDKAEIKSDIALLKL----GRKVQFTNFIQPICLP 285
+ VEK +H+++D +DIALL+L R Q ++ ++ +CLP
Sbjct: 90 FEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLP 135
>pdb|1KYN|B Chain B, Cathepsin-G
pdb|1KYN|A Chain A, Cathepsin-G
Length = 235
Score = 33.1 bits (74), Expect = 0.64, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 228 VKLGAHYLSSQLNNAVY-PVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V LGAH + + N + + H +Y++ I++DI LL+L R+V+ + P+ LP
Sbjct: 52 VTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPR 111
Query: 287 KQYWQHDFAQAIATVAGWG 305
Q + + TVAGWG
Sbjct: 112 AQ--EGLRPGTLCTVAGWG 128
>pdb|1AU8|A Chain A, Human Cathepsin G
pdb|1T32|A Chain A, A Dual Inhibitor Of The Leukocyte Proteases Cathepsin G
And Chymase With Therapeutic Efficacy In Animals Models
Of Inflammation
pdb|1CGH|A Chain A, Human Cathepsin G
Length = 224
Score = 33.1 bits (74), Expect = 0.66, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 228 VKLGAHYLSSQLNNAVY-PVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V LGAH + + N + + H +Y++ I++DI LL+L R+V+ + P+ LP
Sbjct: 52 VTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPR 111
Query: 287 KQYWQHDFAQAIATVAGWG 305
Q + + TVAGWG
Sbjct: 112 AQ--EGLRPGTLCTVAGWG 128
>pdb|1RJX|B Chain B, Human Plasminogen Catalytic Domain, K698m Mutant
Length = 247
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 261 KSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305
+ DIALLKL T+ + P CLP Y D + T GWG
Sbjct: 100 RKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFIT--GWG 142
>pdb|3UIR|A Chain A, Crystal Structure Of The Plasmin-Textilinin-1 Complex
pdb|3UIR|B Chain B, Crystal Structure Of The Plasmin-Textilinin-1 Complex
Length = 247
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 261 KSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305
+ DIALLKL T+ + P CLP Y D + T GWG
Sbjct: 100 RKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFIT--GWG 142
>pdb|1BUI|A Chain A, Structure Of The Ternary
Microplasmin-Staphylokinase-Microplasmin Complex: A
Proteinase-Cofactor-Substrate Complex In Action
pdb|1BUI|B Chain B, Structure Of The Ternary
Microplasmin-Staphylokinase-Microplasmin Complex: A
Proteinase-Cofactor-Substrate Complex In Action
Length = 250
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 261 KSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305
+ DIALLKL T+ + P CLP Y D + T GWG
Sbjct: 103 RKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFIT--GWG 145
>pdb|1AZZ|A Chain A, Fiddler Crab Collagenase Complexed To Ecotin
pdb|1AZZ|B Chain B, Fiddler Crab Collagenase Complexed To Ecotin
Length = 226
Score = 33.1 bits (74), Expect = 0.71, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Query: 227 EVKLGAHYLSSQLNNAVYPVEKTF-LHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V LGAH + V F +HE Y+ I +DIA+++L V T I + LP
Sbjct: 50 DVVLGAHNIREDEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLP 109
Query: 286 IKQYWQHDFAQAIATVAGWGYYTYTT-AISNAKNTLKFPGMS 326
+ T GWG + + IS+ + P MS
Sbjct: 110 STDVG----VGTVVTPTGWGLPSDSALGISDVLRQVDVPIMS 147
>pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|B Chain B, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|C Chain C, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|D Chain D, Crystal Structure Of Human Plasminogen Catalytic Domain
Length = 247
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 261 KSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305
+ DIALLKL T+ + P CLP Y D + T GWG
Sbjct: 100 RKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFIT--GWG 142
>pdb|1L4Z|A Chain A, X-Ray Crystal Structure Of The Complex Of Microplasminogen
With Alpha Domain Of Streptokinase In The Presence
Cadmium Ions
Length = 248
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 261 KSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305
+ DIALLKL T+ + P CLP Y D + T GWG
Sbjct: 101 RKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFIT--GWG 143
>pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
pdb|1BML|B Chain B, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
Length = 250
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 261 KSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305
+ DIALLKL T+ + P CLP Y D + T GWG
Sbjct: 103 RKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFIT--GWG 145
>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant
pdb|2WPJ|S Chain S, Factor Ixa Superactive Triple Mutant, Nacl-Soaked
