Query psy17085
Match_columns 826
No_of_seqs 544 out of 3676
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 21:28:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17085.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17085hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0372|consensus 100.0 5.1E-54 1.1E-58 424.9 16.8 220 8-239 2-222 (303)
2 KOG0373|consensus 100.0 1.3E-49 2.9E-54 386.9 15.8 221 7-239 4-225 (306)
3 KOG0374|consensus 100.0 1.7E-47 3.7E-52 412.4 17.4 268 2-274 2-294 (331)
4 PTZ00480 serine/threonine-prot 100.0 1.8E-46 3.9E-51 403.3 22.6 266 4-274 6-292 (320)
5 PTZ00244 serine/threonine-prot 100.0 1.3E-45 2.7E-50 394.9 20.8 260 9-273 4-284 (294)
6 cd07420 MPP_RdgC Drosophila me 100.0 1.8E-45 3.9E-50 396.4 22.1 253 6-271 4-311 (321)
7 cd07414 MPP_PP1_PPKL PP1, PPKL 100.0 3.3E-45 7.2E-50 392.4 20.0 260 9-273 2-282 (293)
8 KOG0375|consensus 100.0 8.3E-46 1.8E-50 382.4 13.5 253 9-273 48-333 (517)
9 PTZ00239 serine/threonine prot 100.0 1.7E-44 3.7E-49 387.3 21.3 253 8-273 2-276 (303)
10 cd07415 MPP_PP2A_PP4_PP6 PP2A, 100.0 1.4E-44 3.1E-49 386.1 20.0 251 9-272 2-273 (285)
11 cd07416 MPP_PP2B PP2B, metallo 100.0 1.8E-43 3.9E-48 381.5 22.4 221 8-239 2-229 (305)
12 smart00156 PP2Ac Protein phosp 100.0 1.7E-43 3.7E-48 376.6 20.1 239 29-272 1-259 (271)
13 cd07417 MPP_PP5_C PP5, C-termi 100.0 3.2E-43 6.9E-48 380.1 19.8 255 4-271 11-291 (316)
14 KOG0371|consensus 100.0 2.5E-43 5.3E-48 351.3 11.6 218 9-238 20-238 (319)
15 cd07419 MPP_Bsu1_C Arabidopsis 100.0 9.9E-42 2.1E-46 369.7 20.7 258 12-274 1-303 (311)
16 cd07418 MPP_PP7 PP7, metalloph 100.0 1.7E-41 3.6E-46 370.3 21.3 231 5-240 8-281 (377)
17 KOG0377|consensus 100.0 1.2E-32 2.5E-37 291.4 11.5 209 26-239 131-369 (631)
18 PF11911 DUF3429: Protein of u 100.0 3.1E-31 6.8E-36 255.1 14.0 137 684-821 1-141 (142)
19 KOG0376|consensus 99.9 1.4E-27 3E-32 260.6 10.3 208 27-239 181-394 (476)
20 cd00144 MPP_PPP_family phospho 99.9 2.5E-22 5.3E-27 209.6 13.8 147 59-212 1-157 (225)
21 PRK13625 bis(5'-nucleosyl)-tet 99.9 1.4E-21 3.1E-26 206.4 14.3 121 56-178 1-145 (245)
22 TIGR00668 apaH bis(5'-nucleosy 99.9 1.1E-21 2.4E-26 206.6 10.6 121 56-180 1-128 (279)
23 cd07422 MPP_ApaH Escherichia c 99.8 3.5E-21 7.7E-26 203.0 12.2 156 58-222 1-168 (257)
24 KOG3627|consensus 99.8 3.4E-20 7.4E-25 197.2 17.9 182 226-413 65-255 (256)
25 PRK00166 apaH diadenosine tetr 99.8 2.5E-20 5.5E-25 198.6 12.3 158 56-221 1-169 (275)
26 cd07423 MPP_PrpE Bacillus subt 99.8 5.9E-20 1.3E-24 193.0 13.5 120 56-178 1-142 (234)
27 cd00190 Tryp_SPc Trypsin-like 99.8 3.7E-19 8.1E-24 184.7 16.2 174 228-410 54-231 (232)
28 cd07413 MPP_PA3087 Pseudomonas 99.8 2.4E-19 5.1E-24 186.6 13.5 115 59-176 2-143 (222)
29 cd07421 MPP_Rhilphs Rhilph pho 99.8 1.3E-18 2.9E-23 183.2 14.6 148 57-209 3-243 (304)
30 PRK11439 pphA serine/threonine 99.8 1.3E-18 2.8E-23 180.7 12.3 116 55-176 16-146 (218)
31 PHA02239 putative protein phos 99.8 4.7E-18 1E-22 177.7 13.0 137 56-208 1-184 (235)
32 cd07424 MPP_PrpA_PrpB PrpA and 99.7 1.1E-17 2.4E-22 172.5 13.9 143 56-210 1-158 (207)
33 smart00020 Tryp_SPc Trypsin-li 99.7 4.4E-17 9.5E-22 169.4 15.7 172 227-408 54-229 (229)
34 cd07425 MPP_Shelphs Shewanella 99.7 1.5E-17 3.4E-22 171.2 10.8 118 59-177 1-139 (208)
35 PRK09968 serine/threonine-spec 99.7 2.8E-16 6E-21 163.2 13.1 115 56-176 15-144 (218)
36 PF00089 Trypsin: Trypsin; In 99.7 5.2E-16 1.1E-20 159.9 13.5 166 228-408 52-220 (220)
37 COG5640 Secreted trypsin-like 99.5 1.6E-13 3.6E-18 144.6 13.9 181 235-418 97-284 (413)
38 PRK09453 phosphodiesterase; Pr 98.8 1.8E-08 3.9E-13 101.8 8.3 69 56-128 1-77 (182)
39 PF00149 Metallophos: Calcineu 98.7 4.2E-08 9.1E-13 95.3 7.5 76 56-131 1-82 (200)
40 cd00841 MPP_YfcE Escherichia c 98.5 1.9E-07 4E-12 91.7 7.5 84 57-177 1-87 (155)
41 TIGR00040 yfcE phosphoesterase 98.5 4.8E-07 1E-11 89.2 8.5 62 56-126 1-63 (158)
42 PF12850 Metallophos_2: Calcin 98.3 6.2E-07 1.3E-11 87.5 6.0 63 56-130 1-63 (156)
43 cd07397 MPP_DevT Myxococcus xa 98.3 1.6E-06 3.4E-11 90.5 7.7 112 57-178 2-160 (238)
44 cd07388 MPP_Tt1561 Thermus the 98.2 4.1E-06 8.8E-11 87.2 7.5 72 55-127 4-75 (224)
45 cd07379 MPP_239FB Homo sapiens 98.0 7.8E-06 1.7E-10 78.4 5.6 61 57-127 1-63 (135)
46 cd00838 MPP_superfamily metall 97.9 3.8E-05 8.3E-10 71.4 7.3 67 59-125 1-69 (131)
47 cd07392 MPP_PAE1087 Pyrobaculu 97.8 3.7E-05 8.1E-10 77.4 6.1 64 58-127 1-65 (188)
48 cd07394 MPP_Vps29 Homo sapiens 97.8 0.00011 2.3E-09 74.2 9.0 58 57-126 1-64 (178)
49 PRK05340 UDP-2,3-diacylglucosa 97.6 9.3E-05 2E-09 78.3 6.5 70 56-127 1-83 (241)
50 PRK11340 phosphodiesterase Yae 97.5 0.00012 2.6E-09 78.9 6.2 70 56-127 50-125 (271)
51 cd07385 MPP_YkuE_C Bacillus su 97.5 0.00011 2.4E-09 76.4 5.5 71 55-127 1-76 (223)
52 cd07404 MPP_MS158 Microscilla 97.5 6.5E-05 1.4E-09 74.5 3.5 67 58-127 1-68 (166)
53 cd07403 MPP_TTHA0053 Thermus t 97.2 0.00065 1.4E-08 64.7 6.1 56 59-125 1-56 (129)
54 TIGR03729 acc_ester putative p 97.1 0.0007 1.5E-08 71.5 6.0 68 57-127 1-74 (239)
55 TIGR00619 sbcd exonuclease Sbc 97.0 0.001 2.2E-08 71.0 6.2 72 56-127 1-88 (253)
56 COG0622 Predicted phosphoester 97.0 0.0016 3.5E-08 65.0 6.7 64 56-127 2-65 (172)
57 PHA02546 47 endonuclease subun 96.8 0.0016 3.4E-08 72.6 6.0 72 56-127 1-89 (340)
58 cd07400 MPP_YydB Bacillus subt 96.8 0.0025 5.4E-08 61.4 6.6 68 58-126 1-80 (144)
59 cd07396 MPP_Nbla03831 Homo sap 96.8 0.002 4.4E-08 69.2 6.6 72 57-128 2-87 (267)
60 TIGR01854 lipid_A_lpxH UDP-2,3 96.7 0.0023 4.9E-08 67.3 5.5 68 58-127 1-81 (231)
61 PRK04036 DNA polymerase II sma 96.7 0.0016 3.5E-08 76.1 4.6 114 55-175 243-388 (504)
62 cd07402 MPP_GpdQ Enterobacter 96.6 0.0042 9.1E-08 65.3 6.8 67 57-127 1-83 (240)
63 COG0639 ApaH Diadenosine tetra 96.5 0.00087 1.9E-08 64.1 1.1 97 129-225 3-108 (155)
64 cd00844 MPP_Dbr1_N Dbr1 RNA la 96.5 0.0043 9.3E-08 66.3 6.4 68 58-126 1-85 (262)
65 cd07383 MPP_Dcr2 Saccharomyces 96.5 0.011 2.5E-07 60.4 9.2 70 56-125 3-87 (199)
66 cd07391 MPP_PF1019 Pyrococcus 96.5 0.005 1.1E-07 61.6 6.3 56 72-127 31-88 (172)
67 cd07390 MPP_AQ1575 Aquifex aeo 96.4 0.0038 8.2E-08 62.2 5.1 67 58-129 1-84 (168)
68 cd07398 MPP_YbbF-LpxH Escheric 96.4 0.003 6.4E-08 65.3 4.0 69 59-128 1-83 (217)
69 PRK11148 cyclic 3',5'-adenosin 96.4 0.0053 1.1E-07 66.3 6.0 70 55-126 14-97 (275)
70 PRK10966 exonuclease subunit S 96.3 0.0055 1.2E-07 69.8 6.2 71 56-127 1-87 (407)
71 cd00840 MPP_Mre11_N Mre11 nucl 96.3 0.0054 1.2E-07 63.4 5.4 73 57-129 1-91 (223)
72 PF03761 DUF316: Domain of unk 96.3 0.025 5.5E-07 61.1 10.7 118 258-407 157-274 (282)
73 TIGR00024 SbcD_rel_arch putati 96.2 0.0093 2E-07 62.4 6.6 69 56-128 15-103 (225)
74 cd07399 MPP_YvnB Bacillus subt 96.1 0.0079 1.7E-07 62.4 5.5 69 57-126 2-81 (214)
75 cd08165 MPP_MPPE1 human MPPE1 96.0 0.0073 1.6E-07 59.5 4.4 46 82-127 38-89 (156)
76 cd07393 MPP_DR1119 Deinococcus 95.8 0.014 2.9E-07 61.5 5.8 65 58-126 1-83 (232)
77 TIGR00583 mre11 DNA repair pro 95.8 0.016 3.4E-07 65.8 6.5 54 55-108 3-68 (405)
78 COG2908 Uncharacterized protei 95.7 0.032 6.9E-07 57.8 7.7 98 60-175 2-115 (237)
79 COG1409 Icc Predicted phosphoh 95.6 0.027 5.9E-07 60.6 7.3 74 56-131 1-82 (301)
80 KOG0376|consensus 95.5 0.007 1.5E-07 68.1 2.4 114 27-142 13-131 (476)
81 cd07401 MPP_TMEM62_N Homo sapi 95.1 0.033 7.2E-07 59.5 5.9 70 58-127 2-89 (256)
82 cd07384 MPP_Cdc1_like Saccharo 94.8 0.062 1.4E-06 53.7 6.5 47 82-128 45-101 (171)
83 cd07386 MPP_DNA_pol_II_small_a 94.8 0.033 7.1E-07 59.0 4.7 67 59-127 2-94 (243)
84 cd00839 MPP_PAPs purple acid p 94.8 0.046 1E-06 59.3 6.0 68 57-128 6-82 (294)
85 cd07395 MPP_CSTP1 Homo sapiens 94.8 0.052 1.1E-06 58.0 6.3 71 57-127 6-99 (262)
86 COG2129 Predicted phosphoester 94.6 0.069 1.5E-06 54.9 6.3 74 55-130 3-80 (226)
87 COG4186 Predicted phosphoester 94.5 0.071 1.5E-06 51.4 5.6 67 58-128 6-87 (186)
88 COG1408 Predicted phosphohydro 94.3 0.058 1.3E-06 58.4 5.4 69 57-127 46-118 (284)
89 cd08166 MPP_Cdc1_like_1 unchar 94.3 0.093 2E-06 53.4 6.3 46 82-127 42-93 (195)
90 cd07380 MPP_CWF19_N Schizosacc 94.3 0.072 1.6E-06 52.1 5.3 66 59-125 1-68 (150)
91 cd00845 MPP_UshA_N_like Escher 93.5 0.087 1.9E-06 55.9 4.7 65 57-126 2-81 (252)
92 PF09342 DUF1986: Domain of un 92.8 0.52 1.1E-05 49.0 8.8 72 225-305 56-130 (267)
93 COG1407 Predicted ICC-like pho 92.2 0.28 6.1E-06 51.1 6.1 101 54-177 18-140 (235)
94 cd08163 MPP_Cdc1 Saccharomyces 91.0 0.59 1.3E-05 50.0 7.2 77 83-170 46-129 (257)
95 PLN02533 probable purple acid 90.8 0.23 4.9E-06 57.2 4.2 71 55-128 139-212 (427)
96 COG0420 SbcD DNA repair exonuc 90.6 0.44 9.5E-06 54.2 6.2 74 56-129 1-90 (390)
97 cd07410 MPP_CpdB_N Escherichia 90.5 0.27 5.8E-06 53.1 4.2 65 57-126 2-94 (277)
98 cd08164 MPP_Ted1 Saccharomyces 89.8 0.41 9E-06 48.7 4.5 65 63-127 24-111 (193)
99 PF14582 Metallophos_3: Metall 89.2 0.34 7.3E-06 50.0 3.3 75 55-129 5-104 (255)
100 cd07408 MPP_SA0022_N Staphyloc 86.6 0.81 1.8E-05 48.8 4.6 65 57-126 2-81 (257)
101 cd07412 MPP_YhcR_N Bacillus su 86.5 0.61 1.3E-05 50.7 3.6 65 57-126 2-87 (288)
102 cd07378 MPP_ACP5 Homo sapiens 86.1 1.2 2.5E-05 47.9 5.5 69 57-127 2-83 (277)
103 PF06874 FBPase_2: Firmicute f 85.5 0.81 1.8E-05 53.7 4.1 48 84-136 186-233 (640)
104 TIGR00282 metallophosphoestera 81.9 2 4.3E-05 46.1 5.0 67 56-127 1-71 (266)
105 cd07411 MPP_SoxB_N Thermus the 81.1 1.9 4.1E-05 46.2 4.6 63 58-126 3-94 (264)
106 cd07409 MPP_CD73_N CD73 ecto-5 78.5 3.2 7E-05 44.9 5.3 65 57-126 2-93 (281)
107 COG1768 Predicted phosphohydro 76.7 3.6 7.8E-05 40.9 4.4 46 80-129 41-88 (230)
108 PRK09419 bifunctional 2',3'-cy 75.1 2.9 6.3E-05 54.4 4.4 65 57-126 662-735 (1163)
109 KOG3662|consensus 74.9 3.6 7.8E-05 46.4 4.5 43 84-126 95-143 (410)
110 cd00842 MPP_ASMase acid sphing 73.4 12 0.00025 40.7 8.1 72 58-129 40-124 (296)
111 KOG2863|consensus 72.1 8.4 0.00018 42.4 6.2 72 56-127 1-88 (456)
112 TIGR02921 PEP_integral PEP-CTE 69.8 45 0.00097 39.2 11.5 74 693-768 81-155 (952)
113 cd07405 MPP_UshA_N Escherichia 67.5 5.1 0.00011 43.5 3.6 65 57-126 2-86 (285)
114 KOG1432|consensus 66.8 9 0.00019 42.0 5.1 89 57-162 55-166 (379)
115 KOG2476|consensus 66.2 8.9 0.00019 43.5 5.1 69 55-124 5-75 (528)
116 COG0737 UshA 5'-nucleotidase/2 66.0 5.6 0.00012 47.0 3.8 68 55-127 26-115 (517)
117 cd07406 MPP_CG11883_N Drosophi 65.4 8.3 0.00018 41.1 4.6 56 66-126 21-82 (257)
118 PF04042 DNA_pol_E_B: DNA poly 64.4 7.9 0.00017 39.7 4.1 72 58-129 1-93 (209)
119 cd07407 MPP_YHR202W_N Saccharo 62.8 7.5 0.00016 42.2 3.7 66 57-127 7-97 (282)
120 COG3752 Steroid 5-alpha reduct 61.9 67 0.0015 33.9 10.1 44 725-771 18-61 (272)
121 cd07382 MPP_DR1281 Deinococcus 59.5 15 0.00033 39.2 5.3 65 57-126 1-69 (255)
122 COG3855 Fbp Uncharacterized pr 57.8 5.2 0.00011 45.1 1.4 47 84-135 192-238 (648)
123 cd08162 MPP_PhoA_N Synechococc 57.1 13 0.00027 41.1 4.3 64 58-126 3-90 (313)
124 PF08321 PPP5: PPP5 TPR repeat 56.8 22 0.00048 31.9 5.0 28 27-54 68-95 (95)
125 PRK09420 cpdB bifunctional 2', 50.3 17 0.00036 44.4 4.2 69 54-127 24-122 (649)
126 COG1311 HYS2 Archaeal DNA poly 49.7 32 0.0007 39.6 6.0 120 57-187 227-372 (481)
127 KOG1187|consensus 49.4 3.6 7.7E-05 46.3 -1.5 142 476-628 122-271 (361)
128 PF14164 YqzH: YqzH-like prote 47.8 42 0.00091 27.8 4.7 47 4-50 1-47 (64)
129 TIGR01390 CycNucDiestase 2',3' 47.1 18 0.0004 43.8 3.9 65 57-126 4-98 (626)
130 COG4214 XylH ABC-type xylose t 47.0 61 0.0013 36.0 7.4 92 721-819 139-235 (394)
131 PRK09419 bifunctional 2',3'-cy 46.9 18 0.00038 47.3 4.0 65 57-126 43-138 (1163)
132 KOG3947|consensus 42.4 29 0.00063 37.1 3.9 63 57-127 63-126 (305)
133 KOG1378|consensus 41.9 24 0.00052 40.5 3.5 73 54-130 146-224 (452)
134 PRK11907 bifunctional 2',3'-cy 41.1 29 0.00063 43.2 4.4 66 56-126 116-212 (814)
135 PF08259 Periviscerokin: Periv 40.8 9.5 0.00021 20.2 0.1 8 694-701 1-8 (11)
136 KOG3339|consensus 40.5 1.1E+02 0.0025 30.8 7.5 85 84-173 40-140 (211)
137 TIGR01530 nadN NAD pyrophospha 37.0 47 0.001 39.7 5.2 64 58-126 3-93 (550)
138 PTZ00235 DNA polymerase epsilo 36.3 67 0.0014 34.9 5.6 72 56-127 28-122 (291)
139 PF05297 Herpes_LMP1: Herpesvi 36.0 12 0.00026 39.8 0.0 34 685-718 17-51 (381)
140 KOG0192|consensus 36.0 7.8 0.00017 43.6 -1.5 140 475-622 89-233 (362)
141 COG3256 NorB Nitric oxide redu 35.5 2.8E+02 0.006 33.2 10.6 78 724-816 488-566 (717)
142 PF04246 RseC_MucC: Positive r 35.3 1.8E+02 0.004 27.5 8.1 55 719-795 69-123 (135)
143 PRK09558 ushA bifunctional UDP 34.5 39 0.00084 40.4 3.9 67 56-127 35-121 (551)
144 KOG3325|consensus 33.1 1.2E+02 0.0026 29.6 6.1 99 58-193 3-107 (183)
145 TIGR02921 PEP_integral PEP-CTE 31.5 4E+02 0.0087 31.8 10.9 106 690-802 20-141 (952)
146 PTZ00422 glideosome-associated 30.5 58 0.0012 37.0 4.2 70 57-126 28-108 (394)
147 PRK11281 hypothetical protein; 30.2 2.5E+02 0.0055 36.5 10.2 24 799-822 682-706 (1113)
148 KOG4721|consensus 28.7 7.7 0.00017 45.3 -3.0 94 475-572 162-257 (904)
149 COG4393 Predicted membrane pro 28.1 2.8E+02 0.006 30.6 8.5 19 723-741 85-103 (405)
150 KOG2310|consensus 26.7 1.1E+02 0.0023 36.0 5.4 51 55-105 13-75 (646)
151 PRK09418 bifunctional 2',3'-cy 26.6 66 0.0014 40.1 4.1 67 55-126 39-141 (780)
152 PF05313 Pox_P21: Poxvirus P21 25.8 5.5E+02 0.012 25.9 9.4 75 694-770 48-132 (189)
153 PF14589 NrfD_2: Polysulfide r 25.6 5E+02 0.011 26.1 9.1 73 683-761 80-152 (251)
154 PLN02434 fatty acid hydroxylas 25.6 7.9E+02 0.017 26.0 11.3 59 748-806 129-199 (237)
155 PF13258 DUF4049: Domain of un 23.2 2.2E+02 0.0047 29.9 6.3 13 115-127 128-140 (318)
156 cd07387 MPP_PolD2_C PolD2 (DNA 22.9 2E+02 0.0044 30.8 6.5 47 85-131 45-111 (257)
157 PF11239 DUF3040: Protein of u 22.8 1.7E+02 0.0038 25.3 5.0 38 750-787 37-76 (82)
158 TIGR02037 degP_htrA_DO peripla 22.3 6.9E+02 0.015 28.7 11.3 39 260-305 103-141 (428)
159 KOG0918|consensus 21.2 2.6 5.6E-05 46.8 -8.2 95 84-184 49-147 (476)
160 PRK00068 hypothetical protein; 20.9 6.3E+02 0.014 32.3 10.9 13 756-768 218-230 (970)
161 TIGR00905 2A0302 transporter, 20.6 1E+03 0.022 27.5 12.5 46 775-822 421-466 (473)
162 PRK00293 dipZ thiol:disulfide 20.4 9E+02 0.02 29.0 12.0 42 688-729 290-338 (571)
163 COG1272 Predicted membrane pro 20.4 1E+03 0.022 25.0 11.4 88 734-823 121-222 (226)
164 PF04070 DUF378: Domain of unk 20.3 1E+02 0.0022 25.4 2.7 18 724-741 5-22 (62)
No 1
>KOG0372|consensus
Probab=100.00 E-value=5.1e-54 Score=424.92 Aligned_cols=220 Identities=49% Similarity=0.892 Sum_probs=211.0
Q ss_pred CHHHHHHHHHccccCCCCcccCCHHHHHHHHHHHHHHHhcCCCceeeCCCeeEEecCCCCHHHHHHHHHhCCCCCCCccc
Q psy17085 8 NLDSIINRLIDIDARSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYPPKSRYL 87 (826)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~i~viGDIHG~~~~L~~~l~~~g~~~~~~~v 87 (826)
++|+.+++|.+. ..+.+.++..||.++.++|.+|++++.++.|++|+||||||++||+.+|+..|-+++++|+
T Consensus 2 dldr~ie~L~~~-------~li~E~eV~~LC~~~~eiL~~E~NV~~i~tPvtvcGDIHGQf~Dllelf~igG~~~~t~YL 74 (303)
T KOG0372|consen 2 DLDRQIEQLRRC-------ELIAESEVKALCAKVREILVEESNVQRIDTPVTVCGDIHGQFYDLLELFRIGGDVPETNYL 74 (303)
T ss_pred cHHHHHHHHHhc-------CCCcHHHHHHHHHHHHHHHhcCCCceecCCCcEEeecccchHHHHHHHHHhCCCCCCCceE
Confidence 488999999764 4589999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhhCChHHHHHHH-hHHHHHHHHHHHhcCCcEEEECC
Q psy17085 88 FLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRY-NVKLWKTFTECFNCMPVAAIVDE 166 (826)
Q Consensus 88 flGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~gf~~e~~~~~-~~~~~~~~~~~f~~LPl~~~i~~ 166 (826)
|||||||||.+|+|++.+|++||++||+++.+||||||.+.++..|||++||.+|| +.++|+...+.|++||++|+|++
T Consensus 75 FLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqitqvYGFY~EclrKYG~~~vWr~c~eiFdyL~l~aiid~ 154 (303)
T KOG0372|consen 75 FLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSANVWRYCTEIFDYLSLAAIIDG 154 (303)
T ss_pred eecchhccccchHHHHHHHHHHhhcCcceeEEeeccchhhhhhhhhhHHHHHHHHcCChHHHHHHHHHHHhhhHhheecC
Confidence 99999999999999999999999999999999999999999999999999999999 67999999999999999999999
Q ss_pred cEEEEeCCCCCCcCCHHHHhhccCCCCCCCCCcccccccCCcccchhchhcccceeeEEEEEEEcceeccccc
Q psy17085 167 KIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYLSSQL 239 (826)
Q Consensus 167 ~il~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~dllWsdP~~~~~~~~~~~RG~g~~l~V~~G~~~~~~~~ 239 (826)
++||||||++|++.++++|+.+.|..++|+.+.+||||||||++. .+|..||||.||+ ||.+.+.++.
T Consensus 155 kifCVHGGlSP~i~~lDqIr~lDR~~Eiph~g~m~DllWSDPee~-~g~~~SPRGaGyl----FG~dvv~~F~ 222 (303)
T KOG0372|consen 155 KIFCVHGGLSPSIQTLDQIRVLDRKQEVPHDGAMCDLLWSDPEEG-PGWGLSPRGAGYL----FGEDVVESFL 222 (303)
T ss_pred cEEEEcCCCCcchhhHHHHHHhhccccCCCCCcchheeccCcccC-CCcccCCCCcccc----ccHHHHHHHH
Confidence 999999999999999999999999999999999999999999976 5999999999999 9998876654
No 2
>KOG0373|consensus
Probab=100.00 E-value=1.3e-49 Score=386.88 Aligned_cols=221 Identities=44% Similarity=0.859 Sum_probs=210.0
Q ss_pred cCHHHHHHHHHccccCCCCcccCCHHHHHHHHHHHHHHHhcCCCceeeCCCeeEEecCCCCHHHHHHHHHhCCCCCCCcc
Q psy17085 7 LNLDSIINRLIDIDARSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYPPKSRY 86 (826)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~i~viGDIHG~~~~L~~~l~~~g~~~~~~~ 86 (826)
.++|.-|+..-. +..++++++..||+-+++++.+|.++..++.|+.|+|||||+|.||+++|...|--|+++|
T Consensus 4 ~d~d~wi~~vk~-------ckyLpE~elk~LCe~v~d~L~eEsNvqPV~tPVTvCGDIHGQFyDL~eLFrtgG~vP~tnY 76 (306)
T KOG0373|consen 4 MDLDQWIETVKK-------CKYLPENELKRLCEMVKDILMEESNVQPVSTPVTVCGDIHGQFYDLLELFRTGGQVPDTNY 76 (306)
T ss_pred CCHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHHHhhhcCccccCCCeeEeeccchhHHHHHHHHHhcCCCCCcce
Confidence 348888888744 4569999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhhCChHHHHHHH-hHHHHHHHHHHHhcCCcEEEEC
Q psy17085 87 LFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRY-NVKLWKTFTECFNCMPVAAIVD 165 (826)
Q Consensus 87 vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~gf~~e~~~~~-~~~~~~~~~~~f~~LPl~~~i~ 165 (826)
||+|||||||.+|+|++.+|+.||.+||.++.+||||||.+.+...|||++||+.+| +.++|+.+.+.|+.|+++|+|+
T Consensus 77 iFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGnan~wkycckVFD~LtlaAiID 156 (306)
T KOG0373|consen 77 IFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGNANVWKYCCKVFDFLTLAAIID 156 (306)
T ss_pred EEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCCchHHHHHHHHHhhhhHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999 6789999999999999999999
Q ss_pred CcEEEEeCCCCCCcCCHHHHhhccCCCCCCCCCcccccccCCcccchhchhcccceeeEEEEEEEcceeccccc
Q psy17085 166 EKIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYLSSQL 239 (826)
Q Consensus 166 ~~il~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~dllWsdP~~~~~~~~~~~RG~g~~l~V~~G~~~~~~~~ 239 (826)
++++|||||++|++.++++|+.|.|..++|+.|.+|||+||||++ .+.|.-||||.|.+ ||......+.
T Consensus 157 ~~vLCVHGGLSPdirtlDqir~i~R~qEiPh~G~fcDlmWSDPed-ve~W~vSpRGAGwl----FGskVt~eF~ 225 (306)
T KOG0373|consen 157 EKVLCVHGGLSPDIRTLDQIRLIERNQEIPHEGPFCDLMWSDPED-VETWAVSPRGAGWL----FGSKVTTEFN 225 (306)
T ss_pred CcEEEEcCCCCccceeHHHHHhHHhhccCCCCCCccceeccChhh-hhhheeCCCCccee----echhhhHHHH
Confidence 999999999999999999999999999999999999999999996 78999999999999 9987665543
No 3
>KOG0374|consensus
Probab=100.00 E-value=1.7e-47 Score=412.43 Aligned_cols=268 Identities=52% Similarity=0.946 Sum_probs=238.2
Q ss_pred CCCCccCHHHHHHHHHcccc---CCCCcccCCHHHHHHHHHHHHHHHhcCCCceeeCCCeeEEecCCCCHHHHHHHHHhC
Q psy17085 2 SQVDSLNLDSIINRLIDIDA---RSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYG 78 (826)
Q Consensus 2 ~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~i~viGDIHG~~~~L~~~l~~~ 78 (826)
..+....+++++.+++.... .+.....++++++.+||..+.++|..+|++++++.||.|+|||||++.||+++|+..
T Consensus 2 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~ei~~l~~~~~~if~~~~~l~e~~aPV~i~GDiHGq~~DLlrlf~~~ 81 (331)
T KOG0374|consen 2 LSMASLDLDELIRKLLSVGNKKTEKKRQVPLSKSEIIKLCDKAREIFLSQPTLLELSAPVKIVGDIHGQFGDLLRLFDLL 81 (331)
T ss_pred cccchhhHHHHHHHHhhccccCCCcccceeccHHHHHHHHHHHHHHhcCCCceeecCCCEEEEccCcCCHHHHHHHHHhc
Confidence 45566778999999888764 233345599999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhhCChHHHHHHHh-HHHHHHHHHHHh
Q psy17085 79 K-YPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRYN-VKLWKTFTECFN 156 (826)
Q Consensus 79 g-~~~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~gf~~e~~~~~~-~~~~~~~~~~f~ 156 (826)
| +|++++|+|||||||||++|+|++.+|+++|++||++|++||||||.+.++..|||++||.++|+ ..+|..|++.|+
T Consensus 82 g~~pp~~~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yGFydE~~rr~~~~~~w~~F~~~f~ 161 (331)
T KOG0374|consen 82 GSFPPDQNYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECASINRIYGFYDECKRRYGEIKLWKAFNDAFN 161 (331)
T ss_pred CCCCCcccEEEecccccCCccceEEeehhhhhhhhCCceEEEeccccccccccceeeeHHHHHHhcchHHHHHHHHHHHh
Confidence 9 99999999999999999999999999999999999999999999999999999999999999998 699999999999
Q ss_pred cCCcEEEECCcEEEEeCCCCCCcCCHHHHhhccCCCCCCCCCcccccccCCcccchhchhcccceeeEEEEEEEcceecc
Q psy17085 157 CMPVAAIVDEKIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYLS 236 (826)
Q Consensus 157 ~LPl~~~i~~~il~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~dllWsdP~~~~~~~~~~~RG~g~~l~V~~G~~~~~ 236 (826)
.||++|+|+++++|+|||++|.+.++++|+.|.||.+.++.++++||+|+||+....+|.+|.||.++. ||...+.
T Consensus 162 ~mp~~a~i~~kI~CmhGGlsp~l~~~~~i~~i~rp~~~~~~gll~DLlWsdp~~~~~g~~~n~Rg~s~~----fg~~~v~ 237 (331)
T KOG0374|consen 162 CLPLAALIDGKILCMHGGLSPHLKSLDQIRAIPRPTDSPDKGLLCDLLWSDPDDDVPGWEENDRGVSFT----FGPAVVE 237 (331)
T ss_pred hCchhheecceEEEecCCCChhhcChHHHhhccCCcCCCccceeeeeeecCCCCCCCCcccCCCceeeE----ecHHHHH
Confidence 999999999999999999999999999999999999999999999999999999889999999999988 9987766
Q ss_pred ccccc----------c----------cccccccccCCcCCccccCCceEEEEeCcccc
Q psy17085 237 SQLNN----------A----------VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQ 274 (826)
Q Consensus 237 ~~~~~----------~----------~~~V~~ii~HP~Y~~~~~~nDIALLkL~~pv~ 274 (826)
.+... | ......|+.-|+|. ..++|--|++++.+...
T Consensus 238 ~f~~~~~ldlivRaHqvv~dGyeffa~r~lvTIFSAP~Yc-g~~~n~gavm~Vd~~l~ 294 (331)
T KOG0374|consen 238 DFCKKLDLDLIVRAHQVVEDGYEFFAGRKLVTIFSAPNYC-GEFDNAGAVMRVDKNLK 294 (331)
T ss_pred HHHHHhCcceEEEcCccccccceEecCceEEEEecCchhc-cccCCceEEEEECCCCe
Confidence 54321 1 12344566677775 34555568888776654
No 4
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=100.00 E-value=1.8e-46 Score=403.31 Aligned_cols=266 Identities=57% Similarity=1.079 Sum_probs=238.1
Q ss_pred CCccCHHHHHHHHHcccc-CCCCcccCCHHHHHHHHHHHHHHHhcCCCceeeCCCeeEEecCCCCHHHHHHHHHhCCCCC
Q psy17085 4 VDSLNLDSIINRLIDIDA-RSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYPP 82 (826)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~i~viGDIHG~~~~L~~~l~~~g~~~ 82 (826)
+...+++++|++++.... .++....++++++..||+++.++|++||.+++++.+++|+||||||+.+|.++|+..++++
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~ep~ll~i~~~i~vvGDIHG~~~dL~~l~~~~g~~~ 85 (320)
T PTZ00480 6 KGEIDVDNIIERLLSVRGSKPGKNVNLTEAEVRGLCIKARDIFISQPILLELEAPLKICGDVHGQYFDLLRLFEYGGYPP 85 (320)
T ss_pred ccCcCHHHHHHHHHhccccCccccCCCCHHHHHHHHHHHHHHHHhCCceEecCCCeEEEeecccCHHHHHHHHHhcCCCC
Confidence 456679999999998653 2345567999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhhCChHHHHHHHhHHHHHHHHHHHhcCCcEE
Q psy17085 83 KSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAA 162 (826)
Q Consensus 83 ~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~f~~LPl~~ 162 (826)
.++|||||||||||++++|++.+++++|+.+|.++++||||||...++..|||+.|+..+|...+|..+.++|+.||++|
T Consensus 86 ~~~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~~~~~~ygF~~e~~~~y~~~l~~~~~~~F~~LPlaA 165 (320)
T PTZ00480 86 ESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYTIKLWKTFTDCFNCLPVAA 165 (320)
T ss_pred cceEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccchhhhhhhcchHHHHHhhcCHHHHHHHHHHHHhccHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCcEEEEeCCCCCCcCCHHHHhhccCCCCCCCCCcccccccCCcccchhchhcccceeeEEEEEEEcceeccccccc-
Q psy17085 163 IVDEKIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYLSSQLNN- 241 (826)
Q Consensus 163 ~i~~~il~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~dllWsdP~~~~~~~~~~~RG~g~~l~V~~G~~~~~~~~~~- 241 (826)
+|++++||||||++|.+.++++|+.+.||.+.++.++++|+|||||++...+|.+|+||.|+. ||...+..+...
T Consensus 166 iI~~~i~cvHGGI~p~~~~l~~i~~i~rp~~~~~~~~~~dllWSDP~~~~~~~~~s~RG~g~~----FG~~~~~~Fl~~n 241 (320)
T PTZ00480 166 LIDEKILCMHGGLSPELSNLEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWADNERGVSYV----FSQEIVQVFLKKH 241 (320)
T ss_pred eecCcEEEEcCCcCcccCCHHHHhcccCCCCCCccchhhheeecCcccccCCCccCCCCCccc----cCHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999998778999999999999 998877655431
Q ss_pred ---------c----------cccccccccCCcCCccccCCceEEEEeCcccc
Q psy17085 242 ---------A----------VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQ 274 (826)
Q Consensus 242 ---------~----------~~~V~~ii~HP~Y~~~~~~nDIALLkL~~pv~ 274 (826)
| .-.+..++.-|+|. ....|.-|++.+.+...
T Consensus 242 ~l~~IiR~Hq~v~~G~~~~~~~~~iTvFSa~~Y~-~~~~N~ga~l~i~~~~~ 292 (320)
T PTZ00480 242 ELDLICRAHQVVEDGYEFFSKRQLVTLFSAPNYC-GEFDNAGSMMTIDESLM 292 (320)
T ss_pred CCcEEEEcCccccCceEEeCCCcEEEEeCCcccC-CCCCccEEEEEECCCCc
Confidence 1 12345566778885 34567778888876553
No 5
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=100.00 E-value=1.3e-45 Score=394.94 Aligned_cols=260 Identities=47% Similarity=0.912 Sum_probs=231.0
Q ss_pred HHHHHHHHHcccc-CCCCcccCCHHHHHHHHHHHHHHHhcCCCceeeCCCeeEEecCCCCHHHHHHHHHhCCCCCCCccc
Q psy17085 9 LDSIINRLIDIDA-RSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYPPKSRYL 87 (826)
Q Consensus 9 ~~~~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~i~viGDIHG~~~~L~~~l~~~g~~~~~~~v 87 (826)
+|++|+++++... .++....++++++.+||+++.++|++||++++++.|++|+||||||+.+|.++|+..++++.++|+
T Consensus 4 ~~~~i~~~~~~~~~~~~~~~~i~~~~i~~l~~~~~~il~~e~~ll~i~~p~~ViGDIHG~~~~L~~l~~~~~~~~~~~~l 83 (294)
T PTZ00244 4 VQTLIEKMLTVKGNRTQRQILIREEDIRAVLTEVREIFMSQPMLLEIRPPVRVCGDTHGQYYDLLRIFEKCGFPPYSNYL 83 (294)
T ss_pred HHHHHHHHHhcccCCCccccCCCHHHHHHHHHHHHHHHHhCCCeEeccCCceeeccCCCCHHHHHHHHHHcCCCCcccEE
Confidence 6789999988654 334556789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhhCChHHHHHHHhHHHHHHHHHHHhcCCcEEEECCc
Q psy17085 88 FLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEK 167 (826)
Q Consensus 88 flGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~f~~LPl~~~i~~~ 167 (826)
|||||||||++|+|++.+++++|+.+|.+++++|||||...++..|||.+|+..+|+..+|+.+.++|+.||++++++++
T Consensus 84 fLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~y~~~l~~~~~~~f~~lPlaaii~~~ 163 (294)
T PTZ00244 84 FLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRYNIKLFKAFTDVFNTMPVCCVISEK 163 (294)
T ss_pred EeeeEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchHhHhhccChHHHHHHHhhHHHHHHHHHHHHhCchheEecCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCcCCHHHHhhccCCCCCCCCCcccccccCCcccchhchhcccceeeEEEEEEEcceecccccccc-----
Q psy17085 168 IFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYLSSQLNNA----- 242 (826)
Q Consensus 168 il~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~dllWsdP~~~~~~~~~~~RG~g~~l~V~~G~~~~~~~~~~~----- 242 (826)
++|||||++|.+.++++|++++||.+.++.++++|++||||++...+|.+|+||.|+. ||...+..+....
