RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17085
(826 letters)
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase,
toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN;
2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Length = 330
Score = 417 bits (1075), Expect = e-140
Identities = 160/211 (75%), Positives = 183/211 (86%), Gaps = 1/211 (0%)
Query: 1 MSQVDSLNLDSIINRLIDI-DARSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLK 59
MS + LNLDSII RL+++ +R G+NV L E+EI LC SREIFLS+P+LLEL PLK
Sbjct: 1 MSDSEKLNLDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLK 60
Query: 60 ICGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHL 119
ICGDIHGQY DLL LF+YG +PP+S YLFLGDYVDRG SLETICLLLAYKIKYP F L
Sbjct: 61 ICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFL 120
Query: 120 LRGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYL 179
LRGNHECA+IN++YGFYDECKRRYN+KLWKTFT+CFNC+P+AAIVDEKIFCCHGGLSP L
Sbjct: 121 LRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDL 180
Query: 180 SSIDQIRRISRPTRVPEQGLLCDLLWSDPEK 210
S++QIRRI RPT VP+QGLLCDLLWSDP+K
Sbjct: 181 QSMEQIRRIMRPTDVPDQGLLCDLLWSDPDK 211
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit;
carbohydrate metabolism, cell cycle, cell division; HET:
1ZN; 1.63A {Homo sapiens} PDB: 3e7b_A* 3egg_A* 3egh_A*
3hvq_A 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A
2o8a_A 1u32_A* 1s70_A*
Length = 299
Score = 413 bits (1063), Expect = e-139
Identities = 159/209 (76%), Positives = 182/209 (87%), Gaps = 1/209 (0%)
Query: 3 QVDSLNLDSIINRLIDI-DARSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKIC 61
+ SLNLDSII RL+++ +R G+NV L E+EI LC SREIFLS+P+LLEL PLKIC
Sbjct: 2 HMGSLNLDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKIC 61
Query: 62 GDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLR 121
GDIHGQY DLL LF+YG +PP+S YLFLGDYVDRG SLETICLLLAYKIKYP F LLR
Sbjct: 62 GDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLR 121
Query: 122 GNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSS 181
GNHECA+IN++YGFYDECKRRYN+KLWKTFT+CFNC+P+AAIVDEKIFCCHGGLSP L S
Sbjct: 122 GNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQS 181
Query: 182 IDQIRRISRPTRVPEQGLLCDLLWSDPEK 210
++QIRRI RPT VP+QGLLCDLLWSDP+K
Sbjct: 182 MEQIRRIMRPTDVPDQGLLCDLLWSDPDK 210
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic
subunit alpha isoform; protein-protein complex, heat
repeat, signaling protein; HET: OKA; 2.60A {Homo
sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C*
3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C*
2nyl_C*
Length = 309
Score = 390 bits (1004), Expect = e-130
Identities = 96/209 (45%), Positives = 136/209 (65%), Gaps = 8/209 (3%)
Query: 2 SQVDSLNLDSIINRLIDIDARSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKIC 61
+V + LD I +L + L ES++ +LC ++EI E + E+ P+ +C
Sbjct: 3 EKVFTKELDQWIEQLNEC-------KQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVC 55
Query: 62 GDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLR 121
GD+HGQ+ DL+ LF G P + YLF+GDYVDRG S+ET+ LL+A K++Y +LR
Sbjct: 56 GDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILR 115
Query: 122 GNHECANINKVYGFYDECKRRY-NVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLS 180
GNHE I +VYGFYDEC R+Y N +WK FT+ F+ +P+ A+VD +IFC HGGLSP +
Sbjct: 116 GNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSID 175
Query: 181 SIDQIRRISRPTRVPEQGLLCDLLWSDPE 209
++D IR + R VP +G +CDLLWSDP+
Sbjct: 176 TLDHIRALDRLQEVPHEGPMCDLLWSDPD 204
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform;
protein-peptide docking, protein targeting, AKA
beta-augmentation, calmodulin-binding, membrane,
hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A*
1tco_A* 1mf8_A* 2jog_A
Length = 357
Score = 378 bits (973), Expect = e-125
Identities = 81/203 (39%), Positives = 123/203 (60%), Gaps = 7/203 (3%)
Query: 8 NLDSIINRLIDIDARSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKICGDIHGQ 67
+D + L+ + L ES + I E LL++ P+ +CGDIHGQ
Sbjct: 29 RVDILKAHLM-------KEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQ 81
Query: 68 YLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLLRGNHECA 127
+ DL+ LF+ G P +RYLFLGDYVDRG S+E + L A KI YP LLRGNHEC
Sbjct: 82 FFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECR 141
Query: 128 NINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIRR 187
++ + + F ECK +Y+ +++ + F+C+P+AA+++++ C HGGLSP ++++D IR+
Sbjct: 142 HLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIRK 201
Query: 188 ISRPTRVPEQGLLCDLLWSDPEK 210
+ R P G +CD+LWSDP +
Sbjct: 202 LDRFKEPPAYGPMCDILWSDPLE 224
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein,
structural genomics, PSI-2, protein structu initiative;
2.30A {Saccharomyces cerevisiae}
Length = 335
Score = 367 bits (944), Expect = e-121
Identities = 74/215 (34%), Positives = 116/215 (53%), Gaps = 10/215 (4%)
Query: 5 DSLNLDSIINRLID--IDARSGRNVNLHESEISALCRVSREIFLSEPMLLEL------GT 56
+ ++ I ++ + L + ++A+ + +F EP ++EL
Sbjct: 5 KGAKIKNMSQEFISKMVNDLFLKGKYLPKKYVAAIISHADTLFRQEPSMVELENNSTPDV 64
Query: 57 PLKICGDIHGQYLDLLMLFD-YGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPG 115
+ +CGD HGQ+ D+L LF +GK PK YLF GD+VDRGS S E L KI +P
Sbjct: 65 KISVCGDTHGQFYDVLNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCLKILHPN 124
Query: 116 MFHLLRGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGL 175
F L RGNHE N+NK+YGF DECK +Y+ +++ F + F +P+A +++ HGGL
Sbjct: 125 NFFLNRGNHESDNMNKIYGFEDECKYKYSQRIFNMFAQSFESLPLATLINNDYLVMHGGL 184
Query: 176 -SPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPE 209
S +++ + I R + P G +LLW+DP+
Sbjct: 185 PSDPSATLSDFKNIDRFAQPPRDGAFMELLWADPQ 219
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase,
immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Length = 521
Score = 364 bits (935), Expect = e-117
Identities = 81/210 (38%), Positives = 123/210 (58%), Gaps = 7/210 (3%)
Query: 1 MSQVDSLNLDSIINRLIDIDARSGRNVNLHESEISALCRVSREIFLSEPMLLELGTPLKI 60
+D + L+ + L ES + I E LL++ P+ +
Sbjct: 35 FDNDGKPRVDILKAHLM-------KEGRLEESVALRIITEGASILRQEKNLLDIDAPVTV 87
Query: 61 CGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHLL 120
CGDIHGQ+ DL+ LF+ G P +RYLFLGDYVDRG S+E + L A KI YP LL
Sbjct: 88 CGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLL 147
Query: 121 RGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLS 180
RGNHEC ++ + + F ECK +Y+ +++ + F+C+P+AA+++++ C HGGLSP ++
Sbjct: 148 RGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEIN 207
Query: 181 SIDQIRRISRPTRVPEQGLLCDLLWSDPEK 210
++D IR++ R P G +CD+LWSDP +
Sbjct: 208 TLDDIRKLDRFKEPPAYGPMCDILWSDPLE 237
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors,
drug design, cytoplasm, hydrolase, iron, manganese,
metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens}
PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A*
3h68_A* 3h69_A* 1s95_A
Length = 315
Score = 351 bits (904), Expect = e-115
Identities = 76/214 (35%), Positives = 117/214 (54%), Gaps = 13/214 (6%)
Query: 2 SQVDSLNLDSIINRLIDIDARSGRNVNLHESEISALCRVSREIFLSEPMLLEL----GTP 57
+V + ++ LH + +E+ L+E
Sbjct: 9 GKVTISFMKELMQWYK-------DQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEK 61
Query: 58 LKICGDIHGQYLDLLMLFDYGKYPPKSR-YLFLGDYVDRGSNSLETICLLLAYKIKYPGM 116
+ +CGD HGQ+ DLL +F+ P ++ Y+F GD+VDRGS S+E I L +K+ YP
Sbjct: 62 ITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDH 121
Query: 117 FHLLRGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGL- 175
FHLLRGNHE N+N++YGF E K +Y ++++ F+E F +P+A ++ K+ HGGL
Sbjct: 122 FHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLF 181
Query: 176 SPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPE 209
S ++D IR+I R + P+ G +CDLLWSDP+
Sbjct: 182 SEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQ 215
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 342 bits (880), Expect = e-109
Identities = 76/214 (35%), Positives = 117/214 (54%), Gaps = 13/214 (6%)
Query: 2 SQVDSLNLDSIINRLIDIDARSGRNVNLHESEISALCRVSREIFLSEPMLLEL----GTP 57
+V + ++ LH + +E+ L+E
Sbjct: 162 GKVTISFMKELMQWYK-------DQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEK 214
Query: 58 LKICGDIHGQYLDLLMLFDYGKYPPKSR-YLFLGDYVDRGSNSLETICLLLAYKIKYPGM 116
+ +CGD HGQ+ DLL +F+ P ++ Y+F GD+VDRGS S+E I L +K+ YP
Sbjct: 215 ITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDH 274
Query: 117 FHLLRGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGL- 175
FHLLRGNHE N+N++YGF E K +Y ++++ F+E F +P+A ++ K+ HGGL
Sbjct: 275 FHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLF 334
Query: 176 SPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPE 209
S ++D IR+I R + P+ G +CDLLWSDP+
Sbjct: 335 SEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQ 368
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle,
hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Length = 342
Score = 94.9 bits (235), Expect = 3e-21
Identities = 43/192 (22%), Positives = 64/192 (33%), Gaps = 21/192 (10%)
Query: 39 RVSREIFLSEPMLLELGTPLKICGDIHGQYLDLLMLFDYGKY--------PPKSRYLFLG 90
++S EI P + D+HGQY LL L K + + G
Sbjct: 54 KLSSEIKQIMPDTYLGIKKVVALSDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHMVMTG 113
Query: 91 DYVDRGSNSLETICLLLAYKIKYP---GMFHLLRGNHECANI-------NKVYGFYDECK 140
D DRG E + + + GM HLL GNHE + ++ Y
Sbjct: 114 DIFDRGHQVNEVLWFMYQLDQQARDAGGMVHLLMGNHEQMVLGGDLRYVHQRYDIATTLI 173
Query: 141 RRYNVKLWKTFTECFNCMPV--AAIVDEKIFCCHGGLSP-YLSSIDQIRRISRPTRVPEQ 197
R KL+ TE + I + HGG+S ++S + + + R
Sbjct: 174 NRPYNKLYSADTEIGQWLRSKNTIIKINDVLYMHGGISSEWISRELTLDKANALYRANVD 233
Query: 198 GLLCDLLWSDPE 209
L D
Sbjct: 234 ASKKSLKADDLL 245
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 92.6 bits (230), Expect = 5e-20
Identities = 32/86 (37%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 244 YPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIKQY-WQHDFAQAIATVA 302
+EK +HEKYD I DIALLKL R V F I+PICLPI + + V
Sbjct: 204 VGIEKHLIHEKYDARHIMHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVT 263
Query: 303 GWGYYTYTTAISNAKNTLKFPGMSLQ 328
GWG T + S+ P
Sbjct: 264 GWG-TTENGSSSDVLLQANVPLQPRS 288
Score = 43.3 bits (102), Expect = 3e-04
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 477 KLSTVLRKLKVKVWSQAECLD-YDPEV-EKQICAGGEKG 513
S VL + V + ++ C Y V Q+C GG
Sbjct: 272 SSSDVLLQANVPLQPRSACSQAYRRAVPLSQLCVGGGDL 310
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
...