pdb|2WPK|S Chain S, Factor Ixa Superactive Triple Mutant, Ethylene
Glycol-Soaked
pdb|2WPL|S Chain S, Factor Ixa Superactive Triple Mutant, Edta-Soaked
Length = 235
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 263 DIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305
DIALL+L + +++ PIC+ K+Y V+GWG
Sbjct: 89 DIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWG 131
>pdb|1L4D|A Chain A, Crystal Structure Of Microplasminogen-streptokinase Alpha
Domain Complex
Length = 249
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 261 KSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305
+ DIALLKL T+ + P CLP Y D + T GWG
Sbjct: 102 RKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFIT--GWG 144
>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited
Length = 235
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 263 DIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305
DIALL+L + +++ PIC+ K+Y V+GWG
Sbjct: 89 DIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWG 131
>pdb|2WUB|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUB|C Chain C, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUC|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Non- Inhibitory Antibody Fab40.Deltatrp And
Ac-Kqlr-Chloromethylketone
pdb|3K2U|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Inhibitory Antibody Fab40
Length = 257
Score = 32.7 bits (73), Expect = 0.80, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 18/95 (18%)
Query: 223 RFHAEVKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKS-------DIALLKLGRK--- 272
R V LG H+ N V +TF EKY + S D+ L++L +K
Sbjct: 48 RDSVSVVLGQHFF-----NRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDR 102
Query: 273 -VQFTNFIQPICLPIKQYWQHDFAQAIATVAGWGY 306
+ F+QPICLP + A +AGWG+
Sbjct: 103 CATRSQFVQPICLP--EPGSTFPAGHKCQIAGWGH 135
>pdb|2R0L|A Chain A, Short Form Hgfa With Inhibitory Fab75
Length = 248
Score = 32.7 bits (73), Expect = 0.80, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 18/95 (18%)
Query: 223 RFHAEVKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKS-------DIALLKLGRK--- 272
R V LG H+ N V +TF EKY + S D+ L++L +K
Sbjct: 48 RDSVSVVLGQHFF-----NRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDR 102
Query: 273 -VQFTNFIQPICLPIKQYWQHDFAQAIATVAGWGY 306
+ F+QPICLP + A +AGWG+
Sbjct: 103 CATRSQFVQPICLP--EPGSTFPAGHKCQIAGWGH 135
>pdb|2QY0|B Chain B, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
pdb|2QY0|D Chain D, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
Length = 242
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 227 EVKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAE---IKSDIALLKLGRKVQFTNFIQPIC 283
+V LG + + +P+ + +H Y + E + DIALL+L V + PIC
Sbjct: 55 DVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPIC 114
Query: 284 LP 285
LP
Sbjct: 115 LP 116
>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of
Complement Protease C1r
Length = 329
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 227 EVKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAE---IKSDIALLKLGRKVQFTNFIQPIC 283
+V LG + + +P+ + +H Y + E + DIALL+L V + PIC
Sbjct: 144 DVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPIC 203
Query: 284 LP 285
LP
Sbjct: 204 LP 205
>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease
C1r
Length = 328
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 227 EVKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAE---IKSDIALLKLGRKVQFTNFIQPIC 283
+V LG + + +P+ + +H Y + E + DIALL+L V + PIC
Sbjct: 144 DVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPIC 203
Query: 284 LP 285
LP
Sbjct: 204 LP 205
>pdb|2B9L|A Chain A, Crystal Structure Of Prophenoloxidase Activating Factor-Ii
From The Beetle Holotrichia Diomphalia
Length = 394
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 246 VEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305
+ + +H ++ + +D+ALL L R + + I ICLP +Q D + A+ GWG
Sbjct: 214 IRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGTICLP-QQSQIFDSTECFAS--GWG 270
>pdb|1YBW|A Chain A, Protease Domain Of Hgfa With No Inhibitor
pdb|1YBW|B Chain B, Protease Domain Of Hgfa With No Inhibitor
pdb|1YC0|A Chain A, Short Form Hgfa With First Kunitz Domain From Hai-1
pdb|2R0K|A Chain A, Protease Domain Of Hgfa With Inhibitor Fab58
Length = 283
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 18/95 (18%)
Query: 223 RFHAEVKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKS-------DIALLKLGRK--- 272
R V LG H+ N V +TF EKY + S D+ L++L +K