T Consensus 164 il~vHgGi~p~~~~l~~i~~i~rp~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~----fg~~~~~~Fl~~n~l~~i 239 (294)
T PTZ00244 164 IICMHGGLSPDLTSLASVNEIERPCDVPDRGILCDLLWADPEDEVRGFLESDRGVSYL----FGEDIVNDFLDMVDMDLI 239 (294)
T ss_pred eEEEcCCCCchhhHHHHhhhhccccCCCccchhheeeecCcccccCCCCcCCCCCccc----cCHHHHHHHHHHcCCcEE
Confidence 9999999999999999999999999999999999999999998778999999999999 9998776554311
Q ss_pred ---------------cccccccccCCcCCccccCCceEEEEeCccc
Q psy17085 243 ---------------VYPVEKTFLHEKYDKAEIKSDIALLKLGRKV 273 (826)
Q Consensus 243 ---------------~~~V~~ii~HP~Y~~~~~~nDIALLkL~~pv 273 (826)
.-.+-.++.-|+|.. ...|.-|++.+.+..
T Consensus 240 iR~Hq~~~~G~~~~~~~~~iTvfSa~~Y~~-~~~N~~a~l~i~~~~ 284 (294)
T PTZ00244 240 VRAHQVMERGYGFFASRQLVTVFSAPNYCG-EFDNDAAVMNIDDKL 284 (294)
T ss_pred EEcCccccCceEEcCCCeEEEEeCCccccC-CCCceEEEEEECCCC
Confidence 122444555667643 356666777766544
No 6
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=100.00 E-value=1.8e-45 Score=396.35 Aligned_cols=253 Identities=31% Similarity=0.552 Sum_probs=213.4
Q ss_pred ccCHHHHHHHHHccccCCCCcccCCHHHHHHHHHHHHHHHhcCCCceeeCC----CeeEEecCCCCHHHHHHHHHhCCCC
Q psy17085 6 SLNLDSIINRLIDIDARSGRNVNLHESEISALCRVSREIFLSEPMLLELGT----PLKICGDIHGQYLDLLMLFDYGKYP 81 (826)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~----~i~viGDIHG~~~~L~~~l~~~g~~ 81 (826)
...++++++++++.. .++++++.+||++|.++|++||++++++. |++||||||||+.+|.++|+..|++
T Consensus 4 ~~~~~~~i~~~~~~~-------~l~~~~i~~L~~~a~~il~~ep~vl~i~~~~~~~~~vvGDiHG~~~dL~~il~~~g~~ 76 (321)
T cd07420 4 KDHIDALIEAFKEKQ-------LLHAKYVLLILREARKVLKQLPNISRVSTSISKQVTICGDLHGKLDDLFLIFYKNGLP 76 (321)
T ss_pred HHHHHHHHHHHHccC-------CCCHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCeEEEEeCCCCHHHHHHHHHHcCCC
Confidence 445888999987632 48999999999999999999999999976 8999999999999999999999998
Q ss_pred C-CCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhhCChHHHHHHHh---HHHHHHHHHHHhc
Q psy17085 82 P-KSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRYN---VKLWKTFTECFNC 157 (826)
Q Consensus 82 ~-~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~gf~~e~~~~~~---~~~~~~~~~~f~~ 157 (826)
+ .++|+|||||||||++|+||+.+|++||+.+|+++++||||||.+.++..|||++||..+|+ ..+|+.+.++|+.
T Consensus 77 ~~~~~~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yGf~~e~~~~y~~~~~~l~~~~~~~F~~ 156 (321)
T cd07420 77 SPENPYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLHGKKILRLLEDVFSW 156 (321)
T ss_pred CccceEEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcChHHHHHHHhCccHHHHHHHHHHHHHh
Confidence 5 46899999999999999999999999999999999999999999999999999999999996 7899999999999
Q ss_pred CCcEEEECCcEEEEeCCCCCCcCCHHHHhhccCCCC-----CCC----------------------CCcccccccCCccc
Q psy17085 158 MPVAAIVDEKIFCCHGGLSPYLSSIDQIRRISRPTR-----VPE----------------------QGLLCDLLWSDPEK 210 (826)
Q Consensus 158 LPl~~~i~~~il~vHgGi~~~~~~l~~i~~i~r~~~-----~~~----------------------~~~~~dllWsdP~~ 210 (826)
||++|++++++||||||+++ ..++++|+.|+|+.. ++. .++++|+|||||++
T Consensus 157 LPlaaii~~~i~cvHGGi~~-~~~l~~i~~i~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLWSDP~~ 235 (321)
T cd07420 157 LPLATIIDNKILVVHGGISD-STDLDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILDILWSDPKA 235 (321)
T ss_pred CCceEEEcCCEEEEeCCCCC-ccCHHHHHhhhccccccccCCCccccccccccccccccccccccccchhheeeecCCcc
Confidence 99999999999999999996 578999999988421 111 14678999999997
Q ss_pred chhchhcccceeeEEEEEEEcceecccccccc--------------------cccccccccCCcCCccccCCceEEEEeC
Q psy17085 211 AAESQLTIVRQVRFHAEVKLGAHYLSSQLNNA--------------------VYPVEKTFLHEKYDKAEIKSDIALLKLG 270 (826)
Q Consensus 211 ~~~~~~~~~RG~g~~l~V~~G~~~~~~~~~~~--------------------~~~V~~ii~HP~Y~~~~~~nDIALLkL~ 270 (826)
....|.+++||.|+. ||...+..+.... .-.+..++.-|+|. ....|.-|++.+.
T Consensus 236 ~~~~~~~~~RG~g~~----FG~~~~~~Fl~~n~l~~IIR~He~v~~G~~~~~~~~~iTvFSa~nY~-~~~~N~gavl~i~ 310 (321)
T cd07420 236 QKGCKPNTFRGGGCY----FGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCHNNKVITIFSASNYY-EEGSNRGAYIKLG 310 (321)
T ss_pred CCCCCccCCCCCccc----cCHHHHHHHHHHCCCcEEEEcChhhhcceEEecCCeEEEEecCCccC-CCCCccEEEEEEC
Confidence 655577889999999 9998876554311 12234455556664 2345666777665
Q ss_pred c
Q psy17085 271 R 271 (826)
Q Consensus 271 ~ 271 (826)
.
T Consensus 311 ~ 311 (321)
T cd07420 311 P 311 (321)
T ss_pred C
Confidence 4
No 7
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=100.00 E-value=3.3e-45 Score=392.38 Aligned_cols=260 Identities=63% Similarity=1.132 Sum_probs=230.1
Q ss_pred HHHHHHHHHcccc-CCCCcccCCHHHHHHHHHHHHHHHhcCCCceeeCCCeeEEecCCCCHHHHHHHHHhCCCCCCCccc
Q psy17085 9 LDSIINRLIDIDA-RSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYPPKSRYL 87 (826)
Q Consensus 9 ~~~~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~i~viGDIHG~~~~L~~~l~~~g~~~~~~~v 87 (826)
++++|+++++... ..+....++++++.+||+++.++|++||++++++.+++||||||||+.+|.++|+..++++.++||
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~il~~ep~~l~i~~~i~viGDIHG~~~~L~~l~~~~~~~~~~~~l 81 (293)
T cd07414 2 IDSIIERLLEVRGSRPGKNVQLTEAEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYL 81 (293)
T ss_pred HHHHHHHHHhccccCCcccCCCCHHHHHHHHHHHHHHHHhCCCeEecCCceEEEEecCCCHHHHHHHHHhcCCCCcceEE
Confidence 6889999988553 234566799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhhCChHHHHHHHhHHHHHHHHHHHhcCCcEEEECCc
Q psy17085 88 FLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEK 167 (826)
Q Consensus 88 flGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~f~~LPl~~~i~~~ 167 (826)
|||||||||++++|++.+++++|+.+|.++++||||||...++..|||.+|+..+|+..+|..+.++|+.||++|+++++
T Consensus 82 fLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~~~~~~~gf~~e~~~~y~~~l~~~~~~~f~~lPlaa~i~~~ 161 (293)
T cd07414 82 FLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAIIDEK 161 (293)
T ss_pred EEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchhhHhhhcchhhHHHHhhhHHHHHHHHHHHHHhHHHHhhCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCcCCHHHHhhccCCCCCCCCCcccccccCCcccchhchhcccceeeEEEEEEEcceecccccccc-----
Q psy17085 168 IFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYLSSQLNNA----- 242 (826)
Q Consensus 168 il~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~dllWsdP~~~~~~~~~~~RG~g~~l~V~~G~~~~~~~~~~~----- 242 (826)
++|||||++|.+.++++|+.++||.+.++.++++|+|||||+.+..+|.+|+||.|+. ||......+....
T Consensus 162 i~cvHgGi~p~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~----fg~~~~~~Fl~~n~l~~i 237 (293)
T cd07414 162 IFCMHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFT----FGKDVVAKFLNKHDLDLI 237 (293)
T ss_pred EEEEccCCCcccCcHHHHhcccCCCCCCchhhHhhhhccCcccccCCCccCCCCccee----cCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999999999989999999999999998878999999999999 9998776654311
Q ss_pred ---------------cccccccccCCcCCccccCCceEEEEeCccc
Q psy17085 243 ---------------VYPVEKTFLHEKYDKAEIKSDIALLKLGRKV 273 (826)
Q Consensus 243 ---------------~~~V~~ii~HP~Y~~~~~~nDIALLkL~~pv 273 (826)
.-.+..++.-|+|. ....|.-|++.+.+..
T Consensus 238 iR~He~~~~G~~~~~~~~~iTvfSa~~Y~-~~~~N~~a~l~i~~~~ 282 (293)
T cd07414 238 CRAHQVVEDGYEFFAKRQLVTLFSAPNYC-GEFDNAGAMMSVDETL 282 (293)
T ss_pred EECCccccCeEEEeCCCcEEEEecCCccc-CCCCceEEEEEECCCC
Confidence 12233455556664 2345666666665543
No 8
>KOG0375|consensus
Probab=100.00 E-value=8.3e-46 Score=382.42 Aligned_cols=253 Identities=36% Similarity=0.702 Sum_probs=218.2
Q ss_pred HHHHHHHHHccccCCCCcccCCHHHHHHHHHHHHHHHhcCCCceeeCCCeeEEecCCCCHHHHHHHHHhCCCCCCCcccc
Q psy17085 9 LDSIINRLIDIDARSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYPPKSRYLF 88 (826)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~i~viGDIHG~~~~L~~~l~~~g~~~~~~~vf 88 (826)
++-+-++++... ++.++..+.|+.++..+|++|+++++++.||.|+|||||||.||+++|+-.|-|.+++|+|
T Consensus 48 ~~~Lr~Hf~~EG-------rl~ee~alrIi~~~a~llr~Eknmi~v~APiTVCGDIHGQf~DLmKLFEVGG~PA~t~YLF 120 (517)
T KOG0375|consen 48 HDVLRNHFIKEG-------RLEEEQALRIINEGAALLRQEKNMIEVEAPITVCGDIHGQFFDLMKLFEVGGSPANTRYLF 120 (517)
T ss_pred hHHHHHHHHhhc-------chhHHHHHHHHHHHHHHHhcCCceEeccCCeeEecccchHHHHHHHHHHccCCcccceeEe
Confidence 444445555443 3899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhhCChHHHHHHHhHHHHHHHHHHHhcCCcEEEECCcE
Q psy17085 89 LGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKI 168 (826)
Q Consensus 89 lGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~f~~LPl~~~i~~~i 168 (826)
||||||||.+|+||+.+|.+||+.||..+++||||||++.+..++.|..||..+|+.++|+..++.|+.||+||+.++++
T Consensus 121 LGDYVDRGyFSiECvlYLwsLKi~yp~tl~lLRGNHECrHLT~YFTFKqEc~iKYse~vYdaCmesFd~LPLAAlmNqQf 200 (517)
T KOG0375|consen 121 LGDYVDRGYFSIECVLYLWSLKINYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMESFDCLPLAALMNQQF 200 (517)
T ss_pred eccccccceeeeehHHHHHHHhcCCCCeEEEecCCcchhhhHhHhhHHHHHhHhccHHHHHHHHHHhccchHHHHhcCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCcCCHHHHhhccCCCCCCCCCcccccccCCcccch------hchh-cccceeeEEEEEEEcceecccccc-
Q psy17085 169 FCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPEKAA------ESQL-TIVRQVRFHAEVKLGAHYLSSQLN- 240 (826)
Q Consensus 169 l~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~dllWsdP~~~~------~~~~-~~~RG~g~~l~V~~G~~~~~~~~~- 240 (826)
+|||||++|.+.++++|+.+.|+.++|..|.+|||||+||.++- +.|. ++.||++|. +.-...-.+..
T Consensus 201 lCVHGGlSPEi~tl~DIr~l~RF~EpPa~GpmCDLLWsDPlEdfgnek~~e~f~hNsvRGCSyf----ysy~A~C~FLq~ 276 (517)
T KOG0375|consen 201 LCVHGGLSPEIHTLDDIRKLDRFKEPPAFGPMCDLLWSDPLEDFGNEKTSEHFTHNSVRGCSYF----YSYPAVCEFLQN 276 (517)
T ss_pred EEecCCCCcccccHHHHHhhhhccCCCccCcchhhhccChhhhccccccccccccCccccccce----echHHHHHHHHh
Confidence 99999999999999999999999999999999999999997642 2343 346999998 43222111110
Q ss_pred ----------------------cc---cccccccccCCcCCccccCCceEEEEeCccc
Q psy17085 241 ----------------------NA---VYPVEKTFLHEKYDKAEIKSDIALLKLGRKV 273 (826)
Q Consensus 241 ----------------------~~---~~~V~~ii~HP~Y~~~~~~nDIALLkL~~pv 273 (826)
.| .-+...|+.-|+|- +.+.|.-|+||-...|
T Consensus 277 nnLLSIiRAHEAQDaGYRMYrksqttGFPSLiTiFSAPNYL-DvYnNKAAvLKYEnNV 333 (517)
T KOG0375|consen 277 NNLLSIIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYL-DVYNNKAAVLKYENNV 333 (517)
T ss_pred CCchhhhhhhhhhhhhhhhhhcccccCCchheeeecCCchh-hhhccHHHHhhhhccc
Confidence 11 13355678889984 4677888888866554
No 9
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=1.7e-44 Score=387.34 Aligned_cols=253 Identities=39% Similarity=0.754 Sum_probs=225.0
Q ss_pred CHHHHHHHHHccccCCCCcccCCHHHHHHHHHHHHHHHhcCCCceeeCCCeeEEecCCCCHHHHHHHHHhCCCCCCCccc
Q psy17085 8 NLDSIINRLIDIDARSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYPPKSRYL 87 (826)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~i~viGDIHG~~~~L~~~l~~~g~~~~~~~v 87 (826)
+++++++++++.. .++++++.+||++|.++|++||++++++.|++|+||||||+.+|.++|+..+.++.++|+
T Consensus 2 ~~~~~~~~~~~~~-------~l~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~~L~~l~~~~~~~~~~~~l 74 (303)
T PTZ00239 2 DIDRHIATLLNGG-------CLPERDLKLICERAKEIFLEESNVQPVRAPVNVCGDIHGQFYDLQALFKEGGDIPNANYI 74 (303)
T ss_pred CHHHHHHHHHccC-------CCCHHHHHHHHHHHHHHHHhCCCeEecCCCEEEEEeCCCCHHHHHHHHHhcCCCCCceEE
Confidence 3889999997632 489999999999999999999999999999999999999999999999999998899999
Q ss_pred ccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhhCChHHHHHHHh-HHHHHHHHHHHhcCCcEEEECC
Q psy17085 88 FLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRYN-VKLWKTFTECFNCMPVAAIVDE 166 (826)
Q Consensus 88 flGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~gf~~e~~~~~~-~~~~~~~~~~f~~LPl~~~i~~ 166 (826)
|||||||||++++|++.+++++|+.+|.++++||||||.+.++..|||.+|+..+|+ ..+|+.+.++|+.||+++++++
T Consensus 75 fLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~ky~~~~~~~~~~~~f~~LPlaaii~~ 154 (303)
T PTZ00239 75 FIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFYEEILRKYGNSNPWRLFMDVFDCLPLAALIEG 154 (303)
T ss_pred EeeeEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcChHHHHHHHhcChhHHHHHHHHHHhCchheEEcC
Confidence 999999999999999999999999999999999999999999999999999999996 4789999999999999999999
Q ss_pred cEEEEeCCCCCCcCCHHHHhhccCCCCCCCCCcccccccCCcccchhchhcccceeeEEEEEEEcceeccccccc-----
Q psy17085 167 KIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYLSSQLNN----- 241 (826)
Q Consensus 167 ~il~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~dllWsdP~~~~~~~~~~~RG~g~~l~V~~G~~~~~~~~~~----- 241 (826)
+++|||||++|.+.++++|+.|+||.+.+..+.++|+|||||++ ..+|.+|+||.|+. ||...+..+...
T Consensus 155 ~i~cvHgGi~p~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~-~~~~~~~~Rg~g~~----fg~~~~~~Fl~~n~l~~ 229 (303)
T PTZ00239 155 QILCVHGGLSPDMRTIDQIRTIDRKIEIPHEGPFCDLMWSDPEE-VEYWAVNSRGAGYL----FGAKVTKEFCRLNDLTL 229 (303)
T ss_pred eEEEEcCccCcccccHhhhccccCCCCCCCCCCceeeEecCccc-cCCCccCCCCCccc----cCHHHHHHHHHHCCCcE
Confidence 99999999999999999999999999999999999999999985 46899999999999 999877655321
Q ss_pred -----c------c-----ccccccccCCcCCccccCCceEEEEeCccc
Q psy17085 242 -----A------V-----YPVEKTFLHEKYDKAEIKSDIALLKLGRKV 273 (826)
Q Consensus 242 -----~------~-----~~V~~ii~HP~Y~~~~~~nDIALLkL~~pv 273 (826)
| . -.+..++.-|+|. ....|.-|++.+.+..
T Consensus 230 iiR~He~~~~G~~~~~~~~~~iTvfSa~~Y~-~~~~N~~ail~i~~~~ 276 (303)
T PTZ00239 230 ICRAHQLVMEGYKYWFPDQNLVTVWSAPNYC-YRCGNIASILCLDENL 276 (303)
T ss_pred EEEcChhhccceEEEeCCCeEEEEECCCccc-CCCCceEEEEEECCCC
Confidence 1 0 1144556667774 3456677788777654
No 10
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=100.00 E-value=1.4e-44 Score=386.06 Aligned_cols=251 Identities=43% Similarity=0.806 Sum_probs=222.7
Q ss_pred HHHHHHHHHccccCCCCcccCCHHHHHHHHHHHHHHHhcCCCceeeCCCeeEEecCCCCHHHHHHHHHhCCCCCCCcccc
Q psy17085 9 LDSIINRLIDIDARSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYPPKSRYLF 88 (826)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~i~viGDIHG~~~~L~~~l~~~g~~~~~~~vf 88 (826)
++++++++++.. .++++++.+||++|.++|++||++++++.+++|+||||||+.+|.++|+..++++.++|||
T Consensus 2 ~~~~~~~~~~~~-------~l~~~~~~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~dL~~ll~~~~~~~~~~~lf 74 (285)
T cd07415 2 LDKWIEQLKKCE-------LLPESEVKSLCEKAKEILVKESNVQRVRSPVTVCGDIHGQFYDLLELFRVGGDPPDTNYLF 74 (285)
T ss_pred HHHHHHHHHccC-------CCCHHHHHHHHHHHHHHHHhCCCEEecCCCEEEEEeCCCCHHHHHHHHHHcCCCCCCeEEE
Confidence 678889987632 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhhCChHHHHHHHh-HHHHHHHHHHHhcCCcEEEECCc
Q psy17085 89 LGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRYN-VKLWKTFTECFNCMPVAAIVDEK 167 (826)
Q Consensus 89 lGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~gf~~e~~~~~~-~~~~~~~~~~f~~LPl~~~i~~~ 167 (826)
||||||||++|+|++.+++++|+.+|+++++||||||...++..|||.+|+..+|+ ..+|..+.++|++||++|+++++
T Consensus 75 LGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ygf~~e~~~~y~~~~l~~~~~~~f~~lPlaaii~~~ 154 (285)
T cd07415 75 LGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFYDECLRKYGNANVWKYCTDLFDYLPLAALIDNQ 154 (285)
T ss_pred EeEECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhcchhHHHHHhcCchHHHHHHHHHHHHhHHHhEeCCe
Confidence 99999999999999999999999999999999999999999999999999999996 58999999999999999999999
Q ss_pred EEEEeCCCCCCcCCHHHHhhccCCCCCCCCCcccccccCCcccchhchhcccceeeEEEEEEEcceecccccccc-----
Q psy17085 168 IFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYLSSQLNNA----- 242 (826)
Q Consensus 168 il~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~dllWsdP~~~~~~~~~~~RG~g~~l~V~~G~~~~~~~~~~~----- 242 (826)
++|||||++|.+.++++|+.|+||.+.+..++++|+|||||++. .+|.+|+||.|+. ||...+..+....
T Consensus 155 i~cvHgGi~p~~~~~~~i~~i~r~~~~~~~~~~~dllWsDP~~~-~~~~~~~Rg~g~~----fg~~~~~~Fl~~n~l~~i 229 (285)
T cd07415 155 IFCVHGGLSPSIDTLDQIRAIDRFQEVPHEGPMCDLLWSDPDDI-EGWGISPRGAGYL----FGQDVVEEFNHNNGLTLI 229 (285)
T ss_pred EEEEcCCCCCCcccHHHhhcccCCCCCCCCCCccceEecCCCcc-CCCCcCCCCCccc----cCHHHHHHHHHHCCCeEE
Confidence 99999999999999999999999999888999999999999975 7899999999999 9998776654311
Q ss_pred ---------------cccccccccCCcCCccccCCceEEEEeCcc
Q psy17085 243 ---------------VYPVEKTFLHEKYDKAEIKSDIALLKLGRK 272 (826)
Q Consensus 243 ---------------~~~V~~ii~HP~Y~~~~~~nDIALLkL~~p 272 (826)
.-.+-.++.-|+|. ....|.-|++.+.+.
T Consensus 230 iR~He~~~~G~~~~~~~~~~TvfSa~~y~-~~~~n~~a~l~i~~~ 273 (285)
T cd07415 230 CRAHQLVMEGYQWMFDDKLVTVWSAPNYC-YRCGNVASIMELDEH 273 (285)
T ss_pred EEcCccccceEEEecCCcEEEEecCCccc-CCCCceEEEEEECCC
Confidence 12234455556664 234566667766543
No 11
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=100.00 E-value=1.8e-43 Score=381.52 Aligned_cols=221 Identities=40% Similarity=0.787 Sum_probs=205.2
Q ss_pred CHHHHHHHHHccccCCCCcccCCHHHHHHHHHHHHHHHhcCCCceeeCCCeeEEecCCCCHHHHHHHHHhCCCCCCCccc
Q psy17085 8 NLDSIINRLIDIDARSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYPPKSRYL 87 (826)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~i~viGDIHG~~~~L~~~l~~~g~~~~~~~v 87 (826)
+++-+++++.+.. .++++++.+||++|.++|++||++++++.+++|+||||||+.+|.++|+..+.++.++|+
T Consensus 2 ~~~~~~~~~~~~~-------~l~~~~i~~l~~~~~~il~~e~~l~~i~~~i~ViGDIHG~~~dL~~l~~~~g~~~~~~yl 74 (305)
T cd07416 2 RIDVLKAHFMREG-------RLSEEDALRIITEGAEILRQEPNLLRIEAPVTVCGDIHGQFYDLLKLFEVGGSPANTRYL 74 (305)
T ss_pred CHHHHHHHHHcCC-------CCCHHHHHHHHHHHHHHHHhCCCeEccCCCEEEEEeCCCCHHHHHHHHHhcCCCCCceEE
Confidence 4677888887543 389999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhhCChHHHHHHHhHHHHHHHHHHHhcCCcEEEECCc
Q psy17085 88 FLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEK 167 (826)
Q Consensus 88 flGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~f~~LPl~~~i~~~ 167 (826)
|||||||||++|+|++.+|+++|+.+|+++++||||||...++..|||.+|+..+|...+|..+.++|+.||++++++++
T Consensus 75 FLGDyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~y~~~l~~~~~~~f~~LPlaaii~~~ 154 (305)
T cd07416 75 FLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMEAFDCLPLAALMNQQ 154 (305)
T ss_pred EECCccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHHHHHHhhCchhHHHHhccHHHHHHHHHHHhhccceeEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCcCCHHHHhhccCCCCCCCCCcccccccCCcccchh------chhcc-cceeeEEEEEEEcceeccccc
Q psy17085 168 IFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAE------SQLTI-VRQVRFHAEVKLGAHYLSSQL 239 (826)
Q Consensus 168 il~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~dllWsdP~~~~~------~~~~~-~RG~g~~l~V~~G~~~~~~~~ 239 (826)
++|+|||++|.+.++++|++|+|+.+.++.++++|+|||||.+... +|.+| +||.|+. ||...+..+.
T Consensus 155 i~~vHGGi~p~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~~~Rg~g~~----fG~~~~~~Fl 229 (305)
T cd07416 155 FLCVHGGLSPELKTLDDIRKLDRFREPPAFGPMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCSYF----YSYRAVCEFL 229 (305)
T ss_pred EEEEcCCCCcccccHHHhcccCCCCCCCCCCcceeeeecCcccccccccccccccccCCCCCcee----cCHHHHHHHH
Confidence 9999999999999999999999999888899999999999976433 47765 8999999 9998776554
No 12
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=100.00 E-value=1.7e-43 Score=376.57 Aligned_cols=239 Identities=45% Similarity=0.850 Sum_probs=213.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCceeeCCCeeEEecCCCCHHHHHHHHHhCCCCCCCcccccCcccCCCCCcHHHHHHHHH
Q psy17085 29 LHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLA 108 (826)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~ep~~l~~~~~i~viGDIHG~~~~L~~~l~~~g~~~~~~~vflGD~VDrG~~s~evl~ll~~ 108 (826)
++++++.+||+++.++|++||++++++++++|+||||||+.+|.++|+..+.++.++|||||||||||++++|++.++++
T Consensus 1 ~~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDiHG~~~~l~~ll~~~~~~~~~~~vfLGD~VDrG~~s~e~l~~l~~ 80 (271)
T smart00156 1 LYAEEILELLREVKEIFRQEPNLVEVSAPVTVCGDIHGQFDDLLRLFDLNGPPPDTNYVFLGDYVDRGPFSIEVILLLFA 80 (271)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEeCCCEEEEEeCcCCHHHHHHHHHHcCCCCCceEEEeCCccCCCCChHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCcEEEECCCChhhhhHhhhCChHHHHHHHhHHHHHHHHHHHhcCCcEEEECCcEEEEeCCCCCCcCCHHHHhhc
Q psy17085 109 YKIKYPGMFHLLRGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIRRI 188 (826)
Q Consensus 109 lk~~~p~~v~~lrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~f~~LPl~~~i~~~il~vHgGi~~~~~~l~~i~~i 188 (826)
+|+.+|.++++||||||...++..|||.+|+..+|+.++|+.+.++|+.||++++++++++|||||++|.+.++++|++|
T Consensus 81 lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~l~~~~~~~f~~LPl~aii~~~~~~vHgGi~~~~~~l~~i~~i 160 (271)
T smart00156 81 LKILYPNRVVLLRGNHESRSMNEIYGFYDECKRKYGEEIYEKFQEAFSWLPLAALIDNKILCMHGGLSPDLTTLDDIRKL 160 (271)
T ss_pred HHhcCCCCEEEEeccccHHHHHHhccchhhhhhhcCHHHHHHHHHHHhhChhheEEcCeEEEEecCCCCccCCHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcccccccCCcccchhchhcccceeeEEEEEEEcceecccccccc--------------------cccccc
Q psy17085 189 SRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYLSSQLNNA--------------------VYPVEK 248 (826)
Q Consensus 189 ~r~~~~~~~~~~~dllWsdP~~~~~~~~~~~RG~g~~l~V~~G~~~~~~~~~~~--------------------~~~V~~ 248 (826)
+||.+.++.+.++|+|||||+....+|.+|+||.|+. ||......+.... .-.+..
T Consensus 161 ~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~----fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~T 236 (271)
T smart00156 161 KRPQEPPDEGLLIDLLWSDPDQPVDGFQPSIRGASYY----FGPDAVDEFLKKNNLKLIIRAHQVVDDGYEFFHDRKLVT 236 (271)
T ss_pred cCCCCCCchhhhhheeecCCCcccCCCccCCCCCccc----cCHHHHHHHHHHCCCeEEEecCcccCCcEEEecCCcEEE
Confidence 9999888899999999999987778999999999999 9987776554311 122344
Q ss_pred cccCCcCCccccCCceEEEEeCcc
Q psy17085 249 TFLHEKYDKAEIKSDIALLKLGRK 272 (826)
Q Consensus 249 ii~HP~Y~~~~~~nDIALLkL~~p 272 (826)
++.-|+|. ....|.-|++.+...
T Consensus 237 vfSa~~y~-~~~~n~~a~~~i~~~ 259 (271)
T smart00156 237 IFSAPNYC-GRFGNKAAVLKVDKD 259 (271)
T ss_pred EECCcccc-cCCCceEEEEEECCC
Confidence 45556663 234566666666554
No 13
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=100.00 E-value=3.2e-43 Score=380.06 Aligned_cols=255 Identities=36% Similarity=0.655 Sum_probs=223.3
Q ss_pred CCccCHHHHHHHHHccccCCCCcccCCHHHHHHHHHHHHHHHhcCCCceeeCCC----eeEEecCCCCHHHHHHHHHhCC
Q psy17085 4 VDSLNLDSIINRLIDIDARSGRNVNLHESEISALCRVSREIFLSEPMLLELGTP----LKICGDIHGQYLDLLMLFDYGK 79 (826)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~----i~viGDIHG~~~~L~~~l~~~g 79 (826)
+....++++++++.... .++++++.+||+++.++|++||++++++.| ++||||||||+.+|.++|+..|
T Consensus 11 i~~~~~~~~~~~~~~~~-------~l~~~~~~~l~~~~~~il~~ep~l~~i~~p~~~~~~VvGDIHG~~~dL~~ll~~~g 83 (316)
T cd07417 11 VTLEFVKEMIEWFKDQK-------KLHKKYAYQILLQVKELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFELNG 83 (316)
T ss_pred CCHHHHHHHHHHHHccC-------CCCHHHHHHHHHHHHHHHHhCCcceeccCCCCceeEEeecccCCHHHHHHHHHhcC
Confidence 34455788888886632 488999999999999999999999999865 9999999999999999999999
Q ss_pred CCCC-CcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhhCChHHHHHHHhHHHHHHHHHHHhcC
Q psy17085 80 YPPK-SRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCM 158 (826)
Q Consensus 80 ~~~~-~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~f~~L 158 (826)
+++. ++|+|||||||||++|+||+.+++++|+.+|+++++||||||...++..|||..|+..+|+..+|..+.++|+.|
T Consensus 84 ~~~~~~~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~~~~~~gf~~e~~~k~~~~l~~~~~~~f~~L 163 (316)
T cd07417 84 LPSETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKYNEQMFDLFSEVFNWL 163 (316)
T ss_pred CCCccCeEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchHHHHHHhhhcchhhhcccHHHHHHHHHHHHhc
Confidence 8764 579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEECCcEEEEeCCC-CCCcCCHHHHhhccCCCCCCCCCcccccccCCcccchhchhcccceeeEEEEEEEcceeccc
Q psy17085 159 PVAAIVDEKIFCCHGGL-SPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYLSS 237 (826)
Q Consensus 159 Pl~~~i~~~il~vHgGi-~~~~~~l~~i~~i~r~~~~~~~~~~~dllWsdP~~~~~~~~~~~RG~g~~l~V~~G~~~~~~ 237 (826)
|++++++++++|||||+ ++...++++|+.++|+.+.++.++++|+|||||++. .+|.+|+||.|+. ||...+..
T Consensus 164 Plaaii~~~~~~vHgGi~~~~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~-~~~~~s~Rg~g~~----fg~~~~~~ 238 (316)
T cd07417 164 PLAHLINGKVLVVHGGLFSDDGVTLDDIRKIDRFRQPPDSGLMCELLWSDPQPQ-PGRSPSKRGVGCQ----FGPDVTKR 238 (316)
T ss_pred hHhheeCCeEEEEccccccCCCccHHHhhcccCCCCCCccccceeeeecCCCCC-CCCCccCCCCceE----eCHHHHHH
Confidence 99999999999999999 567889999999999998888999999999999965 5899999999999 99987765
Q ss_pred cccc----------c----------cccccccccCCcCCccccCCceEEEEeCc
Q psy17085 238 QLNN----------A----------VYPVEKTFLHEKYDKAEIKSDIALLKLGR 271 (826)
Q Consensus 238 ~~~~----------~----------~~~V~~ii~HP~Y~~~~~~nDIALLkL~~ 271 (826)
+... + .-.+-.++.-|+|. ....|.-|++.+.+
T Consensus 239 Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~Y~-~~~~N~ga~~~i~~ 291 (316)
T cd07417 239 FLEENNLEYIIRSHEVKDEGYEVEHDGKCITVFSAPNYC-DQMGNKGAFIRITG 291 (316)
T ss_pred HHHHcCCcEEEECCcccceeEEEecCCeEEEEeCCcccc-CCCCcceEEEEEeC
Confidence 5321 1 12344566677874 34567778888876
No 14
>KOG0371|consensus
Probab=100.00 E-value=2.5e-43 Score=351.30 Aligned_cols=218 Identities=44% Similarity=0.873 Sum_probs=205.0
Q ss_pred HHHHHHHHHccccCCCCcccCCHHHHHHHHHHHHHHHhcCCCceeeCCCeeEEecCCCCHHHHHHHHHhCCCCCCCcccc
Q psy17085 9 LDSIINRLIDIDARSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYPPKSRYLF 88 (826)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~i~viGDIHG~~~~L~~~l~~~g~~~~~~~vf 88 (826)
++.-+++|.. +..+++.++..+|..|.++|++|.++..+.-|++|+||+||||++|+++|+..|..++.+|+|
T Consensus 20 vd~~ie~L~~-------ck~lse~~v~~lc~~a~~~L~~e~nV~~v~~pvtvcGDvHGqf~dl~ELfkiGG~~pdtnylf 92 (319)
T KOG0371|consen 20 VDPWIEQLYK-------CKPLSEVDVSSLCLLAKEILDKEENVQPVNCPVTVCGDVHGQFHDLIELFKIGGLAPDTNYLF 92 (319)
T ss_pred cccchHHHHh-------cCCCccccchhHHHHHHHHHhccccccccccceEEecCcchhHHHHHHHHHccCCCCCcceee
Confidence 5566666654 456899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhhCChHHHHHHH-hHHHHHHHHHHHhcCCcEEEECCc
Q psy17085 89 LGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRY-NVKLWKTFTECFNCMPVAAIVDEK 167 (826)
Q Consensus 89 lGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~gf~~e~~~~~-~~~~~~~~~~~f~~LPl~~~i~~~ 167 (826)
+|||||||++|.|++.+|.++|++||++|.+||||||.+.+...|||++||.+|| +..+|..|.+.|+++|+.+.|+++
T Consensus 93 mGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsrqitqvygfydeclRkyg~anvw~~Ftdlfdy~P~tali~~~ 172 (319)
T KOG0371|consen 93 MGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESK 172 (319)
T ss_pred eeeecccccchHHHHHHHHHhhccccceeEEecCchHHHHHHHHHhhHHHHHhhcccccchHHhhhhhhccchHhhhccc
Confidence 9999999999999999999999999999999999999999999999999999999 789999999999999999999999
Q ss_pred EEEEeCCCCCCcCCHHHHhhccCCCCCCCCCcccccccCCcccchhchhcccceeeEEEEEEEcceecccc
Q psy17085 168 IFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYLSSQ 238 (826)
Q Consensus 168 il~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~dllWsdP~~~~~~~~~~~RG~g~~l~V~~G~~~~~~~ 238 (826)
+||.|||++|.+.+++.++.+.|-.++|.++.+|||||+||++. -+|..+|||.|+. ||.....++
T Consensus 173 ifc~HGgLspsi~tld~~r~~dr~~evphegpmcDlLwsdpddr-~gwg~sprgag~t----fg~di~~~f 238 (319)
T KOG0371|consen 173 IFCLHGGLSPSIDTLDLIRLLDRIQEVPHEGPMCDLLWSDPDDR-CGWGISPRGAGYT----FGQDISEQF 238 (319)
T ss_pred eeeccCCcCcccchHHHHHHHHHhhcccCCCChhheeccCcccC-CCCCCCCCCCCcc----cchhhHHHh
Confidence 99999999999999999999999889999999999999999975 6999999999999 998654433
No 15
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=100.00 E-value=9.9e-42 Score=369.69 Aligned_cols=258 Identities=40% Similarity=0.708 Sum_probs=216.3
Q ss_pred HHHHHHcccc---CCCCcccCCHHHHHHHHHHHHHHHhcCCCceeeCCCeeEEecCCCCHHHHHHHHHhCCCCCC-----
Q psy17085 12 IINRLIDIDA---RSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYPPK----- 83 (826)
Q Consensus 12 ~~~~l~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~i~viGDIHG~~~~L~~~l~~~g~~~~----- 83 (826)
+|+++++... .......++++++.+||++|.++|++||.+++++.+++||||||||+++|.++|+..++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~il~~e~~~~~i~~~~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~ 80 (311)
T cd07419 1 IITHLLKPRIWKPPTDRRFFFNWNEILELCDAAEDIFKQEPMVLRLRAPIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGD 80 (311)
T ss_pred ChHHhcCcccccCccccccCCCHHHHHHHHHHHHHHHHhCCCeEeeCCCEEEEEeccCCHHHHHHHHHHcCCCcccccCC
Confidence 3566776655 22456779999999999999999999999999999999999999999999999999998754
Q ss_pred ---CcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhhCChHHHHHHHhH------HHHHHHHHH
Q psy17085 84 ---SRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRYNV------KLWKTFTEC 154 (826)
Q Consensus 84 ---~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~gf~~e~~~~~~~------~~~~~~~~~ 154 (826)
.+|||||||||||++|+||+.+|+++++.+|.++++||||||.+.++..|||..++..+|+. .+|..+.++
T Consensus 81 ~~~~~~vfLGDyVDRGp~s~evl~ll~~lk~~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~~~~~~~~~~~l~~~~~~~ 160 (311)
T cd07419 81 IEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGDSVWRRINRL 160 (311)
T ss_pred CcCceEEEECCccCCCCChHHHHHHHHHhhhcCCCcEEEeccccchHHHHHHhcccHHHHHhcCccchhhHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999998854 689999999
Q ss_pred HhcCCcEEEECCcEEEEeCCCCCCcCCHHHHhhccCCC-CCCCCCcccccccCCcccc--hhchhccc---ceee--EEE
Q psy17085 155 FNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIRRISRPT-RVPEQGLLCDLLWSDPEKA--AESQLTIV---RQVR--FHA 226 (826)
Q Consensus 155 f~~LPl~~~i~~~il~vHgGi~~~~~~l~~i~~i~r~~-~~~~~~~~~dllWsdP~~~--~~~~~~~~---RG~g--~~l 226 (826)
|+.||++++++++++|||||++|.+.++++|+.+.||. ..+..++++|++||||.+. ..+|.+++ ||.| +.