Length = 254
Score = 88.1 bits (219), Expect = 1e-19
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 228 VKLGAHYLSSQLNNAV-YPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
LG H LS + V + + Y DIALL+L + V T+ + P+CLP
Sbjct: 54 AVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPE 113
Query: 287 KQYWQHDF-AQAIATVAGWGYYTYTTAISN 315
+ + + + V+GWG A +
Sbjct: 114 RTFSERTLAFVRFSLVSGWGQLLDRGATAL 143
Score = 34.9 bits (81), Expect = 0.082
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 7/47 (14%)
Query: 477 KLSTVLRKLKVKVWSQAEC------LDYDPEV-EKQICAGGEKGNVD 516
+ L L V +C + P + E CAG G+ D
Sbjct: 140 ATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKD 186
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 86.8 bits (216), Expect = 2e-19
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 228 VKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIK 287
V +G +YLS + VY VE +++ YD +++D+AL+ L ++F + +QPI L
Sbjct: 54 VHVGTNYLSE--SGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTN 111
Query: 288 QYWQHDFAQAIATVAGWGYYTYTTAISN 315
D T+ GWG N
Sbjct: 112 ---DEDLESNPCTLTGWGSTRLGGNTPN 136
Score = 41.0 bits (97), Expect = 7e-04
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 478 LSTVLRKLKVKVWSQAECLDYDPEV-EKQICAGGEKG 513
L+++++ V Q +C V + IC ++G
Sbjct: 134 TPNALQEIELIVHPQKQCERDQWRVIDSHICTLTKRG 170
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen,
secreted, protease, hydrolase, polymorphism,
glycoprotein, gamma-carboxyglutamic acid; HET: BI7;
1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A*
2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D
2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B*
1lqd_B* 1nfu_A* 1nfw_A* ...
Length = 241
Score = 86.9 bits (216), Expect = 3e-19
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Query: 228 VKLGAHYLSSQLNNAV-YPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V++G + + VE H ++ K DIA+L+L + F + P CLP
Sbjct: 52 VRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPE 111
Query: 287 KQYWQHDF-AQAIATVAGWGYYTYTTAISN 315
+ + + Q V+G+G S
Sbjct: 112 RDWAESTLMTQKTGIVSGFGRTHEKGEQST 141
Score = 38.3 bits (90), Expect = 0.005
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 477 KLSTVLRKLKVKVWSQAECLD-YDPEV-EKQICAGGEKGNVD 516
+ ST L+ L+V + C + + CAG + D
Sbjct: 138 EQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQED 179
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 86.5 bits (215), Expect = 4e-19
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 228 VKLGAHYLSSQLNNAV-YPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
+ +G H S+ + V+ F++E YD A +++D++++K + F + PIC P
Sbjct: 55 LVVGEHDSSAASTVRQTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICAPD 114
Query: 287 KQYWQHDFAQAIATVAGWGY 306
+D+ + +GWG
Sbjct: 115 P---ANDYVYRKSQCSGWGT 131
Score = 35.7 bits (83), Expect = 0.037
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 476 PKLSTVLRKLKVKVWSQAECLD--YDPEV-EKQICAGGEKGNV 515
VLR + + + + A C + + ICA G
Sbjct: 137 VCCPAVLRYVTLNITTNAFCDAVYTSDTIYDDMICATDNTGMT 179
>1aut_C Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2
PDB: 3f6u_H*
Length = 250
Score = 85.8 bits (213), Expect = 9e-19
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 228 VKLGAHYLSSQLNNAV-YPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V+LG + L + +++ F+H Y K+ +DIALL L + + I PICLP
Sbjct: 52 VRLGEYDLRRWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPD 111
Query: 287 KQYWQHDFAQA--IATVAGWGY--YTYTTAISNAKNTLK 321
+ + QA V GWGY A N L
Sbjct: 112 SGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLN 150
Score = 34.2 bits (79), Expect = 0.12
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 472 PGKDPKLSTVLRKLKVKVWSQAECLD-YDPEV-EKQICAGGEKGNVD 516
+ VL +K+ V EC + V E +CAG D
Sbjct: 139 KEAKRNRTFVLNFIKIPVVPHNECSEVMSNMVSENMLCAGILGDRQD 185
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S
3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Length = 235
Score = 84.9 bits (211), Expect = 1e-18
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 228 VKLGAHYLSSQLNNAV-YPVEKTFLHEKYDKAE--IKSDIALLKLGRKVQFTNFIQPICL 284
V G H + + V + H ++ A DIALL+L + +++ PIC+
Sbjct: 51 VVAGEHNIEETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICI 110
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISN 315
K+Y V+GWG + +
Sbjct: 111 ADKEYTNIFLKFGSGYVSGWGRVFHKGRSAL 141
Score = 36.8 bits (86), Expect = 0.015
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 477 KLSTVLRKLKVKVWSQAECLD-YDPEV-EKQICAGGEKGNVD 516
+ + VL+ L+V + +A CL + CAG +G D
Sbjct: 138 RSALVLQYLRVPLVDRATCLRSTKFTITNNMFCAGFHEGGRD 179
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA
inhibitor complex, covalent inhibitor, alternative
splicing, blood coagulation; HET: INH; 1.60A {Homo
sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A*
1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A*
1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A*
2fda_A* ...
Length = 238
Score = 84.9 bits (211), Expect = 1e-18
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 228 VKLGAHYLSSQLNNAV-YPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V G S + + V++ +H++Y AE DIALLKL V +T+ +PI LP
Sbjct: 57 VYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPS 116
Query: 287 KQYWQHDF-AQAIATVAGWGYYTYTTAISN 315
K V GWGY I N
Sbjct: 117 K---GERNVIYTDCWVTGWGYRKLRDKIQN 143
Score = 34.5 bits (80), Expect = 0.11
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 477 KLSTVLRKLKVKVWSQAEC--LDYDPEV-EKQICAGGEKGNVD 516
K+ L+K K+ + + EC ++ K ICAG +G D
Sbjct: 140 KIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKD 182
>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B*
1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B
1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...