Sbjct: 83 RDSVSVVLGQHFF-----NRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDR 137
Query: 273 -VQFTNFIQPICLPIKQYWQHDFAQAIATVAGWGY 306
+ F+QPICLP + A +AGWG+
Sbjct: 138 CATRSQFVQPICLP--EPGSTFPAGHKCQIAGWGH 170
>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
pdb|1GPZ|B Chain B, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
Length = 399
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 227 EVKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAE---IKSDIALLKLGRKVQFTNFIQPIC 283
+V LG + + +P+ + +H Y + E + DIALL+L V + PIC
Sbjct: 212 DVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPIC 271
Query: 284 LP 285
LP
Sbjct: 272 LP 273
>pdb|2OK5|A Chain A, Human Complement Factor B
Length = 752
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 263 DIALLKLGRKVQFTNFIQPICLPIKQ 288
D+AL+KL K+++ I+PICLP +
Sbjct: 561 DVALIKLKNKLKYGQTIRPICLPCTE 586
>pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|H Chain H, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 732
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 263 DIALLKLGRKVQFTNFIQPICLPIKQ 288
D+AL+KL K+++ I+PICLP +
Sbjct: 542 DVALIKLKNKLKYGQTIRPICLPCTE 567
>pdb|2RA3|A Chain A, Human Cationic Trypsin Complexed With Bovine Pancreatic
Trypsin Inhibitor (bpti)
pdb|2RA3|B Chain B, Human Cationic Trypsin Complexed With Bovine Pancreatic
Trypsin Inhibitor (bpti)
Length = 224
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 24/115 (20%)
Query: 227 EVKLGAHYLSS-QLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V+LG H + + N K H +YD+ + +DI L+KL + + I LP
Sbjct: 47 QVRLGEHNIEVLEGNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINAHVSTISLP 106
Query: 286 IKQYWQHDFAQAIAT---VAGWGYYTYTTA-------------ISNAKNTLKFPG 324
A T ++GWG + A +S AK +PG
Sbjct: 107 TA-------PPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPG 154
>pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|I Chain I, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|2XWJ|I Chain I, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|J Chain J, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|K Chain K, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|L Chain L, Crystal Structure Of Complement C3b In Complex With Factor
B
Length = 741
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 263 DIALLKLGRKVQFTNFIQPICLPIKQ 288
D+AL+KL K+++ I+PICLP +
Sbjct: 551 DVALIKLKNKLKYGQTIRPICLPCTE 576
>pdb|1RRK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
pdb|1RS0|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With Di-Isopropyl-Phosphate (Dip)
pdb|1RTK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With 4-Guanidinobenzoic Acid
Length = 497
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 263 DIALLKLGRKVQFTNFIQPICLP 285
D+AL+KL K+++ I+PICLP
Sbjct: 309 DVALIKLKNKLKYGQTIRPICLP 331
>pdb|2WIN|I Chain I, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|J Chain J, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|K Chain K, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|L Chain L, C3 Convertase (C3bbb) Stabilized By Scin
Length = 507
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 263 DIALLKLGRKVQFTNFIQPICLP 285
D+AL+KL K+++ I+PICLP
Sbjct: 317 DVALIKLKNKLKYGQTIRPICLP 339
>pdb|1SLW|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Nickel- Bound
Length = 223
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 227 EVKLGAHYLSS-QLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V+LG H ++ + N K H +D+ + +DI L+KL V+ + I LP
Sbjct: 47 QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATIALP 106
Query: 286 IKQYWQHDFAQAIATVAGWGY 306
A ++GWG+
Sbjct: 107 S----SCAPAGTQCLISGWGH 123
>pdb|1CO7|E Chain E, R117h Mutant Rat Anionic Trypsin Complexed With Bovine
Pancreatic Trypsin Inhibitor (Bpti)
Length = 245
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 227 EVKLGAHYLSS-QLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V+LG H ++ + N K H +D+ + +DI L+KL V+ + + LP
Sbjct: 69 QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNAHVATVALP 128
>pdb|1TRN|A Chain A, Crystal Structure Of Human Trypsin 1: Unexpected
Phosphorylation Of Tyrosine 151
pdb|1TRN|B Chain B, Crystal Structure Of Human Trypsin 1: Unexpected
Phosphorylation Of Tyrosine 151
Length = 224
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 24/115 (20%)
Query: 227 EVKLGAHYLSS-QLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V+LG H + + N K H +YD+ + +DI L+KL + + I LP