T Consensus 161 f~~LPl~avi~~~~l~vHgGi~p~~~~l~~i~~i~r~~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~rg~g~~~~- 239 (311)
T cd07419 161 FEWLPLAAIIEDKILCMHGGIGRSINHVSEIEDLKRPLTMEFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRGPGLIVK- 239 (311)
T ss_pred HHhCchhheecccEEEEccCCCCCCCcHHHHhhcCCCCCCCCCCcceeeeeccCccccccccccccCCCCCCCCCccee-
Confidence 99999999999999999999999999999999999997 4456788999999999865 35777776 9999 56
Q ss_pred EEEEcceecccccccc--------------------cccccccccCCcCCccccCCceEEEEeCcccc
Q psy17085 227 EVKLGAHYLSSQLNNA--------------------VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQ 274 (826)
Q Consensus 227 ~V~~G~~~~~~~~~~~--------------------~~~V~~ii~HP~Y~~~~~~nDIALLkL~~pv~ 274 (826)
||...+..+.... .-.+..++.-|+|. ....|.-|++.+.+...
T Consensus 240 ---fg~~~~~~Fl~~n~l~~iiRgHe~~~~G~~~~~~~~~iTvfSa~~y~-~~~~n~~ai~~i~~~~~ 303 (311)
T cd07419 240 ---FGPDRVHRFLEENDLQMIIRAHECVMDGFERFAQGKLITLFSATNYC-GTAGNAGAILVLGRDLT 303 (311)
T ss_pred ---ECHHHHHHHHHHCCCeEEEEechhhhCCeEEeCCCeEEEEecCCccc-CCCCceEEEEEECCCCc
Confidence 9987776554311 12234455556663 23455666666665443
No 16
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=100.00 E-value=1.7e-41 Score=370.27 Aligned_cols=231 Identities=29% Similarity=0.525 Sum_probs=202.0
Q ss_pred CccCHHHHHHHHHcccc---CCCCcccCCHHHHHHHHHHHHHHHhcCCCceeeC----CCeeEEecCCCCHHHHHHHHHh
Q psy17085 5 DSLNLDSIINRLIDIDA---RSGRNVNLHESEISALCRVSREIFLSEPMLLELG----TPLKICGDIHGQYLDLLMLFDY 77 (826)
Q Consensus 5 ~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~----~~i~viGDIHG~~~~L~~~l~~ 77 (826)
....++.+++.+.+... .+.....++.+++..||++|.++|++||++++++ .+++|||||||++.+|.++|+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~a~~il~~ep~ll~i~~~~~~~i~VvGDIHG~~~dL~~ll~~ 87 (377)
T cd07418 8 TNEWVHELMSVFEWSSRNLPPSELPSVLPVNVFDSLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLED 87 (377)
T ss_pred CHHHHHHHHHHHHhcccccCchhhccCCCHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCEEEEEecCCCHHHHHHHHHH
Confidence 44568888888866532 2333456899999999999999999999999998 7999999999999999999999
Q ss_pred CCCCCC-CcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhhCChHHHHHHHh---HHHHHHHHH
Q psy17085 78 GKYPPK-SRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRYN---VKLWKTFTE 153 (826)
Q Consensus 78 ~g~~~~-~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~gf~~e~~~~~~---~~~~~~~~~ 153 (826)
.|+++. ++|||||||||||++|+||+.+|+++|+.+|++|++||||||...++..|||.+|+..+|+ ..+|+.+.+
T Consensus 88 ~g~~~~~~~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i~~~~Gf~~E~~~~y~~~~~~l~~~~~~ 167 (377)
T cd07418 88 AGFPDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDKGKHVYRKCLG 167 (377)
T ss_pred hCCCCCCceEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccchhhcccchhhhhhcCchHHHHHHHHHH
Confidence 999865 4699999999999999999999999999999999999999999999999999999999995 479999999
Q ss_pred HHhcCCcEEEECCcEEEEeCCCC---------------------------CCcCCHHHHhhccCCC-CCCCCC---cccc
Q psy17085 154 CFNCMPVAAIVDEKIFCCHGGLS---------------------------PYLSSIDQIRRISRPT-RVPEQG---LLCD 202 (826)
Q Consensus 154 ~f~~LPl~~~i~~~il~vHgGi~---------------------------~~~~~l~~i~~i~r~~-~~~~~~---~~~d 202 (826)
+|++||++++++++++||||||+ +.+.++++|+.++|+. +++..+ +++|
T Consensus 168 ~f~~LPlaavI~~~i~cvHGGI~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~sl~~i~~i~r~~~~~~~~~~~~i~~d 247 (377)
T cd07418 168 CFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKLGTLDDLMKARRSVLDPPGEGSNLIPGD 247 (377)
T ss_pred HHHhCCcEEEECCCEEEECCCcCCcccccccccccccccccccccccccCCCCCCHHHHhhCCCCCCCCCCCCcccccee
Confidence 99999999999999999999993 4567999999999974 555544 4789
Q ss_pred cccCCcccchhchhcc-cceeeEEEEEEEcceecccccc
Q psy17085 203 LLWSDPEKAAESQLTI-VRQVRFHAEVKLGAHYLSSQLN 240 (826)
Q Consensus 203 llWsdP~~~~~~~~~~-~RG~g~~l~V~~G~~~~~~~~~ 240 (826)
||||||++. .+|.+| +||.|+. ||...+..+..
T Consensus 248 lLWSDP~~~-~g~~~~~~RG~g~~----FG~~~~~~FL~ 281 (377)
T cd07418 248 VLWSDPSLT-PGLSPNKQRGIGLL----WGPDCTEEFLE 281 (377)
T ss_pred eEeeCCccC-CCCCccCCCCCccc----cCHHHHHHHHH
Confidence 999999975 566665 7999999 99988776653
No 17
>KOG0377|consensus
Probab=99.98 E-value=1.2e-32 Score=291.39 Aligned_cols=209 Identities=30% Similarity=0.586 Sum_probs=183.9
Q ss_pred cccCCHHHHHHHHHHHHHHHhcCCCceeeC----CCeeEEecCCCCHHHHHHHHHhCCCCCCC-cccccCcccCCCCCcH
Q psy17085 26 NVNLHESEISALCRVSREIFLSEPMLLELG----TPLKICGDIHGQYLDLLMLFDYGKYPPKS-RYLFLGDYVDRGSNSL 100 (826)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~----~~i~viGDIHG~~~~L~~~l~~~g~~~~~-~~vflGD~VDrG~~s~ 100 (826)
+.++.+..+..++.+++++|++.|++-.++ ..|.|+||+||.++||.-+|-+.|+|..+ .|||.||+||||.+|+
T Consensus 131 kq~LH~kYVl~iL~EakK~lkqmPnis~isTs~S~qVTiCGDLHGklDDL~~I~yKNGlPS~~npYvFNGDFVDRGk~si 210 (631)
T KOG0377|consen 131 KQRLHPKYVLLILREAKKSLKQMPNISRISTSVSQQVTICGDLHGKLDDLLVILYKNGLPSSSNPYVFNGDFVDRGKRSI 210 (631)
T ss_pred hhhccHHHHHHHHHHHHHHHHhCCCCCccccccccceEEeccccccccceEEEEecCCCCCCCCCeeecCchhhccccch
Confidence 346999999999999999999999998874 46999999999999999999999999765 4999999999999999
Q ss_pred HHHHHHHHhhhccCCcEEEECCCChhhhhHhhhCChHHHHHHH---hHHHHHHHHHHHhcCCcEEEECCcEEEEeCCCCC
Q psy17085 101 ETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRY---NVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSP 177 (826)
Q Consensus 101 evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~gf~~e~~~~~---~~~~~~~~~~~f~~LPl~~~i~~~il~vHgGi~~ 177 (826)
|++..|+++.+.||+.+++.|||||+.++|..|||..|+..+| +.++.+-+.++|+.||++.+|+++++++|||++.
T Consensus 211 EvLmiL~a~~lv~P~~~~LNRGNHED~mmNlRYGF~kEv~~KYk~~~k~Ilr~leevy~WLPi~tiid~~ilvvHGGiSd 290 (631)
T KOG0377|consen 211 EVLMILFALYLVYPNAVHLNRGNHEDHMMNLRYGFIKEVESKYKRHGKRILRFLEEVYRWLPIGTIIDSRILVVHGGISD 290 (631)
T ss_pred hhHHHHHHHHhcCchhhhccCCchHHHHHHHHHhHHHHHHHHhhhcccHHHHHHHHHHHhcchhhhcccceEEEecCccc
Confidence 9999999999999999999999999999999999999999999 6789999999999999999999999999999985
Q ss_pred CcCCHHHHhhccCCC---------CCC-------------CCCcccccccCCcccchhchhcccceeeEEEEEEEcceec
Q psy17085 178 YLSSIDQIRRISRPT---------RVP-------------EQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYL 235 (826)
Q Consensus 178 ~~~~l~~i~~i~r~~---------~~~-------------~~~~~~dllWsdP~~~~~~~~~~~RG~g~~l~V~~G~~~~ 235 (826)
.++++-+.+|+|.. +.. +-+.+.||+||||.....+|.+--||.|++ ||.+..
T Consensus 291 -~Tdl~ll~kIeR~k~~Svlrpp~ek~~d~e~~s~~vg~dEW~Qi~DImWSDP~~~~GC~pNt~RGgG~y----FGpDvT 365 (631)
T KOG0377|consen 291 -STDLDLLDKIERGKYVSVLRPPTEKGRDGEKLSKAVGVDEWQQIFDIMWSDPQATMGCVPNTLRGGGCY----FGPDVT 365 (631)
T ss_pred -chhHHHHhhhhccceeEEecCCcccCccCCchhhhcChHHHHHHHHHHhcCcccccCCCcccccCCcce----eCchHH
Confidence 46777777776631 111 013568999999998866777667999999 999877
Q ss_pred cccc
Q psy17085 236 SSQL 239 (826)
Q Consensus 236 ~~~~ 239 (826)
..+.
T Consensus 366 ~~~L 369 (631)
T KOG0377|consen 366 DNFL 369 (631)
T ss_pred HHHH
Confidence 6554
No 18
>PF11911 DUF3429: Protein of unknown function (DUF3429); InterPro: IPR021836 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 147 to 245 amino acids in length.
Probab=99.97 E-value=3.1e-31 Score=255.13 Aligned_cols=137 Identities=26% Similarity=0.470 Sum_probs=124.5
Q ss_pred CCCchhHHHHhhccchhhhHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhHhhhHHHHhhhcccCCCccccccchhhHH
Q psy17085 684 NQVPNHIMLLAVAGLVPFLVPCVDVLLISGYTPTMELIQTTYSSLLLTTLGGIHLTSHFRAILHNQVNKEDIPTILYPCT 763 (826)
Q Consensus 684 ~~~p~~~~~Lg~aGliPF~~~~~~~~~~~~~~~~~~~~~~~Y~a~IlSFLgGv~WG~a~~~~~~~~~~~~~l~~sv~p~l 763 (826)
+++|+++++||+||||||+++++..+..+........+|++|||+|||||||+|||+++++. +++.++.++++||+|+|
T Consensus 1 ~~~p~~~~~LG~aGLiPF~~~~~~~~~~~~~~~~~~~~~~~Y~AvILSFLgGv~WG~al~~~-~~~~~~~~l~~sv~p~L 79 (142)
T PF11911_consen 1 MKIPRPAWLLGYAGLIPFVALALLAWFGPEYSPAALYAFLAYGAVILSFLGGVHWGLALSQP-SASPSWRRLIWSVVPSL 79 (142)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHHH
Confidence 46899999999999999999888888877777778999999999999999999999999743 45677899999999999
Q ss_pred HHHHHHhh-h-HHHHHHHHHHHHHHHHHHhhhcc--cCChhHHHHHHHHHHHHHHHHHHHHH
Q psy17085 764 FAWISLLA-P-SVGLVVNSTGLVLLLLADIQKNQ--ARPSWYKSLRLMTTSTAVVTMVVMVA 821 (826)
Q Consensus 764 ~aw~~ll~-~-~~~l~~l~~gf~~~~~~d~~~~~--~~p~wy~~lR~~lT~~v~~~l~~~~~ 821 (826)
+||+++++ + ..+++++++||++++++|++..+ ..|.||++||.+||++|++||+++++
T Consensus 80 ~aW~all~~~~~~~l~~l~~gf~~~~~~D~~~~~~~~~p~wy~~LR~~LT~vv~~~l~~~~~ 141 (142)
T PF11911_consen 80 VAWAALLLGPPPWALLLLAAGFLALLLVDRRLWRRGLYPSWYLRLRFRLTAVVVLSLLLALL 141 (142)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997 5 45999999999999999999987 68999999999999999999999875
No 19
>KOG0376|consensus
Probab=99.94 E-value=1.4e-27 Score=260.59 Aligned_cols=208 Identities=39% Similarity=0.757 Sum_probs=191.8
Q ss_pred ccCCHHHHHHHHHHHHHHHhcCCCceeeCC----CeeEEecCCCCHHHHHHHHHhCCCCCCC-cccccCcccCCCCCcHH
Q psy17085 27 VNLHESEISALCRVSREIFLSEPMLLELGT----PLKICGDIHGQYLDLLMLFDYGKYPPKS-RYLFLGDYVDRGSNSLE 101 (826)
Q Consensus 27 ~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~----~i~viGDIHG~~~~L~~~l~~~g~~~~~-~~vflGD~VDrG~~s~e 101 (826)
..+....+-.|+..+.+++..+|++++++. .+.|+||+||++.+++++|+..|.|+.. .|+|.||++|||..|.|
T Consensus 181 ~~L~~k~a~~i~~~~~~~~~~l~~~ve~~~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~~ylfngdfv~rgs~s~e 260 (476)
T KOG0376|consen 181 KKLPKKYAYSILDLAKTILRKLPSLVEISVPGDVKISVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDFVDRGSWSVE 260 (476)
T ss_pred cccccccceeeHHHHhhHHhcCCcceEeecCCCceEEecCCccccccchhhhHhhcCCCCCcccccccCceeeeccccee
Confidence 346666777899999999999999998854 4899999999999999999999998764 59999999999999999
Q ss_pred HHHHHHHhhhccCCcEEEECCCChhhhhHhhhCChHHHHHHHhHHHHHHHHHHHhcCCcEEEECCcEEEEeCCCC-CCcC
Q psy17085 102 TICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLS-PYLS 180 (826)
Q Consensus 102 vl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~f~~LPl~~~i~~~il~vHgGi~-~~~~ 180 (826)
++..+...|+.+|+++|++|||||...++..|||.+++..+|..+.+..+.+.|..||++..|+++++.+|||+. +.-.
T Consensus 261 ~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte~~~~~f~~~f~~LPl~~~i~~~~~~~hgglf~~~~v 340 (476)
T KOG0376|consen 261 VILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTEEMFNLFSEVFIWLPLAHLINNKVLVMHGGLFSPDGV 340 (476)
T ss_pred eeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhhHHHHHHhhhhhhccccchhhhcCceEEEecCcCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999985 4556
Q ss_pred CHHHHhhccCCCCCCCCCcccccccCCcccchhchhcccceeeEEEEEEEcceeccccc
Q psy17085 181 SIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYLSSQL 239 (826)
Q Consensus 181 ~l~~i~~i~r~~~~~~~~~~~dllWsdP~~~~~~~~~~~RG~g~~l~V~~G~~~~~~~~ 239 (826)
++++|++|.|+.++++.+.+|++|||||... .|..+|.||.|.. ||.+....+.
T Consensus 341 ~l~d~r~i~r~~~~~~~~~~~~~lws~pq~~-~g~s~S~r~~g~~----fG~d~t~~f~ 394 (476)
T KOG0376|consen 341 TLEDFRNIDRFEQPPEEGLMCELLWSDPQPA-NGRSPSKRGVGLQ----FGPDVTERFL 394 (476)
T ss_pred cHHHHHhhhhccCCcccccccccccCCCccc-cCCCccccCceee----eCCCchhhHH
Confidence 9999999999988899999999999999865 7999999999999 9998876553
No 20
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=99.88 E-value=2.5e-22 Score=209.60 Aligned_cols=147 Identities=49% Similarity=0.856 Sum_probs=124.2
Q ss_pred eEEecCCCCHHHHHHHHHhCCCCCCCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhhCChHH
Q psy17085 59 KICGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDE 138 (826)
Q Consensus 59 ~viGDIHG~~~~L~~~l~~~g~~~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~gf~~e 138 (826)
+|||||||++.+|.++++..+..+.+.+||+|||||||+++.+++.++..++.. |.++++|+||||.+.++...++..+
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~~~d~li~lGD~vdrg~~~~~~l~~l~~~~~~-~~~~~~l~GNHe~~~~~~~~~~~~~ 79 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLRGNHEDMLLNFLYGFYDE 79 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCCCCCEEEEECCEeCCCCCcHHHHHHHHHhcCC-CCcEEEEccCchhhhhhhhcCCcch
Confidence 589999999999999999999988899999999999999999999999999877 8899999999999998877665543
Q ss_pred H---------HHHHhHHHHHHHHHHHhcCCcEEEECC-cEEEEeCCCCCCcCCHHHHhhccCCCCCCCCCcccccccCCc
Q psy17085 139 C---------KRRYNVKLWKTFTECFNCMPVAAIVDE-KIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDP 208 (826)
Q Consensus 139 ~---------~~~~~~~~~~~~~~~f~~LPl~~~i~~-~il~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~dllWsdP 208 (826)
. .......++..+.++|..||+++.++. +++|||||++|.....+++. ..+..+...+++|+||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~~~~~~~~~~~~------~~~~~~~~~~~lw~r~ 153 (225)
T cd00144 80 DEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGLSPGLPLEEQIK------EEPEDQLPEDLLWSDP 153 (225)
T ss_pred hhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCCCCccchHHhhh------cCcccccceeeeecCC
Confidence 2 222356678889999999999999976 99999999999876555554 2334567789999999
Q ss_pred ccch
Q psy17085 209 EKAA 212 (826)
Q Consensus 209 ~~~~ 212 (826)
....
T Consensus 154 ~~~~ 157 (225)
T cd00144 154 LELP 157 (225)
T ss_pred CCCC
Confidence 8543
No 21
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=99.86 E-value=1.4e-21 Score=206.37 Aligned_cols=121 Identities=24% Similarity=0.378 Sum_probs=99.1
Q ss_pred CCeeEEecCCCCHHHHHHHHHhCCCC---------CCCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChh
Q psy17085 56 TPLKICGDIHGQYLDLLMLFDYGKYP---------PKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHEC 126 (826)
Q Consensus 56 ~~i~viGDIHG~~~~L~~~l~~~g~~---------~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~ 126 (826)
|+++||||||||++.|.++|+++++. ..+++||||||||||++|.||+++++.+. .+.++++||||||.
T Consensus 1 ~~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~--~~~~~~~l~GNHE~ 78 (245)
T PRK13625 1 MKYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELV--EKKAAYYVPGNHCN 78 (245)
T ss_pred CceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHh--hCCCEEEEeCccHH
Confidence 57999999999999999999998874 46789999999999999999999999885 44689999999999
Q ss_pred hhhHhhhCC-------hHHHHHHH-------hHHHHHHHHHHHhcCCcEEEEC-CcEEEEeCCCCCC
Q psy17085 127 ANINKVYGF-------YDECKRRY-------NVKLWKTFTECFNCMPVAAIVD-EKIFCCHGGLSPY 178 (826)
Q Consensus 127 ~~~~~~~gf-------~~e~~~~~-------~~~~~~~~~~~f~~LPl~~~i~-~~il~vHgGi~~~ 178 (826)
++++...+- ..+....| ...+.+.+.++|+++|++..++ ++++|||||++|.
T Consensus 79 ~~l~~~~~~~~~~~~gg~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~~~~ 145 (245)
T PRK13625 79 KLYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGIRQD 145 (245)
T ss_pred HHHHHHhCCCccccchhHhHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCCChH
Confidence 988765431 11222223 2346788999999999998774 5799999999885
No 22
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=99.85 E-value=1.1e-21 Score=206.63 Aligned_cols=121 Identities=21% Similarity=0.354 Sum_probs=103.5
Q ss_pred CCeeEEecCCCCHHHHHHHHHhCCCC-CCCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhhC
Q psy17085 56 TPLKICGDIHGQYLDLLMLFDYGKYP-PKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYG 134 (826)
Q Consensus 56 ~~i~viGDIHG~~~~L~~~l~~~g~~-~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~g 134 (826)
|.++||||||||+++|.++|+++++. ..+.++|+||+|||||+|+||++++.++. +++++|+||||.+.+...+|
T Consensus 1 m~~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~slevL~~l~~l~----~~~~~VlGNHD~~lL~~~~g 76 (279)
T TIGR00668 1 MATYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLEVLRYVKSLG----DAVRLVLGNHDLHLLAVFAG 76 (279)
T ss_pred CcEEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC----CCeEEEEChhHHHHHHHhcC
Confidence 57899999999999999999999976 46889999999999999999999999875 46889999999999988877
Q ss_pred Ch-----HHHHHHHhHHHHHHHHHHHhcCCcEEEEC-CcEEEEeCCCCCCcC
Q psy17085 135 FY-----DECKRRYNVKLWKTFTECFNCMPVAAIVD-EKIFCCHGGLSPYLS 180 (826)
Q Consensus 135 f~-----~e~~~~~~~~~~~~~~~~f~~LPl~~~i~-~~il~vHgGi~~~~~ 180 (826)
+. +.....+.....+++.+|++.+|+....+ .++++||||++|.+.
T Consensus 77 ~~~~~~~d~l~~~l~a~~~~ell~wLr~lPl~i~~~~~~~~lVHAGi~P~w~ 128 (279)
T TIGR00668 77 ISRNKPKDRLDPLLEAPDADELLNWLRRQPLLQHDEEKKLVMAHAGITPQWD 128 (279)
T ss_pred CCccCchHHHHHHHHccCHHHHHHHHHcCCcEEEeCCCCEEEEecCCCCCCc
Confidence 62 33333345566788999999999997664 369999999999875
No 23
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=99.85 E-value=3.5e-21 Score=203.02 Aligned_cols=156 Identities=23% Similarity=0.348 Sum_probs=116.0
Q ss_pred eeEEecCCCCHHHHHHHHHhCCCC-CCCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhhCCh
Q psy17085 58 LKICGDIHGQYLDLLMLFDYGKYP-PKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFY 136 (826)
Q Consensus 58 i~viGDIHG~~~~L~~~l~~~g~~-~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~gf~ 136 (826)
++||||||||+++|+++|+++++. ..|.+||+||||||||+|.||++++.+++ .++++|+||||.+.+...+|+.
T Consensus 1 ~yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~evl~~l~~l~----~~v~~VlGNHD~~ll~~~~g~~ 76 (257)
T cd07422 1 TYAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTVLGNHDLHLLAVAAGIK 76 (257)
T ss_pred CEEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHHHHHHHHHhcC----CCeEEEcCCchHHHHHHhcCcc
Confidence 589999999999999999999986 57899999999999999999999999987 4799999999999988766643
Q ss_pred H-----HHHHHHhHHHHHHHHHHHhcCCcEEEECC-cEEEEeCCCCCCcCCHHHHh----hccCCCCCCC-CCccccccc
Q psy17085 137 D-----ECKRRYNVKLWKTFTECFNCMPVAAIVDE-KIFCCHGGLSPYLSSIDQIR----RISRPTRVPE-QGLLCDLLW 205 (826)
Q Consensus 137 ~-----e~~~~~~~~~~~~~~~~f~~LPl~~~i~~-~il~vHgGi~~~~~~l~~i~----~i~r~~~~~~-~~~~~dllW 205 (826)
. .....+.....+++.+|++++|++..+++ ++++||||++|.+. +++.. +++..+..++ ...+..+-|
T Consensus 77 ~~~~~~t~~~~l~~~~~~~~~~wLr~lPl~~~~~~~~~l~vHAGi~p~w~-~~~~~~~a~eve~~l~~~~~~~~~~~my~ 155 (257)
T cd07422 77 KPKKKDTLDDILNAPDRDELLDWLRHQPLLHRDPELGILMVHAGIPPQWS-IEQALKLAREVEAALRGPNYREFLKNMYG 155 (257)
T ss_pred ccccHhHHHHHHhccchHHHHHHHHhCCCEEEECCccEEEEccCCCCCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHhhC
Confidence 1 12222233345778999999999998865 89999999999874 23222 2222222222 235556666
Q ss_pred CCcccchhchhccccee
Q psy17085 206 SDPEKAAESQLTIVRQV 222 (826)
Q Consensus 206 sdP~~~~~~~~~~~RG~ 222 (826)
+.|+ .|.++..|.
T Consensus 156 ~~p~----~W~~~l~g~ 168 (257)
T cd07422 156 NEPD----RWSDDLTGI 168 (257)
T ss_pred CCCc----ccCcccCcc
Confidence 6664 466665444
No 24
>KOG3627|consensus
Probab=99.84 E-value=3.4e-20 Score=197.19 Aligned_cols=182 Identities=20% Similarity=0.253 Sum_probs=138.4
Q ss_pred EEEEEcceecccc-c-c--cccccccccccCCcCCccccC-CceEEEEeCcccccCcceeeeecCCCcccccCCCCCEEE
Q psy17085 226 AEVKLGAHYLSSQ-L-N--NAVYPVEKTFLHEKYDKAEIK-SDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIAT 300 (826)
Q Consensus 226 l~V~~G~~~~~~~-~-~--~~~~~V~~ii~HP~Y~~~~~~-nDIALLkL~~pv~~~~~V~PIcLp~~~~~~~~~~g~~c~ 300 (826)
+.|++|....... . . .+...|.+++.||+|+..... ||||||+|.+++.|+++|+|||||..........+..|.
T Consensus 65 ~~V~~G~~~~~~~~~~~~~~~~~~v~~~i~H~~y~~~~~~~nDiall~l~~~v~~~~~i~piclp~~~~~~~~~~~~~~~ 144 (256)
T KOG3627|consen 65 YTVRLGEHDINLSVSEGEEQLVGDVEKIIVHPNYNPRTLENNDIALLRLSEPVTFSSHIQPICLPSSADPYFPPGGTTCL 144 (256)
T ss_pred eEEEECccccccccccCchhhhceeeEEEECCCCCCCCCCCCCEEEEEECCCcccCCcccccCCCCCcccCCCCCCCEEE
Confidence 3456776654322 1 1 134557788899999988877 999999999999999999999998654211233458999
Q ss_pred EEecCcccCC-CCCCcCceEEEEeccChhhhhccccccccccccccccccccccCC---CCCCCCCCCCCeeEEeECCeE
Q psy17085 301 VAGWGYYTYT-TAISNAKNTLKFPGMSLQILQWFVDSYHSIHLENYATEAAISNAN---NTLKFPGMSLQILQWFVDSYK 376 (826)
Q Consensus 301 vsGWG~t~~~-~~~s~~Lq~v~v~vis~~~C~~~~~~~~~~~i~~~~~~~~~~~~~---~~~g~~Gdsggpl~~~~~~~~ 376 (826)
++|||.+... ...+..|+++.+++++..+|+..+.... .+. ..+.|... ....|.||+|+|+.+.....+
T Consensus 145 v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~~~--~~~----~~~~Ca~~~~~~~~~C~GDSGGPLv~~~~~~~ 218 (256)
T KOG3627|consen 145 VSGWGRTESGGGPLPDTLQEVDVPIISNSECRRAYGGLG--TIT----DTMLCAGGPEGGKDACQGDSGGPLVCEDNGRW 218 (256)
T ss_pred EEeCCCcCCCCCCCCceeEEEEEeEcChhHhcccccCcc--ccC----CCEEeeCccCCCCccccCCCCCeEEEeeCCcE
Confidence 9999986543 3568899999999999999986544321 111 11244432 334599999999999888889
Q ss_pred EEEEEEEecCCCCCCCCCCeEEEECcccHHHHHHHhc
Q psy17085 377 LNSSLGAVAPTPKPQSGLFVYGVKFLQWLYWFHPKLK 413 (826)
Q Consensus 377 ~l~GIvS~g~~~c~~~~~P~VyTrVs~Y~dWI~~~ik 413 (826)
.+.||+|||...|+..+.|++||+|+.|.+||++.+.
T Consensus 219 ~~~GivS~G~~~C~~~~~P~vyt~V~~y~~WI~~~~~ 255 (256)
T KOG3627|consen 219 VLVGIVSWGSGGCGQPNYPGVYTRVSSYLDWIKENIG 255 (256)
T ss_pred EEEEEEEecCCCCCCCCCCeEEeEhHHhHHHHHHHhc
Confidence 9999999995559888899999999999999998864
No 25
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=99.83 E-value=2.5e-20 Score=198.64 Aligned_cols=158 Identities=18% Similarity=0.293 Sum_probs=116.2
Q ss_pred CCeeEEecCCCCHHHHHHHHHhCCCC-CCCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhhC
Q psy17085 56 TPLKICGDIHGQYLDLLMLFDYGKYP-PKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYG 134 (826)
Q Consensus 56 ~~i~viGDIHG~~~~L~~~l~~~g~~-~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~g 134 (826)
|+++||||||||+++|.+++++.++. ..+.+||+||+|||||+|.||++++..+. .++++|+||||.+.+...+|
T Consensus 1 M~~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~~vl~~l~~l~----~~~~~VlGNHD~~ll~~~~g 76 (275)
T PRK00166 1 MATYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLEVLRFVKSLG----DSAVTVLGNHDLHLLAVAAG 76 (275)
T ss_pred CcEEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHHHHHHHHHhcC----CCeEEEecChhHHHHHhhcC
Confidence 67999999999999999999999874 56889999999999999999999999873 46999999999998887776
Q ss_pred ChH-----HHHHHHhHHHHHHHHHHHhcCCcEEEE-CCcEEEEeCCCCCCcCCHHHH---hhccCCCCCCC-CCcccccc
Q psy17085 135 FYD-----ECKRRYNVKLWKTFTECFNCMPVAAIV-DEKIFCCHGGLSPYLSSIDQI---RRISRPTRVPE-QGLLCDLL 204 (826)
Q Consensus 135 f~~-----e~~~~~~~~~~~~~~~~f~~LPl~~~i-~~~il~vHgGi~~~~~~l~~i---~~i~r~~~~~~-~~~~~dll 204 (826)
+.. ...........+.+.+|++++|+...+ ++++++||||++|.+...+.+ ++++..+..++ ...+..+-
T Consensus 77 ~~~~~~~~~l~~~l~~~~~~~~~~~L~~lPl~~~~~~~~~l~vHAGi~p~~~~~~~~~~a~eve~~l~~~~~~~~~~~my 156 (275)
T PRK00166 77 IKRNKKKDTLDPILEAPDRDELLDWLRHQPLLHVDEELGLVMVHAGIPPQWDLATALALAREVEAVLRSDDYRDFLANMY 156 (275)
T ss_pred CccccchhHHHHHHccccHHHHHHHHHCCCcEEEECCCCEEEEccCCCCCCCHHHHHHHHHHHHHHhcCCcHHHHHHHhc
Confidence 531 122212333456788999999999886 568999999999987432211 22222232222 23556666
Q ss_pred cCCcccchhchhcccce
Q psy17085 205 WSDPEKAAESQLTIVRQ 221 (826)
Q Consensus 205 WsdP~~~~~~~~~~~RG 221 (826)
|+.|+ .|.++..|
T Consensus 157 ~~~p~----~W~~~l~~ 169 (275)
T PRK00166 157 GNEPD----RWSPDLTG 169 (275)
T ss_pred CCCcC----ccCcccCc
Confidence 76674 46655443
No 26
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.82 E-value=5.9e-20 Score=193.00 Aligned_cols=120 Identities=28% Similarity=0.482 Sum_probs=98.6
Q ss_pred CCeeEEecCCCCHHHHHHHHHhCCCCC----------CCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCCh
Q psy17085 56 TPLKICGDIHGQYLDLLMLFDYGKYPP----------KSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHE 125 (826)
Q Consensus 56 ~~i~viGDIHG~~~~L~~~l~~~g~~~----------~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE 125 (826)
||+.||||||||+.+|+++|+++++.+ .+++||||||||||++|.||+++|.+++.. .++++||||||
T Consensus 1 ~~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~--~~~~~v~GNHE 78 (234)
T cd07423 1 GPFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAA--GAALCVPGNHD 78 (234)
T ss_pred CCeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhC--CcEEEEECCcH
Confidence 689999999999999999999998753 468999999999999999999999998643 46899999999
Q ss_pred hhhhHhhhC--------ChHHHHHHH---hHHHHHHHHHHHhcCCcEEEEC-CcEEEEeCCCCCC
Q psy17085 126 CANINKVYG--------FYDECKRRY---NVKLWKTFTECFNCMPVAAIVD-EKIFCCHGGLSPY 178 (826)
Q Consensus 126 ~~~~~~~~g--------f~~e~~~~~---~~~~~~~~~~~f~~LPl~~~i~-~~il~vHgGi~~~ 178 (826)
.++++...+ +. +....+ ...+.+.+.++|+.||++..++ ++++|+|||+++.
T Consensus 79 ~~l~~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHag~~~~ 142 (234)
T cd07423 79 NKLYRKLQGRNVKITHGLE-ETVAQLEAESEEFKEEVIEFYESLPSHLVLDEGKLVVAHAGIKEE 142 (234)
T ss_pred HHHHHHhcCCCccccCccc-chHHHHhhccHHHHHHHHHHHHhCCcEEEeCCCcEEEEeCCCChH
Confidence 998875433 22 222333 2456788899999999998875 4799999998864
No 27
>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.
Probab=99.81 E-value=3.7e-19 Score=184.68 Aligned_cols=174 Identities=23% Similarity=0.280 Sum_probs=137.5
Q ss_pred EEEcceecccc-cccccccccccccCCcCCccccCCceEEEEeCcccccCcceeeeecCCCcccccCCCCCEEEEEecCc
Q psy17085 228 VKLGAHYLSSQ-LNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWGY 306 (826)
Q Consensus 228 V~~G~~~~~~~-~~~~~~~V~~ii~HP~Y~~~~~~nDIALLkL~~pv~~~~~V~PIcLp~~~~~~~~~~g~~c~vsGWG~ 306 (826)
|++|....... ...+.+.|.+++.||+|+.....+|||||+|.+++.++.+++|||||... .....+..+.++|||.
T Consensus 54 v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAll~L~~~~~~~~~v~picl~~~~--~~~~~~~~~~~~G~g~ 131 (232)
T cd00190 54 VRLGSHDLSSNEGGGQVIKVKKVIVHPNYNPSTYDNDIALLKLKRPVTLSDNVRPICLPSSG--YNLPAGTTCTVSGWGR 131 (232)
T ss_pred EEeCcccccCCCCceEEEEEEEEEECCCCCCCCCcCCEEEEEECCcccCCCcccceECCCcc--ccCCCCCEEEEEeCCc
Confidence 44777665432 23456889999999999988889999999999999999999999999874 2355678999999998
Q ss_pred ccCCCCCCcCceEEEEeccChhhhhccccccccccccccccccccccCC---CCCCCCCCCCCeeEEeECCeEEEEEEEE
Q psy17085 307 YTYTTAISNAKNTLKFPGMSLQILQWFVDSYHSIHLENYATEAAISNAN---NTLKFPGMSLQILQWFVDSYKLNSSLGA 383 (826)
Q Consensus 307 t~~~~~~s~~Lq~v~v~vis~~~C~~~~~~~~~~~i~~~~~~~~~~~~~---~~~g~~Gdsggpl~~~~~~~~~l~GIvS 383 (826)
.......+..++...+.+++.+.|+..+... ........|... ....|.||+|+|+....++.+++.||+|
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~------~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~lvGI~s 205 (232)
T cd00190 132 TSEGGPLPDVLQEVNVPIVSNAECKRAYSYG------GTITDNMLCAGGLEGGKDACQGDSGGPLVCNDNGRGVLVGIVS 205 (232)
T ss_pred CCCCCCCCceeeEEEeeeECHHHhhhhccCc------ccCCCceEeeCCCCCCCccccCCCCCcEEEEeCCEEEEEEEEe
Confidence 6655456788999999999999998554320 011122223221 3457999999999999999999999999
Q ss_pred ecCCCCCCCCCCeEEEECcccHHHHHH
Q psy17085 384 VAPTPKPQSGLFVYGVKFLQWLYWFHP 410 (826)
Q Consensus 384 ~g~~~c~~~~~P~VyTrVs~Y~dWI~~ 410 (826)
+|. .|...+.|.+||+|+.|.+||.+
T Consensus 206 ~g~-~c~~~~~~~~~t~v~~~~~WI~~ 231 (232)
T cd00190 206 WGS-GCARPNYPGVYTRVSSYLDWIQK 231 (232)
T ss_pred hhh-ccCCCCCCCEEEEcHHhhHHhhc
Confidence 995 58776889999999999999975
No 28
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=99.80 E-value=2.4e-19 Score=186.59 Aligned_cols=115 Identities=24% Similarity=0.356 Sum_probs=93.0
Q ss_pred eEEecCCCCHHHHHHHHHhCCCC--------CCCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhH
Q psy17085 59 KICGDIHGQYLDLLMLFDYGKYP--------PKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANIN 130 (826)
Q Consensus 59 ~viGDIHG~~~~L~~~l~~~g~~--------~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~ 130 (826)
+||||||||++.|.++|+++++. +.+++|||||||||||+|.||+++++++... .++++|+||||.+++.
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~~--~~~~~l~GNHE~~ll~ 79 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVDA--GHALAVMGNHEFNAIA 79 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhcC--CCEEEEEccCcHHHHH
Confidence 68999999999999999998875 4678999999999999999999999998643 5799999999999886
Q ss_pred hhhCC------------h-----HHHHHHH--hHHHHHHHHHHHhcCCcEEEECCcEEEEeCCCC
Q psy17085 131 KVYGF------------Y-----DECKRRY--NVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLS 176 (826)
Q Consensus 131 ~~~gf------------~-----~e~~~~~--~~~~~~~~~~~f~~LPl~~~i~~~il~vHgGi~ 176 (826)
...+. . .+..+.+ ..+..+.+.+||+.||++... +++++||||+.
T Consensus 80 ~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~lP~~~~~-~~~~~VHAg~~ 143 (222)
T cd07413 80 WHTKDPSGGEWLRAHSKKNLRQHQAFLEQFREHSEEHKDWLEWFKTLPLFLDL-GGVRVVHACWD 143 (222)
T ss_pred hhhCCcccchhhhcCCCcccccHHHHHHHHhccchhHHHHHHHHhcCCcEEEE-CCEEEEECCcC
Confidence 54321 0 1122222 134567889999999999876 58999999985
No 29
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=99.78 E-value=1.3e-18 Score=183.23 Aligned_cols=148 Identities=22% Similarity=0.241 Sum_probs=109.8
Q ss_pred CeeEEecCCCCHHHHHHHHHhCCCC------CCCcccccCcccCCCCCcHHHHHHHHHhhhccCC-cEEEECCCChhhhh
Q psy17085 57 PLKICGDIHGQYLDLLMLFDYGKYP------PKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPG-MFHLLRGNHECANI 129 (826)
Q Consensus 57 ~i~viGDIHG~~~~L~~~l~~~g~~------~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~-~v~~lrGNHE~~~~ 129 (826)
++++||||||+++.|.++|+.+... ..+.+||||||||||++|.+|+++|.+++..+|. ++++|+||||.+++
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~l 82 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAFA 82 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHHH
Confidence 6899999999999999999865421 2457999999999999999999999999988875 68999999998877
Q ss_pred HhhhCC---------h------------------------------------------------------HHHHHHHh--
Q psy17085 130 NKVYGF---------Y------------------------------------------------------DECKRRYN-- 144 (826)
Q Consensus 130 ~~~~gf---------~------------------------------------------------------~e~~~~~~-- 144 (826)
..+... . .+..+.|+
T Consensus 83 ~fL~~~p~~~d~~~f~~~w~~~~~~~e~~~~~~~~~~~~~h~~g~~W~~~~~~~~~~~~~~~~~~~~~gg~~Tl~SYGv~ 162 (304)
T cd07421 83 AFLGVLPRPSDGSEFKSTWKEYEKNEEREGWYKGEGFENMHLQGRRWAGKMKVTFNTVRGEPYKGSIYDARPTFESYGVP 162 (304)
T ss_pred hHhhcCCCccchhhhhhhhccccccccccccccccccccccccccchhhhccccccccccccccccccCcHHHHHHcCCC
Confidence 654320 0 11222231
Q ss_pred -------HHHHHHHHHHHhcCCcEEEECCcE-------------EEEeCCCCCCcCCHHHHhhcc-CCCCCCCCCccccc
Q psy17085 145 -------VKLWKTFTECFNCMPVAAIVDEKI-------------FCCHGGLSPYLSSIDQIRRIS-RPTRVPEQGLLCDL 203 (826)
Q Consensus 145 -------~~~~~~~~~~f~~LPl~~~i~~~i-------------l~vHgGi~~~~~~l~~i~~i~-r~~~~~~~~~~~dl 203 (826)
..+-+...+|++.||.....+ ++ +|||||+.|...--+|.+.+. +... ..-.++
T Consensus 163 ~~~~~l~~avP~~H~~fl~~l~~~~~~~-~~~~~~~~g~~~~~lifVHAGlrPg~pLe~Q~~~L~~~d~~----~p~~~~ 237 (304)
T cd07421 163 HGSSDLIKAVPEEHKKFLRNLVWVHEED-DVCIETEEGLKHCKLIAVHAGLEKSNSVEEQLKLLRTKDTS----IPKIAP 237 (304)
T ss_pred cchHHHHHhCCHHHHHHHHhCCceEEeC-cccccccccccccceEEEEcccCCCCChHHhhhhhhccccc----cccccc
Confidence 233456889999999998754 55 999999999877556655432 2222 222488
Q ss_pred ccCCcc
Q psy17085 204 LWSDPE 209 (826)
Q Consensus 204 lWsdP~ 209 (826)
||.+.+
T Consensus 238 l~~R~~ 243 (304)
T cd07421 238 LSGRKN 243 (304)
T ss_pred cccchh
Confidence 999875
No 30
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.77 E-value=1.3e-18 Score=180.75 Aligned_cols=116 Identities=24% Similarity=0.301 Sum_probs=91.0
Q ss_pred CCCeeEEecCCCCHHHHHHHHHhCCCC-CCCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhh
Q psy17085 55 GTPLKICGDIHGQYLDLLMLFDYGKYP-PKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVY 133 (826)
Q Consensus 55 ~~~i~viGDIHG~~~~L~~~l~~~g~~-~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~ 133 (826)
.++++||||||||+++|+++|+.+++. ..++++||||+|||||+|.||+++|... +++.|+||||.+.++...
