RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17085
(826 letters)
>gnl|CDD|163657 cd07414, MPP_PP1_PPKL, PP1, PPKL (PP1 and kelch-like) enzymes, and
related proteins, metallophosphatase domain. PP1
(protein phosphatase type 1) is a serine/threonine
phosphatase that regulates many cellular processes
including: cell-cycle progression, protein synthesis,
muscle contraction, carbohydrate metabolism,
transcription and neuronal signaling, through its
interaction with at least 180 known targeting proteins.
PP1 occurs in all tissues and regulates many pathways,
ranging from cell-cycle progression to carbohydrate
metabolism. Also included here are the PPKL (PP1 and
kelch-like) enzymes including the PPQ, PPZ1, and PPZ2
fungal phosphatases. These PPKLs have a large
N-terminal kelch repeat in addition to a C-terminal
phosphoesterase domain. The PPP (phosphoprotein
phosphatase) family, to which PP1 belongs, is one of two
known protein phosphatase families specific for serine
and threonine. The PPP family also includes: PP2A, PP2B
(calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE,
PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain
is defined by three conserved motifs (-GDXHG-, -GDXVDRG-
and -GNHE-). The PPP enzyme family is ancient with
members found in all eukaryotes, and in most bacterial
and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 293
Score = 403 bits (1038), Expect = e-135
Identities = 154/204 (75%), Positives = 178/204 (87%), Gaps = 1/204 (0%)
Query: 8 NLDSIINRLIDI-DARSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHG 66
++DSII RL+++ +R G+NV L E+EI LC SREIFLS+P+LLEL PLKICGDIHG
Sbjct: 1 DIDSIIERLLEVRGSRPGKNVQLTEAEIRGLCLKSREIFLSQPILLELEAPLKICGDIHG 60
Query: 67 QYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHEC 126
QY DLL LF+YG +PP+S YLFLGDYVDRG SLETICLLLAYKIKYP F LLRGNHEC
Sbjct: 61 QYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 120
Query: 127 ANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIR 186
A+IN++YGFYDECKRRYN+KLWKTFT+CFNC+PVAAI+DEKIFC HGGLSP L S++QIR
Sbjct: 121 ASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAIIDEKIFCMHGGLSPDLQSMEQIR 180
Query: 187 RISRPTRVPEQGLLCDLLWSDPEK 210
RI RPT VP+QGLLCDLLWSDP+K
Sbjct: 181 RIMRPTDVPDQGLLCDLLWSDPDK 204
>gnl|CDD|185658 PTZ00480, PTZ00480, serine/threonine-protein phosphatase;
Provisional.
Length = 320
Score = 337 bits (864), Expect = e-109
Identities = 145/205 (70%), Positives = 177/205 (86%), Gaps = 1/205 (0%)
Query: 7 LNLDSIINRLIDI-DARSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKICGDIH 65
+++D+II RL+ + ++ G+NVNL E+E+ LC +R+IF+S+P+LLEL PLKICGD+H
Sbjct: 9 IDVDNIIERLLSVRGSKPGKNVNLTEAEVRGLCIKARDIFISQPILLELEAPLKICGDVH 68
Query: 66 GQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHE 125
GQY DLL LF+YG YPP+S YLFLGDYVDRG SLETICLLLAYKIKYP F LLRGNHE
Sbjct: 69 GQYFDLLRLFEYGGYPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHE 128
Query: 126 CANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQI 185
CA+IN++YGFYDECKRRY +KLWKTFT+CFNC+PVAA++DEKI C HGGLSP LS+++QI
Sbjct: 129 CASINRIYGFYDECKRRYTIKLWKTFTDCFNCLPVAALIDEKILCMHGGLSPELSNLEQI 188
Query: 186 RRISRPTRVPEQGLLCDLLWSDPEK 210
RRI RPT VP+ GLLCDLLWSDP+K
Sbjct: 189 RRIMRPTDVPDTGLLCDLLWSDPDK 213
>gnl|CDD|197547 smart00156, PP2Ac, Protein phosphatase 2A homologues, catalytic
domain. Large family of serine/threonine phosphatases,
that includes PP1, PP2A and PP2B (calcineurin) family
members.
Length = 271
Score = 291 bits (746), Expect = 2e-92
Identities = 98/182 (53%), Positives = 133/182 (73%)
Query: 29 LHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYPPKSRYLF 88
L++ EI L R +EIF EP L+E+ P+ +CGDIHGQ+ DLL LFD PP++ Y+F
Sbjct: 1 LYKEEILELLREVKEIFRQEPNLVEVSAPVTVCGDIHGQFDDLLRLFDKNGQPPETNYVF 60
Query: 89 LGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRYNVKLW 148
LGDYVDRG S+E I LL A KI YP LLRGNHE ++N++YGFYDECKR+Y +++
Sbjct: 61 LGDYVDRGPFSIEVILLLFALKILYPNRIVLLRGNHESRSMNEIYGFYDECKRKYGERIY 120
Query: 149 KTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDP 208
+ F E F+ +P+AA+++ KI C HGGLSP L+++D IR++ RP P+ GLL DLLWSDP
Sbjct: 121 EKFNEAFSWLPLAALINGKILCMHGGLSPDLTTLDDIRKLKRPQEPPDDGLLIDLLWSDP 180
Query: 209 EK 210
++
Sbjct: 181 DQ 182
>gnl|CDD|163658 cd07415, MPP_PP2A_PP4_PP6, PP2A, PP4, and PP6 phosphoprotein
phosphatases, metallophosphatase domain. PP2A-like
family of phosphoprotein phosphatases (PPP's) including
PP4 and PP6. PP2A (Protein phosphatase 2A) is a
critical regulator of many cellular activities. PP2A
comprises about 1% of total cellular proteins. PP2A,
together with protein phosphatase 1 (PP1), accounts for
more than 90% of all serine/threonine phosphatase
activities in most cells and tissues. The PP2A subunit
in addition to having a catalytic domain homologous to
PP1, has a unique C-terminal tail, containing a motif
that is conserved in the catalytic subunits of all
PP2A-like phosphatases including PP4 and PP6, and has an
important role in PP2A regulation. The PP2A-like family
of phosphatases all share a similar heterotrimeric
architecture, that includes: a 65kDa scaffolding subunit
(A), a 36kDa catalytic subunit (C), and one of 18
regulatory subunits (B). The PPP (phosphoprotein
phosphatase) family, to which PP2A belongs, is one of
two known protein phosphatase families specific for
serine and threonine. The PPP family also includes:
PP1, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC,
PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic
domain is defined by three conserved motifs (-GDXHG-,
-GDXVDRG- and -GNHE-). The PPP enzyme family is ancient
with members found in all eukaryotes, and in most
bacterial and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 285
Score = 277 bits (712), Expect = 3e-87
Identities = 103/203 (50%), Positives = 137/203 (67%), Gaps = 8/203 (3%)
Query: 8 NLDSIINRLIDIDARSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQ 67
+LD I +L + L ESE+ +LC ++EI + E + + +P+ +CGDIHGQ
Sbjct: 1 DLDKWIEQL-------KKCELLPESEVKSLCEKAKEILVKESNVQRVRSPVTVCGDIHGQ 53
Query: 68 YLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECA 127
+ DLL LF G PP + YLFLGDYVDRG S+ET LLLA K++YP LLRGNHE
Sbjct: 54 FYDLLELFRVGGDPPDTNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESR 113
Query: 128 NINKVYGFYDECKRRY-NVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIR 186
I +VYGFYDEC R+Y N +WK T+ F+ +P+AA++D +IFC HGGLSP + ++DQIR
Sbjct: 114 QITQVYGFYDECLRKYGNANVWKYCTDLFDYLPLAALIDNQIFCVHGGLSPSIDTLDQIR 173
Query: 187 RISRPTRVPEQGLLCDLLWSDPE 209
I R VP +G +CDLLWSDP+
Sbjct: 174 AIDRFQEVPHEGPMCDLLWSDPD 196
>gnl|CDD|140271 PTZ00244, PTZ00244, serine/threonine-protein phosphatase PP1;
Provisional.