Length = 131
Score = 81.5 bits (202), Expect = 1e-18
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 228 VKLGAHYLSSQLNNAVY-PVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V G S + K F + KY+ I +DI LLKL F+ + +CLP
Sbjct: 51 VVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPS 110
Query: 287 KQYWQHDFAQ-AIATVAGWGY 306
DFA GWG
Sbjct: 111 A---SDDFAAGTTCVTTGWGL 128
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor;
mutagenically deglycosyalted human plasma kallikrein
protease domain; HET: BAM; 1.40A {Homo sapiens} PDB:
2anw_A*
Length = 241
Score = 84.6 bits (210), Expect = 2e-18
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 228 VKLGAHYLSSQLNNAV-YPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
+ G LS + +++ +H+ Y +E DIAL+KL +++T F +PI LP
Sbjct: 57 IYSGILELSDITKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPS 116
Query: 287 KQYWQHDF-AQAIATVAGWGYYTYTTAISN 315
K V GWG+ I N
Sbjct: 117 K---GDTSTIYTNCWVTGWGFSKEKGEIQN 143
Score = 34.1 bits (79), Expect = 0.14
Identities = 10/43 (23%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 477 KLSTVLRKLKVKVWSQAEC--LDYDPEV-EKQICAGGEKGNVD 516
++ +L+K+ + + + EC D ++ ++ +CAG ++G D
Sbjct: 140 EIQNILQKVNIPLVTNEECQKRYQDYKITQRMVCAGYKEGGKD 182
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 87.2 bits (216), Expect = 2e-18
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 228 VKLGAHYLSSQLNNA---VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICL 284
++ G ++ + + +H ++ + +D+ALL L R + + I ICL
Sbjct: 193 IRAGEWDTLTEKERLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGTICL 252
Query: 285 PIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLK 321
P + F +GWG + N LK
Sbjct: 253 PQQ---SQIFDSTECFASGWG-KKEFGSRHRYSNILK 285
Score = 41.4 bits (97), Expect = 0.001
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 473 GKDPKLSTVLRKLKVKVWSQAEC--------LDYDPEV-EKQICAGGEKG 513
G + S +L+K+++ + +C L + + +CAGGE+G
Sbjct: 275 GSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQG 324
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 83.8 bits (208), Expect = 2e-18
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Query: 228 VKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIK 287
V LG+ AV E+ H ++ +D+AL+K+ V++T+ IQPI LP
Sbjct: 55 VYLGSAVQYE--GEAVVNSERIISHSMFNPDTYLNDVALIKI-PHVEYTDNIQPIRLPSG 111
Query: 288 QYWQHDFAQAIATVAGWGY---------YTYTTAISNA 316
+ + F ATV+GWG YTY I N
Sbjct: 112 EELNNKFENIWATVSGWGQSNTDTVILQYTYNLVIDND 149
Score = 34.5 bits (80), Expect = 0.084
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 479 STVLRKLKVKVWSQAECLDYDPE---VEKQICAGGEKG 513
+ +L+ V C P VE IC G
Sbjct: 135 TVILQYTYNLVIDNDRCAQEYPPGIIVESTICGDTSDG 172
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine
proteinase, C-terminal peptidase; 2.35A {Bos taurus}
SCOP: b.47.1.2
Length = 251
Score = 83.8 bits (208), Expect = 4e-18
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 228 VKLGAHYLSSQLNNA--VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
V LG + L + V+ F+HEK++ +++DIAL+KL V+ + IQ CLP
Sbjct: 68 VALGKNNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLP 127
Query: 286 IKQYWQHDFAQ-AIATVAGWGYYTYTTAISN 315
+ Q V GWG I+
Sbjct: 128 SE---GSLLPQDYPCFVTGWGRLYTNGPIAA 155
Score = 31.4 bits (72), Expect = 0.88
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 477 KLSTVLRKLKVKVWSQAECLD---YDPEV-EKQICAGGEKGNVD 516
++ L++ V A C + V E +CAGG+ G +
Sbjct: 152 PIAAELQQGLQPVVDYATCSQRDWWGTTVKETMVCAGGD-GVIS 194
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 83.5 bits (207), Expect = 4e-18
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 227 EVKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAE---IKSDIALLKLGRKVQFTNFIQPIC 283
+V LG + + +P+ + +H Y + E + DIALL+L V + PIC
Sbjct: 55 DVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPIC 114
Query: 284 LPIKQYWQHDF-AQAIATVAGWGY 306
LP + + V+G+G
Sbjct: 115 LPDN---DTFYDLGLMGYVSGFGV 135
Score = 34.2 bits (79), Expect = 0.11
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 7/47 (14%)
Query: 477 KLSTVLRKLKVKVWSQAEC------LDYDPEV-EKQICAGGEKGNVD 516
K++ LR +++ V + C + + CAG D
Sbjct: 139 KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQD 185
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 84.3 bits (209), Expect = 4e-18
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 17/115 (14%)
Query: 228 VKLGAHYLSSQLNNAV------------YPVEKTFLHEKYDKA--EIKSDIALLKLGRKV 273
V+LG ++ + +E+T H Y + DIAL++L R+V
Sbjct: 84 VRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQV 143
Query: 274 QFTNFIQPICLPIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKFPGMSLQ 328
+FTN+I+P+CLP + TV GWG T T S K L P + +
Sbjct: 144 EFTNYIRPVCLPQPN--EEVQVGQRLTVVGWG-RTETGQYSTIKQKLAVPVVHAE 195
Score = 41.9 bits (99), Expect = 5e-04
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 477 KLSTVLRKLKVKVWSQAECLD-YDPE----VEKQICAGGEKG 513
+ ST+ +KL V V +C + Q+CAGGEK
Sbjct: 179 QYSTIKQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAGGEKA 220
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 84.3 bits (209), Expect = 5e-18
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 228 VKLGAHYLSSQLNNAVYP------VEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQP 281
+ GA + N V P VEK +HEKY + +DIAL+K+ V +FI P
Sbjct: 60 LIFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGP 119
Query: 282 ICLPIKQYWQHDFAQA--IATVAGWGY 306
CLP ++ + VAGWG+
Sbjct: 120 GCLP---QFRAGPPRVPQTCWVAGWGF 143
Score = 35.4 bits (82), Expect = 0.066
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 474 KDPKLSTVLRKLKVKVWSQAEC---LDYDPEV-EKQICAGGEKGNVD 516
+ S +L++ +V + C Y+ + +CAG +G +D
Sbjct: 147 NARRTSPMLQEARVDLIDLGLCNSTRWYNGRIRSTNVCAGYPEGKID 193
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 82.6 bits (205), Expect = 5e-18
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 228 VKLGAHYLSSQLNNA-VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V LGA+ L + + + YD + +D+ LL+L R+ T+ + + LP+
Sbjct: 53 VVLGAYDLRRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPL 112
Query: 287 KQYWQHDFAQ-AIATVAGWGYYTYTTAISN 315
+ VAGWG +S
Sbjct: 113 Q---NATVEAGTRCQVAGWGSQRSGGRLSR 139
Score = 35.2 bits (82), Expect = 0.053
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 6/40 (15%)
Query: 477 KLSTVLRKLKVKVWSQAECLDYDPEVEKQICAGGEKGNVD 516
+LS R + V V + +C +C G
Sbjct: 136 RLSRFPRFVNVTVTPEDQCRPN------NVCTGVLTRRGG 169
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase;
2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Length = 240
Score = 82.6 bits (205), Expect = 8e-18
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 227 EVKLGAHYLSSQLNNA-VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
V LGAH LS + ++K + +DI L+KL + ++ + +
Sbjct: 55 TVVLGAHSLSKNEASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIR 114
Query: 286 IKQYWQHDF-AQAIATVAGWGY 306
+ + V GWG
Sbjct: 115 ----SKTSLRSGTKCKVTGWGA 132
Score = 34.5 bits (80), Expect = 0.087
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 474 KDPKLSTVLRKLKVKVWSQAEC-----LDYDPEV-EKQICAGGEKGNVD 516
+ S LR++ V V S+ C + DP + + +CAG KG D
Sbjct: 136 DSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGDAKGQKD 184
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 82.7 bits (205), Expect = 9e-18
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 228 VKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIK 287
V+L +L + + PV + +H ++ + +DIALL+L V ++ + + LP
Sbjct: 58 VQLREQHLYY--QDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPA 115
Query: 288 QYWQHDF-AQAIATVAGWGY 306
F V GWG
Sbjct: 116 ---SETFPPGMPCWVTGWGD 132
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 83.6 bits (207), Expect = 9e-18
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 228 VKLGAHYLSSQLNNA--VYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 91 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 150
Query: 285 PIKQYWQHDF-AQAIATVAGWGY 306
P ++ A V GWG
Sbjct: 151 PDRETAASLLQAGYKGRVTGWGN 173
Score = 33.9 bits (78), Expect = 0.19
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 477 KLSTVLRKLKVKVWSQAECLD-YDPEV-EKQICAG---GEKGNVD 516
+VL+ + + + + C D + + CAG E D
Sbjct: 185 GQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGD 229
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 82.2 bits (204), Expect = 1e-17
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 228 VKLGAHYLSSQLNNA--VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
LG H S+ + +++ ++ Y++ +DIA++ L KV +T++IQPI LP
Sbjct: 55 AILGLHMKSNLTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLP 114
Query: 286 IKQYWQHDF-AQAIATVAGWGYYTYTTAISN 315
+ F ++AGWG Y ++
Sbjct: 115 EE---NQVFPPGRNCSIAGWGTVVYQGTTAD 142
Score = 36.4 bits (85), Expect = 0.025
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 477 KLSTVLRKLKVKVWSQAEC--LDYDPEV-EKQICAGGEKGNVD 516
+ +L++ V + S C + + E ICAG E+G +D
Sbjct: 139 TTADILQEADVPLLSNERCQQQMPEYNITENMICAGYEEGGID 181
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 242
Score = 82.3 bits (204), Expect = 1e-17
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 228 VKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICLPI 286
+++G S + E F+HE Y +DIAL+KL KV + I PICLP
Sbjct: 53 IRMGTLKRLSP-HYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPR 111
Query: 287 KQYWQHDFAQAIATVAGWGY 306
K+ I T +GWG
Sbjct: 112 KEAESFMRTDDIGTASGWGL 131
Score = 36.1 bits (84), Expect = 0.029
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 8/48 (16%)
Query: 477 KLSTVLRKLKVKVWSQAEC-------LDYDPEV-EKQICAGGEKGNVD 516
L+ L + + + +C V +CAG E G D
Sbjct: 136 FLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKD 183
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 82.7 bits (205), Expect = 1e-17
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 228 VKLGAHYLSSQLNNA--VYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 285 PIKQYWQHDF-AQAIATVAGWGY 306
P ++ A V GWG
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGN 143
Score = 32.7 bits (75), Expect = 0.39
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 477 KLSTVLRKLKVKVWSQAECLD-YDPEV-EKQICAG---GEKGNVD 516
+VL+ + + + + C D + + CAG E D
Sbjct: 155 GQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGD 199
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 84.9 bits (210), Expect = 2e-17
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 228 VKLGAHYLSSQLNNA--VYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICL 284
V++G H + N + +EK ++H +Y+ E + DIAL+KL + V F+++I P+CL
Sbjct: 226 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 285
Query: 285 PIKQYWQHDF-AQAIATVAGWGY 306
P ++ A V GWG
Sbjct: 286 PDRETAASLLQAGYKGRVTGWGN 308
Score = 34.1 bits (78), Expect = 0.21
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 477 KLSTVLRKLKVKVWSQAECLD-YDPEV-EKQICAG---GEKGNVD 516
+VL+ + + + + C D + + CAG E D