T Consensus 16 ~~ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~vl~~l~~~------~~~~v~GNHE~~~l~~~~ 89 (218)
T PRK11439 16 WRHIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQLLEEH------WVRAVRGNHEQMALDALA 89 (218)
T ss_pred CCeEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHHHHHHHHcC------CceEeeCchHHHHHHHHH
Confidence 358999999999999999999999886 5688999999999999999999999652 478999999999987543
Q ss_pred CChH--------HHHHHH---hHHHHHHHHHHHhcCCcEEEE---CCcEEEEeCCCC
Q psy17085 134 GFYD--------ECKRRY---NVKLWKTFTECFNCMPVAAIV---DEKIFCCHGGLS 176 (826)
Q Consensus 134 gf~~--------e~~~~~---~~~~~~~~~~~f~~LPl~~~i---~~~il~vHgGi~ 176 (826)
+-.. +....+ ..+....+.++++.||++..+ ++++++||||++
T Consensus 90 ~~~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p 146 (218)
T PRK11439 90 SQQMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYP 146 (218)
T ss_pred CCccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCC
Confidence 2110 001111 123456677999999999765 357999999974
No 31
>PHA02239 putative protein phosphatase
Probab=99.75 E-value=4.7e-18 Score=177.68 Aligned_cols=137 Identities=25% Similarity=0.384 Sum_probs=102.6
Q ss_pred CCeeEEecCCCCHHHHHHHHHhCCCC--CCCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhh
Q psy17085 56 TPLKICGDIHGQYLDLLMLFDYGKYP--PKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVY 133 (826)
Q Consensus 56 ~~i~viGDIHG~~~~L~~~l~~~g~~--~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~ 133 (826)
|++++||||||++..|.++++.+... +.+.+||+|||||||++|.+++..++.+.. .+.++++|+||||.++++...
T Consensus 1 m~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~~~~-~~~~~~~l~GNHE~~~l~~~~ 79 (235)
T PHA02239 1 MAIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMS-NDDNVVTLLGNHDDEFYNIME 79 (235)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHHHhh-cCCCeEEEECCcHHHHHHHHh
Confidence 57899999999999999999987543 468899999999999999999999998753 456799999999998765432
Q ss_pred CCh--------------HHHHHHHh-------------------------------HHHHHHHHHHHhcCCcEEEECCcE
Q psy17085 134 GFY--------------DECKRRYN-------------------------------VKLWKTFTECFNCMPVAAIVDEKI 168 (826)
Q Consensus 134 gf~--------------~e~~~~~~-------------------------------~~~~~~~~~~f~~LPl~~~i~~~i 168 (826)
+.. .+....|+ ...+..+..+++.||++... +++
T Consensus 80 ~~~~~~~~~~~wl~~GG~~Tl~Syg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~lp~~~~~-~~~ 158 (235)
T PHA02239 80 NVDRLSIYDIEWLSRYCIETLNSYGVSTVTLKYSSVEENLRNNYDFIKSELKKLKESDDYRKFKILMVNCRKYYKE-DKY 158 (235)
T ss_pred CchhcccchHHHHHcCCHHHHHHcCCCCccchhhHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHhCcceEEE-CCE
Confidence 110 11112221 11335566799999999886 589
Q ss_pred EEEeCCCCCCcCCHHHHhhccCCCCCCCCCcccccccCCc
Q psy17085 169 FCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDP 208 (826)
Q Consensus 169 l~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~~dllWsdP 208 (826)
++||||+.|. +|.+ .+...+++|.+.
T Consensus 159 ifVHAGi~p~-----------~~~~---~q~~~~llWiR~ 184 (235)
T PHA02239 159 IFSHSGGVSW-----------KPVE---EQTIDQLIWSRD 184 (235)
T ss_pred EEEeCCCCCC-----------CChh---hCCHhHeEEecc
Confidence 9999999884 2221 234578999996
No 32
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.74 E-value=1.1e-17 Score=172.52 Aligned_cols=143 Identities=27% Similarity=0.332 Sum_probs=105.1
Q ss_pred CCeeEEecCCCCHHHHHHHHHhCCCC-CCCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhhC
Q psy17085 56 TPLKICGDIHGQYLDLLMLFDYGKYP-PKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYG 134 (826)
Q Consensus 56 ~~i~viGDIHG~~~~L~~~l~~~g~~-~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~g 134 (826)
++++||||||||+.+|.++++..++. ..+.++|+|||||||+++.|++++|.. .++++++||||.+.+....+
T Consensus 1 ~ri~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~~~~~~~l~~------~~~~~v~GNhe~~~~~~~~~ 74 (207)
T cd07424 1 GRDFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESLACLELLLE------PWFHAVRGNHEQMAIDALRA 74 (207)
T ss_pred CCEEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCHHHHHHHHhc------CCEEEeECCChHHHHhHhhC
Confidence 47899999999999999999998875 468899999999999999999998865 25899999999998877654
Q ss_pred C--hHHHHHHH---------hHHHHHHHHHHHhcCCcEEEEC---CcEEEEeCCCCCCcCCHHHHhhccCCCCCCCCCcc
Q psy17085 135 F--YDECKRRY---------NVKLWKTFTECFNCMPVAAIVD---EKIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLL 200 (826)
Q Consensus 135 f--~~e~~~~~---------~~~~~~~~~~~f~~LPl~~~i~---~~il~vHgGi~~~~~~l~~i~~i~r~~~~~~~~~~ 200 (826)
. ..+...+. ...+.+.+.++|+.||++..++ ++++++|||+++... ...+.. +.......
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~~~-~~~~~~-----~~~~~~~~ 148 (207)
T cd07424 75 EPLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSDDW-SDGVGA-----VTLRPEDI 148 (207)
T ss_pred CCcchhHHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcchh-hhhhhc-----cccCcccc
Confidence 2 12221111 2235666889999999999874 479999999865321 111110 11233456
Q ss_pred cccccCCccc
Q psy17085 201 CDLLWSDPEK 210 (826)
Q Consensus 201 ~dllWsdP~~ 210 (826)
.+++|++|..
T Consensus 149 ~~~~w~~~~~ 158 (207)
T cd07424 149 EELLWSRTRI 158 (207)
T ss_pred eeeeeccchh
Confidence 7899998763
No 33
>smart00020 Tryp_SPc Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.
Probab=99.73 E-value=4.4e-17 Score=169.41 Aligned_cols=172 Identities=23% Similarity=0.295 Sum_probs=134.7
Q ss_pred EEEEcceecccccccccccccccccCCcCCccccCCceEEEEeCcccccCcceeeeecCCCcccccCCCCCEEEEEecCc
Q psy17085 227 EVKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWGY 306 (826)
Q Consensus 227 ~V~~G~~~~~~~~~~~~~~V~~ii~HP~Y~~~~~~nDIALLkL~~pv~~~~~V~PIcLp~~~~~~~~~~g~~c~vsGWG~ 306 (826)
.|++|........+.+...|.+++.||+|+.....+|+|||+|.+|+.+++.++|+|||... .....+..+.+.|||.
T Consensus 54 ~v~~g~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~DiAll~L~~~i~~~~~~~pi~l~~~~--~~~~~~~~~~~~g~g~ 131 (229)
T smart00020 54 RVRLGSHDLSSGEEGQVIKVSKVIIHPNYNPSTYDNDIALLKLKSPVTLSDNVRPICLPSSN--YNVPAGTTCTVSGWGR 131 (229)
T ss_pred EEEeCcccCCCCCCceEEeeEEEEECCCCCCCCCcCCEEEEEECcccCCCCceeeccCCCcc--cccCCCCEEEEEeCCC
Confidence 45588776654333367889999999999988899999999999999999999999999863 2344578999999998
Q ss_pred ccC-CCCCCcCceEEEEeccChhhhhccccccccccccccccccccccCC---CCCCCCCCCCCeeEEeECCeEEEEEEE
Q psy17085 307 YTY-TTAISNAKNTLKFPGMSLQILQWFVDSYHSIHLENYATEAAISNAN---NTLKFPGMSLQILQWFVDSYKLNSSLG 382 (826)
Q Consensus 307 t~~-~~~~s~~Lq~v~v~vis~~~C~~~~~~~~~~~i~~~~~~~~~~~~~---~~~g~~Gdsggpl~~~~~~~~~l~GIv 382 (826)
... .+..+..++...+.+++.+.|.+.+..... ......|... ....|+|++|+|+....+ .|.+.||+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~------~~~~~~C~~~~~~~~~~c~gdsG~pl~~~~~-~~~l~Gi~ 204 (229)
T smart00020 132 TSEGAGSLPDTLQEVNVPIVSNATCRRAYSGGGA------ITDNMLCAGGLEGGKDACQGDSGGPLVCNDG-RWVLVGIV 204 (229)
T ss_pred CCCCCCcCCCEeeEEEEEEeCHHHhhhhhccccc------cCCCcEeecCCCCCCcccCCCCCCeeEEECC-CEEEEEEE
Confidence 653 234567899999999999999854432100 1122223222 345699999999998877 89999999
Q ss_pred EecCCCCCCCCCCeEEEECcccHHHH
Q psy17085 383 AVAPTPKPQSGLFVYGVKFLQWLYWF 408 (826)
Q Consensus 383 S~g~~~c~~~~~P~VyTrVs~Y~dWI 408 (826)
|+|. .|...+.|.+||||+.|.+||
T Consensus 205 s~g~-~C~~~~~~~~~~~i~~~~~WI 229 (229)
T smart00020 205 SWGS-GCARPGKPGVYTRVSSYLDWI 229 (229)
T ss_pred EECC-CCCCCCCCCEEEEeccccccC
Confidence 9995 888778999999999999998
No 34
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.72 E-value=1.5e-17 Score=171.19 Aligned_cols=118 Identities=25% Similarity=0.391 Sum_probs=92.0
Q ss_pred eEEecCCCCHHHHHHHHHhCCC--------CCCCcccccCcccCCCCCcHHHHHHHHHhhhc---cCCcEEEECCCChhh
Q psy17085 59 KICGDIHGQYLDLLMLFDYGKY--------PPKSRYLFLGDYVDRGSNSLETICLLLAYKIK---YPGMFHLLRGNHECA 127 (826)
Q Consensus 59 ~viGDIHG~~~~L~~~l~~~g~--------~~~~~~vflGD~VDrG~~s~evl~ll~~lk~~---~p~~v~~lrGNHE~~ 127 (826)
+||||||||+++|.++|+..++ .+.+.+||+||+||||+++.||+++|+.++.. .+.+++.|+||||.+
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 5899999999999999998875 34688999999999999999999999998754 356899999999999
Q ss_pred hhHhhhCCh--HHHHHHHh-----HHH---HHHHHHHHhcCCcEEEECCcEEEEeCCCCC
Q psy17085 128 NINKVYGFY--DECKRRYN-----VKL---WKTFTECFNCMPVAAIVDEKIFCCHGGLSP 177 (826)
Q Consensus 128 ~~~~~~gf~--~e~~~~~~-----~~~---~~~~~~~f~~LPl~~~i~~~il~vHgGi~~ 177 (826)
.++..+.+. .+...... ... ...+.+|++.+|+...++ ++++||||++|
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~~-~~~fvHag~~~ 139 (208)
T cd07425 81 NLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKVN-DTLFVHGGLGP 139 (208)
T ss_pred HHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEEC-CEEEEeCCcHH
Confidence 887543322 11111111 111 234589999999999886 68999999955
No 35
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.68 E-value=2.8e-16 Score=163.15 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=87.6
Q ss_pred CCeeEEecCCCCHHHHHHHHHhCCCC-CCCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhhC
Q psy17085 56 TPLKICGDIHGQYLDLLMLFDYGKYP-PKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYG 134 (826)
Q Consensus 56 ~~i~viGDIHG~~~~L~~~l~~~g~~-~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~g 134 (826)
++++||||||||+++|+++++...+. ..+.++|+|||||||++|.||++++.+ .+++.||||||.++++....
T Consensus 15 ~ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~~~l~~l~~------~~~~~v~GNHE~~~~~~~~~ 88 (218)
T PRK09968 15 RHIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLLNQ------PWFISVKGNHEAMALDAFET 88 (218)
T ss_pred CeEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHHHHHHHHhh------CCcEEEECchHHHHHHHHhc
Confidence 48999999999999999999998864 468899999999999999999998864 25789999999988865421
Q ss_pred ChH--------HHHHHHh---HHHHHHHHHHHhcCCcEEEEC---CcEEEEeCCCC
Q psy17085 135 FYD--------ECKRRYN---VKLWKTFTECFNCMPVAAIVD---EKIFCCHGGLS 176 (826)
Q Consensus 135 f~~--------e~~~~~~---~~~~~~~~~~f~~LPl~~~i~---~~il~vHgGi~ 176 (826)
-.. +...... .........+++.||++..+. +++++||||++
T Consensus 89 ~~~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p 144 (218)
T PRK09968 89 GDGNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYP 144 (218)
T ss_pred CChhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCC
Confidence 100 0001111 123344567899999998762 46899999984
No 36
>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine proteases belong to the MEROPS peptidase family S1 (chymotrypsin family, clan PA(S))and to peptidase family S6 (Hap serine peptidases). The chymotrypsin family is almost totally confined to animals, although trypsin-like enzymes are found in actinomycetes of the genera Streptomyces and Saccharopolyspora, and in the fungus Fusarium oxysporum []. The enzymes are inherently secreted, being synthesised with a signal peptide that targets them to the secretory pathway. Animal enzymes are either secreted directly, packaged into vesicles for regulated secretion, or are retained in leukocyte granules []. The Hap family, 'Haemophilus adhesion and penetration', are proteins that play a role in the interaction with human epithelial cells. The serine protease activity is localized at the N-terminal domain, whereas the binding domain is in the C-terminal region. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1SPJ_A 1A5I_A 2ZGH_A 2ZKS_A 2ZGJ_A 2ZGC_A 2ODP_A 2I6Q_A 2I6S_A 2ODQ_A ....
Probab=99.66 E-value=5.2e-16 Score=159.86 Aligned_cols=166 Identities=23% Similarity=0.290 Sum_probs=128.3
Q ss_pred EEEcceecccccc-cccccccccccCCcCCccccCCceEEEEeCcccccCcceeeeecCCCcccccCCCCCEEEEEecCc
Q psy17085 228 VKLGAHYLSSQLN-NAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWGY 306 (826)
Q Consensus 228 V~~G~~~~~~~~~-~~~~~V~~ii~HP~Y~~~~~~nDIALLkL~~pv~~~~~V~PIcLp~~~~~~~~~~g~~c~vsGWG~ 306 (826)
|++|......... .+.+.|.+++.||+|+.....+|||||+|.+++.+.+.++|+|++... .....+..+.+.|||.
T Consensus 52 v~~g~~~~~~~~~~~~~~~v~~~~~h~~~~~~~~~~DiAll~L~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~G~~~ 129 (220)
T PF00089_consen 52 VRLGTYSIRNSDGSEQTIKVSKIIIHPKYDPSTYDNDIALLKLDRPITFGDNIQPICLPSAG--SDPNVGTSCIVVGWGR 129 (220)
T ss_dssp EEESESBTTSTTTTSEEEEEEEEEEETTSBTTTTTTSEEEEEESSSSEHBSSBEESBBTSTT--HTTTTTSEEEEEESSB
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccc
Confidence 3467633332222 367899999999999988889999999999999999999999999844 2235688999999998
Q ss_pred ccCCCCCCcCceEEEEeccChhhhhccccccccccccccccccccccC--CCCCCCCCCCCCeeEEeECCeEEEEEEEEe
Q psy17085 307 YTYTTAISNAKNTLKFPGMSLQILQWFVDSYHSIHLENYATEAAISNA--NNTLKFPGMSLQILQWFVDSYKLNSSLGAV 384 (826)
Q Consensus 307 t~~~~~~s~~Lq~v~v~vis~~~C~~~~~~~~~~~i~~~~~~~~~~~~--~~~~g~~Gdsggpl~~~~~~~~~l~GIvS~ 384 (826)
....+ .+..++...+.+++.+.|+..+... ......|.. .....|.|++|+|+..... .+.||.++
T Consensus 130 ~~~~~-~~~~~~~~~~~~~~~~~c~~~~~~~--------~~~~~~c~~~~~~~~~~~g~sG~pl~~~~~---~lvGI~s~ 197 (220)
T PF00089_consen 130 TSDNG-YSSNLQSVTVPVVSRKTCRSSYNDN--------LTPNMICAGSSGSGDACQGDSGGPLICNNN---YLVGIVSF 197 (220)
T ss_dssp SSTTS-BTSBEEEEEEEEEEHHHHHHHTTTT--------STTTEEEEETTSSSBGGTTTTTSEEEETTE---EEEEEEEE
T ss_pred ccccc-ccccccccccccccccccccccccc--------ccccccccccccccccccccccccccccee---eecceeee
Confidence 65444 5678999999999999998542111 011222222 2235689999999986555 89999999
Q ss_pred cCCCCCCCCCCeEEEECcccHHHH
Q psy17085 385 APTPKPQSGLFVYGVKFLQWLYWF 408 (826)
Q Consensus 385 g~~~c~~~~~P~VyTrVs~Y~dWI 408 (826)
+ ..|...+.|.+||||+.|.+||
T Consensus 198 ~-~~c~~~~~~~v~~~v~~~~~WI 220 (220)
T PF00089_consen 198 G-ENCGSPNYPGVYTRVSSYLDWI 220 (220)
T ss_dssp E-SSSSBTTSEEEEEEGGGGHHHH
T ss_pred c-CCCCCCCcCEEEEEHHHhhccC
Confidence 9 8898888899999999999998
No 37
>COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.6e-13 Score=144.63 Aligned_cols=181 Identities=10% Similarity=0.021 Sum_probs=125.2
Q ss_pred cccccccccccccccccCCcCCccccCCceEEEEeCcccccC-cceeeeecCCCcccccCCCCCEEEEEecCcccCCC--
Q psy17085 235 LSSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFT-NFIQPICLPIKQYWQHDFAQAIATVAGWGYYTYTT-- 311 (826)
Q Consensus 235 ~~~~~~~~~~~V~~ii~HP~Y~~~~~~nDIALLkL~~pv~~~-~~V~PIcLp~~~~~~~~~~g~~c~vsGWG~t~~~~-- 311 (826)
++.....+...|.+++.|..|.+.++.||||+++|.++.... ..+.-.--+. ............+..+||.+.+..
T Consensus 97 l~d~Sq~~rg~vr~i~~~efY~~~n~~ND~Av~~l~~~a~~pr~ki~~~~~sd-t~l~sv~~~s~~~n~t~~~~~~~~v~ 175 (413)
T COG5640 97 LNDSSQAERGHVRTIYVHEFYSPGNLGNDIAVLELARAASLPRVKITSFDASD-TFLNSVTTVSPMTNGTFGVTTPSDVP 175 (413)
T ss_pred ccccccccCcceEEEeeecccccccccCcceeeccccccccchhheeeccCcc-cceecccccccccceeeeeeeecCCC
Confidence 333334567888999999999999999999999999876432 1221111111 001112223455667777654322
Q ss_pred -CCC--cCceEEEEeccChhhhhccccccccccccccccccccc-cCCCCCCCCCCCCCeeEEeECCeEEEEEEEEecCC
Q psy17085 312 -AIS--NAKNTLKFPGMSLQILQWFVDSYHSIHLENYATEAAIS-NANNTLKFPGMSLQILQWFVDSYKLNSSLGAVAPT 387 (826)
Q Consensus 312 -~~s--~~Lq~v~v~vis~~~C~~~~~~~~~~~i~~~~~~~~~~-~~~~~~g~~Gdsggpl~~~~~~~~~l~GIvS~g~~ 387 (826)
..+ ..|+++.+..++..+|+++.+-. ........--+.| +......|+||+|+|+.....+...+.||+|||..
T Consensus 176 ~~~p~gt~l~e~~v~fv~~stc~~~~g~a--n~~dg~~~lT~~cag~~~~daCqGDSGGPi~~~g~~G~vQ~GVvSwG~~ 253 (413)
T COG5640 176 RSSPKGTILHEVAVLFVPLSTCAQYKGCA--NASDGATGLTGFCAGRPPKDACQGDSGGPIFHKGEEGRVQRGVVSWGDG 253 (413)
T ss_pred CCCCccceeeeeeeeeechHHhhhhcccc--ccCCCCCCccceecCCCCcccccCCCCCceEEeCCCccEEEeEEEecCC
Confidence 223 37999999999999999766411 1111111111122 33446789999999999999999999999999998
Q ss_pred CCCCCCCCeEEEECcccHHHHHHHhccCCCC
Q psy17085 388 PKPQSGLFVYGVKFLQWLYWFHPKLKSERTA 418 (826)
Q Consensus 388 ~c~~~~~P~VyTrVs~Y~dWI~~~ik~~~~~ 418 (826)
+|+.+..|+|||+|+.|.+||...++.....
T Consensus 254 ~Cg~t~~~gVyT~vsny~~WI~a~~~~l~~~ 284 (413)
T COG5640 254 GCGGTLIPGVYTNVSNYQDWIAAMTNGLSYL 284 (413)
T ss_pred CCCCCCcceeEEehhHHHHHHHHHhcCCCcc
Confidence 9999999999999999999999998765443
No 38
>PRK09453 phosphodiesterase; Provisional
Probab=98.76 E-value=1.8e-08 Score=101.85 Aligned_cols=69 Identities=22% Similarity=0.250 Sum_probs=56.0
Q ss_pred CCeeEEecCCCCHHHHHHHHHhCCCCCCCcccccCcccCCCCC--------cHHHHHHHHHhhhccCCcEEEECCCChhh
Q psy17085 56 TPLKICGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSN--------SLETICLLLAYKIKYPGMFHLLRGNHECA 127 (826)
Q Consensus 56 ~~i~viGDIHG~~~~L~~~l~~~g~~~~~~~vflGD~VDrG~~--------s~evl~ll~~lk~~~p~~v~~lrGNHE~~ 127 (826)
|++.|++|+||++.++.++++.+...+.+.++++||++|+|++ ..++++.+..+. ..+++++||||..
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~----~~v~~V~GNhD~~ 76 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYA----DKIIAVRGNCDSE 76 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhcC----CceEEEccCCcch
Confidence 6899999999999999999988755566889999999999873 456777665543 3589999999964
Q ss_pred h
Q psy17085 128 N 128 (826)
Q Consensus 128 ~ 128 (826)
.
T Consensus 77 ~ 77 (182)
T PRK09453 77 V 77 (182)
T ss_pred h
Confidence 3
No 39
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=98.67 E-value=4.2e-08 Score=95.25 Aligned_cols=76 Identities=25% Similarity=0.262 Sum_probs=57.6
Q ss_pred CCeeEEecCCCCHHHH----HHHHHhCCCCCCCcccccCcccCCCCCcHHHHHHH--HHhhhccCCcEEEECCCChhhhh
Q psy17085 56 TPLKICGDIHGQYLDL----LMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLL--LAYKIKYPGMFHLLRGNHECANI 129 (826)
Q Consensus 56 ~~i~viGDIHG~~~~L----~~~l~~~g~~~~~~~vflGD~VDrG~~s~evl~ll--~~lk~~~p~~v~~lrGNHE~~~~ 129 (826)
++++++||+|+..... ..+.+.....+.+.+|++||++|+|..+.+..... .......+..+++++||||....
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~~ 80 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYSG 80 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHHH
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhcccccccccccccccee
Confidence 4789999999999987 33344333455678999999999999887777654 44455566789999999999876
Q ss_pred Hh
Q psy17085 130 NK 131 (826)
Q Consensus 130 ~~ 131 (826)
..
T Consensus 81 ~~ 82 (200)
T PF00149_consen 81 NS 82 (200)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 40
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.53 E-value=1.9e-07 Score=91.65 Aligned_cols=84 Identities=21% Similarity=0.267 Sum_probs=63.6
Q ss_pred CeeEEecCCCCHHHHHHHHHhCCCCCCCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhhCCh
Q psy17085 57 PLKICGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFY 136 (826)
Q Consensus 57 ~i~viGDIHG~~~~L~~~l~~~g~~~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~gf~ 136 (826)
++.+++|+||+...+.++++.... .+.++++||+++++.... ++ ....+++++||||....
T Consensus 1 ~i~~isD~H~~~~~~~~~~~~~~~--~d~ii~~GD~~~~~~~~~--------~~--~~~~~~~V~GNhD~~~~------- 61 (155)
T cd00841 1 KIGVISDTHGSLELLEKALELFGD--VDLIIHAGDVLYPGPLNE--------LE--LKAPVIAVRGNCDGEVD------- 61 (155)
T ss_pred CEEEEecCCCCHHHHHHHHHHhcC--CCEEEECCccccccccch--------hh--cCCcEEEEeCCCCCcCC-------
Confidence 478999999999999999998654 688999999999998665 11 12458999999996432
Q ss_pred HHHHHHHhHHHHHHHHHHHhcCCcEEEE--C-CcEEEEeCCCCC
Q psy17085 137 DECKRRYNVKLWKTFTECFNCMPVAAIV--D-EKIFCCHGGLSP 177 (826)
Q Consensus 137 ~e~~~~~~~~~~~~~~~~f~~LPl~~~i--~-~~il~vHgGi~~ 177 (826)
+..+|....+ + .+++++||...+
T Consensus 62 ------------------~~~~p~~~~~~~~g~~i~v~Hg~~~~ 87 (155)
T cd00841 62 ------------------FPILPEEAVLEIGGKRIFLTHGHLYG 87 (155)
T ss_pred ------------------cccCCceEEEEECCEEEEEECCcccc
Confidence 3556655444 3 379999998644
No 41
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.46 E-value=4.8e-07 Score=89.20 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=49.1
Q ss_pred CCeeEEecCCCCHHHHHHHHHhCCCC-CCCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChh
Q psy17085 56 TPLKICGDIHGQYLDLLMLFDYGKYP-PKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHEC 126 (826)
Q Consensus 56 ~~i~viGDIHG~~~~L~~~l~~~g~~-~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~ 126 (826)
|++.+++|+||++.++..+++..... ..+.++++||++ +.+++..+..+. ..++.++||||.
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~-----~~~~~~~l~~~~----~~~~~V~GN~D~ 63 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLT-----SPFVLKEFEDLA----AKVIAVRGNNDG 63 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCC-----CHHHHHHHHHhC----CceEEEccCCCc
Confidence 68999999999998877766655544 568899999999 457777776553 248999999997
No 42
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=98.34 E-value=6.2e-07 Score=87.50 Aligned_cols=63 Identities=25% Similarity=0.369 Sum_probs=47.7
Q ss_pred CCeeEEecCCCCHHHHHHHHHhCCCCCCCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhH
Q psy17085 56 TPLKICGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANIN 130 (826)
Q Consensus 56 ~~i~viGDIHG~~~~L~~~l~~~g~~~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~ 130 (826)
|+++++||+|++...+.++++.. ...+.++++||++|+ .++++.+... .++.++||||.....
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~--~~~d~vi~~GDi~~~----~~~~~~~~~~------~~~~v~GNHD~~~~~ 63 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI--NEPDFVIILGDIFDP----EEVLELLRDI------PVYVVRGNHDNWAFP 63 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH--TTESEEEEES-SCSH----HHHHHHHHHH------EEEEE--CCHSTHHH
T ss_pred CEEEEEeCCCCChhHHHHHHHHh--cCCCEEEECCCchhH----HHHHHHHhcC------CEEEEeCCcccccch
Confidence 68999999999999999999987 346789999999993 7777777555 499999999966543
No 43
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.28 E-value=1.6e-06 Score=90.53 Aligned_cols=112 Identities=21% Similarity=0.252 Sum_probs=74.2
Q ss_pred CeeEEecCCCCHHHHH-HHHHhCCCCCCCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhH-----
Q psy17085 57 PLKICGDIHGQYLDLL-MLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANIN----- 130 (826)
Q Consensus 57 ~i~viGDIHG~~~~L~-~~l~~~g~~~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~----- 130 (826)
+++++|||||++.... +.++.. ..|.++++||+++. +.+++..|..+. ..++.++||||.....
T Consensus 2 rIa~isDiHg~~~~~~~~~l~~~---~pD~Vl~~GDi~~~---~~~~~~~l~~l~----~p~~~V~GNHD~~~~~~~~~k 71 (238)
T cd07397 2 RIAIVGDVHGQWDLEDIKALHLL---QPDLVLFVGDFGNE---SVQLVRAISSLP----LPKAVILGNHDAWYDATFRKK 71 (238)
T ss_pred EEEEEecCCCCchHHHHHHHhcc---CCCEEEECCCCCcC---hHHHHHHHHhCC----CCeEEEcCCCcccccccccch
Confidence 5899999999988643 344433 24789999999864 567777766553 3489999999975432
Q ss_pred --h------h-------hC------------------------C-hHHHHHHHh-HHHHHHHHHHHhcCCcEEEECCcEE
Q psy17085 131 --K------V-------YG------------------------F-YDECKRRYN-VKLWKTFTECFNCMPVAAIVDEKIF 169 (826)
Q Consensus 131 --~------~-------~g------------------------f-~~e~~~~~~-~~~~~~~~~~f~~LPl~~~i~~~il 169 (826)
. . ++ + ..++++.|+ ....+.+...++.++.+.....+++
T Consensus 72 ~~~l~~~L~~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fgi~s~~eA~~~ive~~~~~~~~~~~Vl 151 (238)
T cd07397 72 GDRVQEQLELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYGVISLEESAQRIIAAAKKAPPDLPLIL 151 (238)
T ss_pred HHHHHHHHHHhCCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhCCCCHHHHHHHHHHHhhhcCCCCCeEE
Confidence 0 0 00 0 024666663 3455667777888864433345899
Q ss_pred EEeCCCCCC
Q psy17085 170 CCHGGLSPY 178 (826)
Q Consensus 170 ~vHgGi~~~ 178 (826)
+.|+++.-.
T Consensus 152 iaH~~~~G~ 160 (238)
T cd07397 152 LAHNGPSGL 160 (238)
T ss_pred EeCcCCcCC
Confidence 999998653
No 44
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.16 E-value=4.1e-06 Score=87.20 Aligned_cols=72 Identities=8% Similarity=0.070 Sum_probs=58.1
Q ss_pred CCCeeEEecCCCCHHHHHHHHHhCCCCCCCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhh
Q psy17085 55 GTPLKICGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECA 127 (826)
Q Consensus 55 ~~~i~viGDIHG~~~~L~~~l~~~g~~~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~ 127 (826)
.+++.+++||||++..+.++++......-|.+|++||++++|+..-++..++..+... +..++.++||||..
T Consensus 4 ~~kIl~iSDiHgn~~~le~l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l-~~pv~~V~GNhD~~ 75 (224)
T cd07388 4 VRYVLATSNPKGDLEALEKLVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFRILGEA-HLPTFYVPGPQDAP 75 (224)
T ss_pred eeEEEEEEecCCCHHHHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhc-CCceEEEcCCCChH
Confidence 3679999999999999999998764445688999999999997777777777666432 23589999999975
No 45
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.00 E-value=7.8e-06 Score=78.36 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=42.3
Q ss_pred CeeEEecCCCCHHHHHHHHHhCCCCCCCcccccCcccCCCCCcH--HHHHHHHHhhhccCCcEEEECCCChhh
Q psy17085 57 PLKICGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSL--ETICLLLAYKIKYPGMFHLLRGNHECA 127 (826)
Q Consensus 57 ~i~viGDIHG~~~~L~~~l~~~g~~~~~~~vflGD~VDrG~~s~--evl~ll~~lk~~~p~~v~~lrGNHE~~ 127 (826)
++.++||+||++. .......|.++++||++++|.... +.+.++..++ .| .++++.||||..
T Consensus 1 ~i~~isD~H~~~~-------~~~~~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~~--~~-~~~~v~GNHD~~ 63 (135)
T cd07379 1 RFVCISDTHSRHR-------TISIPDGDVLIHAGDLTERGTLEELQKFLDWLKSLP--HP-HKIVIAGNHDLT 63 (135)
T ss_pred CEEEEeCCCCCCC-------cCcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhCC--CC-eEEEEECCCCCc
Confidence 4789999999977 123345678999999999986432 3455554443 11 367899999953
No 46
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=97.86 E-value=3.8e-05 Score=71.43 Aligned_cols=67 Identities=25% Similarity=0.337 Sum_probs=49.8
Q ss_pred eEEecCCCCHHHHHHHH--HhCCCCCCCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCCh
Q psy17085 59 KICGDIHGQYLDLLMLF--DYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHE 125 (826)
Q Consensus 59 ~viGDIHG~~~~L~~~l--~~~g~~~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE 125 (826)
+++||+|+......... ........+.++++||+++.+....+...............++++.||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCCEEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce
Confidence 47899999999988765 33333445779999999999988777655423333344567999999999
No 47
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=97.77 E-value=3.7e-05 Score=77.37 Aligned_cols=64 Identities=25% Similarity=0.222 Sum_probs=45.7
Q ss_pred eeEEecCCCCHHHHHHHHHhCCCCCCCcccccCcccCCCCCc-HHHHHHHHHhhhccCCcEEEECCCChhh
Q psy17085 58 LKICGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNS-LETICLLLAYKIKYPGMFHLLRGNHECA 127 (826)
Q Consensus 58 i~viGDIHG~~~~L~~~l~~~g~~~~~~~vflGD~VDrG~~s-~evl~ll~~lk~~~p~~v~~lrGNHE~~ 127 (826)
+.++||+||++..+.. ......+.|.+|+.||++++|... .+.+..+..+ +..++.+.||||..
T Consensus 1 i~~~sD~H~~~~~~~~--~~~~~~~~D~vv~~GDl~~~~~~~~~~~~~~l~~~----~~p~~~v~GNHD~~ 65 (188)
T cd07392 1 ILAISDIHGDVEKLEA--IILKAEEADAVIVAGDITNFGGKEAAVEINLLLAI----GVPVLAVPGNCDTP 65 (188)
T ss_pred CEEEEecCCCHHHHHH--HHhhccCCCEEEECCCccCcCCHHHHHHHHHHHhc----CCCEEEEcCCCCCH
Confidence 5789999999998876 222333458899999999998753 3333333332 34589999999964
No 48
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=97.75 E-value=0.00011 Score=74.17 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=43.0
Q ss_pred CeeEEecCC-CCHH-----HHHHHHHhCCCCCCCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChh
Q psy17085 57 PLKICGDIH-GQYL-----DLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHEC 126 (826)
Q Consensus 57 ~i~viGDIH-G~~~-----~L~~~l~~~g~~~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~ 126 (826)
.+.||+|.| |.-. .+.++++. ...+.++.+||+++ .+++.++..+. ..++.++||||.
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~---~~~d~iih~GDi~~-----~~~~~~l~~~~----~~~~~V~GN~D~ 64 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVP---GKIQHVLCTGNLCS-----KETYDYLKTIA----PDVHIVRGDFDE 64 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhcc---CCCCEEEECCCCCC-----HHHHHHHHhhC----CceEEEECCCCc
Confidence 378999999 5543 35566654 34578999999987 67777776653 248999999996
No 49
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=97.61 E-value=9.3e-05 Score=78.28 Aligned_cols=70 Identities=19% Similarity=0.198 Sum_probs=48.5
Q ss_pred CCeeEEecCCCC------HHHHHHHHHhCCCCCCCcccccCcccCC--C-----CCcHHHHHHHHHhhhccCCcEEEECC
Q psy17085 56 TPLKICGDIHGQ------YLDLLMLFDYGKYPPKSRYLFLGDYVDR--G-----SNSLETICLLLAYKIKYPGMFHLLRG 122 (826)
Q Consensus 56 ~~i~viGDIHG~------~~~L~~~l~~~g~~~~~~~vflGD~VDr--G-----~~s~evl~ll~~lk~~~p~~v~~lrG 122 (826)
|++++++|+|.. ...+.+.++... ...+.++++||++|. | +...+++.++..++.. +..++++.|
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~~-~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~-g~~v~~v~G 78 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGEA-RQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDS-GVPCYFMHG 78 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhhh-ccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHc-CCeEEEEeC
Confidence 689999999954 234555554322 235789999999985 2 2345677777777532 246999999
Q ss_pred CChhh
Q psy17085 123 NHECA 127 (826)
Q Consensus 123 NHE~~ 127 (826)
|||..
T Consensus 79 NHD~~ 83 (241)
T PRK05340 79 NRDFL 83 (241)
T ss_pred CCchh
Confidence 99964
No 50
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=97.54 E-value=0.00012 Score=78.93 Aligned_cols=70 Identities=19% Similarity=0.030 Sum_probs=51.4
Q ss_pred CCeeEEecCCCC----HHHHHHHHHhCCCCCCCcccccCcccCCC--CCcHHHHHHHHHhhhccCCcEEEECCCChhh
Q psy17085 56 TPLKICGDIHGQ----YLDLLMLFDYGKYPPKSRYLFLGDYVDRG--SNSLETICLLLAYKIKYPGMFHLLRGNHECA 127 (826)
Q Consensus 56 ~~i~viGDIHG~----~~~L~~~l~~~g~~~~~~~vflGD~VDrG--~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~ 127 (826)
+++++++|+|.. ...+.++++...-...|.+++.||++|++ ....+....+..++... .++.+.||||..
T Consensus 50 ~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pDlVli~GD~~d~~~~~~~~~~~~~L~~L~~~~--pv~~V~GNHD~~ 125 (271)
T PRK11340 50 FKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFDMPLNFSAFSDVLSPLAECA--PTFACFGNHDRP 125 (271)
T ss_pred cEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCCEEEEccCcCCCCccccHHHHHHHHHHHhhcC--CEEEecCCCCcc
Confidence 679999999976 55567777665544567899999999953 23345666677776544 499999999963
No 51
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=97.52 E-value=0.00011 Score=76.43 Aligned_cols=71 Identities=24% Similarity=0.207 Sum_probs=52.0
Q ss_pred CCCeeEEecCCCCHH----HHHHHHHhCCCCCCCcccccCcccCCCCCcH-HHHHHHHHhhhccCCcEEEECCCChhh
Q psy17085 55 GTPLKICGDIHGQYL----DLLMLFDYGKYPPKSRYLFLGDYVDRGSNSL-ETICLLLAYKIKYPGMFHLLRGNHECA 127 (826)
Q Consensus 55 ~~~i~viGDIHG~~~----~L~~~l~~~g~~~~~~~vflGD~VDrG~~s~-evl~ll~~lk~~~p~~v~~lrGNHE~~ 127 (826)
.+++++++|+|+... .+.++++...-...+.+++.||++|.+.... +...++..+.. +..++++.||||..