Length = 294
Score = 271 bits (693), Expect = 2e-84
Identities = 114/215 (53%), Positives = 153/215 (71%), Gaps = 1/215 (0%)
Query: 11 SIINRLIDI-DARSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYL 69
++I +++ + R+ R + + E +I A+ REIF+S+PMLLE+ P+++CGD HGQY
Sbjct: 6 TLIEKMLTVKGNRTQRQILIREEDIRAVLTEVREIFMSQPMLLEIRPPVRVCGDTHGQYY 65
Query: 70 DLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANI 129
DLL +F+ +PP S YLFLGDYVDRG +S+ETI L YKI YP F LLRGNHECA+I
Sbjct: 66 DLLRIFEKCGFPPYSNYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASI 125
Query: 130 NKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIRRIS 189
NK+YGF+D+ KRRYN+KL+K FT+ FN MPV ++ EKI C HGGLSP L+S+ + I
Sbjct: 126 NKMYGFFDDVKRRYNIKLFKAFTDVFNTMPVCCVISEKIICMHGGLSPDLTSLASVNEIE 185
Query: 190 RPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRF 224
RP VP++G+LCDLLW+DPE L R V +
Sbjct: 186 RPCDVPDRGILCDLLWADPEDEVRGFLESDRGVSY 220
>gnl|CDD|163659 cd07416, MPP_PP2B, PP2B, metallophosphatase domain. PP2B
(calcineurin) is a unique serine/threonine protein
phosphatase in its regulation by a second messenger
(calcium and calmodulin). PP2B is involved in many
biological processes including immune responses, the
second messenger cAMP pathway, sodium/potassium ion
transport in the nephron, cell cycle progression in
lower eukaryotes, cardiac hypertrophy, and memory
formation. PP2B is highly conserved from yeast to
humans, but is absent from plants. PP2B is a
heterodimer consisting of a catalytic subunit (CnA) and
a regulatory subunit (CnB); CnB contains four Ca2+
binding motifs referred to as EF hands. The PPP
(phosphoprotein phosphatase) family, to which PP2B
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP4, PP5, PP6, PP7,
Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 305
Score = 226 bits (579), Expect = 7e-68
Identities = 87/187 (46%), Positives = 119/187 (63%), Gaps = 3/187 (1%)
Query: 22 RSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYP 81
R GR L E + + EI EP LL + P+ +CGDIHGQ+ DLL LF+ G P
Sbjct: 12 REGR---LSEEDALRIITEGAEILRQEPNLLRIEAPVTVCGDIHGQFYDLLKLFEVGGSP 68
Query: 82 PKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKR 141
+RYLFLGDYVDRG S+E + L A KI YP LLRGNHEC ++ + + F ECK
Sbjct: 69 ANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKI 128
Query: 142 RYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLC 201
+Y+ +++ E F+C+P+AA+++++ C HGGLSP L ++D IR++ R P G +C
Sbjct: 129 KYSERVYDACMEAFDCLPLAALMNQQFLCVHGGLSPELKTLDDIRKLDRFREPPAFGPMC 188
Query: 202 DLLWSDP 208
DLLWSDP
Sbjct: 189 DLLWSDP 195
>gnl|CDD|163662 cd07419, MPP_Bsu1_C, Arabidopsis thaliana Bsu1 phosphatase and
related proteins, C-terminal metallophosphatase domain.
Bsu1 encodes a nuclear serine-threonine protein
phosphatase found in plants and protozoans. Bsu1 has a
C-terminal phosphatase domain and an N-terminal
Kelch-repeat domain. Bsu1 is preferentially expressed
in elongating plant cells. It modulates the
phosphorylation state of Bes1, a transcriptional
regulator phosphorylated by the glycogen synthase kinase
Bin2, as part of a steroid hormone signal transduction
pathway. The PPP (phosphoprotein phosphatase) family,
to which Bsu1 belongs, is one of two known protein
phosphatase families specific for serine and threonine.
The PPP family also includes: PP1, PP2A, PP2B
(calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE,
PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain
is defined by three conserved motifs (-GDXHG-, -GDXVDRG-
and -GNHE-). The PPP enzyme family is ancient with
members found in all eukaryotes, and in most bacterial
and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 311
Score = 226 bits (577), Expect = 2e-67
Identities = 91/191 (47%), Positives = 119/191 (62%), Gaps = 15/191 (7%)
Query: 33 EISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYPPKSR------- 85
EI LC + +IF EPM+L L P+KI GDIHGQ+ DL+ LFD P
Sbjct: 25 EILELCDAAEDIFKQEPMVLRLRAPIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGDIEYI 84
Query: 86 -YLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRYN 144
YLFLGDYVDRGSNSLETICLLLA K+KYP HL+RGNHE +IN ++GF +ECK R
Sbjct: 85 DYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLG 144
Query: 145 ------VKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIRRISRP-TRVPEQ 197
+W+ F +P+AAI+++KI C HGG+ ++ + +I + RP T +
Sbjct: 145 EDPNDGDSVWRRINRLFEWLPLAAIIEDKILCMHGGIGRSINHVSEIEDLKRPLTMEFGE 204
Query: 198 GLLCDLLWSDP 208
++ DLLWSDP
Sbjct: 205 QVVMDLLWSDP 215
>gnl|CDD|173488 PTZ00239, PTZ00239, serine/threonine protein phosphatase 2A;
Provisional.
Length = 303
Score = 222 bits (567), Expect = 3e-66
Identities = 89/182 (48%), Positives = 123/182 (67%), Gaps = 1/182 (0%)
Query: 29 LHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKYPPKSRYLF 88
L E ++ +C ++EIFL E + + P+ +CGDIHGQ+ DL LF G P + Y+F
Sbjct: 16 LPERDLKLICERAKEIFLEESNVQPVRAPVNVCGDIHGQFYDLQALFKEGGDIPNANYIF 75
Query: 89 LGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRY-NVKL 147
+GD+VDRG NS+ET+ LL K+KYPG LLRGNHE +VYGFY+E R+Y N
Sbjct: 76 IGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFYEEILRKYGNSNP 135
Query: 148 WKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSD 207
W+ F + F+C+P+AA+++ +I C HGGLSP + +IDQIR I R +P +G CDL+WSD
Sbjct: 136 WRLFMDVFDCLPLAALIEGQILCVHGGLSPDMRTIDQIRTIDRKIEIPHEGPFCDLMWSD 195
Query: 208 PE 209
PE
Sbjct: 196 PE 197
>gnl|CDD|163660 cd07417, MPP_PP5_C, PP5, C-terminal metallophosphatase domain.