Sbjct: 320 GQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGD 364
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor
complex, serine proteinase, benzamidine phosphonate,
serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens}
PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A*
3p8g_A* 3p8f_A*
Length = 241
Score = 81.5 bits (202), Expect = 2e-17
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 227 EVKLGAHYLSSQLNNAV--YPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICL 284
LG H S + V +++ H ++ DIALL+L + ++++ ++PI L
Sbjct: 59 TAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISL 118
Query: 285 PIKQYWQHDF-AQAIATVAGWGYYTYTTAISN 315
P H F A V GWG+ Y +
Sbjct: 119 PDA---SHVFPAGKAIWVTGWGHTQYGGTGAL 147
Score = 38.7 bits (91), Expect = 0.004
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 477 KLSTVLRKLKVKVWSQAEC-LDYDPEV-EKQICAGGEKGNVD 516
+ +L+K +++V +Q C ++ + +C G G VD
Sbjct: 144 TGALILQKGEIRVINQTTCENLLPQQITPRMMCVGFLSGGVD 185
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 82.4 bits (204), Expect = 2e-17
Identities = 16/86 (18%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 222 VRFHAEVKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQP 281
H + + ++ + + + + +H +YD ++D++LL+L +Q P
Sbjct: 96 SLLHRNITVKTYFNRTSQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLP 155
Query: 282 ICLPIKQYWQHDF-AQAIATVAGWGY 306
+C P K + +H + ++GW
Sbjct: 156 VCTPEKDFAEHLLIPRTRGLLSGWAR 181
Score = 33.9 bits (78), Expect = 0.18
Identities = 7/38 (18%), Positives = 10/38 (26%), Gaps = 2/38 (5%)
Query: 477 KLSTVLRKLKVKVWSQAECLD-YDPEV-EKQICAGGEK 512
L L V + EC + V + C
Sbjct: 185 DLGNSLTTRPVTLVEGEECGQVLNVTVTTRTYCERSSV 222
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 81.1 bits (201), Expect = 2e-17
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 228 VKLGAHYLSSQLNNA-VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V LGAH LS + +Y V + H I D+ LL+L K ++P+
Sbjct: 53 VLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQR 112
Query: 287 KQYWQHDF-AQAIATVAGWGYYTYTTAISN 315
D + VAGWG + +
Sbjct: 113 V---DRDVAPGTLCDVAGWGIVNHAGRRPD 139
Score = 29.8 bits (68), Expect = 3.1
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 478 LSTVLRKLKVKVWSQAEC---LDYDPEV-EKQICAGGEKGNVD 516
L+ + + V +A C +D + E+ +CA D
Sbjct: 137 RPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAES--NRRD 177
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI,
protein-protein interaction, non-cognate binding, S1
pocket, primary specificity; 1.70A {Bos taurus} SCOP:
b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E
1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A
1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Length = 245
Score = 81.5 bits (202), Expect = 2e-17
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 228 VKLGAHYLSSQLNNAV-YPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V G S + K F + KY+ I +DI LLKL F+ + +CLP
Sbjct: 66 VVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPS 125
Query: 287 KQYWQHDFAQ-AIATVAGWGYYTYT 310
DFA GWG YT
Sbjct: 126 A---SDDFAAGTTCVTTGWGLTRYT 147
Score = 31.0 bits (71), Expect = 1.3
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 475 DPKLSTVLRKLKVKVWSQAECLD-YDPEV-EKQICAGGEKGNVD 516
+ L++ + + S C + ++ + ICAG V
Sbjct: 148 NANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAGA--SGVS 189
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine
proteinases, trypsin-like serine protease, tumor marker,
hydrolase; 1.61A {Homo sapiens}
Length = 232
Score = 81.1 bits (201), Expect = 2e-17
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 228 VKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIK 287
G S++ + + +HEKY DI+L +L V +TN + +CLP
Sbjct: 54 ASFGVTIKPSKM---KRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDA 110
Query: 288 QYWQHDF-AQAIATVAGWGY 306
++F + V G+G
Sbjct: 111 ---SYEFQPGDVMFVTGFGA 127
Score = 37.5 bits (88), Expect = 0.011
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 477 KLSTVLRKLKVKVWSQAEC---LDYDPEV-EKQICAGGEKGNVD 516
LR+ +V + C Y+ + + +CAG +G D
Sbjct: 133 YSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLCAGSLEGKTD 176
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 82.9 bits (205), Expect = 3e-17
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 228 VKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKS---DIALLKLGRKVQFTNFIQPICL 284
V LG + + +P+ + +H Y + E + DIALL+L V + PICL
Sbjct: 145 VFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICL 204
Query: 285 PIKQYWQHDF-AQAIATVAGWGY 306
P + + V+G+G
Sbjct: 205 PDN---DTFYDLGLMGYVSGFGV 224
Score = 35.1 bits (81), Expect = 0.091
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 7/47 (14%)
Query: 477 KLSTVLRKLKVKVWSQAEC------LDYDPEV-EKQICAGGEKGNVD 516
K++ LR +++ V + C + + CAG D
Sbjct: 228 KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQD 274
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 81.6 bits (202), Expect = 3e-17
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 228 VKLGAHYLSSQLNNAV-YPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
VKLGAH L S +A ++ H Y + + DIALL+L R + F+ +I+PI LP
Sbjct: 54 VKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPA 113
Query: 287 KQYWQHDF-AQAIATVAGWGY 306
Q F TV GWG+
Sbjct: 114 A---QASFPNGLHCTVTGWGH 131
Score = 29.9 bits (68), Expect = 2.6
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 10/57 (17%)
Query: 470 IVPGKDPKLSTVLRKLKVKVWSQAEC-----LDYDPEVEKQI-----CAGGEKGNVD 516
+ P L++L+V + S+ C +D PE + CAG +G D
Sbjct: 132 VAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKD 188
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC
MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB:
1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Length = 227
Score = 80.6 bits (200), Expect = 3e-17
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 228 VKLGAHYLSSQLNNA-VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V LGAH + Q PV++ H Y+ +DI LL+L RK + T +QP+ LP
Sbjct: 52 VTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPS 111
Query: 287 KQYWQHDFAQAIATVAGWGY 306
+ +VAGWG
Sbjct: 112 NK--AQVKPGQTCSVAGWGQ 129
Score = 37.5 bits (88), Expect = 0.011
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 477 KLSTVLRKLKVKVWSQAECLDYDPEV---EKQICAGGEKGNVD 516
K S L+++K+ V +C ++C G +
Sbjct: 135 KHSHTLQEVKMTVQEDRKCESDLRHYYDSTIELCVGDPEIKKT 177
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 80.6 bits (200), Expect = 3e-17
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 228 VKLGAHYLSSQLNNA-VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V LGAH + + + VEK +HE Y+ DI LLKL +KV+ T + + LP
Sbjct: 53 VILGAHDVRKRESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPS 112
Query: 287 KQYWQHDFAQAIATVAGWGYYTYTTAISN 315
+ H A+ AGWG S
Sbjct: 113 PSDFIH--PGAMCWAAGWGKTGVRDPTSY 139
Score = 37.9 bits (89), Expect = 0.006
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 477 KLSTVLRKLKVKVWSQAECLDYDPEV-EKQICAGGEKGNVD 516
S LR++++++ + C+DY + Q+C G
Sbjct: 136 PTSYTLREVELRIMDEKACVDYRYYEYKFQVCVGSPTTLRA 176
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 85.3 bits (211), Expect = 3e-17
Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 228 VKLGAHYLSSQLNNAV-YPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V G S + + V++ +H++Y AE DIALLKL V +T+ +PICLP
Sbjct: 444 VYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPS 503
Query: 287 KQYWQHDF-AQAIATVAGWGYYTYTTAISN 315
K V GWGY I N
Sbjct: 504 K---GDRNVIYTDCWVTGWGYRKLRDKIQN 530
Score = 35.6 bits (82), Expect = 0.066
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 477 KLSTVLRKLKVKVWSQAECLD--YDPEV-EKQICAGGEKGNVD 516
K+ L+K K+ + + EC ++ K ICAG +G D
Sbjct: 527 KIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKD 569
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic
resolution, hydrolase/hydrolase inhibitor complex; 1.20A
{Pontastacus leptodactylus} SCOP: b.47.1.2
Length = 237
Score = 80.7 bits (200), Expect = 3e-17
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 228 VKLGAHYLSSQLNNAV-YPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
+ G +S + V K LHE +D + +DI+LLKL + F + + PI LP
Sbjct: 60 IVAGELDMSVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPE 119
Query: 287 KQYWQHDFAQAIATVAGWGYYTYTTAISN 315
+ A V GWG + +
Sbjct: 120 QG----HTATGDVIVTGWGTTSEGGNTPD 144
Score = 37.6 bits (88), Expect = 0.009
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 477 KLSTVLRKLKVKVWSQAECLDYDPE---VEKQICAGGEKGNVD 516
VL+K+ V + S +C ++ ICAG +G D
Sbjct: 141 NTPDVLQKVTVPLVSDEDCRADYGADEILDSMICAGVPEGGKD 183
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 80.8 bits (200), Expect = 4e-17
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 228 VKLGAHYLSSQLNNAVYPVEKTFLHEKYDK--AEIKSDIALLKLGRKVQFTNFIQPICLP 285
V G S V+ +HE Y A +DIA+L L + IQ LP
Sbjct: 56 VIAGLWQQSDTSGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLP 115
Query: 286 IKQYWQHDFAQAIATVAGWGYYTYTTAISN 315
+D+A ++GWG T + +
Sbjct: 116 ANN--NNDYAGTTCVISGWGRTDGTNNLPD 143
Score = 38.8 bits (91), Expect = 0.004
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 478 LSTVLRKLKVKVWSQAEC-----LDYDPEV-EKQICAGGEKGNVD 516
L +L+K + V + A+C + + IC GN
Sbjct: 141 LPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHICVQDPAGNTG 185
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 83.3 bits (206), Expect = 4e-17
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 228 VKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKS---DIALLKLGRKVQFTNFIQPICL 284
V LG + + +P+ + +H Y + E + DIALL+L V + PICL
Sbjct: 213 VFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICL 272
Query: 285 PIKQYWQHDF-AQAIATVAGWGY 306
P + + V+G+G
Sbjct: 273 PDN---DTFYDLGLMGYVSGFGV 292
Score = 35.6 bits (82), Expect = 0.065
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 7/47 (14%)
Query: 477 KLSTVLRKLKVKVWSQAEC------LDYDPEV-EKQICAGGEKGNVD 516
K++ LR +++ V + C + + CAG D
Sbjct: 296 KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQD 342
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG;
2.40A {Bos taurus} SCOP: b.47.1.2
Length = 227
Score = 80.2 bits (199), Expect = 4e-17
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 227 EVKLGAHYLSSQLNNA-VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
V LGAH + + V PV + H Y+ + +DI LLKL RK T+ + PI LP
Sbjct: 51 NVTLGAHNIMERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLP 110
Query: 286 IKQYWQHDFAQAIATVAGWGYYTYTTAISN 315
+ + +VAGWG ++
Sbjct: 111 --RSLAEVKPGMMCSVAGWGRLGVNMPSTD 138
Score = 35.6 bits (83), Expect = 0.043
Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 477 KLSTVLRKLKVKVWSQAECLD-YDPEV-EKQICAGGEKGNVD 516
+ L+++ ++V S+ +C+ + + QICAG +
Sbjct: 135 PSTDKLQEVDLEVQSEEKCIARFKNYIPFTQICAGDPSKRKN 176
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 80.8 bits (200), Expect = 5e-17