Sbjct: 47 QVRLGEHNIEVLEGNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINARVSTISLP 106
Query: 286 IKQYWQHDFAQAIAT---VAGWGYYTYTTA-------------ISNAKNTLKFPG 324
A T ++GWG + A +S AK +PG
Sbjct: 107 TA-------PPATGTKCLISGWGNTASSGADXPDELQCLDAPVLSQAKCEASYPG 154
>pdb|1DLE|A Chain A, Factor B Serine Protease Domain
pdb|1DLE|B Chain B, Factor B Serine Protease Domain
Length = 298
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 263 DIALLKLGRKVQFTNFIQPICLPIKQ 288
D+AL+KL K+++ I+PICLP +
Sbjct: 110 DVALIKLKNKLKYGQTIRPICLPCTE 135
>pdb|2EX2|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Escherichia Coli
pdb|2EX6|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Escherichia Coli, Complexed With Ampicillin
pdb|2EX8|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Escherichia Coli, Complexed With Penicillin-G
pdb|2EX9|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Escherichia Coli, Complexed With Penicillin-V
pdb|2EXA|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Escherichia Coli, Complexed With Farom
pdb|2EXB|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Escherichia Coli, Complexed With Flomox
Length = 458
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 148 WKTFTECFNCMPVAAIVDEKIFCC 171
W T+CF+ P AAIVD F
Sbjct: 134 WNDMTQCFSAPPAAAIVDRNCFSV 157
>pdb|1H4W|A Chain A, Structure Of Human Trypsin Iv (Brain Trypsin)
Length = 224
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 227 EVKLGAHYL-----SSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQP 281
+V+LG H + + Q NAV K H KY++ + +DI L+KL +
Sbjct: 47 QVRLGEHNIKVLEGNEQFINAV----KIIRHPKYNRDTLDNDIMLIKLSSPAVINARVST 102
Query: 282 ICLPIKQYWQHDFAQAIATVAGWG 305
I LP A ++GWG
Sbjct: 103 ISLPTAP----PAAGTECLISGWG 122
>pdb|1SLX|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Zinc-Bound
pdb|1SLV|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Copper- Bound
pdb|1SLU|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin
Length = 223
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 227 EVKLGAHYLSS-QLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V+LG H ++ + N K H +D+ + +DI L+KL V+ + + LP
Sbjct: 47 QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP 106
Query: 286 IKQYWQHDFAQAIATVAGWGY 306
A ++GWG+
Sbjct: 107 S----SCAPAGTQCLISGWGH 123
>pdb|1ANB|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Glu
Length = 223
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 227 EVKLGAHYLSS-QLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V+LG H ++ + N K H +D+ + +DI L+KL V+ + + LP
Sbjct: 47 QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP 106
>pdb|1ANC|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Lys
Length = 223
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 227 EVKLGAHYLSS-QLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V+LG H ++ + N K H +D+ + +DI L+KL V+ + + LP
Sbjct: 47 QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP 106
>pdb|1DPO|A Chain A, Structure Of Rat Trypsin
Length = 223
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 227 EVKLGAHYLSS-QLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V+LG H ++ + N K H +D+ + +DI L+KL V+ + + LP
Sbjct: 47 QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP 106
>pdb|3TGJ|E Chain E, S195a Trypsinogen Complexed With Bovine Pancreatic Trypsin
Inhibitor (Bpti)
Length = 233
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 227 EVKLGAHYLSS-QLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V+LG H ++ + N K H +D+ + +DI L+KL V+ + + LP
Sbjct: 57 QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP 116
>pdb|3TGI|E Chain E, Wild-Type Rat Anionic Trypsin Complexed With Bovine
Pancreatic Trypsin Inhibitor (Bpti)
pdb|1ANE|A Chain A, Anionic Trypsin Wild Type
pdb|3FP6|E Chain E, Anionic Trypsin In Complex With Bovine Pancreatic Trypsin
Inhibitor (Bpti) Determined To The 1.49 A Resolution
Limit
Length = 223
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 227 EVKLGAHYLSS-QLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V+LG H ++ + N K H +D+ + +DI L+KL V+ + + LP
Sbjct: 47 QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP 106
>pdb|1BRB|E Chain E, Crystal Structures Of Rat Anionic Trypsin Complexed With
The Protein Inhibitors Appi And Bpti
pdb|1BRC|E Chain E, Relocating A Negative Charge In The Binding Pocket Of
Trypsin
pdb|1BRA|A Chain A, Relocating A Negative Charge In The Binding Pocket Of
Trypsin
Length = 223