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~~~~~~~l~~l~~--~~~v~~v~GNHD~~ 76 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKINALKPDLVVLTGDLVDGSVDVLELLLELLKKLKA--PLGVYAVLGNHDYY 76 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHhccCCCEEEEcCcccCCcchhhHHHHHHHhccCC--CCCEEEECCCcccc
Confidence 368999999998743 5666666655444578899999999987764 55555555432 34599999999974
No 52
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=97.52 E-value=6.5e-05 Score=74.55 Aligned_cols=67 Identities=24% Similarity=0.231 Sum_probs=47.2
Q ss_pred eeEEecCCCCHHHHHHHH-HhCCCCCCCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhh
Q psy17085 58 LKICGDIHGQYLDLLMLF-DYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECA 127 (826)
Q Consensus 58 i~viGDIHG~~~~L~~~l-~~~g~~~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~ 127 (826)
+.+++|+|+....+...+ +.......|.++++||+++++....... ++.. ...+..+++++||||..
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d~li~~GDi~~~~~~~~~~~-~~~~--~~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDADILVLAGDIGYLTDAPRFAP-LLLA--LKGFEPVIYVPGNHEFY 68 (166)
T ss_pred CceEccccccCccccccccccCCCCCCCEEEECCCCCCCcchHHHHH-HHHh--hcCCccEEEeCCCcceE
Confidence 468999999988776655 2233345578999999999887655443 2222 22345699999999975
No 53
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.19 E-value=0.00065 Score=64.69 Aligned_cols=56 Identities=18% Similarity=0.074 Sum_probs=41.6
Q ss_pred eEEecCCCCHHHHHHHHHhCCCCCCCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCCh
Q psy17085 59 KICGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHE 125 (826)
Q Consensus 59 ~viGDIHG~~~~L~~~l~~~g~~~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE 125 (826)
.|++|.||..+.+.++... ..+.+.++++||+. .+++..+..++ ...++.++||||
T Consensus 1 ~viSDtH~~~~~~~~~~~~--~~~~d~ii~~GD~~------~~~~~~~~~~~---~~~~~~V~GN~D 56 (129)
T cd07403 1 LVISDTESPALYSPEIKVR--LEGVDLILSAGDLP------KEYLEYLVTML---NVPVYYVHGNHD 56 (129)
T ss_pred CeeccccCccccchHHHhh--CCCCCEEEECCCCC------hHHHHHHHHHc---CCCEEEEeCCCc
Confidence 3899999998877777665 34568899999984 34566665542 224889999999
No 54
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=97.11 E-value=0.0007 Score=71.48 Aligned_cols=68 Identities=22% Similarity=0.141 Sum_probs=47.7
Q ss_pred CeeEEecCCCCH------HHHHHHHHhCCCCCCCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhh
Q psy17085 57 PLKICGDIHGQY------LDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECA 127 (826)
Q Consensus 57 ~i~viGDIHG~~------~~L~~~l~~~g~~~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~ 127 (826)
++.+++|+|+.+ ..|.++++...-...+.+|+.||++++.+.+.+.+..+..+ .+..++++.||||..
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~l~~~---~~~pv~~v~GNHD~~ 74 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKIDHLHIAGDISNDFQRSLPFIEKLQEL---KGIKVTFNAGNHDML 74 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCCEEEECCccccchhhHHHHHHHHHHh---cCCcEEEECCCCCCC
Confidence 478999999653 22455655554344678999999999876666666555543 234699999999964
No 55
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.03 E-value=0.001 Score=71.00 Aligned_cols=72 Identities=21% Similarity=0.217 Sum_probs=48.4
Q ss_pred CCeeEEecCCC-C-----------HHHHHHHHHhCCCCCCCcccccCcccCCCCCcHHHH----HHHHHhhhccCCcEEE
Q psy17085 56 TPLKICGDIHG-Q-----------YLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETI----CLLLAYKIKYPGMFHL 119 (826)
Q Consensus 56 ~~i~viGDIHG-~-----------~~~L~~~l~~~g~~~~~~~vflGD~VDrG~~s~evl----~ll~~lk~~~p~~v~~ 119 (826)
|+++.++|+|- . ...|.++++...-...|.+++.||++|+...+.+.. .++..++...|-.+++
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~ 80 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVV 80 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence 68899999993 2 234445555443344678999999999987665543 3444444333346999
Q ss_pred ECCCChhh
Q psy17085 120 LRGNHECA 127 (826)
Q Consensus 120 lrGNHE~~ 127 (826)
+.||||..
T Consensus 81 i~GNHD~~ 88 (253)
T TIGR00619 81 ISGNHDSA 88 (253)
T ss_pred EccCCCCh
Confidence 99999964
No 56
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=96.97 E-value=0.0016 Score=65.01 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=47.2
Q ss_pred CCeeEEecCCCCHHHHHHHHHhCCCCCCCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhh
Q psy17085 56 TPLKICGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECA 127 (826)
Q Consensus 56 ~~i~viGDIHG~~~~L~~~l~~~g~~~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~ 127 (826)
|++.|++|.||...+-.+..+.......+.+|.+||++.... +..+..- ...+++.++||.|..
T Consensus 2 m~ilviSDtH~~~~~~~~~~~~~~~~~~d~vih~GD~~~~~~-----~~~l~~~---~~~~i~~V~GN~D~~ 65 (172)
T COG0622 2 MKILVISDTHGPLRAIEKALKIFNLEKVDAVIHAGDSTSPFT-----LDALEGG---LAAKLIAVRGNCDGE 65 (172)
T ss_pred cEEEEEeccCCChhhhhHHHHHhhhcCCCEEEECCCcCCccc-----hHHhhcc---cccceEEEEccCCCc
Confidence 689999999999976666666666666788999999998763 2222220 225799999999964
No 57
>PHA02546 47 endonuclease subunit; Provisional
Probab=96.83 E-value=0.0016 Score=72.55 Aligned_cols=72 Identities=24% Similarity=0.309 Sum_probs=47.7
Q ss_pred CCeeEEecCC-C-----------CHHHHHHHHHhCCCCCCCcccccCcccCCC-CCcHHHHHHHHH----hhhccCCcEE
Q psy17085 56 TPLKICGDIH-G-----------QYLDLLMLFDYGKYPPKSRYLFLGDYVDRG-SNSLETICLLLA----YKIKYPGMFH 118 (826)
Q Consensus 56 ~~i~viGDIH-G-----------~~~~L~~~l~~~g~~~~~~~vflGD~VDrG-~~s~evl~ll~~----lk~~~p~~v~ 118 (826)
|+++.++|+| | ....|.++++...-..-+.+++.||++|+. +.+.+++.++.. .....+-.++
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~ 80 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLH 80 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 6899999999 4 223455555544444457899999999985 445555444433 1112345699
Q ss_pred EECCCChhh
Q psy17085 119 LLRGNHECA 127 (826)
Q Consensus 119 ~lrGNHE~~ 127 (826)
+|.||||..
T Consensus 81 ~I~GNHD~~ 89 (340)
T PHA02546 81 VLVGNHDMY 89 (340)
T ss_pred EEccCCCcc
Confidence 999999974
No 58
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=96.82 E-value=0.0025 Score=61.43 Aligned_cols=68 Identities=22% Similarity=0.136 Sum_probs=41.6
Q ss_pred eeEEecCCCCHH------H----HHHHHHhCCCCCCCcccccCcccCCCCCc--HHHHHHHHHhhhccCCcEEEECCCCh
Q psy17085 58 LKICGDIHGQYL------D----LLMLFDYGKYPPKSRYLFLGDYVDRGSNS--LETICLLLAYKIKYPGMFHLLRGNHE 125 (826)
Q Consensus 58 i~viGDIHG~~~------~----L~~~l~~~g~~~~~~~vflGD~VDrG~~s--~evl~ll~~lk~~~p~~v~~lrGNHE 125 (826)
++.++|+|-... . |.++++...-...+.++++||+++.|... .+...++..+.... ..++.++||||
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~GNHD 79 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKALDPDLVVITGDLTQRGLPEEFEEAREFLDALPAPL-EPVLVVPGNHD 79 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhccCCCEEEECCCCCCCCCHHHHHHHHHHHHHccccC-CcEEEeCCCCe
Confidence 467889993221 1 12234444334467899999999998642 12334444444221 26999999999
Q ss_pred h
Q psy17085 126 C 126 (826)
Q Consensus 126 ~ 126 (826)
.
T Consensus 80 ~ 80 (144)
T cd07400 80 V 80 (144)
T ss_pred E
Confidence 6
No 59
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.82 E-value=0.002 Score=69.17 Aligned_cols=72 Identities=24% Similarity=0.240 Sum_probs=46.8
Q ss_pred CeeEEecCC--C-----------CHHHHHHHHHhCCCCCCCcccccCcccCCCCC-cHHHHHHHHHhhhccCCcEEEECC
Q psy17085 57 PLKICGDIH--G-----------QYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSN-SLETICLLLAYKIKYPGMFHLLRG 122 (826)
Q Consensus 57 ~i~viGDIH--G-----------~~~~L~~~l~~~g~~~~~~~vflGD~VDrG~~-s~evl~ll~~lk~~~p~~v~~lrG 122 (826)
++.+++|+| . ....|.++++.+.....+-+|++||+++.|.. +.+-+..+...-...+-.++.+.|
T Consensus 2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p~~~v~G 81 (267)
T cd07396 2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNARAEEALDAVLAILDRLKGPVHHVLG 81 (267)
T ss_pred eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHHhcCCCEEEecC
Confidence 578999999 2 24556666666644445779999999998863 223333333322222345899999
Q ss_pred CChhhh
Q psy17085 123 NHECAN 128 (826)
Q Consensus 123 NHE~~~ 128 (826)
|||...
T Consensus 82 NHD~~~ 87 (267)
T cd07396 82 NHDLYN 87 (267)
T ss_pred cccccc
Confidence 999753
No 60
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=96.69 E-value=0.0023 Score=67.31 Aligned_cols=68 Identities=12% Similarity=0.063 Sum_probs=44.0
Q ss_pred eeEEecCCCCH------HHHHHHHHhCCCCCCCcccccCcccCCC--C---C--cHHHHHHHHHhhhccCCcEEEECCCC
Q psy17085 58 LKICGDIHGQY------LDLLMLFDYGKYPPKSRYLFLGDYVDRG--S---N--SLETICLLLAYKIKYPGMFHLLRGNH 124 (826)
Q Consensus 58 i~viGDIHG~~------~~L~~~l~~~g~~~~~~~vflGD~VDrG--~---~--s~evl~ll~~lk~~~p~~v~~lrGNH 124 (826)
+++++|+|... ..+.+.+..... ..+.++++||++|.. . . ..++...+..++.. +..++.+.|||
T Consensus 1 ~~~iSDlHl~~~~~~~~~~~l~~l~~~~~-~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~-~~~v~~v~GNH 78 (231)
T TIGR01854 1 TLFISDLHLSPERPDITALFLDFLREEAR-KADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQ-GVPCYFMHGNR 78 (231)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHHhhhc-cCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHC-CCeEEEEcCCC
Confidence 36899999542 245555544322 457899999999952 1 1 13455566666532 35699999999
Q ss_pred hhh
Q psy17085 125 ECA 127 (826)
Q Consensus 125 E~~ 127 (826)
|..
T Consensus 79 D~~ 81 (231)
T TIGR01854 79 DFL 81 (231)
T ss_pred chh
Confidence 964
No 61
>PRK04036 DNA polymerase II small subunit; Validated
Probab=96.66 E-value=0.0016 Score=76.15 Aligned_cols=114 Identities=16% Similarity=0.176 Sum_probs=60.8
Q ss_pred CCCeeEEecCC-CCH----HHHHHHHHhCC-C--------CCCCcccccCcccCC-CCCc---------------HHHHH
Q psy17085 55 GTPLKICGDIH-GQY----LDLLMLFDYGK-Y--------PPKSRYLFLGDYVDR-GSNS---------------LETIC 104 (826)
Q Consensus 55 ~~~i~viGDIH-G~~----~~L~~~l~~~g-~--------~~~~~~vflGD~VDr-G~~s---------------~evl~ 104 (826)
+..+++++|+| |.- ..+..+++.+. . ..-+.+|++||++|. |.++ .++..
T Consensus 243 ~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~ 322 (504)
T PRK04036 243 KVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAE 322 (504)
T ss_pred ccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHH
Confidence 45689999999 652 23444444332 1 223679999999994 3221 13445
Q ss_pred HHHHhhhccCCcEEEECCCChhhhhHhhh-CChHHHHHHHhHHHHHHHHHHHhcCCcEEEECC-cEEEEeCCC
Q psy17085 105 LLLAYKIKYPGMFHLLRGNHECANINKVY-GFYDECKRRYNVKLWKTFTECFNCMPVAAIVDE-KIFCCHGGL 175 (826)
Q Consensus 105 ll~~lk~~~p~~v~~lrGNHE~~~~~~~~-gf~~e~~~~~~~~~~~~~~~~f~~LPl~~~i~~-~il~vHgGi 175 (826)
+|..+.. .-.|++++||||........ .+...+...+. ..-..++.. |....+++ +++++||-.
T Consensus 323 ~L~~L~~--~i~V~~ipGNHD~~~~~lPQ~~l~~~l~~~l~----~~~v~~lsN-P~~i~l~G~~iLl~HG~~ 388 (504)
T PRK04036 323 YLKQIPE--DIKIIISPGNHDAVRQAEPQPAFPEEIRSLFP----EHNVTFVSN-PALVNLHGVDVLIYHGRS 388 (504)
T ss_pred HHHhhhc--CCeEEEecCCCcchhhccCCCCccHHHHHhcC----cCCeEEecC-CeEEEECCEEEEEECCCC
Confidence 5555532 24699999999975432211 11111111111 011223333 55444444 788999874
No 62
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=96.59 E-value=0.0042 Score=65.27 Aligned_cols=67 Identities=30% Similarity=0.247 Sum_probs=44.8
Q ss_pred CeeEEecCCCC------------HHHHHHHHHhCCCC--CCCcccccCcccCCCCCc-HH-HHHHHHHhhhccCCcEEEE
Q psy17085 57 PLKICGDIHGQ------------YLDLLMLFDYGKYP--PKSRYLFLGDYVDRGSNS-LE-TICLLLAYKIKYPGMFHLL 120 (826)
Q Consensus 57 ~i~viGDIHG~------------~~~L~~~l~~~g~~--~~~~~vflGD~VDrG~~s-~e-vl~ll~~lk~~~p~~v~~l 120 (826)
++++++|+|=. ...|.++++.+.-. ..+-+|++||+++.|... .+ +...+..+ +-.++.+
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~~----~~p~~~v 76 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSPESYERLRELLAAL----PIPVYLL 76 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCHHHHHHHHHHHhhc----CCCEEEe
Confidence 57899999944 34566777655432 457799999999987532 12 22333333 3458999
Q ss_pred CCCChhh
Q psy17085 121 RGNHECA 127 (826)
Q Consensus 121 rGNHE~~ 127 (826)
+||||..
T Consensus 77 ~GNHD~~ 83 (240)
T cd07402 77 PGNHDDR 83 (240)
T ss_pred CCCCCCH
Confidence 9999963
No 63
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=96.53 E-value=0.00087 Score=64.06 Aligned_cols=97 Identities=39% Similarity=0.682 Sum_probs=78.0
Q ss_pred hHhhhCChHHHHHHHhHH-HHHH---HHHHHhcCCcEEEECC-cEEEEeCCCCCCc-CCHHHHhhccCCC--CCCCCCcc
Q psy17085 129 INKVYGFYDECKRRYNVK-LWKT---FTECFNCMPVAAIVDE-KIFCCHGGLSPYL-SSIDQIRRISRPT--RVPEQGLL 200 (826)
Q Consensus 129 ~~~~~gf~~e~~~~~~~~-~~~~---~~~~f~~LPl~~~i~~-~il~vHgGi~~~~-~~l~~i~~i~r~~--~~~~~~~~ 200 (826)
++..+++.+++...+... .|.. ..++|+.+|+.+++++ .++|.|+++++.+ ..+++++.+.|.. .....+..
T Consensus 3 l~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~ 82 (155)
T COG0639 3 LTALYGFYDEKLRKYGEELEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDRLLDIIEVLDRLRACEVPHAGHT 82 (155)
T ss_pred hhhhhchhHHhhhhcCCceeeeeccchhhHHHhhhHHHHhcCCceeeecCCCCcchhhhHHHHHHHhhhhcccCCCcccc
Confidence 455677777766666543 4555 9999999999999988 9999999999976 6888888888776 66677888
Q ss_pred cccccCCcccc-hhchhcccceeeEE
Q psy17085 201 CDLLWSDPEKA-AESQLTIVRQVRFH 225 (826)
Q Consensus 201 ~dllWsdP~~~-~~~~~~~~RG~g~~ 225 (826)
.+.+|++|... ...|.+++||.+..
T Consensus 83 ~~~~~~~~~~~~~~~w~~~~~g~~~~ 108 (155)
T COG0639 83 HDLLWSDPDGGDRRIWNPGPRGVPRD 108 (155)
T ss_pred ccccCCCCCCCcccccccCCCCCCcc
Confidence 88899999863 57899999988876
No 64
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=96.52 E-value=0.0043 Score=66.34 Aligned_cols=68 Identities=18% Similarity=0.264 Sum_probs=44.5
Q ss_pred eeEEecCCCCHHHHHHHHHh---CCCCCCCcccccCcccCCCCCc-HHHH-------------HHHHHhhhccCCcEEEE
Q psy17085 58 LKICGDIHGQYLDLLMLFDY---GKYPPKSRYLFLGDYVDRGSNS-LETI-------------CLLLAYKIKYPGMFHLL 120 (826)
Q Consensus 58 i~viGDIHG~~~~L~~~l~~---~g~~~~~~~vflGD~VDrG~~s-~evl-------------~ll~~lk~~~p~~v~~l 120 (826)
|+|+||+||+++.+.+.++. -...+.|-+|.+||+-..+..+ .+.+ .++.. ....|--++.|
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g-~~~~p~~t~fi 79 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSG-EKKAPILTIFI 79 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcC-CccCCeeEEEE
Confidence 58999999999998764443 2234568899999996544332 2222 11111 22345567999
Q ss_pred CCCChh
Q psy17085 121 RGNHEC 126 (826)
Q Consensus 121 rGNHE~ 126 (826)
-||||.
T Consensus 80 ~GNHE~ 85 (262)
T cd00844 80 GGNHEA 85 (262)
T ss_pred CCCCCC
Confidence 999995
No 65
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=96.51 E-value=0.011 Score=60.40 Aligned_cols=70 Identities=11% Similarity=0.040 Sum_probs=43.0
Q ss_pred CCeeEEecCCCCHH------------HHHHHHHhCCCCCCCcccccCcccCCCCCc---HHHHHHHHHhhhccCCcEEEE
Q psy17085 56 TPLKICGDIHGQYL------------DLLMLFDYGKYPPKSRYLFLGDYVDRGSNS---LETICLLLAYKIKYPGMFHLL 120 (826)
Q Consensus 56 ~~i~viGDIHG~~~------------~L~~~l~~~g~~~~~~~vflGD~VDrG~~s---~evl~ll~~lk~~~p~~v~~l 120 (826)
.++.+++|+|--.. .+..+.+.......+.+|++||+++.+... .+.+..++.......-.++++
T Consensus 3 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~ 82 (199)
T cd07383 3 FKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAAT 82 (199)
T ss_pred eEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEE
Confidence 46899999996222 111221112223447799999999977653 455554444322223458899
Q ss_pred CCCCh
Q psy17085 121 RGNHE 125 (826)
Q Consensus 121 rGNHE 125 (826)
.||||
T Consensus 83 ~GNHD 87 (199)
T cd07383 83 FGNHD 87 (199)
T ss_pred CccCC
Confidence 99999
No 66
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=96.49 E-value=0.005 Score=61.57 Aligned_cols=56 Identities=18% Similarity=0.080 Sum_probs=32.4
Q ss_pred HHHHHhCCCCCCCcccccCcccCCCCCcH-HHHHHH-HHhhhccCCcEEEECCCChhh
Q psy17085 72 LMLFDYGKYPPKSRYLFLGDYVDRGSNSL-ETICLL-LAYKIKYPGMFHLLRGNHECA 127 (826)
Q Consensus 72 ~~~l~~~g~~~~~~~vflGD~VDrG~~s~-evl~ll-~~lk~~~p~~v~~lrGNHE~~ 127 (826)
.++.+.+...+.+.+|++||++|...... +....+ ..........+++++||||..
T Consensus 31 ~~l~~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 31 ERLDRLIEEYGPERLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred HHHHHHHHhcCCCEEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEEEcccCccc
Confidence 33333333334578999999998654332 222221 111223345799999999964
No 67
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=96.45 E-value=0.0038 Score=62.24 Aligned_cols=67 Identities=25% Similarity=0.335 Sum_probs=44.0
Q ss_pred eeEEecCCCCHHHH---------------HHHHHhCC--CCCCCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEE
Q psy17085 58 LKICGDIHGQYLDL---------------LMLFDYGK--YPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLL 120 (826)
Q Consensus 58 i~viGDIHG~~~~L---------------~~~l~~~g--~~~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~l 120 (826)
+++++|+|-..... ..+++.+. ..+.+.+|++||++++|..+.. +.++.++ +..++++
T Consensus 1 ~~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~~~~-~~~l~~~----~~~~~~v 75 (168)
T cd07390 1 IYFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKAGTE-LELLSRL----NGRKHLI 75 (168)
T ss_pred CeEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCChHHH-HHHHHhC----CCCeEEE
Confidence 36888998665532 22333221 2345889999999999986544 4444443 3459999
Q ss_pred CCCChhhhh
Q psy17085 121 RGNHECANI 129 (826)
Q Consensus 121 rGNHE~~~~ 129 (826)
+||||....
T Consensus 76 ~GNHD~~~~ 84 (168)
T cd07390 76 KGNHDSSLE 84 (168)
T ss_pred eCCCCchhh
Confidence 999996543
No 68
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=96.37 E-value=0.003 Score=65.34 Aligned_cols=69 Identities=23% Similarity=0.254 Sum_probs=38.2
Q ss_pred eEEecCC---CCHHH---HHHHHHhCCCCCCCcccccCcccCCC--C-----C-cHHHHHHHHHhhhccCCcEEEECCCC
Q psy17085 59 KICGDIH---GQYLD---LLMLFDYGKYPPKSRYLFLGDYVDRG--S-----N-SLETICLLLAYKIKYPGMFHLLRGNH 124 (826)
Q Consensus 59 ~viGDIH---G~~~~---L~~~l~~~g~~~~~~~vflGD~VDrG--~-----~-s~evl~ll~~lk~~~p~~v~~lrGNH 124 (826)
++|+|+| +...+ +..+++.......+.+|++||++|.- . . ..+.+..+..+. .....++.+.|||
T Consensus 1 ~~iSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~~v~GNH 79 (217)
T cd07398 1 LFISDLHLGDGGPAADFLLLFLLAALALGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLA-DRGTRVYYVPGNH 79 (217)
T ss_pred CEeeeecCCCCCCCHHHHHHHHHhhhccCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHH-HCCCeEEEECCCc
Confidence 4799999 22222 22222221113457899999999841 1 1 122223333332 2345799999999
Q ss_pred hhhh
Q psy17085 125 ECAN 128 (826)
Q Consensus 125 E~~~ 128 (826)
|...
T Consensus 80 D~~~ 83 (217)
T cd07398 80 DFLL 83 (217)
T ss_pred hHHH
Confidence 9753
No 69
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=96.36 E-value=0.0053 Score=66.27 Aligned_cols=70 Identities=14% Similarity=0.036 Sum_probs=46.7
Q ss_pred CCCeeEEecCC-C-----------CHHHHHHHHHhCCC--CCCCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEE
Q psy17085 55 GTPLKICGDIH-G-----------QYLDLLMLFDYGKY--PPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLL 120 (826)
Q Consensus 55 ~~~i~viGDIH-G-----------~~~~L~~~l~~~g~--~~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~l 120 (826)
.++++.++|+| . ....|.++++.+.- +..+-+|+.||++|.|. .+-+..+...-...+..++.+
T Consensus 14 ~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~--~~~~~~~~~~l~~l~~Pv~~v 91 (275)
T PRK11148 14 RVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS--SEAYQHFAEGIAPLRKPCVWL 91 (275)
T ss_pred CEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC--HHHHHHHHHHHhhcCCcEEEe
Confidence 46799999999 1 24567777776532 23477999999999874 333333333222334569999
Q ss_pred CCCChh
Q psy17085 121 RGNHEC 126 (826)
Q Consensus 121 rGNHE~ 126 (826)
.||||.
T Consensus 92 ~GNHD~ 97 (275)
T PRK11148 92 PGNHDF 97 (275)
T ss_pred CCCCCC
Confidence 999996
No 70
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=96.34 E-value=0.0055 Score=69.82 Aligned_cols=71 Identities=21% Similarity=0.277 Sum_probs=45.8
Q ss_pred CCeeEEecCC-CC-H------HH----HHHHHHhCCCCCCCcccccCcccCCCCCcHHHH----HHHHHhhhccCCcEEE
Q psy17085 56 TPLKICGDIH-GQ-Y------LD----LLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETI----CLLLAYKIKYPGMFHL 119 (826)
Q Consensus 56 ~~i~viGDIH-G~-~------~~----L~~~l~~~g~~~~~~~vflGD~VDrG~~s~evl----~ll~~lk~~~p~~v~~ 119 (826)
|+++.++|+| |. + .+ |..+.+.+.-...|.+|+.||++|++..+.+.. .++..++. .+-.+++
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~-~~~~v~~ 79 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQ-TGCQLVV 79 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHHh-cCCcEEE
Confidence 6789999999 32 1 11 233444333345688999999999986654433 23334442 2345999
Q ss_pred ECCCChhh
Q psy17085 120 LRGNHECA 127 (826)
Q Consensus 120 lrGNHE~~ 127 (826)
+.||||..
T Consensus 80 I~GNHD~~ 87 (407)
T PRK10966 80 LAGNHDSV 87 (407)
T ss_pred EcCCCCCh
Confidence 99999964
No 71
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=96.29 E-value=0.0054 Score=63.44 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=47.2
Q ss_pred CeeEEecCC-CCH--------------HHHHHHHHhCCCCCCCcccccCcccCCCCCcHHHHHHHHHhhhcc---CCcEE
Q psy17085 57 PLKICGDIH-GQY--------------LDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKY---PGMFH 118 (826)
Q Consensus 57 ~i~viGDIH-G~~--------------~~L~~~l~~~g~~~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~---p~~v~ 118 (826)
+++.++|+| |.. ..|.++++...-...+.+++.||++|....+.+.+..+...-... .-.++
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVF 80 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEE
Confidence 578899999 322 235566655444445779999999998776555444333322222 34689
Q ss_pred EECCCChhhhh
Q psy17085 119 LLRGNHECANI 129 (826)
Q Consensus 119 ~lrGNHE~~~~ 129 (826)
++.||||....
T Consensus 81 ~~~GNHD~~~~ 91 (223)
T cd00840 81 IIAGNHDSPSR 91 (223)
T ss_pred EecCCCCCccc
Confidence 99999997543
No 72
>PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans.
Probab=96.27 E-value=0.025 Score=61.14 Aligned_cols=118 Identities=13% Similarity=0.033 Sum_probs=77.6
Q ss_pred cccCCceEEEEeCcccccCcceeeeecCCCcccccCCCCCEEEEEecCcccCCCCCCcCceEEEEeccChhhhhcccccc
Q psy17085 258 AEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKFPGMSLQILQWFVDSY 337 (826)
Q Consensus 258 ~~~~nDIALLkL~~pv~~~~~V~PIcLp~~~~~~~~~~g~~c~vsGWG~t~~~~~~s~~Lq~v~v~vis~~~C~~~~~~~ 337 (826)
....++.+||+|.++ ++....|+|||... .....+....+.|+ .....+....+.+.....|..
T Consensus 157 ~~~~~~~mIlEl~~~--~~~~~~~~Cl~~~~--~~~~~~~~~~~yg~-------~~~~~~~~~~~~i~~~~~~~~----- 220 (282)
T PF03761_consen 157 FNRPYSPMILELEED--FSKNVSPPCLADSS--TNWEKGDEVDVYGF-------NSTGKLKHRKLKITNCTKCAY----- 220 (282)
T ss_pred cccccceEEEEEccc--ccccCCCEEeCCCc--cccccCceEEEeec-------CCCCeEEEEEEEEEEeeccce-----
Confidence 345678999999999 78899999999765 22334555666665 112334444444443322220
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEeECCeEEEEEEEEecCCCCCCCCCCeEEEECcccHHH
Q psy17085 338 HSIHLENYATEAAISNANNTLKFPGMSLQILQWFVDSYKLNSSLGAVAPTPKPQSGLFVYGVKFLQWLYW 407 (826)
Q Consensus 338 ~~~~i~~~~~~~~~~~~~~~~g~~Gdsggpl~~~~~~~~~l~GIvS~g~~~c~~~~~P~VyTrVs~Y~dW 407 (826)
..+ .....|.|++||++....++++.+.|+.+.+...|... ...|.+|+.|.+=
T Consensus 221 ------------~~~--~~~~~~~~d~Gg~lv~~~~gr~tlIGv~~~~~~~~~~~--~~~f~~v~~~~~~ 274 (282)
T PF03761_consen 221 ------------SIC--TKQYSCKGDRGGPLVKNINGRWTLIGVGASGNYECNKN--NSYFFNVSWYQDE 274 (282)
T ss_pred ------------eEe--cccccCCCCccCeEEEEECCCEEEEEEEccCCCccccc--ccEEEEHHHhhhh
Confidence 011 11256789999999999999999999998775445322 6788888877653
No 73
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.22 E-value=0.0093 Score=62.39 Aligned_cols=69 Identities=16% Similarity=0.089 Sum_probs=43.4
Q ss_pred CCeeEEecCC-CCHHHH----------------HHHHHhCCCCCCCcccccCcccCCCCCc---HHHHHHHHHhhhccCC
Q psy17085 56 TPLKICGDIH-GQYLDL----------------LMLFDYGKYPPKSRYLFLGDYVDRGSNS---LETICLLLAYKIKYPG 115 (826)
Q Consensus 56 ~~i~viGDIH-G~~~~L----------------~~~l~~~g~~~~~~~vflGD~VDrG~~s---~evl~ll~~lk~~~p~ 115 (826)
.++.||+|+| |--..+ .++.+.......+.+|++||+.+..... .++.+++..+. .
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~~----~ 90 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKGLEWRFIREFIEVTF----R 90 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCChHHHHHHHHHHHhcC----C
Confidence 5789999999 543322 2232322333457899999999765542 23333444432 3
Q ss_pred cEEEECCCChhhh
Q psy17085 116 MFHLLRGNHECAN 128 (826)
Q Consensus 116 ~v~~lrGNHE~~~ 128 (826)
.+++++||||...
T Consensus 91 ~v~~V~GNHD~~~ 103 (225)
T TIGR00024 91 DLILIRGNHDALI 103 (225)
T ss_pred cEEEECCCCCCcc
Confidence 6999999999643
No 74
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=96.11 E-value=0.0079 Score=62.44 Aligned_cols=69 Identities=23% Similarity=0.182 Sum_probs=41.4
Q ss_pred CeeEEecCCCC----HHHH----HHHHHhCCCCCCCcccccCcccCCCCCcH--HH-HHHHHHhhhccCCcEEEECCCCh
Q psy17085 57 PLKICGDIHGQ----YLDL----LMLFDYGKYPPKSRYLFLGDYVDRGSNSL--ET-ICLLLAYKIKYPGMFHLLRGNHE 125 (826)
Q Consensus 57 ~i~viGDIHG~----~~~L----~~~l~~~g~~~~~~~vflGD~VDrG~~s~--ev-l~ll~~lk~~~p~~v~~lrGNHE 125 (826)
+++++||+|-- ...+ ..+.+...-..-+.++++||++|.|.... +. ...+..+.. .+--++.++||||
T Consensus 2 ~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~-~~~p~~~~~GNHD 80 (214)
T cd07399 2 TLAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDK-AGIPYSVLAGNHD 80 (214)
T ss_pred EEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHH-cCCcEEEECCCCc
Confidence 57899999952 2223 23334333333477899999999988432 22 223333321 1234889999999
Q ss_pred h
Q psy17085 126 C 126 (826)
Q Consensus 126 ~ 126 (826)
.
T Consensus 81 ~ 81 (214)
T cd07399 81 L 81 (214)
T ss_pred c
Confidence 4
No 75
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=96.01 E-value=0.0073 Score=59.48 Aligned_cols=46 Identities=24% Similarity=0.230 Sum_probs=28.9
Q ss_pred CCCcccccCcccCCCCCc-HHH----HHHHHHhhhcc-CCcEEEECCCChhh
Q psy17085 82 PKSRYLFLGDYVDRGSNS-LET----ICLLLAYKIKY-PGMFHLLRGNHECA 127 (826)
Q Consensus 82 ~~~~~vflGD~VDrG~~s-~ev----l~ll~~lk~~~-p~~v~~lrGNHE~~ 127 (826)
..+.++++||++|.+... .+. +..+..+.... ...++++.||||..
T Consensus 38 ~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 38 QPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIG 89 (156)
T ss_pred CCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcC
Confidence 357899999999987642 222 22222222111 24699999999964
No 76
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=95.82 E-value=0.014 Score=61.49 Aligned_cols=65 Identities=22% Similarity=0.226 Sum_probs=39.9
Q ss_pred eeEEecCCCC---------HH----HH-HHHHHhCC--CCCCCcccccCcccCCCCCc--HHHHHHHHHhhhccCCcEEE
Q psy17085 58 LKICGDIHGQ---------YL----DL-LMLFDYGK--YPPKSRYLFLGDYVDRGSNS--LETICLLLAYKIKYPGMFHL 119 (826)
Q Consensus 58 i~viGDIHG~---------~~----~L-~~~l~~~g--~~~~~~~vflGD~VDrG~~s--~evl~ll~~lk~~~p~~v~~ 119 (826)
+++++|+|-. +. ++ .++.+.+. .++.|.+|+.||+++++... .+.+.+|.++ |..+++
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~~~~~~~l~~l~~l----~~~v~~ 76 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKLEEAKLDLAWIDAL----PGTKVL 76 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCChHHHHHHHHHHHhC----CCCeEE
Confidence 5789999955 21 22 22332211 23568899999999887532 2333334332 334899
Q ss_pred ECCCChh
Q psy17085 120 LRGNHEC 126 (826)
Q Consensus 120 lrGNHE~ 126 (826)
+.||||.
T Consensus 77 V~GNHD~ 83 (232)
T cd07393 77 LKGNHDY 83 (232)
T ss_pred EeCCccc
Confidence 9999996
No 77
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=95.81 E-value=0.016 Score=65.83 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=42.4
Q ss_pred CCCeeEEecCCCC------------HHHHHHHHHhCCCCCCCcccccCcccCCCCCcHHHHHHHHH
Q psy17085 55 GTPLKICGDIHGQ------------YLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLA 108 (826)
Q Consensus 55 ~~~i~viGDIHG~------------~~~L~~~l~~~g~~~~~~~vflGD~VDrG~~s~evl~ll~~ 108 (826)
.+++.+++|+|-- +..|.++++.+.-..-|-+++.||+.|++.-|.+++..++.
T Consensus 3 ~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~~Ps~~~~~~~~~ 68 (405)
T TIGR00583 3 TIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHENKPSRKSLYQVLR 68 (405)
T ss_pred ceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHH
Confidence 4689999999942 55777888777655668899999999999999888755443
No 78
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.72 E-value=0.032 Score=57.84 Aligned_cols=98 Identities=18% Similarity=0.288 Sum_probs=58.0
Q ss_pred EEecCCCC------HHHHHHHHHhCCCCCCCcccccCcccCC--CCC-----cHHHHHHHHHhhhccCCcEEEECCCChh
Q psy17085 60 ICGDIHGQ------YLDLLMLFDYGKYPPKSRYLFLGDYVDR--GSN-----SLETICLLLAYKIKYPGMFHLLRGNHEC 126 (826)
Q Consensus 60 viGDIHG~------~~~L~~~l~~~g~~~~~~~vflGD~VDr--G~~-----s~evl~ll~~lk~~~p~~v~~lrGNHE~ 126 (826)
+|+|+|=. .+-|.++++... +..+.++++||++|- |.+ --+|...|..+. ....+++.+.||||.
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~~a-~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a-~~G~~v~~i~GN~Df 79 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLREEA-AQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLA-RKGTRVYYIHGNHDF 79 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHhcc-ccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHH-hcCCeEEEecCchHH
Confidence 68899854 334455555433 356789999999972 333 234555554433 345789999999994
Q ss_pred hhhHhhhCChHHHHHHHhHHHHHHHHHHHhcCCcEEEE---CCcEEEEeCCC
Q psy17085 127 ANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIV---DEKIFCCHGGL 175 (826)
Q Consensus 127 ~~~~~~~gf~~e~~~~~~~~~~~~~~~~f~~LPl~~~i---~~~il~vHgGi 175 (826)
. +...++ .-..-+.-+|-..++ +.+++++||..
T Consensus 80 l-l~~~f~---------------~~~g~~~l~~~~~~~~l~g~~~Ll~HGD~ 115 (237)
T COG2908 80 L-LGKRFA---------------QEAGGMTLLPDPIVLDLYGKRILLAHGDT 115 (237)
T ss_pred H-HHHHHH---------------hhcCceEEcCcceeeeecCcEEEEEeCCc
Confidence 3 332211 111113344544444 56899999975
No 79
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=95.61 E-value=0.027 Score=60.62 Aligned_cols=74 Identities=19% Similarity=0.165 Sum_probs=52.9
Q ss_pred CCeeEEecCCCC------HHHHHHHHHhCCCCCCCcccccCcccCCCCCcHHHHHHHHHhhh--ccCCcEEEECCCChhh
Q psy17085 56 TPLKICGDIHGQ------YLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKI--KYPGMFHLLRGNHECA 127 (826)
Q Consensus 56 ~~i~viGDIHG~------~~~L~~~l~~~g~~~~~~~vflGD~VDrG~~s~evl~ll~~lk~--~~p~~v~~lrGNHE~~ 127 (826)
++++.|+|+|-. ...+..+++.+...+.|.+|+.||+.+.|. .+-+..+..+-. ..+..++.++||||..
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~~--~~~~~~~~~~l~~~~~~~~~~~vpGNHD~~ 78 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTNDGE--PEEYRRLKELLARLELPAPVIVVPGNHDAR 78 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHhcCCCCEEEEccCcCCCCC--HHHHHHHHHHHhhccCCCceEeeCCCCcCC
Confidence 468899999987 345566677777666699999999999963 333333333322 5567799999999987
Q ss_pred hhHh
Q psy17085 128 NINK 131 (826)
Q Consensus 128 ~~~~ 131 (826)
..+.