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 228 VKLGAHYLSSQLNNAV-YPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
+ LG H+ N V+ T LH +YD ++D+AL++L F+ PICLP
Sbjct: 68 IILGKHWRLRSDENEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFVMPICLPE 127
Query: 287 KQYWQHDFAQAIATVAGWGY 306
A+ V+GWG
Sbjct: 128 GPQ----QEGAMVIVSGWGK 143
Score = 37.7 bits (88), Expect = 0.010
Identities = 8/44 (18%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 478 LSTVLRKLKVKVWSQAECLDYDPEVEKQI-----CAGGEKGNVD 516
L ++++ + + C ++K++ CAG ++G D
Sbjct: 149 FPETLMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKD 192
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease,
zymogen; 2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 80.3 bits (199), Expect = 5e-17
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 228 VKLGAHYLSSQLNNA-VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V LGAH + ++ + PV K H Y+ + +DI LLKL R + T ++P+ LP
Sbjct: 53 VTLGAHNIKAKEETQQIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPR 112
Query: 287 KQYWQHDFAQAIATVAGWGYYTYTTAISN 315
+ H VAGWG T
Sbjct: 113 RN--AHVKPGDECYVAGWGKVTPDGEFPK 139
Score = 33.6 bits (78), Expect = 0.16
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 3/43 (6%)
Query: 477 KLSTVLRKLKVKVWSQAECLDYDPEV---EKQICAGGEKGNVD 516
+ L ++K+ V C +IC G K
Sbjct: 136 EFPKTLHEVKLTVQKDQVCESQFQSSYNRANEICVGDSKIKGA 178
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 79.5 bits (197), Expect = 6e-17
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 228 VKLGAHYLSSQLNNA-VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V LGAH + + N + H +Y++ I++DI LL+L R+V+ + P+ LP
Sbjct: 52 VTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPR 111
Query: 287 KQYWQHDFAQAIATVAGWG 305
Q + + TVAGWG
Sbjct: 112 AQ--EGLRPGTLCTVAGWG 128
Score = 36.3 bits (85), Expect = 0.021
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 474 KDPKLSTVLRKLKVKVWSQAECLDYDPEV--EKQICAGGEKGNVD 516
+ + LR+++++V +CL +QIC G +
Sbjct: 131 SMRRGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKA 175
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 81.7 bits (202), Expect = 7e-17
Identities = 16/86 (18%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 222 VRFHAEVKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQP 281
H + + ++ + + + + +H +YD ++D++LL+L +Q P
Sbjct: 137 SLLHRNITVKTYFNRTSQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLP 196
Query: 282 ICLPIKQYWQHDF-AQAIATVAGWGY 306
+C P K + +H + ++GW
Sbjct: 197 VCTPEKDFAEHLLIPRTRGLLSGWAR 222
Score = 32.4 bits (74), Expect = 0.55
Identities = 7/38 (18%), Positives = 10/38 (26%), Gaps = 2/38 (5%)
Query: 477 KLSTVLRKLKVKVWSQAECLD-YDPEV-EKQICAGGEK 512
L L V + EC + V + C
Sbjct: 226 DLGNSLTTRPVTLVEGEECGQVLNVTVTTRTYCERSSV 263
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 79.5 bits (197), Expect = 7e-17
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 227 EVKLGAHYLSSQLNNA--VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICL 284
+ LG H L + + + H +Y++ + +D+ L+KL V ++ I+ I +
Sbjct: 48 TIGLGLHSLEADQEPGSQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISI 107
Query: 285 PIKQYWQHDFAQ-AIATVAGWGYYTYTT 311
V+GWG
Sbjct: 108 A-----SQCPTAGNSCLVSGWGLLANGR 130
Score = 36.4 bits (85), Expect = 0.019
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 474 KDPKLSTVLRKLKVKVWSQAECLD-YDPEV-EKQICAGGEKGNVD 516
+ ++ TVL+ + V V S+ C YDP CAGG + D
Sbjct: 127 ANGRMPTVLQCVNVSVVSEEVCSKLYDPLYHPSMFCAGGGQDQKD 171
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 79.1 bits (196), Expect = 9e-17
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 228 VKLGAHYLSSQLNNA--VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
V+LG + LS + ++ K+ H Y +D+ L+KL R+++ T ++PI +
Sbjct: 50 VRLGHYSLSPVYESGQQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVS 109
Query: 286 IKQYWQHDFAQ-AIATVAGWGY 306
H + V+GWG
Sbjct: 110 -----SHCPSAGTKCLVSGWGT 126
Score = 32.5 bits (75), Expect = 0.38
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 475 DPKLSTVLRKLKVKVWSQAECLD-YDPEV-EKQICAGGEKG 513
VL+ L + V SQ C D Y ++ + CAG + G
Sbjct: 131 QVHFPKVLQCLNISVLSQKRCEDAYPRQIDDTMFCAGDKAG 171
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Length = 234
Score = 79.5 bits (197), Expect = 9e-17
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 227 EVKLGAHYLSSQLNNA-VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V LGAH ++ + + V+K F + YD A + D+ LL+L K + ++ + LP
Sbjct: 49 QVILGAHSITREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLP 108
Query: 286 IKQYWQHDFAQ-AIATVAGWG 305
K D + VAGWG
Sbjct: 109 KKGD---DVKPGTMCQVAGWG 126
Score = 37.9 bits (89), Expect = 0.008
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 477 KLSTVLRKLKVKVWSQAEC-----LDYDPEV-EKQICAGGEKGNVD 516
S LR++++ + + C +++P + +CAG +G D
Sbjct: 133 SWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRD 178
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 79.6 bits (197), Expect = 9e-17
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 228 VKLGAHYLSSQLNNAVY-PVEKTFLHEKYDKAEIKS--DIALLKLGRKVQFTNFIQPICL 284
V LG H LS+ ++ V K +H+ ++ ++ + DIALLKL V T+ IQ CL
Sbjct: 55 VVLGRHSLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCL 114
Query: 285 PIKQYWQHDF-AQAIATVAGWGYYTYTTAISN 315
P + V GWG A +
Sbjct: 115 PAA---GTILPNNYVCYVTGWGRLQTNGASPD 143
Score = 30.3 bits (69), Expect = 2.1
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 477 KLSTVLRKLKVKVWSQAEC---LDYDPEV-EKQICAGGEKGNVD 516
+L++ ++ V A C + V ICAGG+ G +
Sbjct: 140 ASPDILQQGQLLVVDYATCSKPGWWGSTVKTNMICAGGD-GIIS 182
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease,
fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Length = 252
Score = 79.7 bits (197), Expect = 1e-16
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 228 VKLGAHYLSSQLNNAV-YPVEKTFLHEKYDKAEIKSDIALLKL----GRKVQFTNFIQPI 282
V LG Y + VEK +H+++D +DIALL+L R Q ++ ++ +
Sbjct: 60 VILGRTYRVVPGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTV 119
Query: 283 CLPIKQYWQHDF-AQAIATVAGWGY 306
CLP ++G+G
Sbjct: 120 CLPPA---DLQLPDWTECELSGYGK 141
Score = 33.0 bits (76), Expect = 0.27
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 15/67 (22%)
Query: 474 KDPKLSTVLRKLKVKVWSQAEC---LDYDPEV-EKQICAGGEKGNVDVKEDLRFEEVDSS 529
P S L++ V+++ + C + V + +CAG + D+
Sbjct: 145 LSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQA-----NLHDA- 198
Query: 530 RRLTVCQ 536
CQ
Sbjct: 199 -----CQ 200
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 78.7 bits (195), Expect = 1e-16
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 227 EVKLGAHYLSSQLNNAV-YPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V LGAH + V +HE Y+ I +DIA+++L V T I + LP
Sbjct: 50 DVVLGAHNIREDEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLP 109
Query: 286 IKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKF 322
+ T GWG +A+ + + L+
Sbjct: 110 S----TDVGVGTVVTPTGWG-LPSDSALGIS-DVLRQ 140
Score = 36.3 bits (85), Expect = 0.021
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 476 PKLSTVLRKLKVKVWSQAECLDYDPEV-EKQICAGGEKG 513
+S VLR++ V + S A+C V + IC G
Sbjct: 132 LGISDVLRQVDVPIMSNADCDAVYGIVTDGNICIDSTGG 170
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 81.7 bits (202), Expect = 1e-16
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 228 VKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICLPI 286
+++G S + E F+HE Y +DIAL+KL KV + I PICLP
Sbjct: 214 IRMGTLKRLSP-HYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPR 272
Query: 287 KQYWQHDFAQAIATVAGWGY 306
K+ I T +GWG
Sbjct: 273 KEAESFMRTDDIGTASGWGL 292
Score = 36.7 bits (85), Expect = 0.028
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 8/48 (16%)
Query: 477 KLSTVLRKLKVKVWSQAEC-------LDYDPEV-EKQICAGGEKGNVD 516
L+ L + + + +C V +CAG E G D
Sbjct: 297 FLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKD 344
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 78.3 bits (194), Expect = 2e-16
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 228 VKLGAHYLSSQLNNA-VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V LGAH ++ + + V K F H KY+ + + DI LLKL K T + + P
Sbjct: 53 VTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPS 112
Query: 287 KQYWQHDFAQAIATVAGWGYYTYTTAISN 315
+ + + VAGWG S+
Sbjct: 113 QFNFVP--PGRMCRVAGWGRTGVLKPGSD 139
Score = 36.3 bits (85), Expect = 0.025
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 477 KLSTVLRKLKVKVWSQAECLDYDPEV-EKQICAGGEKGNVD 516
S L+++K+++ C + Q+C G +
Sbjct: 136 PGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKS 176
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 78.4 bits (194), Expect = 2e-16
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 7/92 (7%)
Query: 228 VKLGAHYLSSQLNNAV-YPVEKTFLHEKYDKAEIKS--DIALLKLGRKVQFTNFIQPICL 284
V LG H L++ V F+H ++ ++ DIALL+L + + +Q L
Sbjct: 55 VVLGEHNLNTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAAL 114
Query: 285 PIKQYWQHDFAQ-AIATVAGWGYYTYTTAISN 315
P + GWG + +S+
Sbjct: 115 PPS---NQILPNNNPCYITGWGKTSTGGPLSD 143
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 78.4 bits (194), Expect = 2e-16
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 228 VKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAE-IKSDIALLKLGRKVQFTNFIQPICLPI 286
+ LG H L S + ++ H +Y +++D+ALL+L KV+ + I+P+ LP
Sbjct: 52 LVLGLHTLDS--PGLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLALPS 109
Query: 287 KQYWQHDF-AQAIATVAGWGYYTYTTAISN 315
K + A ++AGWG +S
Sbjct: 110 K---RQVVAAGTRCSMAGWGLTHQGGRLSR 136
Score = 35.6 bits (83), Expect = 0.039
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 477 KLSTVLRKLKVKVWSQAEC---LDYDPEV-EKQICAGGEKGNVD 516
+LS VLR+L ++V C ++ + +C + +
Sbjct: 133 RLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVCLAADSKDQA 176
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 78.3 bits (194), Expect = 2e-16
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 228 VKLGAHYLSSQLNNAV--YPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+ LG H L +A+ +P EK F + DI L++L R V+ + I P+ LP
Sbjct: 48 IYLGMHNLKVLNKDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLP 107
Query: 286 IKQYWQHDFAQ-AIATVAGWGY 306
+ + ++ + GWG
Sbjct: 108 -----SNPPSVGSVCRIMGWGT 124
Score = 34.8 bits (81), Expect = 0.075
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 475 DPKLSTVLRKLKVKVWSQAECLDYDPEV-EKQICAGGEKGNVD 516
+ L V + + A C + +CAG +G D
Sbjct: 129 NATLPDVPHCANINILDYAVCQAAYKGLAATTLCAGILEGGKD 171
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease,
catalytic intermediate, atomic resolution,
hydrolase-hydrolase inhibitor complex; 0.94A {Sus
scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B*
1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A*
1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A*
1esa_A 1esb_A* 1est_A* ...