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 227 EVKLGAHYLSS-QLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V+LG H ++ + N K H +D+ + +DI L+KL V+ + + LP
Sbjct: 47 QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP 106
>pdb|1K9O|E Chain E, Crystal Structure Of Michaelis Serpin-Trypsin Complex
pdb|1YKT|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|1YLC|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|1YLD|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|3FP7|E Chain E, Anionic Trypsin Variant S195a In Complex With Bovine
Pancreatic Trypsin Inhibitor (Bpti) Cleaved At The
Scissile Bond (Lys15-Ala16) Determined To The 1.46 A
Resolution Limit
pdb|3FP8|E Chain E, Anionic Trypsin Variant S195a In Complex With Bovine
Pancreatic Trypsin Inhibitor (Bpti) Determined To The
1.46 A Resolution Limit
Length = 223
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 227 EVKLGAHYLSS-QLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V+LG H ++ + N K H +D+ + +DI L+KL V+ + + LP
Sbjct: 47 QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP 106
>pdb|1F7Z|A Chain A, Rat Trypsinogen K15a Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 233
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 227 EVKLGAHYLSS-QLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V+LG H ++ + N K H +D+ + +DI L+KL V+ + + LP
Sbjct: 57 QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP 116
>pdb|1AMH|A Chain A, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With
Ser (D189s)
pdb|1AMH|B Chain B, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With
Ser (D189s)
Length = 223
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 227 EVKLGAHYLSS-QLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V+LG H ++ + N K H +D+ + +DI L+KL V+ + + LP
Sbjct: 47 QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP 106
>pdb|1F5R|A Chain A, Rat Trypsinogen Mutant Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 231
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 227 EVKLGAHYLSS-QLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V+LG H ++ + N K H +D+ + +DI L+KL V+ + + LP
Sbjct: 55 QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP 114
Query: 286 IKQYWQHDFAQAIATVAGWG 305
A ++GWG
Sbjct: 115 SSCA----PAGTQCLISGWG 130
>pdb|1FY8|E Chain E, Crystal Structure Of The Deltaile16val17 Rat Anionic
Trypsinogen-Bpti Complex
Length = 231
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 227 EVKLGAHYLSS-QLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V+LG H ++ + N K H +D+ + +DI L+KL V+ + + LP
Sbjct: 55 QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP 114
Query: 286 IKQYWQHDFAQAIATVAGWG 305
A ++GWG
Sbjct: 115 SSCA----PAGTQCLISGWG 130
>pdb|3TGK|E Chain E, Trypsinogen Mutant D194n And Deletion Of Ile 16-Val 17
Complexed With Bovine Pancreatic Trypsin Inhibitor
(Bpti)
Length = 231
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 227 EVKLGAHYLSS-QLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V+LG H ++ + N K H +D+ + +DI L+KL V+ + + LP
Sbjct: 55 QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP 114
Query: 286 IKQYWQHDFAQAIATVAGWG 305
A ++GWG
Sbjct: 115 SSCA----PAGTQCLISGWG 130
>pdb|1B0F|A Chain A, Crystal Structure Of Human Neutrophil Elastase With Mdl
101, 146
Length = 218
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 230 LGAHYLS-SQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQ 288
LGAH LS + V+ V++ F + YD + +DI +L+L +Q LP +
Sbjct: 55 LGAHNLSRREPTRQVFAVQRIF-EDGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQG 113
Query: 289 YWQHDFAQAIATVAGWG 305
+ Q +A GWG
Sbjct: 114 RRLGNGVQCLAM--GWG 128
>pdb|1HNE|E Chain E, Structure Of Human Neutrophil Elastase In Complex With A
Peptide Chloromethyl Ketone Inhibitor At 1.84-Angstroms
Resolution
Length = 218
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 230 LGAHYLS-SQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQ 288
LGAH LS + V+ V++ F + YD + +DI +L+L +Q LP +
Sbjct: 55 LGAHNLSRREPTRQVFAVQRIF-EDGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQG 113
Query: 289 YWQHDFAQAIATVAGWG 305
+ Q +A GWG
Sbjct: 114 RRLGNGVQCLAM--GWG 128
>pdb|3MXT|A Chain A, Crystal Structure Of Pantoate-Beta-Alanine Ligase From
Campy Jejuni
pdb|3UY4|A Chain A, Crystal Structure Of Pantoate--Beta-Alanine Ligase From
Campylobacter Jejuni Complexed With Amp And Vitamin B5
Length = 285
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 4 VDSLNLDSIIN-----RLIDIDARSGRNVNLHESEISALCRVSREIFLSEPMLLE 53
VD LN D I R D A+S RNV L + E A +S+ IFL+E ++ E