Serine/threonine protein phosphatase-5 (PP5) is a member
of the PPP gene family of protein phosphatases that is
highly conserved among eukaryotes and widely expressed
in mammalian tissues. PP5 has a C-terminal phosphatase
domain and an extended N-terminal TPR (tetratricopeptide
repeat) domain containing three TPR motifs. The PPP
(phosphoprotein phosphatase) family, to which PP5
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 316
Score = 205 bits (525), Expect = 6e-60
Identities = 79/176 (44%), Positives = 114/176 (64%), Gaps = 6/176 (3%)
Query: 42 REIFLSEPMLLELGTP----LKICGDIHGQYLDLLMLFDYGKYP-PKSRYLFLGDYVDRG 96
+E+ P L+E+ P + +CGD HGQ+ DLL +F+ P + YLF GD+VDRG
Sbjct: 42 KELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDFVDRG 101
Query: 97 SNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRYNVKLWKTFTECFN 156
S S+E I L A+K+ YP FHL RGNHE N+NK+YGF E K +YN +++ F+E FN
Sbjct: 102 SFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKYNEQMFDLFSEVFN 161
Query: 157 CMPVAAIVDEKIFCCHGGL-SPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPEKA 211
+P+A +++ K+ HGGL S ++D IR+I R + P+ GL+C+LLWSDP+
Sbjct: 162 WLPLAHLINGKVLVVHGGLFSDDGVTLDDIRKIDRFRQPPDSGLMCELLWSDPQPQ 217
>gnl|CDD|163613 cd00144, MPP_PPP_family, phosphoprotein phosphatases of the
metallophosphatase superfamily, metallophosphatase
domain. The PPP (phosphoprotein phosphatase) family is
one of two known protein phosphatase families specific
for serine and threonine. This family includes: PP1,
PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 225
Score = 187 bits (477), Expect = 2e-54
Identities = 72/160 (45%), Positives = 94/160 (58%), Gaps = 17/160 (10%)
Query: 60 ICGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHL 119
+ GDIHG DLL L + +PP + +FLGDYVDRG +S+E I LLLA KI P L
Sbjct: 2 VIGDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVIL 60
Query: 120 LRGNHECANINKVYGFYDE---------CKRRYNVKLWKTFTECFNCMPVAAIVD-EKIF 169
LRGNHE +N +YGFYDE ++ LW+ F + F +P+AA+++ +K+
Sbjct: 61 LRGNHEDMLLNFLYGFYDEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVL 120
Query: 170 CCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPE 209
C HGGLSP L +QI+ PE L DLLWSDP
Sbjct: 121 CVHGGLSPGLPLEEQIKEE------PEDQLPEDLLWSDPL 154
>gnl|CDD|163663 cd07420, MPP_RdgC, Drosophila melanogaster RdgC and related
proteins, metallophosphatase domain. RdgC (retinal
degeneration C) is a vertebrate serine-threonine protein
phosphatase that is required to prevent light-induced
retinal degeneration. In addition to its catalytic
domain, RdgC has two C-terminal EF hands. Homologs of
RdgC include the human phosphatases protein phosphatase
with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1
transcripts are present at low levels in the retina,
PPEF-2 transcripts and PPEF-2 protein are present at
high levels in photoreceptors. The PPP (phosphoprotein
phosphatase) family, to which RdgC belongs, is one of
two known protein phosphatase families specific for
serine and threonine. The PPP family also includes:
PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic
domain is defined by three conserved motifs (-GDXHG-,
-GDXVDRG- and -GNHE-). The PPP enzyme family is ancient
with members found in all eukaryotes, and in most
bacterial and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 321
Score = 125 bits (316), Expect = 2e-31
Identities = 69/214 (32%), Positives = 105/214 (49%), Gaps = 34/214 (15%)
Query: 29 LHESEISALCRVSREIFLSEPMLLELGT----PLKICGDIHGQYLDLLMLFDYGKYP-PK 83
LH + + R +R++ P + + T + ICGD+HG+ DL ++F P P+
Sbjct: 20 LHAKYVLLILREARKVLKQLPNISRVSTSISKQVTICGDLHGKLDDLFLIFYKNGLPSPE 79
Query: 84 SRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRY 143
+ Y+F GD+VDRG S+E + +L A+ + YP HL RGNHE +N YGF E +Y
Sbjct: 80 NPYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKY 139
Query: 144 NV---KLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPY--LSSIDQIRR----------- 187
+ K+ + + F+ +P+A I+D KI HGG+S L +D+I R
Sbjct: 140 KLHGKKILRLLEDVFSWLPLATIIDNKILVVHGGISDSTDLDLLDKIDRHKYVSVLRPPL 199
Query: 188 -------------ISRPTRVPEQGLLCDLLWSDP 208
S P E + D+LWSDP
Sbjct: 200 RKGMEELTGEEEDPSEPLDKTEWRQILDILWSDP 233
>gnl|CDD|215750 pfam00149, Metallophos, Calcineurin-like phosphoesterase. This
family includes a diverse range of phosphoesterases,
including protein phosphoserine phosphatases,
nucleotidases, sphingomyelin phosphodiesterases and
2'-3' cAMP phosphodiesterases as well as nucleases such
as bacterial SbcD or yeast MRE11. The most conserved
regions in this superfamily centre around the metal
chelating residues.
Length = 185
Score = 114 bits (286), Expect = 4e-29
Identities = 57/163 (34%), Positives = 74/163 (45%), Gaps = 28/163 (17%)
Query: 57 PLKICGDIHGQYLDL---LMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKY 113
+ + GD+HG DL L+L + P LFLGD VDRG SLE + LL A K+K
Sbjct: 1 RILVIGDLHGGLDDLDLLLLLLELLGEPKPDLVLFLGDLVDRGPPSLEVLALLFALKLKA 60
Query: 114 PGMFHLLRGNHECANINKVYGFYDECKRR-------------------------YNVKLW 148
PG +L+RGNH+ + N GFY EC +W
Sbjct: 61 PGPVYLVRGNHDFDSGNSELGFYLECAGLPYVLGNGDVSNGTVEIIGLSSLYGKGGGLVW 120
Query: 149 KTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIRRISRP 191
+ F E + + +AA+VD KI HG LSP L S D I
Sbjct: 121 EEFLELLDLLLLAALVDGKILLVHGPLSPSLDSGDDIYLFGEE 163
>gnl|CDD|163661 cd07418, MPP_PP7, PP7, metallophosphatase domain. PP7 is a plant
phosphoprotein phosphatase that is highly expressed in a
subset of stomata and thought to play an important role
in sensory signaling. PP7 acts as a positive regulator
of signaling downstream of cryptochrome blue light
photoreceptors. PP7 also controls amplification of
phytochrome signaling, and interacts with
nucleotidediphosphate kinase 2 (NDPK2), a positive
regulator of phytochrome signalling. In addition, PP7
interacts with heat shock transcription factor HSF and
up-regulates protective heat shock proteins. PP7 may
also play a role in salicylic acid-dependent defense
signaling. The PPP (phosphoprotein phosphatase) family,
to which PP7 belongs, is one of two known protein
phosphatase families specific for serine and threonine.
The PPP family also includes: PP2A, PP2B (calcineurin),
PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 377
Score = 117 bits (296), Expect = 2e-28
Identities = 66/221 (29%), Positives = 103/221 (46%), Gaps = 45/221 (20%)
Query: 32 SEISALCRVSREIFLSEPMLLELGTPLKIC-----GDIHGQYLDLLMLFDYGKYPPKSR- 85
+ +L + +I EP + + +C GD+HGQ D+L L + +P ++R
Sbjct: 38 NVFDSLVLTAHKILHREPNCVRI-DVEDVCEVVVVGDVHGQLHDVLFLLEDAGFPDQNRF 96
Query: 86 YLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKRRYN- 144
Y+F GDYVDRG+ LET LLL++K+ P +LLRGNHE +YGF E +Y
Sbjct: 97 YVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGD 156
Query: 145 --VKLWKTFTECFNCMPVAAIVDEKIFCCHGGL--------------------------- 175
+++ CF +P+A+I+ +++ HGGL
Sbjct: 157 KGKHVYRKCLGCFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESE 216
Query: 176 SPYLSSIDQIRRISRPTRV---PEQGLLC---DLLWSDPEK 210
S L ++D + + R V P +G D+LWSDP
Sbjct: 217 SLKLGTLDDLMKARR--SVLDPPGEGSNLIPGDVLWSDPSL 255
>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease. Many of these
are synthesised as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. A few, however, are active as single chain
molecules, and others are inactive due to substitutions
of the catalytic triad residues.