T Consensus 79 ~~~~ 82 (301)
T COG1409 79 VVNG 82 (301)
T ss_pred chHH
Confidence 6554
No 80
>KOG0376|consensus
Probab=95.54 E-value=0.007 Score=68.06 Aligned_cols=114 Identities=15% Similarity=0.055 Sum_probs=97.1
Q ss_pred ccCCHHHHHHHHHHHHHHHhcCCCceeeCC----CeeEEecCCCCHHHHHHHHHhCCCCCC-CcccccCcccCCCCCcHH
Q psy17085 27 VNLHESEISALCRVSREIFLSEPMLLELGT----PLKICGDIHGQYLDLLMLFDYGKYPPK-SRYLFLGDYVDRGSNSLE 101 (826)
Q Consensus 27 ~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~----~i~viGDIHG~~~~L~~~l~~~g~~~~-~~~vflGD~VDrG~~s~e 101 (826)
..|...++..+++-+.+.+..+|+...... -.+.++|.||.+.|+...++.- |.. .-|++-|++++++....+
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHHH
Confidence 447778889999999999999998877643 4889999999999999988854 333 349999999999999999
Q ss_pred HHHHHHHhhhccCCcEEEECCCChhhhhHhhhCChHHHHHH
Q psy17085 102 TICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRR 142 (826)
Q Consensus 102 vl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~gf~~e~~~~ 142 (826)
.+..+...+...|++..+.|++||+..+-..++|..+....
T Consensus 91 A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~ 131 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTP 131 (476)
T ss_pred HHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 99999999999999999999999999888888877554333
No 81
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=95.14 E-value=0.033 Score=59.48 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=40.7
Q ss_pred eeEEecCCCCHH------HH-HHHHHhCCCCCCCcccccCcccCCCCCc-------H----HHHHHHHHhhhccCCcEEE
Q psy17085 58 LKICGDIHGQYL------DL-LMLFDYGKYPPKSRYLFLGDYVDRGSNS-------L----ETICLLLAYKIKYPGMFHL 119 (826)
Q Consensus 58 i~viGDIHG~~~------~L-~~~l~~~g~~~~~~~vflGD~VDrG~~s-------~----evl~ll~~lk~~~p~~v~~ 119 (826)
++.++|+|-... .. ..+++.+.....+.+|++||++|++... . +.+..+..+....+..++.
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 81 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKWFD 81 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceEEE
Confidence 467899996222 12 2234434333456899999999986521 1 1222222222222456899
Q ss_pred ECCCChhh
Q psy17085 120 LRGNHECA 127 (826)
Q Consensus 120 lrGNHE~~ 127 (826)
++||||..
T Consensus 82 v~GNHD~~ 89 (256)
T cd07401 82 IRGNHDLF 89 (256)
T ss_pred eCCCCCcC
Confidence 99999984
No 82
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=94.82 E-value=0.062 Score=53.75 Aligned_cols=47 Identities=23% Similarity=0.202 Sum_probs=29.8
Q ss_pred CCCcccccCcccCCCCCcH--H---HHHHHHHhhh-c----cCCcEEEECCCChhhh
Q psy17085 82 PKSRYLFLGDYVDRGSNSL--E---TICLLLAYKI-K----YPGMFHLLRGNHECAN 128 (826)
Q Consensus 82 ~~~~~vflGD~VDrG~~s~--e---vl~ll~~lk~-~----~p~~v~~lrGNHE~~~ 128 (826)
..+.+|++||++|.+.... + .+..+..+.. . ....++.+.||||...
T Consensus 45 ~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 45 KPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred CCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence 3578999999999887432 2 2322223211 1 1346999999999753
No 83
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=94.81 E-value=0.033 Score=58.99 Aligned_cols=67 Identities=16% Similarity=0.119 Sum_probs=38.9
Q ss_pred eEEecCC--CCH---HHHHHHHHhC-CCC----CCCcccccCcccCCCCC------------c----HHHHHHHHHhhhc
Q psy17085 59 KICGDIH--GQY---LDLLMLFDYG-KYP----PKSRYLFLGDYVDRGSN------------S----LETICLLLAYKIK 112 (826)
Q Consensus 59 ~viGDIH--G~~---~~L~~~l~~~-g~~----~~~~~vflGD~VDrG~~------------s----~evl~ll~~lk~~ 112 (826)
++++|+| +.. ..+..+++.+ +.. .-+.+|++||++|+... . .++..++..+..
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~- 80 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPS- 80 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhccc-
Confidence 6799999 332 2223333322 221 23779999999997310 0 123334444432
Q ss_pred cCCcEEEECCCChhh
Q psy17085 113 YPGMFHLLRGNHECA 127 (826)
Q Consensus 113 ~p~~v~~lrGNHE~~ 127 (826)
.-.|+++.||||..
T Consensus 81 -~~~v~~ipGNHD~~ 94 (243)
T cd07386 81 -HIKIIIIPGNHDAV 94 (243)
T ss_pred -CCeEEEeCCCCCcc
Confidence 34699999999974
No 84
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=94.80 E-value=0.046 Score=59.32 Aligned_cols=68 Identities=16% Similarity=0.126 Sum_probs=40.7
Q ss_pred CeeEEecCCC----CHHHHHHHHHhCCCCCCCcccccCcccCCCCCc----H-HHHHHHHHhhhccCCcEEEECCCChhh
Q psy17085 57 PLKICGDIHG----QYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNS----L-ETICLLLAYKIKYPGMFHLLRGNHECA 127 (826)
Q Consensus 57 ~i~viGDIHG----~~~~L~~~l~~~g~~~~~~~vflGD~VDrG~~s----~-evl~ll~~lk~~~p~~v~~lrGNHE~~ 127 (826)
+++|+||.|. ....+..+.+. ....+-++++||+++.+... . +....+..+.... -++.++||||..
T Consensus 6 ~f~v~gD~~~~~~~~~~~~~~l~~~--~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~--P~~~~~GNHD~~ 81 (294)
T cd00839 6 KFAVFGDMGQNTNNSTNTLDHLEKE--LGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLASYV--PYMVTPGNHEAD 81 (294)
T ss_pred EEEEEEECCCCCCCcHHHHHHHHhc--cCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHHhcC--CcEEcCcccccc
Confidence 6899999995 33333444433 23346788999999544322 1 2223333332233 388999999975
Q ss_pred h
Q psy17085 128 N 128 (826)
Q Consensus 128 ~ 128 (826)
.
T Consensus 82 ~ 82 (294)
T cd00839 82 Y 82 (294)
T ss_pred c
Confidence 3
No 85
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=94.79 E-value=0.052 Score=57.99 Aligned_cols=71 Identities=13% Similarity=-0.022 Sum_probs=42.7
Q ss_pred CeeEEecCCCCH----------------HHHHHHHHhCCC--CCCCcccccCcccCCCCCcH---HHHHHHHH-hhhc-c
Q psy17085 57 PLKICGDIHGQY----------------LDLLMLFDYGKY--PPKSRYLFLGDYVDRGSNSL---ETICLLLA-YKIK-Y 113 (826)
Q Consensus 57 ~i~viGDIHG~~----------------~~L~~~l~~~g~--~~~~~~vflGD~VDrG~~s~---evl~ll~~-lk~~-~ 113 (826)
.+++++|+|--. ..|.++++.+.. +..+.++++||+++.|...- +-...+.. ++.. .
T Consensus 6 ~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (262)
T cd07395 6 YFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSLLDP 85 (262)
T ss_pred EEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhhccC
Confidence 467888888664 134555555432 24467889999999886541 11222211 2211 1
Q ss_pred CCcEEEECCCChhh
Q psy17085 114 PGMFHLLRGNHECA 127 (826)
Q Consensus 114 p~~v~~lrGNHE~~ 127 (826)
+-.++.+.||||..
T Consensus 86 ~vp~~~i~GNHD~~ 99 (262)
T cd07395 86 DIPLVCVCGNHDVG 99 (262)
T ss_pred CCcEEEeCCCCCCC
Confidence 24599999999974
No 86
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=94.65 E-value=0.069 Score=54.91 Aligned_cols=74 Identities=19% Similarity=0.161 Sum_probs=55.0
Q ss_pred CCCeeEEecCCCCHHHHHHHHHhCCCCCCCcccccCccc--CCCCCcHHHHHH--HHHhhhccCCcEEEECCCChhhhhH
Q psy17085 55 GTPLKICGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYV--DRGSNSLETICL--LLAYKIKYPGMFHLLRGNHECANIN 130 (826)
Q Consensus 55 ~~~i~viGDIHG~~~~L~~~l~~~g~~~~~~~vflGD~V--DrG~~s~evl~l--l~~lk~~~p~~v~~lrGNHE~~~~~ 130 (826)
.|++..+.|+||.++.+.++++...--..|-+++.||+. +.|+.-. +..+ +..++ .+...|+.+.||.|...+-
T Consensus 3 ~mkil~vtDlHg~~~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~-~~~~~~~e~l~-~~~~~v~avpGNcD~~~v~ 80 (226)
T COG2129 3 KMKILAVTDLHGSEDSLKKLLNAAADIRADLLVIAGDLTYFHFGPKEV-AEELNKLEALK-ELGIPVLAVPGNCDPPEVI 80 (226)
T ss_pred cceEEEEeccccchHHHHHHHHHHhhccCCEEEEecceehhhcCchHH-HHhhhHHHHHH-hcCCeEEEEcCCCChHHHH
Confidence 578999999999999999999887755668899999999 8876432 2222 33333 2235699999999876554
No 87
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=94.52 E-value=0.071 Score=51.36 Aligned_cols=67 Identities=19% Similarity=0.185 Sum_probs=41.9
Q ss_pred eeEEecCCCC------------HHHHHH-HHHhC--CCCCCCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECC
Q psy17085 58 LKICGDIHGQ------------YLDLLM-LFDYG--KYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRG 122 (826)
Q Consensus 58 i~viGDIHG~------------~~~L~~-~l~~~--g~~~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrG 122 (826)
++++||.|-. .+.... ++... -..|+|.+++|||+.-.--.-.+..+.+-.| ++++++++|
T Consensus 6 myfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~~~~a~~IlerL----nGrkhlv~G 81 (186)
T COG4186 6 MYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANRERAAGLILERL----NGRKHLVPG 81 (186)
T ss_pred EEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccchhhHHHHHHHHc----CCcEEEeeC
Confidence 7888998853 233322 22211 1346788999999986544444444444444 478999999
Q ss_pred CChhhh
Q psy17085 123 NHECAN 128 (826)
Q Consensus 123 NHE~~~ 128 (826)
|||-..
T Consensus 82 NhDk~~ 87 (186)
T COG4186 82 NHDKCH 87 (186)
T ss_pred CCCCCc
Confidence 998643
No 88
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=94.35 E-value=0.058 Score=58.41 Aligned_cols=69 Identities=20% Similarity=0.176 Sum_probs=46.7
Q ss_pred CeeEEecCCCCHHH--HHHHHHhCCCCCCCcccccCcccCC-CCCc-HHHHHHHHHhhhccCCcEEEECCCChhh
Q psy17085 57 PLKICGDIHGQYLD--LLMLFDYGKYPPKSRYLFLGDYVDR-GSNS-LETICLLLAYKIKYPGMFHLLRGNHECA 127 (826)
Q Consensus 57 ~i~viGDIHG~~~~--L~~~l~~~g~~~~~~~vflGD~VDr-G~~s-~evl~ll~~lk~~~p~~v~~lrGNHE~~ 127 (826)
+++-++|+|-.... ..+.+........|-+++.|||+|+ .+.+ -.++..|..|+.. -.+|++-||||..
T Consensus 46 ~iv~lSDlH~~~~~~~~~~~~~~i~~~~~DlivltGD~~~~~~~~~~~~~~~~L~~L~~~--~gv~av~GNHd~~ 118 (284)
T COG1408 46 KIVQLSDLHSLPFREEKLALLIAIANELPDLIVLTGDYVDGDRPPGVAALALFLAKLKAP--LGVFAVLGNHDYG 118 (284)
T ss_pred EEEEeehhhhchhhHHHHHHHHHHHhcCCCEEEEEeeeecCCCCCCHHHHHHHHHhhhcc--CCEEEEecccccc
Confidence 58999999988766 1222222222223889999999995 5444 4555666666644 5699999999854
No 89
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=94.28 E-value=0.093 Score=53.43 Aligned_cols=46 Identities=22% Similarity=0.335 Sum_probs=33.2
Q ss_pred CCCcccccCcccCCCCCc--HHHHHHHHHhhhccC----CcEEEECCCChhh
Q psy17085 82 PKSRYLFLGDYVDRGSNS--LETICLLLAYKIKYP----GMFHLLRGNHECA 127 (826)
Q Consensus 82 ~~~~~vflGD~VDrG~~s--~evl~ll~~lk~~~p----~~v~~lrGNHE~~ 127 (826)
..+.++|+||++|.|+.+ .|..+.+..++..+. -.++.+.||||..
T Consensus 42 ~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG 93 (195)
T cd08166 42 QPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIG 93 (195)
T ss_pred CCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcC
Confidence 347799999999999854 346666666554322 4688999999954
No 90
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=94.26 E-value=0.072 Score=52.09 Aligned_cols=66 Identities=23% Similarity=0.312 Sum_probs=48.5
Q ss_pred eEEecCCCCHHHHHHHHHhCCC--CCCCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCCh
Q psy17085 59 KICGDIHGQYLDLLMLFDYGKY--PPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHE 125 (826)
Q Consensus 59 ~viGDIHG~~~~L~~~l~~~g~--~~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE 125 (826)
.|+||+||+++.+.+-++.... .+-|-++++||+..-....-+.-.++.. ....|--.+.+-||||
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~~~~~~y~~g-~~~~pipTyf~ggn~~ 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKKKGPFDALLCVGDFFGDDEDDEELEAYKDG-SKKVPIPTYFLGGNNP 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcccCCeeEEEEecCccCCccchhhHHHHhcC-CccCCCCEEEECCCCC
Confidence 4899999999999877765322 2457799999999866655444444433 4466777999999998
No 91
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=93.50 E-value=0.087 Score=55.86 Aligned_cols=65 Identities=26% Similarity=0.282 Sum_probs=43.4
Q ss_pred CeeEEecCCCCH---------HHHHHHHHhCCCC-CCCcccccCcccCCCCCcH-----HHHHHHHHhhhccCCcEEEEC
Q psy17085 57 PLKICGDIHGQY---------LDLLMLFDYGKYP-PKSRYLFLGDYVDRGSNSL-----ETICLLLAYKIKYPGMFHLLR 121 (826)
Q Consensus 57 ~i~viGDIHG~~---------~~L~~~l~~~g~~-~~~~~vflGD~VDrG~~s~-----evl~ll~~lk~~~p~~v~~lr 121 (826)
+++.++|+||.+ ..+.+++++..-. ++..++..||+++.+..+. .++..+.++. ..+ +..
T Consensus 2 ~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~g----~d~-~~~ 76 (252)
T cd00845 2 TILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMNALG----YDA-VTI 76 (252)
T ss_pred EEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchhccCCcHHHHHHHhcC----CCE-Eee
Confidence 578899999887 5566666665443 3345677999999877643 4555554443 223 456
Q ss_pred CCChh
Q psy17085 122 GNHEC 126 (826)
Q Consensus 122 GNHE~ 126 (826)
||||.
T Consensus 77 GNHe~ 81 (252)
T cd00845 77 GNHEF 81 (252)
T ss_pred ccccc
Confidence 99995
No 92
>PF09342 DUF1986: Domain of unknown function (DUF1986); InterPro: IPR015420 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found in serine endopeptidases belonging to MEROPS peptidase family S1A (clan PA). It is found in unusual mosaic proteins, which are encoded by the Drosophila nudel gene (see P98159 from SWISSPROT). Nudel is involved in defining embryonic dorsoventral polarity. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Nudel, pipe and windbeutel together trigger the protease cascade within the extraembryonic perivitelline compartment which induces dorsoventral polarity of the Drosophila embryo [].
Probab=92.84 E-value=0.52 Score=48.97 Aligned_cols=72 Identities=18% Similarity=0.249 Sum_probs=48.2
Q ss_pred EEEEEEcceeccccc---ccccccccccccCCcCCccccCCceEEEEeCcccccCcceeeeecCCCcccccCCCCCEEEE
Q psy17085 225 HAEVKLGAHYLSSQL---NNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATV 301 (826)
Q Consensus 225 ~l~V~~G~~~~~~~~---~~~~~~V~~ii~HP~Y~~~~~~nDIALLkL~~pv~~~~~V~PIcLp~~~~~~~~~~g~~c~v 301 (826)
++.|.+|........ .+|.+.|..+. .-.+.+++||.|++|+.|+.+|+|..||... .+......|..
T Consensus 56 YvsallG~~Kt~~~v~Gp~EQI~rVD~~~-------~V~~S~v~LLHL~~~~~fTr~VlP~flp~~~--~~~~~~~~CVA 126 (267)
T PF09342_consen 56 YVSALLGGGKTYLSVDGPHEQISRVDCFK-------DVPESNVLLLHLEQPANFTRYVLPTFLPETS--NENESDDECVA 126 (267)
T ss_pred eEEEEecCcceecccCCChheEEEeeeee-------eccccceeeeeecCcccceeeeccccccccc--CCCCCCCceEE
Confidence 346667776643221 23555555432 2346789999999999999999999999633 22334558998
Q ss_pred EecC
Q psy17085 302 AGWG 305 (826)
Q Consensus 302 sGWG 305 (826)
.|--
T Consensus 127 Vg~d 130 (267)
T PF09342_consen 127 VGHD 130 (267)
T ss_pred EEcc
Confidence 8843
No 93
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=92.19 E-value=0.28 Score=51.14 Aligned_cols=101 Identities=21% Similarity=0.199 Sum_probs=60.8
Q ss_pred eCCCeeEEecCCCCHHHHH----------------HHHHh-CCCCCCCcccccCcccCCCCC-----cHHHHHHHHHhhh
Q psy17085 54 LGTPLKICGDIHGQYLDLL----------------MLFDY-GKYPPKSRYLFLGDYVDRGSN-----SLETICLLLAYKI 111 (826)
Q Consensus 54 ~~~~i~viGDIHG~~~~L~----------------~~l~~-~g~~~~~~~vflGD~VDrG~~-----s~evl~ll~~lk~ 111 (826)
...+..|+.|+|=-++..+ +.++. ...-..+++|.+||+-.-.+. ..|+-.++..+..
T Consensus 18 ~~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~ 97 (235)
T COG1407 18 PLGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDE 97 (235)
T ss_pred ccCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhcc
Confidence 3568999999996555433 22221 111224679999999865544 2445555544443
Q ss_pred ccCCcEEEECCCChhhhhHhhhCChHHHHHHHhHHHHHHHHHHHhcCCcEEEECCcEEEEeCCCCC
Q psy17085 112 KYPGMFHLLRGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSP 177 (826)
Q Consensus 112 ~~p~~v~~lrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~f~~LPl~~~i~~~il~vHgGi~~ 177 (826)
. .+++++||||...-....++. .+ .++... .++++++||---+
T Consensus 98 ~---evi~i~GNHD~~i~~~~~~~~---------------v~---v~~~~~--i~~~~~~HGh~~~ 140 (235)
T COG1407 98 R---EVIIIRGNHDNGIEEILPGFN---------------VE---VVDELE--IGGLLFRHGHKEP 140 (235)
T ss_pred C---cEEEEeccCCCccccccccCC---------------ce---eeeeEE--ecCEEEEeCCCCC
Confidence 3 499999999976554444431 11 122222 3689999997544
No 94
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=90.97 E-value=0.59 Score=50.00 Aligned_cols=77 Identities=21% Similarity=0.308 Sum_probs=40.5
Q ss_pred CCcccccCcccCCCCCcH-----HHHHH-HHHhhhcc-CCcEEEECCCChhhhhHhhhCChHHHHHHHhHHHHHHHHHHH
Q psy17085 83 KSRYLFLGDYVDRGSNSL-----ETICL-LLAYKIKY-PGMFHLLRGNHECANINKVYGFYDECKRRYNVKLWKTFTECF 155 (826)
Q Consensus 83 ~~~~vflGD~VDrG~~s~-----evl~l-l~~lk~~~-p~~v~~lrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~f 155 (826)
-+.++|+||++|.|.... +-+.. ...+.... ...++.|.||||.. +.... .....+.|.++|
T Consensus 46 PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig-------~~~~~----~~~~~~rf~~~F 114 (257)
T cd08163 46 PDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIG-------FGNGV----VLPVRQRFEKYF 114 (257)
T ss_pred CCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccC-------CCCCC----CHHHHHHHHHHh
Confidence 477999999999997531 11221 11111110 12488999999952 21110 112346667777
Q ss_pred hcCCcEEEECCcEEE
Q psy17085 156 NCMPVAAIVDEKIFC 170 (826)
Q Consensus 156 ~~LPl~~~i~~~il~ 170 (826)
........+++--|+
T Consensus 115 g~~~~~~~~~~~~fV 129 (257)
T cd08163 115 GPTSRVIDVGNHTFV 129 (257)
T ss_pred CCCceEEEECCEEEE
Confidence 654444444443333
No 95
>PLN02533 probable purple acid phosphatase
Probab=90.82 E-value=0.23 Score=57.15 Aligned_cols=71 Identities=14% Similarity=0.107 Sum_probs=40.4
Q ss_pred CCCeeEEecCCCCHHHHHHHHHhCCCCCCCcccccCcccCCCCCcH--H-HHHHHHHhhhccCCcEEEECCCChhhh
Q psy17085 55 GTPLKICGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSL--E-TICLLLAYKIKYPGMFHLLRGNHECAN 128 (826)
Q Consensus 55 ~~~i~viGDIHG~~~~L~~~l~~~g~~~~~~~vflGD~VDrG~~s~--e-vl~ll~~lk~~~p~~v~~lrGNHE~~~ 128 (826)
.-+++++||+|-. ......++.+....-+-++++||+++-+.+.- + -.+++..+....| ++.+.||||...
T Consensus 139 ~~~f~v~GDlG~~-~~~~~tl~~i~~~~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s~~P--~m~~~GNHE~~~ 212 (427)
T PLN02533 139 PIKFAVSGDLGTS-EWTKSTLEHVSKWDYDVFILPGDLSYANFYQPLWDTFGRLVQPLASQRP--WMVTHGNHELEK 212 (427)
T ss_pred CeEEEEEEeCCCC-cccHHHHHHHHhcCCCEEEEcCccccccchHHHHHHHHHHhhhHhhcCc--eEEeCccccccc
Confidence 3468999999632 11223333333334567889999997543321 1 2223333332333 778999999753
No 96
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=90.62 E-value=0.44 Score=54.15 Aligned_cols=74 Identities=19% Similarity=0.142 Sum_probs=49.0
Q ss_pred CCeeEEecCCCC-------------HHHHHHHHHhCCCCCCCcccccCcccCCCCCcHHHHHHHHHh-hhcc--CCcEEE
Q psy17085 56 TPLKICGDIHGQ-------------YLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAY-KIKY--PGMFHL 119 (826)
Q Consensus 56 ~~i~viGDIHG~-------------~~~L~~~l~~~g~~~~~~~vflGD~VDrG~~s~evl~ll~~l-k~~~--p~~v~~ 119 (826)
|++...+|.|=- +.+|..+++.+.-..-|-+|+-||+.|++.-|.+++..+... +... .--||+
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~ 80 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVV 80 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEE
Confidence 577888888843 223344444433334478999999999998888876655443 2221 125999
Q ss_pred ECCCChhhhh
Q psy17085 120 LRGNHECANI 129 (826)
Q Consensus 120 lrGNHE~~~~ 129 (826)
|.||||...-
T Consensus 81 I~GNHD~~~~ 90 (390)
T COG0420 81 IAGNHDSPSR 90 (390)
T ss_pred ecCCCCchhc
Confidence 9999997643
No 97
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=90.50 E-value=0.27 Score=53.08 Aligned_cols=65 Identities=22% Similarity=0.212 Sum_probs=38.9
Q ss_pred CeeEEecCCCCHH----------------HHHHHHHhCCCCCCCccc-ccCcccCCCCCc-----------HHHHHHHHH
Q psy17085 57 PLKICGDIHGQYL----------------DLLMLFDYGKYPPKSRYL-FLGDYVDRGSNS-----------LETICLLLA 108 (826)
Q Consensus 57 ~i~viGDIHG~~~----------------~L~~~l~~~g~~~~~~~v-flGD~VDrG~~s-----------~evl~ll~~ 108 (826)
.++..+|+||++. .+..++++..-...+.++ ..||+++..+.+ ..++..+..
T Consensus 2 ~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~ln~ 81 (277)
T cd07410 2 RILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAAMNA 81 (277)
T ss_pred eEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHHHHHhhhcccCCCChHHHHHHh
Confidence 4778999999973 345555554433233333 389999865422 234555555
Q ss_pred hhhccCCcEEEECCCChh
Q psy17085 109 YKIKYPGMFHLLRGNHEC 126 (826)
Q Consensus 109 lk~~~p~~v~~lrGNHE~ 126 (826)
+.. -++..||||.
T Consensus 82 ~g~-----d~~~lGNHe~ 94 (277)
T cd07410 82 LGY-----DAGTLGNHEF 94 (277)
T ss_pred cCC-----CEEeecccCc
Confidence 442 2455699995
No 98
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=89.78 E-value=0.41 Score=48.69 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=39.5
Q ss_pred cCCCCHHHHHHHHHhCCC-CCCCcccccCcccCCCCCcHHH-HHHHHHhhhcc---------------------CCcEEE
Q psy17085 63 DIHGQYLDLLMLFDYGKY-PPKSRYLFLGDYVDRGSNSLET-ICLLLAYKIKY---------------------PGMFHL 119 (826)
Q Consensus 63 DIHG~~~~L~~~l~~~g~-~~~~~~vflGD~VDrG~~s~ev-l~ll~~lk~~~---------------------p~~v~~ 119 (826)
|++|+=.=|.+.+...-. -..+.++||||++|.|--+-+- -......+..+ ...++.
T Consensus 24 d~~~~D~YL~~~~~~~~~~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~ 103 (193)
T cd08164 24 DLFGNDYFLGHIVSMMQFWLKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLIN 103 (193)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEE
Confidence 566766666666665432 2346789999999987543322 22333332222 135689
Q ss_pred ECCCChhh
Q psy17085 120 LRGNHECA 127 (826)
Q Consensus 120 lrGNHE~~ 127 (826)
|.||||.-
T Consensus 104 V~GNHDIG 111 (193)
T cd08164 104 IAGNHDVG 111 (193)
T ss_pred ECCcccCC
Confidence 99999963
No 99
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=89.18 E-value=0.34 Score=49.98 Aligned_cols=75 Identities=13% Similarity=0.107 Sum_probs=42.8
Q ss_pred CCCeeEEecCCCCHHHHHHHHHhCCCCCCCcccccCcccCCCCCcHHH-------------------------HHHHHHh
Q psy17085 55 GTPLKICGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLET-------------------------ICLLLAY 109 (826)
Q Consensus 55 ~~~i~viGDIHG~~~~L~~~l~~~g~~~~~~~vflGD~VDrG~~s~ev-------------------------l~ll~~l 109 (826)
..++..++|.||.++.+.++.+.+.-...|-++|+||++-....+-|= ++-++..
T Consensus 5 ~~kilA~s~~~g~~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff~~ 84 (255)
T PF14582_consen 5 VRKILAISNFRGDFELLERLVEVIPEKGPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALDKFFRI 84 (255)
T ss_dssp --EEEEEE--TT-HHHHHHHHHHHHHHT-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHHH
T ss_pred chhheeecCcchHHHHHHHHHhhccccCCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHHHH
Confidence 346899999999999999988765444568899999998655444332 2222222
Q ss_pred hhccCCcEEEECCCChhhhh
Q psy17085 110 KIKYPGMFHLLRGNHECANI 129 (826)
Q Consensus 110 k~~~p~~v~~lrGNHE~~~~ 129 (826)
--..+--+++|+||||....
T Consensus 85 L~~~~~p~~~vPG~~Dap~~ 104 (255)
T PF14582_consen 85 LGELGVPVFVVPGNMDAPER 104 (255)
T ss_dssp HHCC-SEEEEE--TTS-SHH
T ss_pred HHhcCCcEEEecCCCCchHH
Confidence 22334568999999997543
No 100
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=86.58 E-value=0.81 Score=48.84 Aligned_cols=65 Identities=22% Similarity=0.115 Sum_probs=40.5
Q ss_pred CeeEEecCCCCHH----------HHHHHHHhCCCCCCCcccccCcccCCCCCc-----HHHHHHHHHhhhccCCcEEEEC
Q psy17085 57 PLKICGDIHGQYL----------DLLMLFDYGKYPPKSRYLFLGDYVDRGSNS-----LETICLLLAYKIKYPGMFHLLR 121 (826)
Q Consensus 57 ~i~viGDIHG~~~----------~L~~~l~~~g~~~~~~~vflGD~VDrG~~s-----~evl~ll~~lk~~~p~~v~~lr 121 (826)
+++-+.|+||++. .+..++++..-.+.+-++..||+++..+.+ ..++..+-.+.. .+ +..
T Consensus 2 ~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~g~----d~-~~~ 76 (257)
T cd07408 2 TILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPISDLDKGETIIKIMNAVGY----DA-VTP 76 (257)
T ss_pred EEEEeccCcccccCCCCccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchhhhhcCCcHHHHHHHhcCC----cE-Ecc
Confidence 4678899999853 455566655433455677799999875533 233444444332 24 456
Q ss_pred CCChh
Q psy17085 122 GNHEC 126 (826)
Q Consensus 122 GNHE~ 126 (826)
||||.
T Consensus 77 GNHef 81 (257)
T cd07408 77 GNHEF 81 (257)
T ss_pred ccccc
Confidence 99995
No 101
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=86.49 E-value=0.61 Score=50.74 Aligned_cols=65 Identities=28% Similarity=0.328 Sum_probs=42.1
Q ss_pred CeeEEecCCCCHHH--------------HHHHHHhCCCC-CCCcccccCcccCCCCC-c-----HHHHHHHHHhhhccCC
Q psy17085 57 PLKICGDIHGQYLD--------------LLMLFDYGKYP-PKSRYLFLGDYVDRGSN-S-----LETICLLLAYKIKYPG 115 (826)
Q Consensus 57 ~i~viGDIHG~~~~--------------L~~~l~~~g~~-~~~~~vflGD~VDrG~~-s-----~evl~ll~~lk~~~p~ 115 (826)
.++.+.|+||++.. +..++++.... ++.-++..||+++..+. + ..+++.+-++...
T Consensus 2 ~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~g~D--- 78 (288)
T cd07412 2 QILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPNSLFVSAGDLIGASPFESALLQDEPTIEALNAMGVD--- 78 (288)
T ss_pred eEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCCCeEEEeCCcccccccchhhcccCCcHHHHHHhhCCe---
Confidence 46788999998653 55566655432 33457779999986653 2 2456666666533
Q ss_pred cEEEECCCChh
Q psy17085 116 MFHLLRGNHEC 126 (826)
Q Consensus 116 ~v~~lrGNHE~ 126 (826)
+ +..||||.
T Consensus 79 -a-~t~GNHef 87 (288)
T cd07412 79 -A-SAVGNHEF 87 (288)
T ss_pred -e-eeeccccc
Confidence 3 55699995
No 102
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=86.08 E-value=1.2 Score=47.89 Aligned_cols=69 Identities=22% Similarity=0.186 Sum_probs=38.9
Q ss_pred CeeEEecCCCC--H--HHHHHHHH-hCCCCCCCcccccCccc-CCCCCcH------HHHHHHHH-hhhccCCcEEEECCC
Q psy17085 57 PLKICGDIHGQ--Y--LDLLMLFD-YGKYPPKSRYLFLGDYV-DRGSNSL------ETICLLLA-YKIKYPGMFHLLRGN 123 (826)
Q Consensus 57 ~i~viGDIHG~--~--~~L~~~l~-~~g~~~~~~~vflGD~V-DrG~~s~------evl~ll~~-lk~~~p~~v~~lrGN 123 (826)
+++++||.=.. . .++.+.+. .....+.+-+|++||++ +-|.... +.+..++. +. ..--++.+.||
T Consensus 2 ~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~--~~~P~~~v~GN 79 (277)
T cd07378 2 RFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPS--LQVPWYLVLGN 79 (277)
T ss_pred eEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccchh--hcCCeEEecCC
Confidence 57899998764 1 23333332 22223446799999997 5554221 22222222 11 12358999999
Q ss_pred Chhh
Q psy17085 124 HECA 127 (826)
Q Consensus 124 HE~~ 127 (826)
||..
T Consensus 80 HD~~ 83 (277)
T cd07378 80 HDYS 83 (277)
T ss_pred cccC
Confidence 9975
No 103
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=85.55 E-value=0.81 Score=53.65 Aligned_cols=48 Identities=23% Similarity=0.353 Sum_probs=41.0
Q ss_pred CcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhhCCh
Q psy17085 84 SRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFY 136 (826)
Q Consensus 84 ~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~gf~ 136 (826)
|++-.+||+.||||.+-.+++.|+... +|=+--||||-..+....|-.
T Consensus 186 DhLHIvGDIyDRGp~pd~ImD~Lm~~h-----svDIQWGNHDIlWMGAa~Gs~ 233 (640)
T PF06874_consen 186 DHLHIVGDIYDRGPRPDKIMDRLMNYH-----SVDIQWGNHDILWMGAAAGSE 233 (640)
T ss_pred hheeecccccCCCCChhHHHHHHhcCC-----CccccccchHHHHHHHhhCCH
Confidence 788899999999999999999998764 467889999998887766643
No 104
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=81.90 E-value=2 Score=46.11 Aligned_cols=67 Identities=16% Similarity=0.150 Sum_probs=49.3
Q ss_pred CCeeEEecCCCC--HHHHHHHHHhCCCCC-CCcccccCcccCCC-CCcHHHHHHHHHhhhccCCcEEEECCCChhh
Q psy17085 56 TPLKICGDIHGQ--YLDLLMLFDYGKYPP-KSRYLFLGDYVDRG-SNSLETICLLLAYKIKYPGMFHLLRGNHECA 127 (826)
Q Consensus 56 ~~i~viGDIHG~--~~~L~~~l~~~g~~~-~~~~vflGD~VDrG-~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~ 127 (826)
|++.++|||=|. ...+...|..+.... .|-+|..||...-| --+-++...|..+... ++.+ |||+.-
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~~~~~L~~~GvD----viT~-GNH~~D 71 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTLKIYEFLKQSGVN----YITM-GNHTWF 71 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCHHHHHHHHhcCCC----EEEc-cchhcc
Confidence 689999999999 566677776655432 35566699999766 4578888888887754 5555 999854
No 105
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=81.14 E-value=1.9 Score=46.19 Aligned_cols=63 Identities=21% Similarity=0.182 Sum_probs=36.2
Q ss_pred eeEEecCCCCHHH----------------------HHHHHHhCCCC-CCCc-ccccCcccCCCCCc-----HHHHHHHHH
Q psy17085 58 LKICGDIHGQYLD----------------------LLMLFDYGKYP-PKSR-YLFLGDYVDRGSNS-----LETICLLLA 108 (826)
Q Consensus 58 i~viGDIHG~~~~----------------------L~~~l~~~g~~-~~~~-~vflGD~VDrG~~s-----~evl~ll~~ 108 (826)
++.+.|+||++.. +..++++.... ..+. ++..||+++..+.+ ..++..+..
T Consensus 3 il~t~D~Hg~~~~~~~~~~~~~~~~~~~~~gG~~r~~~~v~~~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~l~~ 82 (264)
T cd07411 3 LLHINDLHGQLIPHYELEPSNLLARVFGMAGGFAHIATLIKRIRAERNPNTLLLDGGDTWQGSGEALYTRGQAMVDALNA 82 (264)
T ss_pred EEEEcccccCccccccccccccccccccccCcHHHHHHHHHHHHHhcCCCeEEEeCCCccCCChHHhhcCChhHHHHHHh
Confidence 5678899997544 34444443322 2333 45699999876543 234444444
Q ss_pred hhhccCCcEEEECCCChh
Q psy17085 109 YKIKYPGMFHLLRGNHEC 126 (826)
Q Consensus 109 lk~~~p~~v~~lrGNHE~ 126 (826)
+. -. .+. ||||.
T Consensus 83 ~g----~d-a~~-GNHef 94 (264)
T cd07411 83 LG----VD-AMV-GHWEF 94 (264)
T ss_pred hC----Ce-EEe-ccccc
Confidence 33 22 334 99995
No 106
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=78.53 E-value=3.2 Score=44.93 Aligned_cols=65 Identities=17% Similarity=0.137 Sum_probs=37.6
Q ss_pred CeeEEecCCCCHH---------------------HHHHHHHhCCCC-CCCcccccCcccCCCCC-----cHHHHHHHHHh
Q psy17085 57 PLKICGDIHGQYL---------------------DLLMLFDYGKYP-PKSRYLFLGDYVDRGSN-----SLETICLLLAY 109 (826)
Q Consensus 57 ~i~viGDIHG~~~---------------------~L~~~l~~~g~~-~~~~~vflGD~VDrG~~-----s~evl~ll~~l 109 (826)
.++-++|+||++. .+..++++..-. ++.-++..||+++..+. ....++.+-.+
T Consensus 2 ~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~~ 81 (281)
T cd07409 2 TILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFMNLL 81 (281)
T ss_pred EEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHHHhc
Confidence 3677889998753 344455544322 23345558999987653 23344444444
Q ss_pred hhccCCcEEEECCCChh
Q psy17085 110 KIKYPGMFHLLRGNHEC 126 (826)
Q Consensus 110 k~~~p~~v~~lrGNHE~ 126 (826)
.. .+ +..||||.
T Consensus 82 g~----D~-~~lGNHef 93 (281)
T cd07409 82 GY----DA-MTLGNHEF 93 (281)
T ss_pred CC----CE-EEeccccc
Confidence 42 23 44599995
No 107
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=76.74 E-value=3.6 Score=40.91 Aligned_cols=46 Identities=26% Similarity=0.345 Sum_probs=32.8
Q ss_pred CCCCCcccccCccc--CCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhh
Q psy17085 80 YPPKSRYLFLGDYV--DRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANI 129 (826)
Q Consensus 80 ~~~~~~~vflGD~V--DrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~ 129 (826)
..++|.++.-||+- =|=++..+-+.+|-+| |+.-+++|||||...-
T Consensus 41 v~~eDiVllpGDiSWaM~l~ea~~Dl~~i~~L----PG~K~m~rGNHDYWw~ 88 (230)
T COG1768 41 VSPEDIVLLPGDISWAMRLEEAEEDLRFIGDL----PGTKYMIRGNHDYWWS 88 (230)
T ss_pred CChhhEEEecccchhheechhhhhhhhhhhcC----CCcEEEEecCCccccc
Confidence 34567788899985 3445556666666554 6788999999997643
No 108
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=75.05 E-value=2.9 Score=54.41 Aligned_cols=65 Identities=18% Similarity=0.129 Sum_probs=40.5
Q ss_pred CeeEEecCCCCH---HHHHHHHHhCCCCCCCcc-cccCcccCCCCCc-----HHHHHHHHHhhhccCCcEEEECCCChh
Q psy17085 57 PLKICGDIHGQY---LDLLMLFDYGKYPPKSRY-LFLGDYVDRGSNS-----LETICLLLAYKIKYPGMFHLLRGNHEC 126 (826)
Q Consensus 57 ~i~viGDIHG~~---~~L~~~l~~~g~~~~~~~-vflGD~VDrG~~s-----~evl~ll~~lk~~~p~~v~~lrGNHE~ 126 (826)
.++.+.|+||++ ..+..++++..-...+.+ +..||+++..+.+ ...++.+-.+.. -++..||||.