Sbjct: 163 VDDLNFDLKIQICPIIREEDGLAKSSRNVYLSKEERKASLAISQSIFLAEKLVRE 217
>pdb|2R9P|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|B Chain B, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|C Chain C, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|D Chain D, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|3L33|A Chain A, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|B Chain B, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|C Chain C, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|D Chain D, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L3T|A Chain A, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|B Chain B, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|C Chain C, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|D Chain D, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3P92|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor Variant (Bpti-K15rR17G)
pdb|3P95|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor Variant (Bpti-K15rR17D)
Length = 224
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 227 EVKLGAHYLSS-QLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V+LG H + + N K H KY++ + +DI L+KL + I LP
Sbjct: 47 QVRLGEHNIKVLEGNEQFINAAKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLP 106
Query: 286 IKQYWQHDFAQAIATVAGWG 305
A ++GWG
Sbjct: 107 TAP----PAAGTECLISGWG 122
>pdb|4DG4|A Chain A, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|B Chain B, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|D Chain D, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|G Chain G, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
Length = 224
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 227 EVKLGAHYLSS-QLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V+LG H + + N K H KY++ + +DI L+KL + I LP
Sbjct: 47 QVRLGEHNIKVLEGNEQFINAAKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLP 106
Query: 286 IKQYWQHDFAQAIATVAGWG 305
A ++GWG
Sbjct: 107 TAP----PAAGTECLISGWG 122
>pdb|1NTP|A Chain A, Use Of The Neutron Diffraction HD EXCHANGE TECHNIQUE TO
Determine The Conformational Dynamics Of Trypsin
Length = 223
Score = 30.0 bits (66), Expect = 5.3, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Query: 227 EVKLGAHYLSS-QLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V+LG ++ + N K+ +H YD + +DI L+KL + + I LP
Sbjct: 47 QVRLGEDNINVVEGNEQFISASKSIVHPSYDSNTLNNDIMLIKLKSAASLDSRVASISLP 106
Query: 286 IKQYWQHDFAQAIATVAGWGYYTYT-TAISNAKNTLKFPGMS 326
A ++GWG + T+ + LK P +S
Sbjct: 107 T----SCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILS 144
>pdb|1AND|A Chain A, Anionic Trypsin Mutant With Arg 96 Replaced By His
Length = 223
Score = 30.0 bits (66), Expect = 5.9, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 227 EVKLGAHYLSS-QLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V+LG H ++ + N K H +D + +DI L+KL V+ + + LP
Sbjct: 47 QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDHKTLNNDIMLIKLSSPVKLNARVATVALP 106
>pdb|1QL9|A Chain A, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99rt
pdb|1J14|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99rt
Length = 223
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 227 EVKLGAHYLSS-QLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V+LG H ++ + N K H +D+ +DI L+KL V+ + + LP
Sbjct: 47 QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALP 106
>pdb|1J15|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT
pdb|1J16|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT
pdb|1J17|T Chain T, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99175190RT
Length = 223
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 227 EVKLGAHYLSS-QLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V+LG H ++ + N K H +D+ +DI L+KL V+ + + LP
Sbjct: 47 QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALP 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,282,746
Number of Sequences: 62578
Number of extensions: 949179
Number of successful extensions: 2797
Number of sequences better than 100.0: 265
Number of HSP's better than 100.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 2527
Number of HSP's gapped (non-prelim): 283
length of query: 826
length of database: 14,973,337
effective HSP length: 107
effective length of query: 719
effective length of database: 8,277,491
effective search space: 5951516029
effective search space used: 5951516029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)