Length = 229
Score = 87.3 bits (217), Expect = 3e-19
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 227 EVKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V+LG+H LSS V V K +H Y+ + +DIALLKL V ++ ++PICLP
Sbjct: 54 RVRLGSHDLSSGEEGQVIKVSKVIIHPNYNPSTYDNDIALLKLKEPVTLSDNVRPICLPS 113
Query: 287 KQYWQHDFAQAIATVAGWGY 306
Y A TV+GWG
Sbjct: 114 SNYNV--PAGTTCTVSGWGR 131
Score = 39.6 bits (93), Expect = 0.003
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 475 DPKLSTVLRKLKVKVWSQAECLDYDPEVEK----QICAGGEKGNVD 516
L L+++ V + S A C +CAGG +G D
Sbjct: 136 AGSLPDTLQEVNVPIVSNATCRRAYSGGGAITDNMLCAGGLEGGKD 181
>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are
synthesized as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. Alignment contains also inactive enzymes
that have substitutions of the catalytic triad residues.
Length = 232
Score = 85.4 bits (212), Expect = 1e-18
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 227 EVKLGAHYLSSQLNNA-VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
V+LG+H LSS V V+K +H Y+ + +DIALLKL R V ++ ++PICLP
Sbjct: 53 TVRLGSHDLSSNEGGGQVIKVKKVIVHPNYNPSTYDNDIALLKLKRPVTLSDNVRPICLP 112
Query: 286 IKQYWQHDFAQAIATVAGWGYYTYTTAISN 315
Y A TV+GWG + + +
Sbjct: 113 SSGYN--LPAGTTCTVSGWGRTSEGGPLPD 140
Score = 39.6 bits (93), Expect = 0.003
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 467 TTIIVPG-----KDPKLSTVLRKLKVKVWSQAECLDYDPEV----EKQICAGGEKGNVD 516
TT V G + L VL+++ V + S AEC + +CAGG +G D
Sbjct: 122 TTCTVSGWGRTSEGGPLPDVLQEVNVPIVSNAECKRAYSYGGTITDNMLCAGGLEGGKD 180
>gnl|CDD|221308 pfam11911, DUF3429, Protein of unknown function (DUF3429). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 147 to 245
amino acids in length.
Length = 140
Score = 69.2 bits (170), Expect = 6e-14
Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 25/150 (16%)
Query: 686 VPNHIMLLAVAGLVPFLVPCVDVLLISGYTPTM-ELIQTTYSSLLLTTLGGIH------- 737
+P +LL AGL+PFL + +LL + Y +++L+ LGG+H
Sbjct: 3 IPRLALLLGYAGLIPFLAGALLLLLGALAAWLAALHALIAYGAVILSFLGGVHWGFALRA 62
Query: 738 ---LTSHFRAILHNQVNKEDIPTILYPCTFAWISLL--APSVGLVVNSTGLVLLLLADIQ 792
+ FR IL IP +L AW +LL P + L++ G + LLL D +
Sbjct: 63 EGARLARFRLILSV------IPALL-----AWAALLLGPPELALLLLIAGFLALLLVDRR 111
Query: 793 KNQARPSWYKSLRLMTTSTAVVTMVVMVAG 822
A P+WY LRL+ T+ VV++++++
Sbjct: 112 AGLA-PAWYLRLRLLLTAVVVVSLLIVLLL 140
>gnl|CDD|223712 COG0639, ApaH, Diadenosine tetraphosphatase and related
serine/threonine protein phosphatases [Signal
transduction mechanisms].
Length = 155
Score = 69.3 bits (169), Expect = 9e-14
Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 127 ANINKVYGFYDECKRRYNVKL-WKT---FTECFNCMPVAAIVDE-KIFCCHGGLSPYLS- 180
+ +YGFYDE R+Y +L W E F+ +P+AA+ + K+ C HGGLSP L
Sbjct: 1 MLLTALYGFYDEKLRKYGEELEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDR 60
Query: 181 SIDQIRRISRPT--RVPEQGLLCDLLWSDPE 209
+D I + R VP G DLLWSDP+
Sbjct: 61 LLDIIEVLDRLRACEVPHAGHTHDLLWSDPD 91
>gnl|CDD|163667 cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain.
PrpA and PrpB are bacterial type I serine/threonine and
tyrosine phosphatases thought to modulate the expression
of proteins that protect the cell upon accumulation of
misfolded proteins in the periplasm. The PPP
(phosphoprotein phosphatase) family, to which PrpA and
PrpB belong, is one of two known protein phosphatase
families specific for serine and threonine. This family
also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5,
PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 207
Score = 63.1 bits (154), Expect = 3e-11
Identities = 46/180 (25%), Positives = 69/180 (38%), Gaps = 28/180 (15%)
Query: 60 ICGDIHGQYLDLLMLFDYGKYPPKS-RYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFH 118
+ GDIHG Y L D + P R + +GD +DRG SL CL L + P FH
Sbjct: 5 VVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESLA--CLEL---LLEPW-FH 58
Query: 119 LLRGNHECANINKV-YGFYDECKRRYNVKLW----------KTFTECFNCMPVAAIV--- 164
+RGNHE I+ + D + N W + +P+A V
Sbjct: 59 AVRGNHEQMAIDALRAEPLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETE 118
Query: 165 DEKIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRF 224
K+ H P D + ++ E+ LLWS + ++Q ++ V
Sbjct: 119 GGKVGIVHAD-YPSDDWSDGVGAVTLRPEDIEE-----LLWSR-TRIQKAQTQPIKGVDA 171
>gnl|CDD|215708 pfam00089, Trypsin, Trypsin.
Length = 218
Score = 61.7 bits (150), Expect = 1e-10
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 227 EVKLGAHYLSSQL-NNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
V LGAH + + + V+K +H Y+ + +DIALLKL V + ++PICLP
Sbjct: 51 RVVLGAHNIVLREGGEQKFDVKKVIVHPNYN-PDTDNDIALLKLKSPVTLGDTVRPICLP 109
Query: 286 IKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKFPGMS 326
TV+GWG T T + + + P +S
Sbjct: 110 --TASSDLPVGTTCTVSGWG-NTKTLGLPDTLQEVTVPVVS 147
>gnl|CDD|163668 cd07425, MPP_Shelphs, Shewanella-like phosphatases,
metallophosphatase domain. This family includes
bacterial, eukaryotic, and archeal proteins orthologous
to the Shewanella cold-active protein-tyrosine
phosphatase, CAPTPase. CAPTPase is an uncharacterized
protein that belongs to the Shelph (Shewanella-like
phosphatase) family of PPP (phosphoprotein
phosphatases). The PPP family is one of two known
protein phosphatase families specific for serine and
threonine. In addition to Shelps, the PPP family also
includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6,
PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase.
The PPP catalytic domain is defined by three conserved
motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme
family is ancient with members found in all eukaryotes,
and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 208
Score = 47.2 bits (113), Expect = 8e-06
Identities = 35/106 (33%), Positives = 45/106 (42%), Gaps = 22/106 (20%)
Query: 89 LGDYVDRGSNSLETICLLLAYK-----IKYPGMFHLLRGNHECANIN--------KVY-G 134
LGD DRG + +E + LL YK K G H L GNHE N+ K +
Sbjct: 39 LGDIFDRGPDVIEILWLL--YKLEQEAAKAGGKVHFLLGNHELMNLCGDFRYVHPKYFNE 96
Query: 135 FYDECKRRYNVKLWKTFTECFN---CMPVAAIVDEKIFCCHGGLSP 177
F RR +L+ E PV V++ +F HGGL P
Sbjct: 97 FGGLAMRRR--ELFSPGGELGRWLRSKPVIVKVNDTLF-VHGGLGP 139
>gnl|CDD|163666 cd07423, MPP_PrpE, Bacillus subtilis PrpE and related proteins,
metallophosphatase domain. PrpE (protein phosphatase E)
is a bacterial member of the PPP (phosphoprotein
phosphatase) family of serine/threonine phosphatases and
a key signal transduction pathway component controlling
the expression of spore germination receptors GerA and
GerK in Bacillus subtilis. PrpE is closely related to
ApaH (also known symmetrical Ap(4)A hydrolase and
bis(5'nucleosyl)-tetraphosphatase). PrpE has
specificity for phosphotyrosine only, unlike the
serine/threonine phosphatases to which it is related.