Length = 240
Score = 78.4 bits (194), Expect = 2e-16
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 228 VKLGAHYLSSQLNNAVY-PVEKTFLHEKYDKAEIKS--DIALLKLGRKVQFTNFIQPICL 284
V +G H L+ Y V+K +H ++ ++ + DIALL+L + V +++Q L
Sbjct: 55 VVVGEHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVL 114
Query: 285 PIKQYWQHDFAQ-AIATVAGWGYYTYTTAISN 315
P A + + GWG ++
Sbjct: 115 PRA---GTILANNSPCYITGWGLTRTNGQLAQ 143
Score = 30.2 bits (69), Expect = 2.3
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 477 KLSTVLRKLKVKVWSQAECLD---YDPEV-EKQICAGGEKGNVD 516
+L+ L++ + A C + V +CAGG+ G
Sbjct: 140 QLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGGD-GVRS 182
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 77.2 bits (191), Expect = 4e-16
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 227 EVKLGAHYLSSQLNNA-VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V LG H L + ++ V + +H YD A DI LL+L R + + IQP+ L
Sbjct: 48 QVFLGKHNLRQRESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLE 107
Query: 286 IKQYWQHDFAQ-AIATVAGWGY 306
+ A + GWG
Sbjct: 108 -----RDCSANTTSCHILGWGK 124
Score = 35.6 bits (83), Expect = 0.039
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 474 KDPKLSTVLRKLKVKVWSQAECLD-YDPEV-EKQICAGGEKGNVD 516
D ++ + + S+ EC Y ++ + +CAG EK D
Sbjct: 126 ADGDFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKD 170
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 77.2 bits (191), Expect = 4e-16
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 2/88 (2%)
Query: 228 VKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIK 287
V LGAH LS + + YD + +DI +L+L +Q LP +
Sbjct: 53 VVLGAHNLSRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQ 112
Query: 288 QYWQHDFAQAIATVAGWGYYTYTTAISN 315
+ GWG I++
Sbjct: 113 G--RRLGNGVQCLAMGWGLLGRNRGIAS 138
Score = 29.4 bits (67), Expect = 3.9
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 7/39 (17%)
Query: 478 LSTVLRKLKVKVWSQAECLDYDPEVEKQICAGGEKGNVD 516
+++VL++L V V + C +C
Sbjct: 136 IASVLQELNVTVVTS-LCRRS------NVCTLVRGRQAG 167
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 79.0 bits (195), Expect = 5e-16
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
Query: 228 VKLGAH--YLSSQLNNAVYPVEKTFLHEKYDKAEIKS-------DIALLKLGRKVQFTNF 278
+ +G+ S + + E F+H + + DIAL++L V+
Sbjct: 130 MYVGSTSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPT 189
Query: 279 IQPICLPIKQYWQHDFAQAIATVAGWGY 306
+ PICLP + + ++GWG
Sbjct: 190 VSPICLPGTSSDYNLMDGDLGLISGWGR 217
Score = 31.6 bits (72), Expect = 0.99
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 11/47 (23%)
Query: 478 LSTVLRKLKVKVWSQAEC----------LDYDPEV-EKQICAGGEKG 513
+ L+ ++ V +C ICAGGEKG
Sbjct: 223 RAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEKG 269
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 76.4 bits (189), Expect = 9e-16
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 227 EVKLGAHYLSSQLNNA-VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V++G + V+ VE H ++ K DIA+L+L + F + P LP
Sbjct: 51 KVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLP 110
Query: 286 IKQYWQHDF-AQAIATVAGWGY 306
++GWG
Sbjct: 111 -----TAPPATGTKCLISGWGN 127
Score = 32.9 bits (76), Expect = 0.31
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 475 DPKLSTVLRKLKVKVWSQAECLD-YDPEV-EKQICAGGEKGNVD 516
L+ L V SQA+C Y ++ C G +G D
Sbjct: 132 GADYPDELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKD 175
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus}
PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A
1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A*
1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A
...
Length = 223
Score = 76.0 bits (188), Expect = 9e-16
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 227 EVKLGAHYLSSQLNNA-VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V+LG ++ N K+ +H Y+ + +DI L+KL + + I LP
Sbjct: 47 QVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP 106
Query: 286 IKQYWQHDFAQ-AIATVAGWGY 306
+ ++GWG
Sbjct: 107 -----TSCASAGTQCLISGWGN 123
Score = 32.5 bits (75), Expect = 0.35
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 475 DPKLSTVLRKLKVKVWSQAECLD-YDPEV-EKQICAGGEKGNVD 516
VL+ LK + S + C Y ++ CAG +G D
Sbjct: 128 GTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKD 171
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate
conformations, alternative splicing, glycoprotein,
hydrolase, protease, secreted; HET: K7J; 1.00A {Homo
sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Length = 224
Score = 76.0 bits (188), Expect = 1e-15
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 227 EVKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V LG+ L + K+F H Y +D+ L+KL + + ++ ++ + LP
Sbjct: 48 TVHLGSDTLGDR-RAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLP- 105
Query: 287 KQYWQHDFAQ-AIATVAGWGY 306
TV+GWG
Sbjct: 106 ----SRCEPPGTTCTVSGWGT 122
Score = 32.9 bits (76), Expect = 0.27
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 475 DPKLSTVLRKLKVKVWSQAECLD-YDPEV-EKQICAGGEKGNVD 516
D + L + VK+ S +C Y + +CAG +
Sbjct: 127 DVTFPSDLMCVDVKLISPQDCTKVYKDLLENSMLCAGIPDSKKN 170
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 76.5 bits (189), Expect = 1e-15
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 228 VKLGAHYLSSQLNNAV-YPVEKTFLHEKYDKAEIKS-DIALLKL----GRKVQFTNFIQP 281
V LG H+ + + + +EK + Y D+ L++L R + F+QP
Sbjct: 53 VVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQP 112
Query: 282 ICLPIKQYWQHDF-AQAIATVAGWGY 306
ICLP F A +AGWG+
Sbjct: 113 ICLPEP---GSTFPAGHKCQIAGWGH 135
Score = 34.9 bits (81), Expect = 0.080
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 475 DPKLSTVLRKLKVKVWSQAEC---LDYDPEV-EKQICAGGEKGNVD 516
S+ LR+ V + + +C Y ++ +CAG D
Sbjct: 140 VSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSD 185
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 75.6 bits (187), Expect = 1e-15
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 228 VKLGAHYLSSQLNNA-VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V+LG H + + + H Y I +DI L+KL + ++QP+ LP
Sbjct: 48 VRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP- 106
Query: 287 KQYWQHDFAQ-AIATVAGWGYYTYTTAISN 315
+ TV+GWG +TA SN
Sbjct: 107 ----TSCAPAGTMCTVSGWGNTMSSTADSN 132
Score = 32.9 bits (76), Expect = 0.34
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 478 LSTVLRKLKVKVWSQAECLD-YDPEV-EKQICAGGEKGNVD 516
S L+ L + + S ++C + Y + CAG +G D
Sbjct: 130 DSNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKD 170
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 75.7 bits (187), Expect = 2e-15
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 8/80 (10%)
Query: 228 VKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIK 287
++ G+ +S + +H Y +D+A+LKL + I L
Sbjct: 53 IRAGSLSRTS--GGITSSLSSVRVHPSYSGNN--NDLAILKLSTSIPSGGNIGYARLAAS 108
Query: 288 QYWQHDFAQ-AIATVAGWGY 306
D + ATVAGWG
Sbjct: 109 ---GSDPVAGSSATVAGWGA 125
Score = 37.5 bits (88), Expect = 0.010
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 476 PKLSTVLRKLKVKVWSQAEC-LDYDPEV--EKQICAGGEKGNVD 516
L K+ V + S+A C Y + CAG G D
Sbjct: 131 SSTPVNLLKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKD 174
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 75.7 bits (187), Expect = 2e-15
Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 4/89 (4%)
Query: 228 VKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNF-IQPICLPI 286
++ + L P Y + +++DIA+L+L R ++ +P LP
Sbjct: 55 IQYESTNLWED-PGKSDPYVSHVYLSFYRQETMENDIAILELSRPLKLDGLKSKPAKLP- 112
Query: 287 KQYWQHDFAQAIATVAGWGYYTYTTAISN 315
+ V+G+G +
Sbjct: 113 -DIEFRPKTGSDVLVSGYGDGQTMDPKDH 140
Score = 35.3 bits (82), Expect = 0.059
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 5/43 (11%)
Query: 477 KLSTVLRKLKVKVWSQAEC-LDYDPEV--EKQICAGGEKGNVD 516
L+ ++ V EC Y P + CA K V
Sbjct: 137 PKDHDLKSAQLTVVDLDECRTKYGPIFLSLQVFCAQ--KVGVS 177
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine
esterase, glycosylation, extracellular; HET: NAG; 1.75A
{Agkistrodon halys}
Length = 238
Score = 75.7 bits (187), Expect = 2e-15
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 228 VKLGAHYLSSQLNNAV--YPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+KLG H + P EK F + DI L++L V+ + I P LP
Sbjct: 51 IKLGMHSKKVPNEDEQTRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIAPFSLP 110
Query: 286 IKQYWQHDF-AQAIATVAGWGY 306