T Consensus 662 ~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~lg~-----d~~~~GNHEf 735 (1163)
T PRK09419 662 TILHTNDFHGHLDGAAKRVTKIKEVKEENPNTILVDAGDVYQGSLYSNLLKGLPVLKMMKEMGY-----DASTFGNHEF 735 (1163)
T ss_pred EEEEEeecccCCCCHHHHHHHHHHHHhhCCCeEEEecCCCCCCcchhhhcCChHHHHHHhCcCC-----CEEEeccccc
Confidence 588999999985 344444554332222334 4489999977644 245555555442 2468999995
No 109
>KOG3662|consensus
Probab=74.88 E-value=3.6 Score=46.44 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=30.8
Q ss_pred CcccccCcccCCCCCc--HHHHHHHHHhhhccC----CcEEEECCCChh
Q psy17085 84 SRYLFLGDYVDRGSNS--LETICLLLAYKIKYP----GMFHLLRGNHEC 126 (826)
Q Consensus 84 ~~~vflGD~VDrG~~s--~evl~ll~~lk~~~p----~~v~~lrGNHE~ 126 (826)
|..+||||++|-|... -|=-.....++..++ ..+..+.||||-
T Consensus 95 dvvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDI 143 (410)
T KOG3662|consen 95 DVVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGRKGNIKVIYIAGNHDI 143 (410)
T ss_pred CEEEEeccccccCccCChHHHHHHHHHHHHhhCCCCCCeeEEeCCcccc
Confidence 6688899999988754 344445555555554 468899999994
No 110
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=73.45 E-value=12 Score=40.72 Aligned_cols=72 Identities=21% Similarity=0.187 Sum_probs=41.0
Q ss_pred eeEEecCCCC--HHHHHHHHHhCCC--CCCCcccccCcccCCCCCcH--H------HHHHHHHhhhccC-CcEEEECCCC
Q psy17085 58 LKICGDIHGQ--YLDLLMLFDYGKY--PPKSRYLFLGDYVDRGSNSL--E------TICLLLAYKIKYP-GMFHLLRGNH 124 (826)
Q Consensus 58 i~viGDIHG~--~~~L~~~l~~~g~--~~~~~~vflGD~VDrG~~s~--e------vl~ll~~lk~~~p-~~v~~lrGNH 124 (826)
.--.|+-..+ ...+..+++.... ++-+-+|+.||+++-+.... + .-.+...++..+| -.|+.+.|||
T Consensus 40 ~~~~G~~~CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNH 119 (296)
T cd00842 40 AGPWGDYGCDSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNH 119 (296)
T ss_pred CCCCcCcCCCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCC
Confidence 3445555432 2344555554332 35577899999998876431 1 1222233443333 3599999999
Q ss_pred hhhhh
Q psy17085 125 ECANI 129 (826)
Q Consensus 125 E~~~~ 129 (826)
|....
T Consensus 120 D~~p~ 124 (296)
T cd00842 120 DSYPV 124 (296)
T ss_pred CCCcc
Confidence 97644
No 111
>KOG2863|consensus
Probab=72.10 E-value=8.4 Score=42.36 Aligned_cols=72 Identities=22% Similarity=0.317 Sum_probs=46.7
Q ss_pred CCeeEEecCCCCHHHHHH---HHHhCCCCCCCcccccCcccC-CCC---CcHHH---HHHHH------HhhhccCCcEEE
Q psy17085 56 TPLKICGDIHGQYLDLLM---LFDYGKYPPKSRYLFLGDYVD-RGS---NSLET---ICLLL------AYKIKYPGMFHL 119 (826)
Q Consensus 56 ~~i~viGDIHG~~~~L~~---~l~~~g~~~~~~~vflGD~VD-rG~---~s~ev---l~ll~------~lk~~~p~~v~~ 119 (826)
|+|.|-|=-||.++.+-+ ..++.|-.+-|.++++||+=. |.. +++.+ ..-+. .=.+..|---+.
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIF 80 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIF 80 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEE
Confidence 689999999999999874 445556567788999999853 221 22222 11111 112344555678
Q ss_pred ECCCChhh
Q psy17085 120 LRGNHECA 127 (826)
Q Consensus 120 lrGNHE~~ 127 (826)
|=||||.+
T Consensus 81 IGGNHEAs 88 (456)
T KOG2863|consen 81 IGGNHEAS 88 (456)
T ss_pred ecCchHHH
Confidence 99999975
No 112
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=69.81 E-value=45 Score=39.19 Aligned_cols=74 Identities=11% Similarity=0.059 Sum_probs=48.2
Q ss_pred HhhccchhhhH-HHHHHHhhcCchHHHHHHHHHHHHHHHHHHhHhhhHHHHhhhcccCCCccccccchhhHHHHHHH
Q psy17085 693 LAVAGLVPFLV-PCVDVLLISGYTPTMELIQTTYSSLLLTTLGGIHLTSHFRAILHNQVNKEDIPTILYPCTFAWIS 768 (826)
Q Consensus 693 Lg~aGliPF~~-~~~~~~~~~~~~~~~~~~~~~Y~a~IlSFLgGv~WG~a~~~~~~~~~~~~~l~~sv~p~l~aw~~ 768 (826)
|=|+-=-|.++ +++-.++..+..|...+.++.-+.+|..|+|-..||.+-+ -+-...|.++...++-.+.|-.+
T Consensus 81 lfygve~pi~~i~l~~lflirel~p~~s~ili~~~i~i~a~~~~l~~g~~sr--~~~glqw~~l~~~~~ml~~giy~ 155 (952)
T TIGR02921 81 LFYGVEAPIFFICLLRLFLIRELNPASSHILINIGIAIAAFAACLFGGVASR--FKIGLQWLQLLAAMLMLLFGIYA 155 (952)
T ss_pred HHHcccchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHhhcchhc--ccchHHHHHHHHHHHHHHHHHHH
Confidence 33333345443 4444455566667778888999999999999999998763 33334567766666555555443
No 113
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=67.50 E-value=5.1 Score=43.49 Aligned_cols=65 Identities=18% Similarity=0.080 Sum_probs=36.7
Q ss_pred CeeEEecCCCCHHH----------HHHHHHhCCC-----CCCCcccccCcccCCCCC-----cHHHHHHHHHhhhccCCc
Q psy17085 57 PLKICGDIHGQYLD----------LLMLFDYGKY-----PPKSRYLFLGDYVDRGSN-----SLETICLLLAYKIKYPGM 116 (826)
Q Consensus 57 ~i~viGDIHG~~~~----------L~~~l~~~g~-----~~~~~~vflGD~VDrG~~-----s~evl~ll~~lk~~~p~~ 116 (826)
.|+...|+||++.. +..++++... .++.-++-.||.+.-.+. ...+++.+-.+...
T Consensus 2 tIl~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~~~~~~g~~~~~~~n~~g~D---- 77 (285)
T cd07405 2 TILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPESDLQDAEPDFRGMNLVGYD---- 77 (285)
T ss_pred EEEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchhHHhcCcchHHHHHHhhCCc----
Confidence 36778999998643 3344443321 233345559999843232 22345555555532
Q ss_pred EEEECCCChh
Q psy17085 117 FHLLRGNHEC 126 (826)
Q Consensus 117 v~~lrGNHE~ 126 (826)
+ +..||||.
T Consensus 78 a-~~~GNHEf 86 (285)
T cd07405 78 A-MAVGNHEF 86 (285)
T ss_pred E-Eeeccccc
Confidence 3 44599995
No 114
>KOG1432|consensus
Probab=66.80 E-value=9 Score=42.04 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=49.9
Q ss_pred CeeEEecCCCCHH-----------------HHH--HHHHh-CCCCCCCcccccCcccCCCCCcHH---HHHHHHHhhhcc
Q psy17085 57 PLKICGDIHGQYL-----------------DLL--MLFDY-GKYPPKSRYLFLGDYVDRGSNSLE---TICLLLAYKIKY 113 (826)
Q Consensus 57 ~i~viGDIHG~~~-----------------~L~--~~l~~-~g~~~~~~~vflGD~VDrG~~s~e---vl~ll~~lk~~~ 113 (826)
+|+.+.|+|-.+. |+. .++++ +.....|-+||+||.|+. ..... ++.-..+=.+.+
T Consensus 55 KIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g-~~t~Da~~sl~kAvaP~I~~ 133 (379)
T KOG1432|consen 55 KILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFG-HSTQDAATSLMKAVAPAIDR 133 (379)
T ss_pred EEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCcccc-cccHhHHHHHHHHhhhHhhc
Confidence 5788999996665 221 11111 112334789999999995 33322 333222222232
Q ss_pred CCcEEEECCCChhhhhHhhhCChHHHHHHHhHHHHHHHHHHHhcCCcEE
Q psy17085 114 PGMFHLLRGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAA 162 (826)
Q Consensus 114 p~~v~~lrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~f~~LPl~~ 162 (826)
.--..++.||||....-.. ..+++++..||+..
T Consensus 134 ~IPwA~~lGNHDdes~ltr----------------~ql~~~i~~lP~s~ 166 (379)
T KOG1432|consen 134 KIPWAAVLGNHDDESDLTR----------------LQLMKFISKLPYSL 166 (379)
T ss_pred CCCeEEEecccccccccCH----------------HHHHHHHhcCCCcc
Confidence 2236689999986432211 45677788888653
No 115
>KOG2476|consensus
Probab=66.21 E-value=8.9 Score=43.48 Aligned_cols=69 Identities=19% Similarity=0.312 Sum_probs=54.4
Q ss_pred CCCeeEEecCCCCHHHHHHHHHhCCCC--CCCcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCC
Q psy17085 55 GTPLKICGDIHGQYLDLLMLFDYGKYP--PKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNH 124 (826)
Q Consensus 55 ~~~i~viGDIHG~~~~L~~~l~~~g~~--~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNH 124 (826)
+.+|.|+||+-|++..|.+-.+..... |-+.++++|++.+--.++.|++.+....+ ..|--++++-+|.
T Consensus 5 ~~kILv~Gd~~Gr~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~~e~~~ykng~~-~vPiptY~~g~~~ 75 (528)
T KOG2476|consen 5 DAKILVCGDVEGRFDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQNAEVEKYKNGTK-KVPIPTYFLGDNA 75 (528)
T ss_pred CceEEEEcCccccHHHHHHHHHHHhhcCCCceEEEEecccCCCccchhHHHHHhcCCc-cCceeEEEecCCC
Confidence 468999999999999998776665443 35789999999997778888888876644 5577778887776
No 116
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=65.97 E-value=5.6 Score=47.02 Aligned_cols=68 Identities=24% Similarity=0.243 Sum_probs=43.2
Q ss_pred CCCeeEEecCCCCHH------------HH---HHHHHhCCCCC-CCcccccCcccCCCC------CcHHHHHHHHHhhhc
Q psy17085 55 GTPLKICGDIHGQYL------------DL---LMLFDYGKYPP-KSRYLFLGDYVDRGS------NSLETICLLLAYKIK 112 (826)
Q Consensus 55 ~~~i~viGDIHG~~~------------~L---~~~l~~~g~~~-~~~~vflGD~VDrG~------~s~evl~ll~~lk~~ 112 (826)
+-.++-..|+||++. -+ ..+.++..-.. +..++=.||+++..+ .....++++-.++..
T Consensus 26 ~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m~yD 105 (517)
T COG0737 26 KLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNALGYD 105 (517)
T ss_pred eEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHHHHhhcCCc
Confidence 346888999999999 33 23333322222 233444999999844 334567777777644
Q ss_pred cCCcEEEECCCChhh
Q psy17085 113 YPGMFHLLRGNHECA 127 (826)
Q Consensus 113 ~p~~v~~lrGNHE~~ 127 (826)
.+-.||||.-
T Consensus 106 -----a~tiGNHEFd 115 (517)
T COG0737 106 -----AMTLGNHEFD 115 (517)
T ss_pred -----EEeecccccc
Confidence 4888999964
No 117
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=65.40 E-value=8.3 Score=41.14 Aligned_cols=56 Identities=21% Similarity=0.150 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHhCCCCC-CCcccccCcccCCCCC-----cHHHHHHHHHhhhccCCcEEEECCCChh
Q psy17085 66 GQYLDLLMLFDYGKYPP-KSRYLFLGDYVDRGSN-----SLETICLLLAYKIKYPGMFHLLRGNHEC 126 (826)
Q Consensus 66 G~~~~L~~~l~~~g~~~-~~~~vflGD~VDrG~~-----s~evl~ll~~lk~~~p~~v~~lrGNHE~ 126 (826)
|-+.-+..++++..-.. +.-++..||+++.++. ...++..+..+.. -+...||||.
T Consensus 21 gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~~-----d~~~~GNHef 82 (257)
T cd07406 21 GGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNALGV-----DLACFGNHEF 82 (257)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchhhcCCccHHHHHHhcCC-----cEEeeccccc
Confidence 44666777777654333 3357779999987653 2455666655542 2567899995
No 118
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=64.42 E-value=7.9 Score=39.69 Aligned_cols=72 Identities=10% Similarity=0.077 Sum_probs=39.6
Q ss_pred eeEEecCCCC-----HHHHHHHHHhCC-CCCCCcccccCcccCCCCCcH-------------HHHHHHHHhhhc--cCCc
Q psy17085 58 LKICGDIHGQ-----YLDLLMLFDYGK-YPPKSRYLFLGDYVDRGSNSL-------------ETICLLLAYKIK--YPGM 116 (826)
Q Consensus 58 i~viGDIHG~-----~~~L~~~l~~~g-~~~~~~~vflGD~VDrG~~s~-------------evl~ll~~lk~~--~p~~ 116 (826)
|++++|+|-. ++.|.++|+... -..-+.+|++|+++|.-.... +.+..+...... .--+
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPSTQ 80 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCSE
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccccE
Confidence 4677777755 667788888776 545577999999999632221 111111111111 1257
Q ss_pred EEEECCCChhhhh
Q psy17085 117 FHLLRGNHECANI 129 (826)
Q Consensus 117 v~~lrGNHE~~~~ 129 (826)
|+++.|+||....
T Consensus 81 vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 81 VVLVPGPNDPTSS 93 (209)
T ss_dssp EEEE--TTCTT-S
T ss_pred EEEeCCCcccccc
Confidence 9999999997654
No 119
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=62.77 E-value=7.5 Score=42.19 Aligned_cols=66 Identities=18% Similarity=0.030 Sum_probs=37.9
Q ss_pred CeeEEecCCCCHHH-------------HHHHHHhC----CC-CCCCcccccCcccCCCCCc-------HHHHHHHHHhhh
Q psy17085 57 PLKICGDIHGQYLD-------------LLMLFDYG----KY-PPKSRYLFLGDYVDRGSNS-------LETICLLLAYKI 111 (826)
Q Consensus 57 ~i~viGDIHG~~~~-------------L~~~l~~~----g~-~~~~~~vflGD~VDrG~~s-------~evl~ll~~lk~ 111 (826)
.|+-..|+||++.. +.++.+.. .. .++.-++..||.++.-+.+ .-.++++-.+..
T Consensus 7 tILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~~~~g~~~~~~mN~mgy 86 (282)
T cd07407 7 NFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDASPPPGSYSNPIFRMMPY 86 (282)
T ss_pred EEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeeecCCChHHHHHHHhcCC
Confidence 57888999998642 22222221 11 2223455699999864432 223555555543
Q ss_pred ccCCcEEEECCCChhh
Q psy17085 112 KYPGMFHLLRGNHECA 127 (826)
Q Consensus 112 ~~p~~v~~lrGNHE~~ 127 (826)
=.+..||||..
T Consensus 87 -----Da~tlGNHEFd 97 (282)
T cd07407 87 -----DLLTIGNHELY 97 (282)
T ss_pred -----cEEeecccccC
Confidence 25889999973
No 120
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only]
Probab=61.89 E-value=67 Score=33.91 Aligned_cols=44 Identities=16% Similarity=-0.085 Sum_probs=35.1
Q ss_pred HHHHHHHHHhHhhhHHHHhhhcccCCCccccccchhhHHHHHHHHhh
Q psy17085 725 YSSLLLTTLGGIHLTSHFRAILHNQVNKEDIPTILYPCTFAWISLLA 771 (826)
Q Consensus 725 Y~a~IlSFLgGv~WG~a~~~~~~~~~~~~~l~~sv~p~l~aw~~ll~ 771 (826)
=+|+.++-+..+.|+.+.. .++..+...+||..+.++||..++.
T Consensus 18 v~al~~~v~~~~~w~vs~~---tg~~~~VD~~Wg~~~~~~a~~~~l~ 61 (272)
T COG3752 18 VVALALAVLFAVAWAVSRR---TGNYSWVDAVWGGGFVAVAVVLALL 61 (272)
T ss_pred HHHHHHHHHHHHHHHHHHh---hcCcceeehhccchHHHHHHHHHHH
Confidence 4566677788899999874 4455678889999999999998884
No 121
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=59.48 E-value=15 Score=39.20 Aligned_cols=65 Identities=18% Similarity=0.126 Sum_probs=44.2
Q ss_pred CeeEEecCCCCHHH--HHHHHHhCCCC-CCCcccccCcccCCC-CCcHHHHHHHHHhhhccCCcEEEECCCChh
Q psy17085 57 PLKICGDIHGQYLD--LLMLFDYGKYP-PKSRYLFLGDYVDRG-SNSLETICLLLAYKIKYPGMFHLLRGNHEC 126 (826)
Q Consensus 57 ~i~viGDIHG~~~~--L~~~l~~~g~~-~~~~~vflGD~VDrG-~~s~evl~ll~~lk~~~p~~v~~lrGNHE~ 126 (826)
++.++|||-|.... +...+...... +.|-+|-.||..--| .-+-++...|..+... +..+ ||||.
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~~~~~~~L~~~G~D----~iTl-GNH~f 69 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKIDFVIANGENAAGGKGITPKIAKELLSAGVD----VITM-GNHTW 69 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCCEEEECCccccCCCCCCHHHHHHHHhcCCC----EEEe-ccccc
Confidence 47899999998653 34445444322 235566689998766 3678888888888754 4444 99984
No 122
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=57.78 E-value=5.2 Score=45.14 Aligned_cols=47 Identities=23% Similarity=0.376 Sum_probs=38.0
Q ss_pred CcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhhCC
Q psy17085 84 SRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGF 135 (826)
Q Consensus 84 ~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~gf 135 (826)
|++-.+||+-||||++-.+++-|..+. .+-+=-||||-..+....|-
T Consensus 192 DhLHiVGDIyDRGP~pd~Imd~L~~yh-----svDiQWGNHDilWmgA~sGs 238 (648)
T COG3855 192 DHLHIVGDIYDRGPYPDKIMDTLINYH-----SVDIQWGNHDILWMGAASGS 238 (648)
T ss_pred hheeeecccccCCCCchHHHHHHhhcc-----cccccccCcceEEeecccCC
Confidence 677789999999999999999988765 35577899998777655443
No 123
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=57.09 E-value=13 Score=41.09 Aligned_cols=64 Identities=25% Similarity=0.189 Sum_probs=39.5
Q ss_pred eeEEecCCCCHH------HHHHHHHhCCC-----CCCCcccccCcccCCCCC-------------cHHHHHHHHHhhhcc
Q psy17085 58 LKICGDIHGQYL------DLLMLFDYGKY-----PPKSRYLFLGDYVDRGSN-------------SLETICLLLAYKIKY 113 (826)
Q Consensus 58 i~viGDIHG~~~------~L~~~l~~~g~-----~~~~~~vflGD~VDrG~~-------------s~evl~ll~~lk~~~ 113 (826)
++-..|+||++. .+..+++...- .++.-++..||.+.-++. ....++++-++...
T Consensus 3 IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN~~g~D- 81 (313)
T cd08162 3 LLHTSDGESGLLAEDDAPNFSALVNALKDEAAAEYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILNALGVQ- 81 (313)
T ss_pred EEEecccccCccccCCHHHHHHHHHHHHHhhhccCCCeEEEecCccccCchhhhhhccccccccCChHHHHHHhccCCc-
Confidence 566789999964 33333443321 233456679999875442 34556666666643
Q ss_pred CCcEEEECCCChh
Q psy17085 114 PGMFHLLRGNHEC 126 (826)
Q Consensus 114 p~~v~~lrGNHE~ 126 (826)
.+..||||.
T Consensus 82 ----a~tlGNHEF 90 (313)
T cd08162 82 ----AIALGNHEF 90 (313)
T ss_pred ----EEecccccc
Confidence 477999994
No 124
>PF08321 PPP5: PPP5 TPR repeat region; InterPro: IPR013235 This domain is specific to the PPP5 subfamily of serine/threonine phosphatases.; GO: 0004722 protein serine/threonine phosphatase activity, 0046872 metal ion binding; PDB: 3ICF_B 3H60_B 3H63_A 3H66_A 3H62_B 1A17_A 1S95_B 3H69_A 3H68_D 3H64_D ....
Probab=56.75 E-value=22 Score=31.95 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=22.0
Q ss_pred ccCCHHHHHHHHHHHHHHHhcCCCceee
Q psy17085 27 VNLHESEISALCRVSREIFLSEPMLLEL 54 (826)
Q Consensus 27 ~~~~~~~~~~l~~~~~~~~~~ep~~l~~ 54 (826)
..++...+..|+.++.++|+++|+++++
T Consensus 68 K~Lhkkyv~~Il~~~~~llk~~PslVeI 95 (95)
T PF08321_consen 68 KKLHKKYVYQILLEAKKLLKQLPSLVEI 95 (95)
T ss_dssp ----HHHHHHHHHHHHHHHHTS-SEEEE
T ss_pred CCccHHHHHHHHHHHHHHHHhCcCccCC
Confidence 3488999999999999999999999975
No 125
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=50.33 E-value=17 Score=44.36 Aligned_cols=69 Identities=16% Similarity=0.121 Sum_probs=42.4
Q ss_pred eCCCeeEEecCCCCHHH----------------HHHHHHhCCCC-CCCcccccCcccCCCCCcH-------------HHH
Q psy17085 54 LGTPLKICGDIHGQYLD----------------LLMLFDYGKYP-PKSRYLFLGDYVDRGSNSL-------------ETI 103 (826)
Q Consensus 54 ~~~~i~viGDIHG~~~~----------------L~~~l~~~g~~-~~~~~vflGD~VDrG~~s~-------------evl 103 (826)
+.-+|.-..|+||++.. +..++++..-. ++..++-.||.+...+.+- -++
T Consensus 24 ~~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~llvD~GD~~qGsp~~~~~~~~~~~~g~~~p~i 103 (649)
T PRK09420 24 VDLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEAKNSVLVDNGDLIQGSPLGDYMAAKGLKAGDVHPVY 103 (649)
T ss_pred ceEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhCCCEEEEECCCcCCCchhhhhhhhccccCCCcchHH
Confidence 34578889999999753 23333333211 2344666999998655431 255
Q ss_pred HHHHHhhhccCCcEEEECCCChhh
Q psy17085 104 CLLLAYKIKYPGMFHLLRGNHECA 127 (826)
Q Consensus 104 ~ll~~lk~~~p~~v~~lrGNHE~~ 127 (826)
..+-.+... ....||||.-
T Consensus 104 ~amN~lgyD-----a~tlGNHEFd 122 (649)
T PRK09420 104 KAMNTLDYD-----VGNLGNHEFN 122 (649)
T ss_pred HHHHhcCCc-----EEeccchhhh
Confidence 666555533 4789999953
No 126
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=49.66 E-value=32 Score=39.62 Aligned_cols=120 Identities=22% Similarity=0.305 Sum_probs=62.3
Q ss_pred CeeEEecCCC-C----HHHHHHHHHhCCCCC----CCc-ccccCcccCC-CC-----------CcHHHHHHHHHhhhccC
Q psy17085 57 PLKICGDIHG-Q----YLDLLMLFDYGKYPP----KSR-YLFLGDYVDR-GS-----------NSLETICLLLAYKIKYP 114 (826)
Q Consensus 57 ~i~viGDIHG-~----~~~L~~~l~~~g~~~----~~~-~vflGD~VDr-G~-----------~s~evl~ll~~lk~~~p 114 (826)
.+.+++|+|= . -+.+..+++.++-+. .-+ ++..||.||- |- +..|-++.+..+...-|
T Consensus 227 ~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~vp 306 (481)
T COG1311 227 YVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQVP 306 (481)
T ss_pred EEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHHHHHhhCC
Confidence 3789999996 2 233444444444332 224 5568899993 22 22333444544444445
Q ss_pred C--cEEEECCCChhhhhHhhh-CChHHHHHHHhHHHHHHHHHHHhcCCcEEEECC-cEEEEeCCCCCCcCCHHHHhh
Q psy17085 115 G--MFHLLRGNHECANINKVY-GFYDECKRRYNVKLWKTFTECFNCMPVAAIVDE-KIFCCHGGLSPYLSSIDQIRR 187 (826)
Q Consensus 115 ~--~v~~lrGNHE~~~~~~~~-gf~~e~~~~~~~~~~~~~~~~f~~LPl~~~i~~-~il~vHgGi~~~~~~l~~i~~ 187 (826)
. .|++.+||||..-....- .+.......| ...+-.|-.=|...-+++ +++..||- ++++|..
T Consensus 307 ~~I~v~i~PGnhDa~r~a~PQp~~~~~~kslf-----~~~n~~~v~NP~~~~l~G~~vL~~hG~------sidDii~ 372 (481)
T COG1311 307 EHIKVFIMPGNHDAVRQALPQPHFPELIKSLF-----SLNNLLFVSNPALVSLHGVDVLIYHGR------SIDDIIK 372 (481)
T ss_pred CCceEEEecCCCCccccccCCCCcchhhcccc-----cccceEecCCCcEEEECCEEEEEecCC------CHHHHHh
Confidence 4 588999999986554332 2222222222 111111112244444444 67888874 5666654
No 127
>KOG1187|consensus
Probab=49.44 E-value=3.6 Score=46.33 Aligned_cols=142 Identities=11% Similarity=-0.022 Sum_probs=97.5
Q ss_pred CccchheecccceeeecccccCCC-ccchheeccCCCccchhhccccccccccCCcceeee--eccccccCCC---ccce
Q psy17085 476 PKLSTVLRKLKVKVWSQAECLDYD-PEVEKQICAGGEKGNVDVKEDLRFEEVDSSRRLTVC--QFNDVHHSES---FTTI 549 (826)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~ 549 (826)
...+.-+.|.+.-.+=++|++.-+ .-++-||-++|-..++...+... +.+|..|+..+ .++...+-|. ++.+
T Consensus 122 i~~ls~l~H~Nlv~LlGyC~e~~~~~~LVYEym~nGsL~d~L~~~~~~--~L~W~~R~kIa~g~A~gL~yLH~~~~~~ii 199 (361)
T KOG1187|consen 122 VEILSRLRHPNLVKLLGYCLEGGEHRLLVYEYMPNGSLEDHLHGKKGE--PLDWETRLKIALGAARGLAYLHEGCPPPII 199 (361)
T ss_pred HHHHhcCCCcCcccEEEEEecCCceEEEEEEccCCCCHHHHhCCCCCC--CCCHHHHHHHHHHHHHHHHHHccCCCCCEe
Confidence 333444444455557677777774 88999999999888888887654 67999988766 6776665554 3599
Q ss_pred eccccCCCCCCCCCCccccccccccccccc-ccccccc-CCCCCCcccccccccccccCCCcccccccccccchhHHhhh
Q psy17085 550 WRNFCSQQTKPGTKDTKEEDEFNIKYTLKQ-DDLNRIK-QGLSGKPLKVEEIVDEENAGNNEEIVGHNKKALSEMDKKIK 627 (826)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (826)
||+.++|+-.-|+-.+-|..+||+--.-+. +...... .|-. -|++||=..- -..+++.++||..+.-|+
T Consensus 200 HrDiKssNILLD~~~~aKlsDFGLa~~~~~~~~~~~~~~~gt~-------gY~~PEy~~~--g~lt~KsDVySFGVvllE 270 (361)
T KOG1187|consen 200 HRDIKSSNILLDEDFNAKLSDFGLAKLGPEGDTSVSTTVMGTF-------GYLAPEYAST--GKLTEKSDVYSFGVVLLE 270 (361)
T ss_pred cCCCCHHHeeECCCCCEEccCccCcccCCccccceeeecCCCC-------ccCChhhhcc--CCcCcccccccchHHHHH
Confidence 999999999999888999999988743333 2222221 2222 2666654433 457778899999876655
Q ss_pred h
Q psy17085 628 E 628 (826)
Q Consensus 628 ~ 628 (826)
-
T Consensus 271 l 271 (361)
T KOG1187|consen 271 L 271 (361)
T ss_pred H
Confidence 3
No 128
>PF14164 YqzH: YqzH-like protein
Probab=47.78 E-value=42 Score=27.80 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=40.4
Q ss_pred CCccCHHHHHHHHHccccCCCCcccCCHHHHHHHHHHHHHHHhcCCC
Q psy17085 4 VDSLNLDSIINRLIDIDARSGRNVNLHESEISALCRVSREIFLSEPM 50 (826)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ep~ 50 (826)
|+.--+++++.+.++.+.......+++..|...|+........++|.
T Consensus 1 M~ek~I~Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~i~~~~~~~~~ 47 (64)
T PF14164_consen 1 MNEKLIEKMIINCLRQYGYDVECMPLSDEEWEELCKHIQERKNEEPD 47 (64)
T ss_pred CcHHHHHHHHHHHHHHhCCcccCCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 44555889999999988766678899999999999999999998886
No 129
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=47.11 E-value=18 Score=43.78 Aligned_cols=65 Identities=18% Similarity=0.140 Sum_probs=39.2
Q ss_pred CeeEEecCCCCHHH----------------HHHHHHhCCCC-CCCcccccCcccCCCCCc-------------HHHHHHH
Q psy17085 57 PLKICGDIHGQYLD----------------LLMLFDYGKYP-PKSRYLFLGDYVDRGSNS-------------LETICLL 106 (826)
Q Consensus 57 ~i~viGDIHG~~~~----------------L~~~l~~~g~~-~~~~~vflGD~VDrG~~s-------------~evl~ll 106 (826)
+|.-..|+||++.. +..++++..-. ++..++-.||.+...+.+ .-++..+
T Consensus 4 ~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p~~~~m 83 (626)
T TIGR01390 4 RIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEVKNSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHPVYKAM 83 (626)
T ss_pred EEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhCCCeEEEECCCcCCCccchhhhhhccccCCCcChHHHHH
Confidence 56778899999753 23344433211 234466699999854432 2245555
Q ss_pred HHhhhccCCcEEEECCCChh
Q psy17085 107 LAYKIKYPGMFHLLRGNHEC 126 (826)
Q Consensus 107 ~~lk~~~p~~v~~lrGNHE~ 126 (826)
-.+... .+..||||.
T Consensus 84 N~lgyD-----a~tlGNHEF 98 (626)
T TIGR01390 84 NLLKYD-----VGNLGNHEF 98 (626)
T ss_pred hhcCcc-----EEecccccc
Confidence 555532 478899994
No 130
>COG4214 XylH ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]
Probab=46.98 E-value=61 Score=35.99 Aligned_cols=92 Identities=15% Similarity=0.147 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhHhhhHHHHhhhcccCCCccccccchhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhcc-----
Q psy17085 721 IQTTYSSLLLTTLGGIHLTSHFRAILHNQVNKEDIPTILYPCTFAWISLLAPSVGLVVNSTGLVLLLLADIQKNQ----- 795 (826)
Q Consensus 721 ~~~~Y~a~IlSFLgGv~WG~a~~~~~~~~~~~~~l~~sv~p~l~aw~~ll~~~~~l~~l~~gf~~~~~~d~~~~~----- 795 (826)
.|+.==|-.|.|-|-..|=..-..-.|-+.+...+.-+.+|..++|... ++..+.++.+.+..|+-.+
T Consensus 139 SFIVTLaGmLvfrGl~~~v~~g~ti~P~~~~f~~ig~g~ip~~~~~~~~-------~v~~~~~v~~~~r~R~~r~~~gl~ 211 (394)
T COG4214 139 SFIVTLAGMLVFRGLTLGVTGGTTVAPYPSTFSLIGQGFLPAILGWILG-------LVALAAIVFAGLRGRRRRIRHGLE 211 (394)
T ss_pred hHHHHhHHHHHHhhhhEEeeCCcccCCCCcHHHHhhcccccchHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444556677777766553322222344455666777889988888754 1122223333333333222
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHH
Q psy17085 796 ARPSWYKSLRLMTTSTAVVTMVVM 819 (826)
Q Consensus 796 ~~p~wy~~lR~~lT~~v~~~l~~~ 819 (826)
..|.|...+|..+++++++++...
T Consensus 212 ~~p~~~~~~k~~~~~~~il~~v~~ 235 (394)
T COG4214 212 VPPFWAFVLKLLVIAAIILGLVYV 235 (394)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999988876544
No 131
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=46.88 E-value=18 Score=47.33 Aligned_cols=65 Identities=22% Similarity=0.265 Sum_probs=38.4
Q ss_pred CeeEEecCCCCHHH----------------HHHHHHhCCCC-CCCcccccCcccCCCCC--------------cHHHHHH
Q psy17085 57 PLKICGDIHGQYLD----------------LLMLFDYGKYP-PKSRYLFLGDYVDRGSN--------------SLETICL 105 (826)
Q Consensus 57 ~i~viGDIHG~~~~----------------L~~~l~~~g~~-~~~~~vflGD~VDrG~~--------------s~evl~l 105 (826)
.++-..|+||++.. +..++++..-. ++.-++-.||.+...+- ...++..
T Consensus 43 ~il~tnD~Hg~l~~~~y~~~~~~~~~Glar~at~i~~~r~~~~n~llld~GD~~qGs~l~~~~~~~~~~~~~~~~~~i~~ 122 (1163)
T PRK09419 43 QILATTDLHGNFMDYDYASDKETTGFGLAQTATLIKKARKENPNTLLVDNGDLIQGNPLGEYAVKDNILFKNKTHPMIKA 122 (1163)
T ss_pred EEEEEecccccccccccccCCCCCCcCHHHHHHHHHHHHHhCCCeEEEeCCCccCCChhhhHHhhhccccCCCcCHHHHH
Confidence 68899999999643 23344433222 22334449999986541 1234454
Q ss_pred HHHhhhccCCcEEEECCCChh
Q psy17085 106 LLAYKIKYPGMFHLLRGNHEC 126 (826)
Q Consensus 106 l~~lk~~~p~~v~~lrGNHE~ 126 (826)
+-.+.. =.+..||||.
T Consensus 123 mN~lgy-----Da~~lGNHEF 138 (1163)
T PRK09419 123 MNALGY-----DAGTLGNHEF 138 (1163)
T ss_pred HhhcCc-----cEEeeccccc
Confidence 444442 2467999996
No 132
>KOG3947|consensus
Probab=42.38 E-value=29 Score=37.09 Aligned_cols=63 Identities=22% Similarity=0.290 Sum_probs=41.8
Q ss_pred CeeEEecCCCCHHHHHHHHHhCCCCCCCcccccCcccCCCCCcHHHHHHHHHhhhccC-CcEEEECCCChhh
Q psy17085 57 PLKICGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYP-GMFHLLRGNHECA 127 (826)
Q Consensus 57 ~i~viGDIHG~~~~L~~~l~~~g~~~~~~~vflGD~VDrG~~s~evl~ll~~lk~~~p-~~v~~lrGNHE~~ 127 (826)
+.+.|+|.|+...+.. ..++.|-++-+||+-.-|. +-||..+=..+- ..| ..=+.|+||||..
T Consensus 63 r~VcisdtH~~~~~i~------~~p~gDvlihagdfT~~g~-~~ev~~fn~~~g-slph~yKIVIaGNHELt 126 (305)
T KOG3947|consen 63 RFVCISDTHELTFDIN------DIPDGDVLIHAGDFTNLGL-PEEVIKFNEWLG-SLPHEYKIVIAGNHELT 126 (305)
T ss_pred EEEEecCcccccCccc------cCCCCceEEeccCCccccC-HHHHHhhhHHhc-cCcceeeEEEeecccee
Confidence 5899999999755433 3566787889999987664 456655433221 112 2346899999964
No 133
>KOG1378|consensus
Probab=41.91 E-value=24 Score=40.46 Aligned_cols=73 Identities=21% Similarity=0.083 Sum_probs=40.0
Q ss_pred eCCCeeEEecCCCCHHH--HHHHHHhCCCCCCCcccccCcccC-CCCCc---HHHHHHHHHhhhccCCcEEEECCCChhh
Q psy17085 54 LGTPLKICGDIHGQYLD--LLMLFDYGKYPPKSRYLFLGDYVD-RGSNS---LETICLLLAYKIKYPGMFHLLRGNHECA 127 (826)
Q Consensus 54 ~~~~i~viGDIHG~~~~--L~~~l~~~g~~~~~~~vflGD~VD-rG~~s---~evl~ll~~lk~~~p~~v~~lrGNHE~~ 127 (826)
...++.|+||+==.... .+...+... .-+-++++||+.- .+..+ -+-.+++.-+...-| ..+.-||||..
T Consensus 146 ~~~~~~i~GDlG~~~~~~s~~~~~~~~~--k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp~As~vP--ymv~~GNHE~d 221 (452)
T KOG1378|consen 146 SPTRAAIFGDMGCTEPYTSTLRNQEENL--KPDAVLHIGDLSYAMGYSNWQWDEFGRQVEPIASYVP--YMVCSGNHEID 221 (452)
T ss_pred CceeEEEEccccccccccchHhHHhccc--CCcEEEEecchhhcCCCCccchHHHHhhhhhhhccCc--eEEeccccccc
Confidence 34569999998443333 222222222 3577899999872 23222 222333333332323 45788999976
Q ss_pred hhH
Q psy17085 128 NIN 130 (826)
Q Consensus 128 ~~~ 130 (826)
..+
T Consensus 222 ~~~ 224 (452)
T KOG1378|consen 222 WPP 224 (452)
T ss_pred CCC
Confidence 654
No 134
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=41.13 E-value=29 Score=43.20 Aligned_cols=66 Identities=20% Similarity=0.196 Sum_probs=40.0
Q ss_pred CCeeEEecCCCCHHHH----------------HHHHHhCCC-CCCCcccccCcccCCCCCc--------------HHHHH
Q psy17085 56 TPLKICGDIHGQYLDL----------------LMLFDYGKY-PPKSRYLFLGDYVDRGSNS--------------LETIC 104 (826)
Q Consensus 56 ~~i~viGDIHG~~~~L----------------~~~l~~~g~-~~~~~~vflGD~VDrG~~s--------------~evl~ 104 (826)
-+|+-..|+||++... ..++++..- .++..++..||++..-+.+ .-++.
T Consensus 116 LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~~P~i~ 195 (814)
T PRK11907 116 VRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKENPNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQHPMYA 195 (814)
T ss_pred EEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhCCCEEEEecCCCCCCCcccchhhhccccccCcchHHHH
Confidence 3578899999996532 223333221 1234466699999754432 12566
Q ss_pred HHHHhhhccCCcEEEECCCChh
Q psy17085 105 LLLAYKIKYPGMFHLLRGNHEC 126 (826)
Q Consensus 105 ll~~lk~~~p~~v~~lrGNHE~ 126 (826)
.+-.|... .+..||||+
T Consensus 196 amN~LGyD-----A~tLGNHEF 212 (814)
T PRK11907 196 ALEALGFD-----AGTLGNHEF 212 (814)
T ss_pred HHhccCCC-----EEEechhhc
Confidence 66666533 478899995
No 135
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=40.76 E-value=9.5 Score=20.17 Aligned_cols=8 Identities=50% Similarity=1.203 Sum_probs=6.2
Q ss_pred hhccchhh
Q psy17085 694 AVAGLVPF 701 (826)
Q Consensus 694 g~aGliPF 701 (826)
|-.|||||
T Consensus 1 gssGlI~f 8 (11)
T PF08259_consen 1 GSSGLIPF 8 (11)
T ss_pred CCcccccc
Confidence 45789998
No 136
>KOG3339|consensus
Probab=40.50 E-value=1.1e+02 Score=30.84 Aligned_cols=85 Identities=18% Similarity=0.263 Sum_probs=64.4
Q ss_pred CcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhhCCh----------------HHHHHHHhHHH
Q psy17085 84 SRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFY----------------DECKRRYNVKL 147 (826)
Q Consensus 84 ~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~gf~----------------~e~~~~~~~~~ 147 (826)
..+||+| .|-+.-|.++++.+++..|-.+-+. .|+-|.+..+....|. .|..+.|-..+
T Consensus 40 ~~lVvlG----SGGHT~EMlrLl~~l~~~y~~r~yI-~a~tD~mS~~k~~~F~~~~a~~~a~~~~ipRsReVgQS~ltSv 114 (211)
T KOG3339|consen 40 STLVVLG----SGGHTGEMLRLLEALQDLYSPRSYI-AADTDEMSEQKARSFELSLAHCKAKNYEIPRSREVGQSWLTSV 114 (211)
T ss_pred eEEEEEc----CCCcHHHHHHHHHHHHhhcCceEEE-EecCchhhHHHHHhhhccccccchhheecchhhhhhhhhhhhH
Confidence 3588887 5889999999999999998776555 8999888776644443 23444455667
Q ss_pred HHHHHHHHhcCCcEEEECCcEEEEeC
Q psy17085 148 WKTFTECFNCMPVAAIVDEKIFCCHG 173 (826)
Q Consensus 148 ~~~~~~~f~~LPl~~~i~~~il~vHg 173 (826)
|..+.....++++...+.-+++.+-|
T Consensus 115 ~Tti~all~s~~lv~RirPdlil~NG 140 (211)
T KOG3339|consen 115 FTTIWALLQSFVLVWRIRPDLILCNG 140 (211)
T ss_pred HHHHHHHHHHheEEEecCCCEEEECC
Confidence 88888888888888887767777776
No 137
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=36.97 E-value=47 Score=39.67 Aligned_cols=64 Identities=19% Similarity=0.105 Sum_probs=37.5
Q ss_pred eeEEecCCCCHHH---------------------HHHHHHhCCC-CCCCcccccCcccCCCCCc-----HHHHHHHHHhh
Q psy17085 58 LKICGDIHGQYLD---------------------LLMLFDYGKY-PPKSRYLFLGDYVDRGSNS-----LETICLLLAYK 110 (826)
Q Consensus 58 i~viGDIHG~~~~---------------------L~~~l~~~g~-~~~~~~vflGD~VDrG~~s-----~evl~ll~~lk 110 (826)
++-+.|+||++.. +..++++..- .++.-++..||.+...+.+ ...++++-++.