The Bacilli members of this family are single domain
proteins while the other members have N- and C-terminal
domains in addition to this phosphatase domain. The PPP
(phosphoprotein phosphatase) family, to which PrpE
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 234
Score = 46.9 bits (112), Expect = 1e-05
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 16/89 (17%)
Query: 57 PLKICGDIHGQYLDLLMLFD---------YGKYPPKSRYL-FLGDYVDRGSNSLETICLL 106
P I GD+HG Y +L L + P+ R F+GD VDRG +S E + L+
Sbjct: 2 PFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLV 61
Query: 107 LAYKIKYPGMFHLLRGNHECANINKVYGF 135
++ G + GNH+ NK+Y
Sbjct: 62 MSMVAA--GAALCVPGNHD----NKLYRK 84
>gnl|CDD|163614 cd00838, MPP_superfamily, metallophosphatase superfamily,
metallophosphatase domain. Metallophosphatases (MPPs),
also known as metallophosphoesterases,
phosphodiesterases (PDEs), binuclear
metallophosphoesterases, and dimetal-containing
phosphoesterases (DMPs), represent a diverse superfamily
of enzymes with a conserved domain containing an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
This superfamily includes: the phosphoprotein
phosphatases (PPPs), Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 131
Score = 43.8 bits (103), Expect = 4e-05
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 60 ICGDIHG--QYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMF 117
+ DIHG + L+ ++ L LGD V G + E + LA +
Sbjct: 2 VISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPV 61
Query: 118 HLLRGNHE 125
+++ GNH+
Sbjct: 62 YVVPGNHD 69
>gnl|CDD|163656 cd07413, MPP_PA3087, Pseudomonas aeruginosa PA3087 and related
proteins, metallophosphatase domain. PA3087 is an
uncharacterized protein from Pseudomonas aeruginosa with
a metallophosphatase domain that belongs to the
phosphoprotein phosphatase (PPP) family. The PPP family
also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5,
PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 222
Score = 45.0 bits (107), Expect = 6e-05
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 60 ICGDIHGQY---LDLLMLFDY----GKYP-PKSRYLFLGDYVDRGSNSLETICLLLAYKI 111
GDIHG + LL Y G Y P+ + +FLGD +DRG E L + +
Sbjct: 3 FIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIREL--LEIVKSM 60
Query: 112 KYPGMFHLLRGNHE 125
G + GNHE
Sbjct: 61 VDAGHALAVMGNHE 74
>gnl|CDD|163664 cd07421, MPP_Rhilphs, Rhilph phosphatases, metallophosphatase
domain. Rhilphs (Rhizobiales/ Rhodobacterales/
Rhodospirillaceae-like phosphatases) are a
phylogenetically distinct group of PPP (phosphoprotein
phosphatases), found only in land plants. They are named
for their close relationship to to PPP phosphatases from
alpha-Proteobacteria, including Rhizobiales,
Rhodobacterales and Rhodospirillaceae. The PPP
(phosphoprotein phosphatase) family, to which the
Rhilphs belong, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and
ApA4 hydrolase. The PPP catalytic domain is defined by
three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-).
The PPP enzyme family is ancient with members found in
all eukaryotes, and in most bacterial and archeal
genomes. Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 304
Score = 43.6 bits (103), Expect = 3e-04
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 60 IC-GDIHGQY--LDLLMLFDYGKYPPK----SRYLFLGDYVDRGSNSLETICLLLAYKIK 112
IC GDIHG L+ L L P + +FLGDY DRG + + I L++ K
Sbjct: 5 ICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEK 64
Query: 113 YPGMFHL-LRGNHECA 127
+P H+ L GNH+ A
Sbjct: 65 HPKQRHVFLCGNHDFA 80
>gnl|CDD|234457 TIGR04075, bacter_Pnkp, polynucleotide kinase-phosphatase. Members
of this protein family are the bacterial polynucleotide
kinase-phosphatase (Pnkp) whose genes occur paired with
genes for the 3' terminal RNA ribose
2'-O-methyltransferase Hen1. All members of the seed
alignment belong to a cassette with the Hen1. The pair
acts in bacterial RNA repair. This enzyme performs
end-healing reactions on broken RNA, preparing from the
RNA ligase to close the break. The working hypothesis is
that the combination of Pnkp (RNA repair) and Hen1 (RNA
modification) serves to first repair RNA damage from
ribotoxins and then perform a modification that prevents
the damage from recurring [Transcription, RNA
processing].
Length = 851
Score = 41.5 bits (98), Expect = 0.002
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 27/89 (30%)
Query: 57 PLKICGDIHGQYLDLLMLFD--------------YGKYPPKSR-YLFLGDYVDRGSNSLE 101
P I GD+HG +L L + P+ R +F+GD VDRG +S
Sbjct: 181 PFDIIGDVHGCRDELETLLEELGYQIERDEGGRPVDVTHPEGRKAVFVGDLVDRGPDSPG 240
Query: 102 TICLLLAYKIKYPGMF---HLL--RGNHE 125
+ L++ GM L GNH+
Sbjct: 241 VLRLVM-------GMVAAGTALCVPGNHD 262
>gnl|CDD|107154 PHA02239, PHA02239, putative protein phosphatase.
Length = 235
Score = 40.4 bits (94), Expect = 0.002
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 63 DIHGQYLDLLMLFD--YGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLL 120
DIHG+Y LL + D + P+ +FLGDYVDRG S + + + + LL
Sbjct: 8 DIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMSNDDNVVTLL 67
Query: 121 RGNHE------CANINKVYGFYD-ECKRRY 143
GNH+ N++++ YD E RY
Sbjct: 68 -GNHDDEFYNIMENVDRL-SIYDIEWLSRY 95
>gnl|CDD|184187 PRK13625, PRK13625, bis(5'-nucleosyl)-tetraphosphatase PrpE;
Provisional.
Length = 245
Score = 40.1 bits (94), Expect = 0.003
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 15/86 (17%)
Query: 60 ICGDIHGQYLDLLMLFDYGKY---------PPKSRYLFLGDYVDRGSNSLETICLLLAYK 110
I GDIHG Y + L + Y P + + F+GD DRG +SL I ++ ++
Sbjct: 5 IIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIV--WE 62
Query: 111 IKYPGMFHLLRGNHECANINKVYGFY 136
+ + + GNH C NK+Y F+
Sbjct: 63 LVEKKAAYYVPGNH-C---NKLYRFF 84
>gnl|CDD|236911 PRK11439, pphA, serine/threonine protein phosphatase 1;
Provisional.
Length = 218
Score = 39.0 bits (91), Expect = 0.005
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 60 ICGDIHGQYLDLLM--LFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMF 117
+ GDIHG + + LM L P + + +GD +DRG SL CL L +
Sbjct: 21 LVGDIHGCF-EQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLR--CLQLLEE----HWV 73
Query: 118 HLLRGNHE 125
+RGNHE
Sbjct: 74 RAVRGNHE 81
>gnl|CDD|163665 cd07422, MPP_ApaH, Escherichia coli ApaH and related proteins,
metallophosphatase domain. ApaH (also known as
symmetrically cleaving Ap4A hydrolase and
bis(5'nucleosyl)-tetraphosphatase) is a bacterial member
of the PPP (phosphoprotein phosphatase) family of
serine/threonine phosphatases that hydrolyzes the
nucleotide-signaling molecule diadenosine tetraphosphate
(Ap(4)A) into two ADP and also hydrolyzes Ap(5)A,
Gp(4)G, and other extending compounds. Null mutations
in apaH result in high intracellular levels of Ap(4)A
which correlate with multiple phenotypes, including a
decreased expression of catabolite-repressible genes, a
reduction in the expression of flagellar operons, and an
increased sensitivity to UV and heat. Ap4A hydrolase
is important in responding to heat shock and oxidative
stress via regulating the concentration of Ap4A in
bacteria. Ap4A hydrolase is also thought to play a role
in siderophore production, but the mechanism by which
ApaH interacts with siderophore pathways in unknown.