++ + GWG
Sbjct: 111 -----SSPPSVGSVCRIMGWGR 127
Score = 33.7 bits (78), Expect = 0.19
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 5/47 (10%)
Query: 475 DPKLSTVLRKLKVKVWSQAECLDYDPEVEKQI-----CAGGEKGNVD 516
+ V + + + C PE E CAG +G D
Sbjct: 132 EGTYPDVPHCVNINLLEYEMCRAPYPEFELPATSRTLCAGILEGGKD 178
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 76.2 bits (188), Expect = 2e-15
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 228 VKLGAHYLSSQLNNAV-YPVEKTFLHEKYDKAEIKS-DIALLKL----GRKVQFTNFIQP 281
V LG H+ + + + +EK + Y D+ L++L R + F+QP
Sbjct: 88 VVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQP 147
Query: 282 ICLPIKQYWQHDF-AQAIATVAGWGY 306
ICLP F A +AGWG+
Sbjct: 148 ICLPEP---GSTFPAGHKCQIAGWGH 170
Score = 35.0 bits (81), Expect = 0.084
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 474 KDPKLSTVLRKLKVKVWSQAEC---LDYDPEV-EKQICAGGEKGNVD 516
S+ LR+ V + + +C Y ++ +CAG D
Sbjct: 174 NVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSD 220
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 75.8 bits (187), Expect = 3e-15
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 228 VKLGAHYLSSQLNNAV-YPVEKTFLHEKYDKAEIKS--DIALLKL----GRKVQFTNFIQ 280
V LG L+S + + VE LH+ Y + DIALLK+ GR Q + IQ
Sbjct: 82 VYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQ 141
Query: 281 PICLPIKQYWQHDF-AQAIATVAGWGY 306
ICLP +D + G+G
Sbjct: 142 TICLPSM---YNDPQFGTSCEITGFGK 165
Score = 36.5 bits (85), Expect = 0.025
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 475 DPKLSTVLRKLKVKVWSQAEC---LDYDPEV-EKQICAGGEKGNVD 516
D L+ VK+ S EC Y EV K +CA + D
Sbjct: 170 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTD 215
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 75.0 bits (185), Expect = 4e-15
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 228 VKLGAHYLSSQLNNAV-YPVEKTFLHEKYDKAEIKS--DIALLKL----GRKVQFTNFIQ 280
V LG L+S + + VE LH+ Y + DIALLK+ GR Q + IQ
Sbjct: 59 VYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQ 118
Query: 281 PICLPIKQYWQHDF-AQAIATVAGWGY 306
I LP +D + G+G
Sbjct: 119 TISLPSM---YNDPQFGTSCEITGFGK 142
Score = 36.5 bits (85), Expect = 0.021
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 475 DPKLSTVLRKLKVKVWSQAEC---LDYDPEV-EKQICAGGEKGNVD 516
D L+ VK+ S EC Y EV K +CA + D
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTD 192
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A
{Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A
1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 76.7 bits (189), Expect = 5e-15
Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 228 VKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKS------DIALLKLGRKVQFTNFIQP 281
V GA +S + V+ H Y + DIAL+ L + T +IQP
Sbjct: 172 VFAGAVAQASP-HGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQP 230
Query: 282 ICLPIKQYWQHDF-AQAIATVAGWGYYTYTTAISN 315
+CLP I TV GWG Y +
Sbjct: 231 VCLPAA---GQALVDGKICTVTGWGNTQYYGQQAG 262
Score = 33.9 bits (78), Expect = 0.20
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 477 KLSTVLRKLKVKVWSQAEC---LDYDPEV-EKQICAGGEKGNVD 516
+ + VL++ +V + S C Y ++ K CAG +G +D
Sbjct: 259 QQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGID 302
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 74.1 bits (183), Expect = 5e-15
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 228 VKLGAHYLSSQLNNA-VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V LGAH + +Q + V + FL+ YD +DI L++L + + + LP
Sbjct: 56 VVLGAHNVRTQEPTQQHFSVAQVFLN-NYDAENKLNDILLIQLSSPANLSASVATVQLPQ 114
Query: 287 KQYWQHDFAQ-AIATVAGWGYYTYTTAISN 315
+ GWG +
Sbjct: 115 Q---DQPVPHGTQCLAMGWGRVGAHDPPAQ 141
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 74.6 bits (184), Expect = 6e-15
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 228 VKLGAHYLSSQLNNAV-YPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPI 286
V LGAH + + V + FL DIALLKL T+ + P CLP
Sbjct: 72 VILGAHQEVNLEPHVQEIEVSRLFLEPTR------KDIALLKLSSPAVITDKVIPACLPS 125
Query: 287 KQYWQHDFAQ-AIATVAGWGY 306
+ A + GWG
Sbjct: 126 P---NYVVADRTECFITGWGE 143
Score = 34.5 bits (80), Expect = 0.091
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 474 KDPKLSTVLRKLKVKVWSQAEC---LDYDPEV-EKQICAGGEKGNVD 516
+ + +L++ ++ V C + V ++CAG G D
Sbjct: 145 QGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTD 191
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 74.1 bits (183), Expect = 6e-15
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 228 VKLGAHYLSSQLNNA--VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+KLG H + + + P K F + DI L++L R V ++ I P+ LP
Sbjct: 51 IKLGMHSKNIRNEDEQIRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHIAPVSLP 110
Query: 286 IKQYWQHDFAQAIATVAGWGYYTYTTAISN 315
+ + + GWG TT +
Sbjct: 111 SRSR----GVGSRCRIMGWG-KISTTTYPD 135
Score = 32.5 bits (75), Expect = 0.39
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 477 KLSTVLRKLKVKVWSQAECLDYDPEV---EKQICAGGEKGNVD 516
V + + C P V + +CAG KG D
Sbjct: 132 TYPDVPHCTNIFIVKHKWCEPLYPWVPADSRTLCAGILKGGRD 174
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease;
1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 73.8 bits (182), Expect = 9e-15
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 228 VKLGAHYLSSQLNNA---VYPVEKTFLHEKYDKAEIKS--DIALLKLGRKVQFTNFIQPI 282
V LG + S + F+H ++ + DIAL+KL R Q + +Q
Sbjct: 53 VVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLA 112
Query: 283 CLPIKQYWQHDFAQ-AIATVAGWGYYTYTTAISN 315
LP A ++GWG + +
Sbjct: 113 NLPPA---GDILPNEAPCYISGWGRLYTGGPLPD 143
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 76.2 bits (187), Expect = 2e-14
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 12/91 (13%)
Query: 227 EVKLGAHYLSSQLNNAV-YPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+V LGAH + + V + FL DIALLKL T+ + P CLP
Sbjct: 615 KVILGAHQEVNLEPHVQEIEVSRLFLEPTR------KDIALLKLSSPAVITDKVIPACLP 668
Query: 286 IKQYWQHDF-AQAIATVAGWGYYTYTTAISN 315
Y + + GWG T T +
Sbjct: 669 SPNY---VVADRTECFITGWG-ETQGTFGAG 695
Score = 40.8 bits (95), Expect = 0.002
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 12/92 (13%)
Query: 474 KDPKLSTVLRKLKVKVWSQAEC---LDYDPEV-EKQICAGGEKGNVDVKEDLRFEEVDSS 529
+ + +L++ ++ V C + V ++CAG G D + DS
Sbjct: 689 QGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTD------SCQGDSG 742
Query: 530 RRLTVCQFNDVHHSESFTTIWRNFCSQQTKPG 561
L VC D + + T W C++ KPG
Sbjct: 743 GPL-VCFEKDKYILQG-VTSWGLGCARPNKPG 772
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 72.2 bits (178), Expect = 3e-14
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 10/84 (11%)
Query: 227 EVKLGAHYLSSQLNNA-VYPVEKTFLHEKYDKAEIKS---DIALLKLGRKVQFTNFIQPI 282
V+LG H L S+ V ++ H Y+ + + DI L++L + ++P+
Sbjct: 48 SVRLGDHSLQSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPV 107
Query: 283 CLPIKQYWQHDFAQ-AIATVAGWG 305
L ++GWG
Sbjct: 108 QLA-----NLCPKVGQKCIISGWG 126
Score = 33.7 bits (78), Expect = 0.16
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 475 DPKLSTVLRKLKVKVWSQAECLD-YDPEV-EKQICAGGEKG 513
L +VK++SQ +C Y ++ E +CAG G
Sbjct: 132 QENFPNTLNCAEVKIYSQNKCERAYPGKITEGMVCAGSSNG 172
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A,
LUNG; chymotrypsin homology, hormone/growth factor
complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Length = 240
Score = 71.5 bits (176), Expect = 4e-14
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 13/84 (15%)
Query: 227 EVKLGAHYLSSQLNNAV---YPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPIC 283
E LG H + + + V + + SD+ L+KL R +F+ I
Sbjct: 51 EAWLGIHDVHGRGDEKCKQVLNVSQLVYGPEG------SDLVLMKLARPAVLDDFVSTID 104
Query: 284 LPIKQYWQHDFAQ-AIATVAGWGY 306
LP + +V GWGY
Sbjct: 105 LPNY---GSTIPEKTSCSVYGWGY 125
Score = 33.7 bits (78), Expect = 0.17
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 479 STVLRKLKVKVWSQAEC---LDYDPEV-EKQICAGGEKGNVD 516
+LR + + +C + E +ICAG EK
Sbjct: 132 DGLLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEKIGSG 173
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine
tetraphosphatase, monomer, PSI- 2, protein structure
initiative, nysgrc; 2.05A {Trypanosoma brucei}
Length = 262
Score = 71.6 bits (176), Expect = 7e-14
Identities = 27/139 (19%), Positives = 45/139 (32%), Gaps = 26/139 (18%)
Query: 62 GDIHGQYLDLLMLFDYGKYPPKSRYL-FLGDYVDRGSNSLETICLLLAYKIKYPGMFHLL 120
GDIHG L L + S L +GD V++G +S + LL +