T Consensus 3 ILhtND~Hg~l~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~n~l~ldaGD~~~gs~~~~~~~g~~~i~~~N~~g 82 (550)
T TIGR01530 3 IIHINDHHSHLEPEELEIALAGEQLKAAIGGFAALNAEINKLRAESKNALVLHAGDAIIGTLYFTLFGGRADAALMNAAG 82 (550)
T ss_pred EEEEccccccccCcccccccCCCccccccCCHHHHHHHHHHHHhhCCCeEEEECCCCCCCccchhhcCCHHHHHHHhccC
Confidence 5567788888644 2233333221 2344566799998755432 23455555555
Q ss_pred hccCCcEEEECCCChh
Q psy17085 111 IKYPGMFHLLRGNHEC 126 (826)
Q Consensus 111 ~~~p~~v~~lrGNHE~ 126 (826)
.. .+..||||.
T Consensus 83 ~D-----a~~lGNHEF 93 (550)
T TIGR01530 83 FD-----FFTLGNHEF 93 (550)
T ss_pred CC-----EEEeccccc
Confidence 33 588999995
No 138
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=36.27 E-value=67 Score=34.90 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=47.5
Q ss_pred CCeeEEecCC----CCHHHHHHHHHhCC-C-CC---CCcccccCcccCCC----CCcH----HHHHHHHHh-hhccC---
Q psy17085 56 TPLKICGDIH----GQYLDLLMLFDYGK-Y-PP---KSRYLFLGDYVDRG----SNSL----ETICLLLAY-KIKYP--- 114 (826)
Q Consensus 56 ~~i~viGDIH----G~~~~L~~~l~~~g-~-~~---~~~~vflGD~VDrG----~~s~----evl~ll~~l-k~~~p--- 114 (826)
..++|+||+| -.++.|.++|+.+. . +. ...+||+|++.-+. ..+. |-.+-|..+ ...+|
T Consensus 28 ~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp~L~ 107 (291)
T PTZ00235 28 HNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFKLIL 107 (291)
T ss_pred eEEEEEEeeccCCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhChHHH
Confidence 4589999999 56778888888762 2 21 24589999998763 2222 334444432 23454
Q ss_pred --CcEEEECCCChhh
Q psy17085 115 --GMFHLLRGNHECA 127 (826)
Q Consensus 115 --~~v~~lrGNHE~~ 127 (826)
.+++++.|-.|-.
T Consensus 108 ~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 108 EHCYLIFIPGINDPC 122 (291)
T ss_pred hcCeEEEECCCCCCC
Confidence 6899999999964
No 139
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=35.99 E-value=12 Score=39.77 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=0.0
Q ss_pred CCchhHHHHhhccchhhhHHHHHH-HhhcCchHHH
Q psy17085 685 QVPNHIMLLAVAGLVPFLVPCVDV-LLISGYTPTM 718 (826)
Q Consensus 685 ~~p~~~~~Lg~aGliPF~~~~~~~-~~~~~~~~~~ 718 (826)
+-|.+...|+++.|+=.++.++.+ ..++++...+
T Consensus 17 r~p~~~a~l~~~~llll~ail~w~~iimsd~t~~a 51 (381)
T PF05297_consen 17 RCPQPHASLLFGLLLLLVAILVWFFIIMSDLTQGA 51 (381)
T ss_dssp -----------------------------------
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 446666678888887766533322 2344444433
No 140
>KOG0192|consensus
Probab=35.98 E-value=7.8 Score=43.64 Aligned_cols=140 Identities=13% Similarity=0.041 Sum_probs=92.3
Q ss_pred CCccchheecccceeeecccccCC-CccchheeccCCCccchhhccccccccccCCc--ceeeeeccccccCCCcc-cee
Q psy17085 475 DPKLSTVLRKLKVKVWSQAECLDY-DPEVEKQICAGGEKGNVDVKEDLRFEEVDSSR--RLTVCQFNDVHHSESFT-TIW 550 (826)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~ 550 (826)
|..+..-+.|.++.-+-++|...+ ..-++.||.++|-.-....++ .+...++.. +..++.+++|.+=|+.. .+|
T Consensus 89 E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~~GsL~~~l~~~--~~~~l~~~~~l~~aldiArGm~YLH~~~~iIH 166 (362)
T KOG0192|consen 89 EASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMPGGSLSVLLHKK--RKRKLPLKVRLRIALDIARGMEYLHSEGPIIH 166 (362)
T ss_pred HHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCCCCcHHHHHhhc--ccCCCCHHHHHHHHHHHHHHHHHHhcCCCeee
Confidence 333444444444444766644444 478999999999998888775 233444444 55666899999988888 899
Q ss_pred ccccCCCCCCCCCC-ccccccccccccccccccccccCCCCCCcccccccccccccCCCcccccccccccchh
Q psy17085 551 RNFCSQQTKPGTKD-TKEEDEFNIKYTLKQDDLNRIKQGLSGKPLKVEEIVDEENAGNNEEIVGHNKKALSEM 622 (826)
Q Consensus 551 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (826)
|..+.++...+..+ ..|..+||+........ ....+-..|.+||-+ |.....-+..+.+-++||-.
T Consensus 167 rDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~-----~~~~~~~GT~~wMAP-Ev~~~~~~~~~~K~DvySFg 233 (362)
T KOG0192|consen 167 RDLKSDNILVDLKGKTLKIADFGLSREKVISK-----TSMTSVAGTYRWMAP-EVLRGEKSPYTEKSDVYSFG 233 (362)
T ss_pred cccChhhEEEcCCCCEEEECCCccceeecccc-----ccccCCCCCccccCh-hhhcCCCCcCCccchhhhHH
Confidence 99999999999997 99999999987765432 101113445555444 33333334455666666663
No 141
>COG3256 NorB Nitric oxide reductase large subunit [Inorganic ion transport and metabolism]
Probab=35.46 E-value=2.8e+02 Score=33.23 Aligned_cols=78 Identities=19% Similarity=0.192 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhHhhhHHHHhhhcccCCCccccccchhhHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHhhhcccCChhHH
Q psy17085 724 TYSSLLLTTLGGIHLTSHFRAILHNQVNKEDIPTILYPCTFAWISLLAPSV-GLVVNSTGLVLLLLADIQKNQARPSWYK 802 (826)
Q Consensus 724 ~Y~a~IlSFLgGv~WG~a~~~~~~~~~~~~~l~~sv~p~l~aw~~ll~~~~-~l~~l~~gf~~~~~~d~~~~~~~p~wy~ 802 (826)
+|..+++.-++|+. .+.+.+-|+-.|..+.|...++... -+-++..+ ...+....++....|..
T Consensus 488 ~~v~~~l~l~sGii------------GT~HHyYf~G~P~~wm~iGAvfSaLEVvPl~~l~---~~af~~~~r~~~~~~~~ 552 (717)
T COG3256 488 LYVIAALALFSGII------------GTLHHYYFIGTPGYWMWIGAVFSALEVVPLFLLG---LEAFELWKRGEGRDWPN 552 (717)
T ss_pred HHHHHHHHHHcCcc------------CccceeeecCCchHHHHHHHHHHHhhhhHHHHHH---HHHHHHHHhhcccchhh
Confidence 36666666666654 2357899999999999988776543 22223333 33333333335568999
Q ss_pred HHHHHHHHHHHHHH
Q psy17085 803 SLRLMTTSTAVVTM 816 (826)
Q Consensus 803 ~lR~~lT~~v~~~l 816 (826)
+.|..+++.+.++-
T Consensus 553 r~~~~~~~~~Av~~ 566 (717)
T COG3256 553 RARLPWSCFVAVGA 566 (717)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999998877765
No 142
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=35.29 E-value=1.8e+02 Score=27.54 Aligned_cols=55 Identities=24% Similarity=0.247 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHhHhhhHHHHhhhcccCCCccccccchhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhcc
Q psy17085 719 ELIQTTYSSLLLTTLGGIHLTSHFRAILHNQVNKEDIPTILYPCTFAWISLLAPSVGLVVNSTGLVLLLLADIQKNQ 795 (826)
Q Consensus 719 ~~~~~~Y~a~IlSFLgGv~WG~a~~~~~~~~~~~~~l~~sv~p~l~aw~~ll~~~~~l~~l~~gf~~~~~~d~~~~~ 795 (826)
..+++.|..=++.|+.|.--|..+... -+|. ...+++.++++|+++.++|++..+
T Consensus 69 ~aa~l~Y~lPll~li~g~~l~~~~~~~------------------e~~~----~l~~l~~l~~~~~~~~~~~~~~~~ 123 (135)
T PF04246_consen 69 KAAFLVYLLPLLALIAGAVLGSYLGGS------------------ELWA----ILGGLLGLALGFLILRLFDRRLKK 123 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHH----HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 456677888888888888877766321 0111 123667788999999999988764
No 143
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=34.46 E-value=39 Score=40.38 Aligned_cols=67 Identities=19% Similarity=0.095 Sum_probs=38.0
Q ss_pred CCeeEEecCCCCHHH----------HHHHHHhCC-----CCCCCcccccCcccCCCCCc-----HHHHHHHHHhhhccCC
Q psy17085 56 TPLKICGDIHGQYLD----------LLMLFDYGK-----YPPKSRYLFLGDYVDRGSNS-----LETICLLLAYKIKYPG 115 (826)
Q Consensus 56 ~~i~viGDIHG~~~~----------L~~~l~~~g-----~~~~~~~vflGD~VDrG~~s-----~evl~ll~~lk~~~p~ 115 (826)
-.++-+.|+||++.. +..+++... ..++.-++..||.+.-.+.+ .-+++++-.+...
T Consensus 35 ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~s~~~~g~~~i~~mN~~g~D--- 111 (551)
T PRK09558 35 ITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLIGYD--- 111 (551)
T ss_pred EEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEhhhhcCCchhHHHHhcCCCC---
Confidence 358889999999752 223333321 12344567799998643321 2334555555432
Q ss_pred cEEEECCCChhh
Q psy17085 116 MFHLLRGNHECA 127 (826)
Q Consensus 116 ~v~~lrGNHE~~ 127 (826)
+ +..||||.-
T Consensus 112 -a-~tlGNHEFD 121 (551)
T PRK09558 112 -A-MAVGNHEFD 121 (551)
T ss_pred -E-EcccccccC
Confidence 3 445999953
No 144
>KOG3325|consensus
Probab=33.10 E-value=1.2e+02 Score=29.59 Aligned_cols=99 Identities=24% Similarity=0.278 Sum_probs=64.8
Q ss_pred eeEEecCCC--CHHHHHHHHHhCCCCCC-CcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhhC
Q psy17085 58 LKICGDIHG--QYLDLLMLFDYGKYPPK-SRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYG 134 (826)
Q Consensus 58 i~viGDIHG--~~~~L~~~l~~~g~~~~-~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~g 134 (826)
+.++||+|= ...+|-.-|++.-.|.. .+++++|++. |.|++++|..+- +.++++||--|..
T Consensus 3 vL~lgD~HiP~Ra~~Lp~KFkklLvPgki~hilctGNlc-----s~e~~dylk~l~----~dvhiVrGeFD~~------- 66 (183)
T KOG3325|consen 3 VLVLGDLHIPHRANDLPAKFKKLLVPGKIQHILCTGNLC-----SKESYDYLKTLS----SDVHIVRGEFDEN------- 66 (183)
T ss_pred EEEeccccCCccccccCHHHHhccCCCceeEEEEeCCcc-----hHHHHHHHHhhC----CCcEEEecccCcc-------
Confidence 678999984 34455555555555554 5688999964 668999998876 6799999987643
Q ss_pred ChHHHHHHHhHHHHHHHHHHHhcCCcEEEE--C-CcEEEEeCCCCCCcCCHHHHhhccCCCC
Q psy17085 135 FYDECKRRYNVKLWKTFTECFNCMPVAAIV--D-EKIFCCHGGLSPYLSSIDQIRRISRPTR 193 (826)
Q Consensus 135 f~~e~~~~~~~~~~~~~~~~f~~LPl~~~i--~-~~il~vHgGi~~~~~~l~~i~~i~r~~~ 193 (826)
..-|..-++ + -++-++||----.+.+.+.+.-+.|.++
T Consensus 67 ---------------------~~yP~~kvvtvGqfkIG~chGhqViP~gd~~sL~~LaRqld 107 (183)
T KOG3325|consen 67 ---------------------LKYPENKVVTVGQFKIGLCHGHQVIPWGDPESLALLARQLD 107 (183)
T ss_pred ---------------------ccCCccceEEeccEEEEeecCcEeecCCCHHHHHHHHHhcC
Confidence 112333232 2 2789999975444556666666666543
No 145
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=31.46 E-value=4e+02 Score=31.75 Aligned_cols=106 Identities=13% Similarity=0.170 Sum_probs=52.2
Q ss_pred HHHHhhccchhhhHHHHHH-HhhcCchHHHHHHHHHH--HHHHHHHHhHhhhHHHHhhhcccCCCccccccchhhHHH-H
Q psy17085 690 IMLLAVAGLVPFLVPCVDV-LLISGYTPTMELIQTTY--SSLLLTTLGGIHLTSHFRAILHNQVNKEDIPTILYPCTF-A 765 (826)
Q Consensus 690 ~~~Lg~aGliPF~~~~~~~-~~~~~~~~~~~~~~~~Y--~a~IlSFLgGv~WG~a~~~~~~~~~~~~~l~~sv~p~l~-a 765 (826)
...|.+.|.+||+..++.. .+.+........+.+.- --.|-+-+||...- .++....++..+|=-+++ -
T Consensus 20 ~~~l~~~~i~pf~~~p~i~~~~~g~~~~~~a~~~i~liaip~i~~~ig~~~f~-------~~p~~liklfygve~pi~~i 92 (952)
T TIGR02921 20 FASLTGLGILPFFGLPAILAAAIGDHPIEFALALILLIAIPAICIGIGGTCFL-------KNPTALIKLFYGVEAPIFFI 92 (952)
T ss_pred HHHHhhhhhhhccccHHHHHHHcccchHHHHHHHHHHHHHHHHHhhhcchhhh-------cCcHHHHHHHHcccchHHHH
Confidence 3468889999999844433 33333332222222222 22345566766522 222334556666543332 2
Q ss_pred HHHHh------hhH-----HHHHHHHHHHHHHHHHHhhhcc-cCChhHH
Q psy17085 766 WISLL------APS-----VGLVVNSTGLVLLLLADIQKNQ-ARPSWYK 802 (826)
Q Consensus 766 w~~ll------~~~-----~~l~~l~~gf~~~~~~d~~~~~-~~p~wy~ 802 (826)
.+.-| .|. .-+.+.+++|++++++-..... ..-.|..
T Consensus 93 ~l~~lflirel~p~~s~ili~~~i~i~a~~~~l~~g~~sr~~~glqw~~ 141 (952)
T TIGR02921 93 CLLRLFLIRELNPASSHILINIGIAIAAFAACLFGGVASRFKIGLQWLQ 141 (952)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHhhcchhcccchHHHHH
Confidence 22212 121 1344567788888887765543 2233643
No 146
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=30.48 E-value=58 Score=37.05 Aligned_cols=70 Identities=9% Similarity=0.011 Sum_probs=39.2
Q ss_pred CeeEEecCCCCHHHHHH---HHHhCC-CCCCCcccccCcccCCCCCcHH------HHHHHHHhhh-ccCCcEEEECCCCh
Q psy17085 57 PLKICGDIHGQYLDLLM---LFDYGK-YPPKSRYLFLGDYVDRGSNSLE------TICLLLAYKI-KYPGMFHLLRGNHE 125 (826)
Q Consensus 57 ~i~viGDIHG~~~~L~~---~l~~~g-~~~~~~~vflGD~VDrG~~s~e------vl~ll~~lk~-~~p~~v~~lrGNHE 125 (826)
+++++||-=+-...-.. .+.... -.+.+-+|-+||-++.|..++. ..+-++.-.. .-.-.++++.||||
T Consensus 28 ~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~~~~FVls~GDNF~~Gv~sv~Dp~f~~~FE~vY~~~s~~L~~Pwy~vLGNHD 107 (394)
T PTZ00422 28 RFASLGNWGTGSKQQKLVASYLKQYAKNERVTFLVSPGSNFPGGVDGLNDPKWKHCFENVYSEESGDMQIPFFTVLGQAD 107 (394)
T ss_pred EEEEEecCCCCchhHHHHHHHHHHHHHhCCCCEEEECCccccCCCCCccchhHHhhHhhhccCcchhhCCCeEEeCCccc
Confidence 68999995332222222 222221 2234567779999888877643 3344432211 00125899999999
Q ss_pred h
Q psy17085 126 C 126 (826)
Q Consensus 126 ~ 126 (826)
.
T Consensus 108 y 108 (394)
T PTZ00422 108 W 108 (394)
T ss_pred c
Confidence 6
No 147
>PRK11281 hypothetical protein; Provisional
Probab=30.15 E-value=2.5e+02 Score=36.50 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=13.0
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHHHh
Q psy17085 799 SWYKS-LRLMTTSTAVVTMVVMVAG 822 (826)
Q Consensus 799 ~wy~~-lR~~lT~~v~~~l~~~~~~ 822 (826)
.++.. +|..|+++-+++.++++++
T Consensus 682 ~~~~~~~~~~l~~~P~~l~~l~~~G 706 (1113)
T PRK11281 682 HTLRLVVRTVLTIAPIALIVLVVLG 706 (1113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 4777776655555444443
No 148
>KOG4721|consensus
Probab=28.66 E-value=7.7 Score=45.29 Aligned_cols=94 Identities=14% Similarity=0.053 Sum_probs=71.2
Q ss_pred CCccchheecccceeeecccccCCCccchheeccCCCccchhhccccccccccCCc--ceeeeeccccccCCCccceecc
Q psy17085 475 DPKLSTVLRKLKVKVWSQAECLDYDPEVEKQICAGGEKGNVDVKEDLRFEEVDSSR--RLTVCQFNDVHHSESFTTIWRN 552 (826)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 552 (826)
|-|-.+.+.|.+-+.|-+-|.--|=-=++-|||++|-+=+|.=++.. +-++. ..+..-+-+|+|-|..+++||.
T Consensus 162 dIKHLRkLkH~NII~FkGVCtqsPcyCIiMEfCa~GqL~~VLka~~~----itp~llv~Wsk~IA~GM~YLH~hKIIHRD 237 (904)
T KOG4721|consen 162 DIKHLRKLKHPNIITFKGVCTQSPCYCIIMEFCAQGQLYEVLKAGRP----ITPSLLVDWSKGIAGGMNYLHLHKIIHRD 237 (904)
T ss_pred hHHHHHhccCcceeeEeeeecCCceeEEeeeccccccHHHHHhccCc----cCHHHHHHHHHHhhhhhHHHHHhhHhhhc
Confidence 34456677777777776665555555689999999999887766544 22211 2234577899999999999999
Q ss_pred ccCCCCCCCCCCcccccccc
Q psy17085 553 FCSQQTKPGTKDTKEEDEFN 572 (826)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~ 572 (826)
.++-+...-..|.+|+-+||
T Consensus 238 LKSPNiLIs~~d~VKIsDFG 257 (904)
T KOG4721|consen 238 LKSPNILISYDDVVKISDFG 257 (904)
T ss_pred cCCCceEeeccceEEecccc
Confidence 99999999999999999995
No 149
>COG4393 Predicted membrane protein [Function unknown]
Probab=28.07 E-value=2.8e+02 Score=30.60 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhHhhhHHH
Q psy17085 723 TTYSSLLLTTLGGIHLTSH 741 (826)
Q Consensus 723 ~~Y~a~IlSFLgGv~WG~a 741 (826)
..+--++|||-+|.|||.-
T Consensus 85 ~~Fw~~lLsF~aaL~wg~~ 103 (405)
T COG4393 85 LNFWLLLLSFCAALHWGFM 103 (405)
T ss_pred HHHHHHHHHHHHHHhhccC
Confidence 3455669999999999973
No 150
>KOG2310|consensus
Probab=26.73 E-value=1.1e+02 Score=36.00 Aligned_cols=51 Identities=14% Similarity=0.170 Sum_probs=37.8
Q ss_pred CCCeeEEecCCC------------CHHHHHHHHHhCCCCCCCcccccCcccCCCCCcHHHHHH
Q psy17085 55 GTPLKICGDIHG------------QYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICL 105 (826)
Q Consensus 55 ~~~i~viGDIHG------------~~~~L~~~l~~~g~~~~~~~vflGD~VDrG~~s~evl~l 105 (826)
..+|.|-.|+|= .|..|.++|....-..-|.++.=||+..-..-|.+++--
T Consensus 13 tirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~ 75 (646)
T KOG2310|consen 13 TIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKPSRKTLHR 75 (646)
T ss_pred ceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccCCccHHHHHH
Confidence 357888889884 356788888876666667788899999888777665443
No 151
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=26.58 E-value=66 Score=40.06 Aligned_cols=67 Identities=19% Similarity=0.156 Sum_probs=39.6
Q ss_pred CCCeeEEecCCCCHHH----------------HHHHHHhCCC-CCCCcccccCcccCCCCCc------------------
Q psy17085 55 GTPLKICGDIHGQYLD----------------LLMLFDYGKY-PPKSRYLFLGDYVDRGSNS------------------ 99 (826)
Q Consensus 55 ~~~i~viGDIHG~~~~----------------L~~~l~~~g~-~~~~~~vflGD~VDrG~~s------------------ 99 (826)
.-+|+-..|+||++.. +..++++..- .++..++..||++---+.+
T Consensus 39 ~L~IL~TnDiHg~l~~~dy~~~~~~~~~Glar~AtlI~~~R~e~~ntlllD~GD~iqGspl~~~~~~~~~~~~~~~~~~~ 118 (780)
T PRK09418 39 NLRILETSDIHVNLMNYDYYQTKTDNKVGLVQTATLVNKAREEAKNSVLFDDGDALQGTPLGDYVANKINDPKKPVDPSY 118 (780)
T ss_pred EEEEEEEeecCCCCcCcCccccCCcCCCCHHHHHHHHHHHHHhCCCeEEEECCCCCCCchHHHHHhhccccccccccccc
Confidence 3468889999999743 2233333221 1234566699988533221
Q ss_pred -HHHHHHHHHhhhccCCcEEEECCCChh
Q psy17085 100 -LETICLLLAYKIKYPGMFHLLRGNHEC 126 (826)
Q Consensus 100 -~evl~ll~~lk~~~p~~v~~lrGNHE~ 126 (826)
.-+++++-.|... .+..||||.
T Consensus 119 ~~p~i~~mN~lgyD-----a~tlGNHEF 141 (780)
T PRK09418 119 THPLYRLMNLMKYD-----VISLGNHEF 141 (780)
T ss_pred chHHHHHHhccCCC-----EEecccccc
Confidence 2355655555533 478999994
No 152
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=25.84 E-value=5.5e+02 Score=25.90 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=38.4
Q ss_pred hhccchhhhH---------HHHHHHhhcCchHHHHHHHHHHHHHHHHHHhHhh-hHHHHhhhcccCCCccccccchhhHH
Q psy17085 694 AVAGLVPFLV---------PCVDVLLISGYTPTMELIQTTYSSLLLTTLGGIH-LTSHFRAILHNQVNKEDIPTILYPCT 763 (826)
Q Consensus 694 g~aGliPF~~---------~~~~~~~~~~~~~~~~~~~~~Y~a~IlSFLgGv~-WG~a~~~~~~~~~~~~~l~~sv~p~l 763 (826)
|..++.|++. +..++.+.-...+.....+++-++.+|.|=+=|- .=+++ +--........+.|++..+
T Consensus 48 ~~~~~~~~Il~~nDir~LiglIlFVLAl~s~p~ialimi~iAs~llP~PsLVIaYCl~m--qi~~~~~~~~~gMsIvcv~ 125 (189)
T PF05313_consen 48 GIKNLFPNILMNNDIRSLIGLILFVLALTSTPLIALIMIIIASLLLPFPSLVIAYCLSM--QIYNPGANNNVGMSIVCVI 125 (189)
T ss_pred cccccchHHHhcccHHHHHHHHHHHHhccCccHHHHHHHHHHHHHcCccHHHHHHHHHh--eeecCCCcceehhHHHHHH
Confidence 6666666654 2222233333445556666777777777733221 11222 2223334556666777666
Q ss_pred HHHHHHh
Q psy17085 764 FAWISLL 770 (826)
Q Consensus 764 ~aw~~ll 770 (826)
++-....
T Consensus 126 ~Si~ti~ 132 (189)
T PF05313_consen 126 MSIITII 132 (189)
T ss_pred HHHHHHH
Confidence 6665554
No 153
>PF14589 NrfD_2: Polysulfide reductase; PDB: 2VPZ_G 2VPW_G 2VPY_G 2VPX_G.
Probab=25.65 E-value=5e+02 Score=26.08 Aligned_cols=73 Identities=16% Similarity=0.101 Sum_probs=38.8
Q ss_pred cCCCchhHHHHhhccchhhhHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhHhhhHHHHhhhcccCCCccccccchhh
Q psy17085 683 LNQVPNHIMLLAVAGLVPFLVPCVDVLLISGYTPTMELIQTTYSSLLLTTLGGIHLTSHFRAILHNQVNKEDIPTILYP 761 (826)
Q Consensus 683 ~~~~p~~~~~Lg~aGliPF~~~~~~~~~~~~~~~~~~~~~~~Y~a~IlSFLgGv~WG~a~~~~~~~~~~~~~l~~sv~p 761 (826)
++=.|..+.+.|.-||---.....+..........+..+++.+|+|.||+=| .|+.. +-+++-|..+..+..|
T Consensus 80 LSFhP~SpIWWGaWGLal~fl~~gLLyLGkGp~r~law~Ll~fSlVaLaYPG-----~ALAv-NlnRPLWn~LlaglFP 152 (251)
T PF14589_consen 80 LSFHPTSPIWWGAWGLALSFLSGGLLYLGKGPQRFLAWALLLFSLVALAYPG-----MALAV-NLNRPLWNGLLAGLFP 152 (251)
T ss_dssp SS--TT-HHHHHHHHHHHHHHHHHHHHTT-S-SSTCHHHHHHHHHHHHHHHH-----HHHHT--TTSTTS-TTHHHHHH
T ss_pred eecCCCCchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHcCcc-----HHHHH-hccchhHHHHHHHHhh
Confidence 3445777777888887543333334444444444456677788999998864 55542 3344445555544444
No 154
>PLN02434 fatty acid hydroxylase
Probab=25.59 E-value=7.9e+02 Score=25.99 Aligned_cols=59 Identities=14% Similarity=0.235 Sum_probs=32.4
Q ss_pred cCCCccccc----cchhhHHHHHHHH--hh-hHHHHHHHHHHHHHHHHHHhhhcc-----cCChhHHHHHH
Q psy17085 748 NQVNKEDIP----TILYPCTFAWISL--LA-PSVGLVVNSTGLVLLLLADIQKNQ-----ARPSWYKSLRL 806 (826)
Q Consensus 748 ~~~~~~~l~----~sv~p~l~aw~~l--l~-~~~~l~~l~~gf~~~~~~d~~~~~-----~~p~wy~~lR~ 806 (826)
.+.+..|++ .++++++..|..+ ++ +..+..+++.+.+..+.+|..-.- ..+.|++.||.
T Consensus 129 ~P~D~~rLv~PP~~~~~l~~~~~~l~~~~~~~~~a~~~~~G~l~gYl~Yd~~Hy~lH~~~p~~~~~r~lkr 199 (237)
T PLN02434 129 HPMDGLRLVFPPAATAILCVPFWNLIALFATPATAPALFGGGLLGYVMYDCTHYFLHHGQPSTDVLRNLKK 199 (237)
T ss_pred CCCCCCCeecCcHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 334455554 3455555556432 23 334666666667777788864221 33578888775
No 155
>PF13258 DUF4049: Domain of unknown function (DUF4049)
Probab=23.23 E-value=2.2e+02 Score=29.89 Aligned_cols=13 Identities=38% Similarity=0.478 Sum_probs=11.3
Q ss_pred CcEEEECCCChhh
Q psy17085 115 GMFHLLRGNHECA 127 (826)
Q Consensus 115 ~~v~~lrGNHE~~ 127 (826)
.+|++|-||||..
T Consensus 128 knvvvlagnhein 140 (318)
T PF13258_consen 128 KNVVVLAGNHEIN 140 (318)
T ss_pred cceEEEecCceec
Confidence 6899999999964
No 156
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=22.94 E-value=2e+02 Score=30.76 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=27.6
Q ss_pred cccccCcccCCCCC------------------cHHHHHHHHHhhhccC--CcEEEECCCChhhhhHh
Q psy17085 85 RYLFLGDYVDRGSN------------------SLETICLLLAYKIKYP--GMFHLLRGNHECANINK 131 (826)
Q Consensus 85 ~~vflGD~VDrG~~------------------s~evl~ll~~lk~~~p--~~v~~lrGNHE~~~~~~ 131 (826)
++|+.||.|+.-.+ ..+.+..+-.+-..-+ -.|.++.||||......
T Consensus 45 rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~l~~l~~~i~V~imPG~~Dp~~~~l 111 (257)
T cd07387 45 RLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAVKELDNFLSQLASSVPVDLMPGEFDPANHSL 111 (257)
T ss_pred EEEEECCcccccccccchhhhhhccccccchhhHHHHHHHHHHHHhhhcCCeEEECCCCCCcccccC
Confidence 68899999996432 2222333322211111 35889999999765543
No 157
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=22.79 E-value=1.7e+02 Score=25.26 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=20.5
Q ss_pred CCccccccchhhHHHHHHHHhhhHH--HHHHHHHHHHHHH
Q psy17085 750 VNKEDIPTILYPCTFAWISLLAPSV--GLVVNSTGLVLLL 787 (826)
Q Consensus 750 ~~~~~l~~sv~p~l~aw~~ll~~~~--~l~~l~~gf~~~~ 787 (826)
....+.+++++..++|+..+..... ...+.++||++.+
T Consensus 37 ~~~r~~~~~~~~~v~gl~llv~G~~~~~~~~~v~G~~v~~ 76 (82)
T PF11239_consen 37 PSRRRRVLGVLLVVVGLALLVAGVVLSQPPLGVAGFVVMV 76 (82)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3445566777777777666553221 2233445665554
No 158
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=22.32 E-value=6.9e+02 Score=28.67 Aligned_cols=39 Identities=23% Similarity=0.142 Sum_probs=27.4
Q ss_pred cCCceEEEEeCcccccCcceeeeecCCCcccccCCCCCEEEEEecC
Q psy17085 260 IKSDIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305 (826)
Q Consensus 260 ~~nDIALLkL~~pv~~~~~V~PIcLp~~~~~~~~~~g~~c~vsGWG 305 (826)
...|+|||++..+ ..+.++.|.... ....|..+.+.|+.
T Consensus 103 ~~~DlAllkv~~~----~~~~~~~l~~~~---~~~~G~~v~aiG~p 141 (428)
T TIGR02037 103 PRTDIAVLKIDAK----KNLPVIKLGDSD---KLRVGDWVLAIGNP 141 (428)
T ss_pred CCCCEEEEEecCC----CCceEEEccCCC---CCCCCCEEEEEECC
Confidence 4679999999754 345667775433 34568999998874
No 159
>KOG0918|consensus
Probab=21.16 E-value=2.6 Score=46.76 Aligned_cols=95 Identities=8% Similarity=-0.187 Sum_probs=69.1
Q ss_pred CcccccCcccCCCCCcHHHHHHHHHhhhccCCcEEEECCCChhhhhHhhhCChHHHHHHH----hHHHHHHHHHHHhcCC
Q psy17085 84 SRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRY----NVKLWKTFTECFNCMP 159 (826)
Q Consensus 84 ~~~vflGD~VDrG~~s~evl~ll~~lk~~~p~~v~~lrGNHE~~~~~~~~gf~~e~~~~~----~~~~~~~~~~~f~~LP 159 (826)
-..|+++++.+++.+.++.+-+-+..+..+-.+....++||+.. ++++.++.-.- ...+++..++-+..++
T Consensus 49 latVdvdp~s~t~c~vI~r~~~~~~gdelhhsgwn~~ssc~~~~-----~~~R~~LVlp~l~S~riyvid~~~ep~~~~l 123 (476)
T KOG0918|consen 49 LATVDVDPSSPTYCQVIHRLPMPYLGDELHHSGWNSCSSCHGDS-----SFKRRYLVLPSLNSGRIYVIDVKTEPRKPSL 123 (476)
T ss_pred eeEEecCCCCCcceeeEEEeccCcccchhcccchhhhhhhccCc-----chhhhheeecccccCceEEEEeccCcCccce
Confidence 35889999999999999999999998888888888999999543 33332221111 1234456677777888
Q ss_pred cEEEECCcEEEEeCCCCCCcCCHHH
Q psy17085 160 VAAIVDEKIFCCHGGLSPYLSSIDQ 184 (826)
Q Consensus 160 l~~~i~~~il~vHgGi~~~~~~l~~ 184 (826)
...+.+ ++++.||+..|.......
T Consensus 124 ~k~i~~-~il~~~~l~~Pht~hcla 147 (476)
T KOG0918|consen 124 EKTIDP-DILEKTGLACPHTSHCLA 147 (476)
T ss_pred eeeech-hhHhhcCCcCCccccccc
Confidence 887755 999999999997654333
No 160
>PRK00068 hypothetical protein; Validated
Probab=20.93 E-value=6.3e+02 Score=32.33 Aligned_cols=13 Identities=15% Similarity=-0.440 Sum_probs=6.9
Q ss_pred ccchhhHHHHHHH
Q psy17085 756 PTILYPCTFAWIS 768 (826)
Q Consensus 756 ~~sv~p~l~aw~~ 768 (826)
+.+++..+.||.-
T Consensus 218 l~~~~~ll~a~~y 230 (970)
T PRK00068 218 LAGLLMLLKAVGY 230 (970)
T ss_pred HHHHHHHHHHHHH
Confidence 3355555566643
No 161
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=20.59 E-value=1e+03 Score=27.48 Aligned_cols=46 Identities=13% Similarity=0.278 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHHHHHHHHHh
Q psy17085 775 GLVVNSTGLVLLLLADIQKNQARPSWYKSLRLMTTSTAVVTMVVMVAG 822 (826)
Q Consensus 775 ~l~~l~~gf~~~~~~d~~~~~~~p~wy~~lR~~lT~~v~~~l~~~~~~ 822 (826)
+++++++|..+.++..+.- ..+.||..-|...+..+++....+++.
T Consensus 421 ~~~~~~~g~~~y~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (473)
T TIGR00905 421 GFILYAPGIIFYGRARKER--GKHVFNKKEILIATIIVIAAIIAIWLL 466 (473)
T ss_pred HHHHHHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667766666555432 345799999999998888777666554
No 162
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=20.40 E-value=9e+02 Score=29.04 Aligned_cols=42 Identities=14% Similarity=0.092 Sum_probs=19.3
Q ss_pred hhHHHHhh-ccch------hhhHHHHHHHhhcCchHHHHHHHHHHHHHH
Q psy17085 688 NHIMLLAV-AGLV------PFLVPCVDVLLISGYTPTMELIQTTYSSLL 729 (826)
Q Consensus 688 ~~~~~Lg~-aGli------PF~~~~~~~~~~~~~~~~~~~~~~~Y~a~I 729 (826)
.-+.++|+ .|++ |+++++++.............++.+||...
T Consensus 290 ~gaf~~G~l~~l~~~PC~~p~L~~~L~~aa~tg~~~~g~~~l~~~gLG~ 338 (571)
T PRK00293 290 GGVFVMGAISGLICSPCTTAPLSGALLYIAQSGDLLLGGLTLYLLALGM 338 (571)
T ss_pred HhHHHHHHHHHHHhCCCchHHHHHHHHHHHccCcHHHHHHHHHHHHHHH
Confidence 34566665 4556 444444433332222222244455666554
No 163
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=20.36 E-value=1e+03 Score=25.02 Aligned_cols=88 Identities=13% Similarity=0.129 Sum_probs=46.8
Q ss_pred hHhhhHHHHhh---hcccCCCccccccchhhHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHh--hhccc-CCh
Q psy17085 734 GGIHLTSHFRA---ILHNQVNKEDIPTILYPCTFAWISLLAP--------SVGLVVNSTGLVLLLLADI--QKNQA-RPS 799 (826)
Q Consensus 734 gGv~WG~a~~~---~~~~~~~~~~l~~sv~p~l~aw~~ll~~--------~~~l~~l~~gf~~~~~~d~--~~~~~-~p~ 799 (826)
=++-||.|+.. ..-.+. ..+...-++-.++||.++..- ..++.++.+|-++- .+-. ...+. .=.
T Consensus 121 ~~iiW~lal~Gi~~kl~~~~-~~r~ls~~~yl~mGw~~v~~~~~l~~~l~~~~~~~l~~GGv~Y-svG~ifY~~~~~~~~ 198 (226)
T COG1272 121 LGLIWGLALAGILFKLFFKK-RFRKLSLVLYLAMGWLGLIVIKPLIAKLGLIGLVLLALGGVLY-SVGAIFYVLRIDRIP 198 (226)
T ss_pred HHHHHHHHHHHHhhhhhccC-cCceeeehhhHHHHHHHHHHHHHHHHhCchHHHHHHHHHhHHh-eeeeEEEEEeeccCC
Confidence 35678887754 122222 233344556667899988721 22333333332211 1111 11110 123
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q psy17085 800 WYKSLRLMTTSTAVVTMVVMVAGK 823 (826)
Q Consensus 800 wy~~lR~~lT~~v~~~l~~~~~~~ 823 (826)
.+...-...++++.+||..++...
T Consensus 199 ~~H~iwH~fVv~ga~~Hf~ai~~~ 222 (226)
T COG1272 199 YSHAIWHLFVVGGAACHFIAILFY 222 (226)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888899999999999887654
No 164
>PF04070 DUF378: Domain of unknown function (DUF378); InterPro: IPR007211 These are predicted membrane proteins of unknown function. The majority of the proteins have two predicted transmembrane regions.
Probab=20.30 E-value=1e+02 Score=25.45 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhHhhhHHH
Q psy17085 724 TYSSLLLTTLGGIHLTSH 741 (826)
Q Consensus 724 ~Y~a~IlSFLgGv~WG~a 741 (826)
-+-|.+|..+||+.||+-
T Consensus 5 d~ialiLvIIGalNWGli 22 (62)
T PF04070_consen 5 DKIALILVIIGALNWGLI 22 (62)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 367889999999999974
Done!