The PPP (phosphoprotein phosphatase) family, to which
ApaH belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and PrpA/PrpB. The
PPP catalytic domain is defined by three conserved
motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme
family is ancient with members found in all eukaryotes,
and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 257
Score = 38.6 bits (91), Expect = 0.008
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 62 GDIHGQYLDLLMLFDYGKYPPKSRYL-FLGDYVDRGSNSLETI 103
GDI G Y +L L + + P L +GD V+RG +SLET+
Sbjct: 5 GDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETL 47
>gnl|CDD|234673 PRK00166, apaH, diadenosine tetraphosphatase; Reviewed.
Length = 275
Score = 37.5 bits (88), Expect = 0.022
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 13/69 (18%)
Query: 62 GDIHGQYLDLLML-----FDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGM 116
GDI G Y +L L FD P K +GD V+RG +SLE L +
Sbjct: 7 GDIQGCYDELQRLLEKIDFD----PAKDTLWLVGDLVNRGPDSLEV----LRFVKSLGDS 58
Query: 117 FHLLRGNHE 125
+ GNH+
Sbjct: 59 AVTVLGNHD 67
>gnl|CDD|233082 TIGR00668, apaH, bis(5'-nucleosyl)-tetraphosphatase (symmetrical).
Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a
regulatory metabolite of stress conditions. It is
hydrolyzed to two ADP by this enzyme. Alternate names
include diadenosine-tetraphosphatase and Ap4A hydrolase
[Cellular processes, Adaptations to atypical
conditions].
Length = 279
Score = 36.8 bits (85), Expect = 0.036
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 62 GDIHGQYLDLLMLFDYGKYPPKSRYLFL-GDYVDRGSNSLETICLLLAYKIKYPG-MFHL 119
GD+HG Y +L L + ++ P L+L GD V RG SLE L +K G L
Sbjct: 7 GDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLE--VLRY---VKSLGDAVRL 61
Query: 120 LRGNHE 125
+ GNH+
Sbjct: 62 VLGNHD 67
>gnl|CDD|182173 PRK09968, PRK09968, serine/threonine-specific protein phosphatase
2; Provisional.
Length = 218
Score = 35.6 bits (82), Expect = 0.054
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 62 GDIHGQYLDLLMLFDYGKYPPKSRYLF-LGDYVDRGSNSLETICLLLAYKIKYPGMFHLL 120
GDIHG+Y L + P++ L +GD +DRG SL + LL F +
Sbjct: 21 GDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLL------NQPWFISV 74
Query: 121 RGNHE 125
+GNHE
Sbjct: 75 KGNHE 79
>gnl|CDD|131081 TIGR02026, BchE, magnesium-protoporphyrin IX monomethyl ester
anaerobic oxidative cyclase. This model respresents the
cobalamin-dependent oxidative cyclase responsible for
forming the distinctive E-ring of the chlorin ring
system under anaerobic conditions. This step is
essential in the biosynthesis of both
bacteriochlorophyll and chlorophyll under anaerobic
conditions (a separate enzyme, AcsF, acts under aerobic
conditions). This model identifies two clades of
sequences, one from photosynthetic, non-cyanobacterial
bacteria and another including Synechocystis and several
non-photosynthetic bacteria. The function of the
Synechocystis gene is supported by gene clustering with
other photosynthetic genes, so the purpose of the gene
in the non-photosynthetic bacteria is uncertain. Note
that homologs of this gene are not found in plants which
rely solely on the aerobic cyclase.
Length = 497
Score = 34.5 bits (79), Expect = 0.26
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 705 CVDVLLISGYTPTMELIQTTYSSL------LLTTLGGIHLTSHFRAIL 746
C D++LI+ TP + + T + LGGIH T F +L
Sbjct: 63 CPDLVLITAITPAIYIACETLKFARERLPNAIIVLGGIHPTFMFHQVL 110
>gnl|CDD|233250 TIGR01052, top6b, DNA topoisomerase VI, B subunit. This model
describes DNA topoisomerase VI, an archaeal type II DNA
topoisomerase (DNA gyrase) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 488
Score = 33.3 bits (76), Expect = 0.64
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 600 VDEENAGNNEEIVGHNKKALSEMDKKIKENIEMLKNDLGKMKKTPEIIKYRDMIAKYLPV 659
+++ + EI + AL E+ ++++ L + + E IK R + KYLP
Sbjct: 424 TGKQSVADIPEIYNEIRLALMEVARRLRLY-------LSRKAREEEEIKRRKTLEKYLPE 476
Query: 660 KISNMEELKSLLNKE 674
+ L +L K
Sbjct: 477 IA---KSLAYILEKP 488
>gnl|CDD|234485 TIGR04154, archaeo_STT3, oligosaccharyl transferase, archaeosortase
A system-associated. Members of this protein family
occur, one to three members per genome, in the same
species of Euryarchaeota as contain the predicted
protein-sorting enzyme archaeosortase (TIGR04125) and
its cognate protein-sorting signal PGF-CTERM
(TIGR04126).
Length = 815
Score = 32.3 bits (74), Expect = 1.3
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 12/99 (12%)
Query: 693 LAVAGLVPFLVPCVDVLLISGYTPTMELIQTTYSSLLLTTLGGIHLTSHFRAILHNQVNK 752
LA+ G V F V V ++L G+ T YS L G+ L + A L +
Sbjct: 238 LAIVGAVTFAVAAV-LVLPFGFKLGFSA--TYYSLFQPLALLGVALGAVLLAGLSRFWER 294
Query: 753 EDIPTILYPCTFAWISLLAPSVGLVVNSTGLVLLLLADI 791
+D+P YP A GL ++ L L D+
Sbjct: 295 KDLPRYYYPAAVA---------GLAALGILVLALALPDL 324
>gnl|CDD|217779 pfam03885, DUF327, Protein of unknown function (DUF327). The
proteins in this family are around 140-170 residues in
length. The proteins contain many conserved residues.
with the most conserved motifs found in the central and
C-terminal region. The function of these proteins is
unknown.
Length = 146
Score = 30.6 bits (70), Expect = 1.7
Identities = 15/86 (17%), Positives = 38/86 (44%)
Query: 583 NRIKQGLSGKPLKVEEIVDEENAGNNEEIVGHNKKALSEMDKKIKENIEMLKNDLGKMKK 642
N+ + ++ E++ +E + KK E K++ + I+ N L +
Sbjct: 4 NKKSRLGLKTKKSSKKKESGESSSFSEVLEEIRKKKSEERLKELLDEIDKAGNRLARSPT 63
Query: 643 TPEIIKYRDMIAKYLPVKISNMEELK 668
++ +Y+ +I ++L + N +L+
Sbjct: 64 LEDLKRYKKLIKEFLKEVVKNSYKLE 89
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 31.8 bits (73), Expect = 1.8
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 609 EEIVGHNKKALSEMDKKIKENIEMLKNDLGKMKKTPEIIK 648
EE+V +KA E+D I+E E DLG PE+IK
Sbjct: 279 EEMV---EKATKEVDNAIREEGEQAAFDLGVHGLHPELIK 315
>gnl|CDD|179790 PRK04213, PRK04213, GTP-binding protein; Provisional.
Length = 201
Score = 30.7 bits (70), Expect = 2.2
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Query: 611 IVGHNKKALSEMDKKIKENIEMLKNDLGKMKKTPEIIKYRDMIAKYLPV--KISNMEELK 668
IV NK MDK IK E+L ++ P +++D+IA P+ K +EELK
Sbjct: 134 IVAVNK-----MDK-IKNRDEVLDEIAERLGLYPPWRQWQDIIA---PISAKKGGIEELK 184
Query: 669 SLLNKEFDQFKMSDL 683
+ K + K DL
Sbjct: 185 EAIRKRLHEAKRDDL 199
>gnl|CDD|224307 COG1389, COG1389, DNA topoisomerase VI, subunit B [DNA replication,
recombination, and repair].
Length = 538
Score = 31.2 bits (71), Expect = 2.8
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 603 ENAGNNEEIVGHNKKALSEMDKKIKENIEMLKNDLGKMKKTPEIIKYRDMIAKYLPVKIS 662
++ + EI + AL E+ +K LK L + ++ E K R I KYLP
Sbjct: 435 QSIADVPEIENEIRLALMEVARK-------LKLYLSRKRREMEERKKRKTIEKYLPEIAK 487
Query: 663 NMEEL 667
+ E+
Sbjct: 488 KLAEI 492
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 30.5 bits (69), Expect = 2.8
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 563 KDTKEEDEFNIKYTLKQDDLNRIKQGLSGKPLKVEEIVDEENAGNNEEIVGHNKKALSEM 622
K+ K+ N++ +++ N+ + + L+ EEI EE ++EE + L +
Sbjct: 3 KECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDE 62
Query: 623 DKKIKENIEMLKNDLGKMKK-----TPEIIKYRDMIAK 655
+ K+KE + L+N+L +K E YR AK
Sbjct: 63 NNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAK 100
>gnl|CDD|204962 pfam12555, TPPK_C, Thiamine pyrophosphokinase C terminal. This
domain family is found in bacteria, and is approximately
50 amino acids in length. The proteins in this family
catalyzes the pyrophosphorylation of thiamine in yeast
and synthesizes thiamine pyrophosphate (TPP), a thiamine
coenzyme.
Length = 53
Score = 27.9 bits (63), Expect = 2.9
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 689 HIMLLAVAGLVPFLVPCVDVLLISGYTPT-MELIQTTYSSLLL 730
++LL +A LV V LLIS + ++L+ T+ L
Sbjct: 15 ALLLLVLAALVALAV----ALLISPAGQSFLDLLADTWRLLAG 53
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 31.0 bits (70), Expect = 4.0
Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 27/146 (18%)
Query: 561 GTKDTKEEDEFNIKYTLKQDDLNRIKQGLSGKPLKVEEIVDEENAGNNEEIVGHNKKALS 620
K E + L + + L ++E E+ N +IV + K +
Sbjct: 818 NILIQKLEAHTEKNDEELKQLLQKFPTED--ENLNLKE--LEKEFNENNQIVDNIIKDIE 873
Query: 621 EMDKKI----------------KENIEMLKNDLGKMKKTPE----IIKYRDMIAKY--LP 658
M+K I K+ +E L N+ +K E II ++I K L
Sbjct: 874 NMNKNINIIKTLNIAINRSNSNKQLVEHLLNNKIDLKNKLEQHMKIINTDNIIQKNEKLN 933
Query: 659 VKISNMEELKSLLNKEFDQFKMSDLN 684
+ +N+ + K + K+ K+++L
Sbjct: 934 LL-NNLNKEKEKIEKQLSDTKINNLK 958
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 30.3 bits (69), Expect = 4.4
Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 28/149 (18%)
Query: 562 TKDTKEEDEFNIKYTLKQDDLNRIKQGLSGKPLKVEEIVDEENAGNNEEIVGHNKKALSE 621
+ K E+E + K+ R+KQGLS + + +E +
Sbjct: 16 AEKEKIEEEDEEE--EKEGWFERLKQGLSKTKKNFGKGIKGLFLKKIKEKL--------- 64
Query: 622 MDKKIKENIEM--LKNDLGKMKKTPEIIKY-RDMIAKYLPVKISNMEELKSLL------- 671
D+ + E +E ++ D+G ++ EII+ R K KI + E +K L
Sbjct: 65 -DEDLLEELEELLIEADVG-VETAEEIIEELRKREGK--KKKIKDEETVKEALREALIEI 120
Query: 672 ---NKEFDQFKMSDLNQVPNHIMLLAVAG 697
+ D + P I+ + V G
Sbjct: 121 LRPVDKVDLPLEIPKEKKPFVILFVGVNG 149
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 30.3 bits (69), Expect = 4.8
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 19/106 (17%)
Query: 589 LSGKPLKVEEIVDEENAGNNEEI-VGHN----KKALSEMDKKIK---ENIEMLKNDLGKM 640
+GK +K +E+ AG EI VG + K+ L E+++++K E +E +K L K+
Sbjct: 303 KAGKEVKAKELGSP--AGTKTEIEVGVDFPELKEELKELEEELKELEEELEKIKKLLKKL 360
Query: 641 KK------TPEIIKYRDMIAK---YLPVKISNMEELKSLLNKEFDQ 677
K PE + + + + L ++ +EE L +E +
Sbjct: 361 PKKARGQLPPEKREQLEKLLETKEKLSEELEELEEELKELKEELES 406
>gnl|CDD|218986 pfam06317, Arena_RNA_pol, Arenavirus RNA polymerase. This family
consists of several Arenavirus RNA polymerase proteins
(EC:2.7.7.48).
Length = 2206
Score = 30.4 bits (69), Expect = 5.0
Identities = 29/96 (30%), Positives = 36/96 (37%), Gaps = 29/96 (30%)
Query: 169 FCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEV 228
Y SS DQI P LL L DP++ E + FH
Sbjct: 1310 LLYDVIPDSYTSSDDQISLFKSP-------LLDLLDGLDPDEFLE-------LLEFH--- 1352
Query: 229 KLGAHYLSSQLNNAVYP--VEKTFLHEKYDKAEIKS 262
++LSS+LN V P V TF+ AE KS
Sbjct: 1353 ----NFLSSKLNKFVSPKSVIGTFV------AEFKS 1378
>gnl|CDD|218598 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 3
subunit 8 N-terminus. The largest of the mammalian
translation initiation factors, eIF3, consists of at
least eight subunits ranging in mass from 35 to 170 kDa.
eIF3 binds to the 40 S ribosome in an early step of
translation initiation and promotes the binding of
methionyl-tRNAi and mRNA.
Length = 593
Score = 30.2 bits (68), Expect = 5.1
Identities = 10/37 (27%), Positives = 23/37 (62%)
Query: 615 NKKALSEMDKKIKENIEMLKNDLGKMKKTPEIIKYRD 651
N KAL+ + +K+K+N + ++D+ + ++ PE +
Sbjct: 106 NAKALNTLKQKVKKNNKQFEDDITRYREDPESEDEEE 142
>gnl|CDD|187644 cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydrogenase (HBDH),
classical (c) SDRs. DHBDH, an NAD+ -dependent enzyme,
catalyzes the interconversion of D-3-hydroxybutyrate and
acetoacetate. It is a classical SDR, with the canonical
NAD-binding motif and active site tetrad. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold (alpha/beta folding pattern with a central
beta-sheet), an NAD(P)(H)-binding region, and a
structurally diverse C-terminal region. Classical SDRs
are typically about 250 residues long, while extended
SDRs are approximately 350 residues. Sequence identity
between different SDR enzymes are typically in the
15-30% range, but the enzymes share the Rossmann fold
NAD-binding motif and characteristic NAD-binding and
catalytic sequence patterns. These enzymes catalyze a
wide range of activities including the metabolism of
steroids, cofactors, carbohydrates, lipids, aromatic
compounds, and amino acids, and act in redox sensing.
Classical SDRs have an TGXXX[AG]XG cofactor binding
motif and a YXXXK active site motif, with the Tyr
residue of the active site motif serving as a critical
catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 258
Score = 29.7 bits (67), Expect = 5.3
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 500 PEVEKQICAGGEKGNVD---VKEDLRFEEVDSSRRLTVCQFNDV 540
P VEKQI A +K V +L E+ S + +T Q D
Sbjct: 189 PLVEKQISALAQKNGVPQEQAARELLLEKQPSKQFVTPEQLGDT 232
>gnl|CDD|205193 pfam13012, MitMem_reg, Maintenance of mitochondrial structure and
function. This is C-terminal to the Mov24 region of the
yeast proteasomal subunit Rpn11 and seems likely to
regulate the mitochondrial fission and tubulation
processes, ie the outer mitochondrial membrane proteins.
This function appears to be unrelated to the proteasome
activity of the N-terminal region.
Length = 115
Score = 28.3 bits (64), Expect = 5.6
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 613 GHNKKALSEMDKKIKENIEMLKNDLGKMKKTPEIIKY-RDMIAKYLPVKISNMEELKSLL 671
G N+ S + +K++ + LKN L K T I Y D+I LP + +L+SLL
Sbjct: 14 GLNRHYYSTLSRKLELEQKALKN-LHKRLWT--IGLYLEDVIDGKLPPNHEILRKLQSLL 70
Query: 672 NK----EFDQFKMSDLNQVPNHIMLLAVAGLVP 700
N + +F+ + + ++++ + L
Sbjct: 71 NLLPNYDNKEFEEEFNVETNDQLLVVYLGKLDR 103
>gnl|CDD|221957 pfam13175, AAA_15, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 320
Score = 29.7 bits (67), Expect = 5.8
Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 18/110 (16%)
Query: 567 EEDEFNIKYTLKQDDLNRIKQGLSGKPLKVEEIVDEENAGNNEEIVGHNKKALSEMDKKI 626
D + + +K + D + N EI K LS K +
Sbjct: 116 FSKNLEYILKKILDKIEKFD------EIKGAKKKDFFKSINIYEIDNFIDKTLS---KIL 166
Query: 627 KENIEMLKNDLGKMKKTPEIIKYRDMIAKYLPVKISNMEELKSLLNKEFD 676
+NI N I ++ K+SN++ K +N++
Sbjct: 167 DDNIVFQDN------LEKNIDDK---LSNIFNEKLSNLKNEKISINEKIK 207
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 30.1 bits (68), Expect = 6.1
Identities = 24/134 (17%), Positives = 51/134 (38%), Gaps = 20/134 (14%)
Query: 569 DEFNIKYTLKQDDLNRIKQGLSGKPLKVEEIVDEENAGNNEEIVGHNKKALSEMDKKIKE 628
+F + + + + + L + E + E+ E+ + ++ E+ KK+K+
Sbjct: 440 KKFLEEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKK 499
Query: 629 NIEMLKNDLGKMKKTPEIIKYRDMIAKYLPVKISNMEELKSLLNKEFDQFKM---SDLNQ 685
E+ L + L + E+L++LL K+ + F + DL
Sbjct: 500 IPEVDTYLLLEE----------------LGINEETYEKLEALLAKK-NNFTLVVGEDLYA 542
Query: 686 VPNHIMLLAVAGLV 699
N L + GL+
Sbjct: 543 HKNAKNLAKLLGLI 556
>gnl|CDD|184949 PRK14987, PRK14987, gluconate operon transcriptional regulator;
Provisional.
Length = 331
Score = 29.2 bits (65), Expect = 8.1
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 649 YRDMIAKYLPVKISNMEELKSLLNKEFDQFKMSDLNQVPNHIMLLAVAG-----LVPFLV 703
Y+ M+A Y E L+S+L+ D +++ P + ++ VAG L+
Sbjct: 94 YQTMLAHYGYKPEMEQERLESMLSWNIDGLILTERTHTPRTLKMIEVAGIPVVELMDSQS 153
Query: 704 PCVDV 708
PC+D+
Sbjct: 154 PCLDI 158
>gnl|CDD|236079 PRK07729, PRK07729, glyceraldehyde-3-phosphate dehydrogenase;
Validated.
Length = 343
Score = 29.3 bits (66), Expect = 8.4
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 241 NAVYPVEKTF--------LHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQY 289
NA YP E T +H K+D + LL G+K++ N P LP
Sbjct: 33 NASYPSE-TLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRDPKELPWTDL 88
>gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein. This
model represents a group of paralogous families in
plasmodium species alternately annotated as reticulocyte
binding protein, 235-kDa family protein and rhoptry
protein. Rhoptry protein is localized on the cell surface
and is extremely large (although apparently lacking in
repeat structure) and is important for the process of
invasion of the RBCs by the parasite. These proteins are
found in P. falciparum, P. vivax and P. yoelii.
Length = 2757
Score = 29.6 bits (66), Expect = 8.6
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 31/115 (26%)
Query: 570 EFNIKYTLKQDDLNRIKQGLSGKPLKVEEIVDEENAGNNEEIVGHNKKALSEMDKKIKEN 629
E NIKY D++N+IK + N ++ + H+ KAL E+ KK +
Sbjct: 1104 EENIKYA---DEINKIKDDIK----------------NLDQKIDHHIKALEEIKKKSENY 1144
Query: 630 IEMLKNDLGKMKKTPEIIKYRDMIAKYLPVKISNM-----------EELKSLLNK 673
I+ +K + ++ + D + + KI N+ +E+K LLN+
Sbjct: 1145 IDEIKAQINDLEDVADKAISNDDP-EEIEKKIENIVTKIDKKKNIYDEIKKLLNE 1198
>gnl|CDD|227569 COG5244, NIP100, Dynactin complex subunit involved in mitotic
spindle partitioning in anaphase B [Cell division and
chromosome partitioning].
Length = 669
Score = 29.7 bits (66), Expect = 9.1
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 580 DDLNRIKQGLSGKPLKVEEIVDEENAG--NNEEIVGHN---KKALSEMDKKIKENIEMLK 634
D L QG+ L+ I E+ + ++ E + N L+E + ++KE + +
Sbjct: 481 DKLEVFFQGIE-SLLENITIFPEQPSQQTSDSENIKENSLLSDRLNEENIRLKEVLVQKE 539
Query: 635 NDLGKMKKTPEIIKYRDMIAKYLPVKISNM-EELKSLLNKEFDQF 678
N L + + +II RD+ K L I + EL + NK ++
Sbjct: 540 NMLTE-ETKIKIIIGRDLERKTLEENIKTLKVELNNKNNKLKEEN 583
>gnl|CDD|178768 PLN03229, PLN03229, acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha; Provisional.
Length = 762
Score = 29.4 bits (66), Expect = 9.3
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 9/94 (9%)
Query: 558 TKPGTKDTKEEDEFNIKYTLKQDDLNRIKQGLSGKPLKVEEIVDEENAGN----NEEIVG 613
K + K+E E + LK L I K E+ NEEI
Sbjct: 602 LKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDT-AEQTPPPNLQEKIESLNEEI-- 658
Query: 614 HNKKALSEMD-KKIKENIEMLKNDLGKMKKTPEI 646
NKK + +K IE+LK ++ K KTP++
Sbjct: 659 -NKKIERVIRSSDLKSKIELLKLEVAKASKTPDV 691
>gnl|CDD|146707 pfam04212, MIT, MIT (microtubule interacting and transport) domain.
The MIT domain forms an asymmetric three-helix bundle
and binds ESCRT-III (endosomal sorting complexes
required for transport) substrates.
Length = 69
Score = 26.8 bits (60), Expect = 9.4
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 15/72 (20%)
Query: 600 VDEENAGNNEEIVGHNKKALSEMDKKIKENIEMLKNDLGKMKKTPEIIKYRDMIAKYLPV 659
V+ + AGN EE + K+A+ + ++ LK + ++ R IA+YL
Sbjct: 13 VEADEAGNYEEALELYKEAIEYL-------LQALKYEPDPKRRE----ALRQKIAEYL-- 59
Query: 660 KISNMEELKSLL 671
EELK LL
Sbjct: 60 --DRAEELKELL 69
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.405
Gapped
Lambda K H
0.267 0.0780 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 41,599,537
Number of extensions: 4107456
Number of successful extensions: 3679
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3624
Number of HSP's successfully gapped: 88
Length of query: 826
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 721
Effective length of database: 6,280,432
Effective search space: 4528191472
Effective search space used: 4528191472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (27.9 bits)