Sbjct: 25 GDIHGCRAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPDSFGVVRLLKRLGAYS------V 78
Query: 121 RGNHECANINKVYGFYDECKRRYNVKLWKTFTEC--------------FNCMPVAAIVDE 166
GNH+ K+ + ++ +K + + +P +
Sbjct: 79 LGNHD----AKLLKLVKKLGKKECLKGRDAKSSLAPLAQSIPTDVETYLSQLPHIIRIPA 134
Query: 167 -KIFCCHGGLSPYLSSIDQ 184
+ H GL P Q
Sbjct: 135 HNVMVAHAGLHPQRPVDRQ 153
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 71.1 bits (175), Expect = 7e-14
Identities = 13/81 (16%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 228 VKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTN-FIQPICLPI 286
+ G+ Y +++ + K +Y ++++ A+++ ++ + + I LP
Sbjct: 53 IHYGSSYRTTK---GTSVMAKKIYIVRYHPLTMQNNYAVIETEMPIKLDDKTTKKIELPS 109
Query: 287 KQYWQHDFAQ-AIATVAGWGY 306
+D V+GWG
Sbjct: 110 L---LYDPEPDTSVLVSGWGS 127
Score = 39.1 bits (92), Expect = 0.003
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 7/49 (14%)
Query: 475 DPKLSTVLRKLKVKVWSQAEC------LDYDPEV-EKQICAGGEKGNVD 516
+ S L + V + C ++ D + + CAGGE
Sbjct: 132 SLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGVFCAGGEYDETY 180
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 70.3 bits (173), Expect = 1e-13
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 18/97 (18%)
Query: 227 EVKLGAHYLSSQLNNA-VYPVEKTFLHEKYDKAEIKS-----------DIALLKLGRKVQ 274
EV LG + L + +A V K+F H ++ + + D+ LL+L +
Sbjct: 48 EVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPAD 107
Query: 275 FTNFIQPICLPIKQYWQHDFAQ-AIATVAGWGYYTYT 310
T+ ++PI LP + + +GWG T T
Sbjct: 108 ITDVVKPIALP-----TKEPKPGSKCLASGWGSITPT 139
Score = 32.9 bits (76), Expect = 0.28
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 477 KLSTVLRKLKVKVWSQAECLD-YDPEV-EKQICAGGEKGNVD 516
+ L+ + + + C Y +V + +CAG G D
Sbjct: 142 QKPDDLQCVFITLLPNENCAKVYLQKVTDVMLCAGEMGGGKD 183
>2asu_B Hepatocyte growth factor-like protein; serine proteinase,
beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 69.9 bits (172), Expect = 2e-13
Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 13/84 (15%)
Query: 227 EVKLGAHYLSSQLNNA---VYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPIC 283
EV LG + + Q PV K S + LLKL R V + IC
Sbjct: 52 EVWLGTLFQNPQHGEPSLQRVPVAKMVCGPSG------SQLVLLKLERSVTLNQRVALIC 105
Query: 284 LPIKQYWQHDF-AQAIATVAGWGY 306
LP + + +AGWG
Sbjct: 106 LPPE---WYVVPPGTKCEIAGWGE 126
Score = 34.9 bits (81), Expect = 0.061
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 479 STVLRKLKVKVWSQAEC-LDYDPEV-EKQICAGGEKGNVD 516
TVL + V S EC + + V E ++C G V
Sbjct: 133 DTVLNVALLNVISNQECNIKHRGRVRESEMCTEGLLAPVG 172
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 69.9 bits (172), Expect = 2e-13
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 18/93 (19%)
Query: 227 EVKLGAHYLSSQLNNA-VYPVEKTFLHEKYDKAEIKS-----------DIALLKLGRKVQ 274
+ LG H L + V+ V +F H YD + +K+ D+ LL+L +
Sbjct: 48 VILLGRHSLFHPEDTGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAE 107
Query: 275 FTNFIQPICLPIKQYWQHDFAQ-AIATVAGWGY 306
T+ ++ + LP + A +GWG
Sbjct: 108 LTDAVKVMDLP-----TQEPALGTTCYASGWGS 135
Score = 33.3 bits (77), Expect = 0.21
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 475 DPKLSTVLRKLKVKVWSQAECLDYDPEV--EKQICAGGEKGNVD 516
+ L+ + + V S C P+ + +CAG G
Sbjct: 140 EFLTPKKLQCVDLHVISNDVCAQVHPQKVTKFMLCAGRWTGGKS 183
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 69.9 bits (172), Expect = 2e-13
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 18/93 (19%)
Query: 227 EVKLGAHYLSSQLNNA-VYPVEKTFLHEKYDKAEIKS-----------DIALLKLGRKVQ 274
+V LG + L A V ++F H Y + + D+ LL L
Sbjct: 46 QVLLGRNNLFKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPAD 105
Query: 275 FTNFIQPICLPIKQYWQHDFAQ-AIATVAGWGY 306
T ++ I LP + + +GWG
Sbjct: 106 ITGGVKVIDLP-----TKEPKVGSTCLASGWGS 133
Score = 33.7 bits (78), Expect = 0.15
Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 475 DPKLSTVLRKLKVKVWSQAECLDYDPEV--EKQICAGGEKGNVD 516
+ +S L+ + + + S +C++ + + +CAG +G D
Sbjct: 138 EMVVSHDLQCVNIHLLSNEKCIETYKDNVTDVMLCAGEMEGGKD 181
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 72.7 bits (178), Expect = 2e-13
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 15/96 (15%)
Query: 228 VKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKS---------DIALLKLGRKVQFTNF 278
V +G + +EK + +D K+ DIALLKL +KV+ +
Sbjct: 277 VNVGDPKSQWGKE---FLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTH 333
Query: 279 IQPICLPIKQYWQHDF---AQAIATVAGWGYYTYTT 311
+PICLP + +
Sbjct: 334 ARPICLPCTMEANLALRRPQGSTCRDHENELLNKQS 369
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 69.5 bits (171), Expect = 2e-13
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 16/91 (17%)
Query: 227 EVKLGAHYLSSQLNNA-VYPVEKTFLHEKYDKAEIKS-----------DIALLKLGRKVQ 274
++ LG H LS + A + V +FL ++D + +K D+ LL+L + +
Sbjct: 48 QIWLGRHNLSKDEDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPAR 107
Query: 275 FTNFIQPICLPIKQYWQHDFAQAIATVAGWG 305
T+ ++ + LP ++ + +GWG
Sbjct: 108 ITDAVKILDLPTQEP----KLGSTCYTSGWG 134
Score = 33.3 bits (77), Expect = 0.25
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 475 DPKLSTVLRKLKVKVWSQAECLDYDPEV--EKQICAGGEKGNVD 516
+ S L+ +++++ S +C PE E +CA +
Sbjct: 140 TNRGSGTLQCVELRLQSNEKCARAYPEKMTEFVLCATHRDDSGS 183
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 73.0 bits (178), Expect = 3e-13
Identities = 84/577 (14%), Positives = 177/577 (30%), Gaps = 188/577 (32%)
Query: 306 YYTYTTAISNAKNTLK-FPGMSLQI-LQWFVDSYH------SIHLENYATEAAISNANNT 357
+ T +S + ++ F L+I ++ + S+ Y + N+
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-NDN 123
Query: 358 LKFPGMSLQILQWFVDSYKLNSSLGAVAPTPKPQSGLFVYGV----KFLQWL-------- 405
F ++ LQ ++ KL +L + +P + + GV K W+
Sbjct: 124 QVFAKYNVSRLQPYL---KLRQALLEL----RPAKNVLIDGVLGSGK--TWVALDVCLSY 174
Query: 406 ----------YWFHPKLKSERTASVGRQTMFQQRSKIEHRTAKVEGQSLVTSRVFRLRSR 455
+W LK+ + +T+ + K+ ++ S +LR
Sbjct: 175 KVQCKMDFKIFWL--NLKNCNSP----ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 456 SGKTNLTRHRFTTIIVPGKDPKLS-TVLRKLKVKVWSQAECLD-YDPEVEKQICAGGEKG 513
S + L R ++ K + VL V + A+ + ++ K + K
Sbjct: 229 SIQAELRR------LLKSKPYENCLLVLL----NVQN-AKAWNAFNLSC-KILLTTRFKQ 276
Query: 514 NVDVKEDLRFEEVDSSRRLTVCQFNDVHHSESFTTIWRNFCSQQTKPGTKDTKEEDEFNI 573
D + ++ + HHS + T E +
Sbjct: 277 VTDF--------LSAATTTHISL---DHHSMTLT-----------------PDEVKSLLL 308
Query: 574 KYT-LKQDDLNRIKQGLSGKPLKV----EEIVDEENAGNNEEIVGHNKKALSEMDKKIKE 628
KY + DL R + L+ P ++ E I D +N + V +K + I+
Sbjct: 309 KYLDCRPQDLPR--EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK-----LTTIIES 361
Query: 629 NIEMLKNDLGKMKKTPEIIK--YRDM-IAKYLP--VKISN------------------ME 665
++ +L+ P + + + + P I +
Sbjct: 362 SLNVLE---------PAEYRKMFDRLSV---FPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 666 EL--KSLLNKEFDQFKMS--DL---------NQVPNHIMLL----AVAGLVP--FLVPCV 706
+L SL+ K+ + +S + N+ H ++ + P +
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 707 DVLLISGYTPTMELIQTTYSSLLLTTLGGIHLTSHFRAILHNQVNKEDIPTILYPCTFAW 766
D Y YS H+ H + I H + + + +++ F +
Sbjct: 470 D-----QY---------FYS----------HIGHHLKNIEHPE--RMTLFRMVF-LDFRF 502
Query: 767 ISLLAPSVGLVVNSTGLVLLLLADIQKNQARPSWYKS 803
+ N++G +L L ++ YK
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKF-------YKP 532
Score = 54.1 bits (129), Expect = 2e-07
Identities = 88/555 (15%), Positives = 161/555 (29%), Gaps = 154/555 (27%)
Query: 1 MSQVDSLNLDSIINRLIDIDARSGRNVNLHESEISALCR---------VSREIFLSEPM- 50
+ +V +N +++ + + ++ + L VSR +P
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL----QPYL 138
Query: 51 -----LLELGTPLKICGDIHG------QYLDLLMLFDYG---KYPPKSRYLFLGDYVDRG 96
LLEL + I G ++ L + Y K K +L L +
Sbjct: 139 KLRQALLELRPAKNVL--IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK-NCNSP 195
Query: 97 SNSLETICLLLAYKIKYPGMFHLLRGNHECANINKVYGFYDECKR-----RY-------- 143
LE + L Y+I R +H +++ E +R Y
Sbjct: 196 ETVLE-MLQKLLYQIDPN---WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 144 ---NVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIRRISRPTRVPEQ--G 198
N K W F +C + +++ + S+D T P++
Sbjct: 252 NVQNAKAWNAFN--LSCKILLTTRFKQVTDFLSAATTTHISLDHHS----MTLTPDEVKS 305
Query: 199 LLCDLLWSDPEKAAESQLTIVRQVRFHAEVKLGAHYLSSQLNNAVYPVEKTFLHEKYDKA 258
LL L P+ LT + + + A + L + H DK
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRR-----LSIIAESIRDGLATW-----DNWKHVNCDKL 355
Query: 259 E--IKSDIALLK--LGRKVQFTNF-IQPICLPIKQYWQHDFAQAIATVAGWGYYTYTTAI 313
I+S + +L+ RK F + P I ++ + W + +
Sbjct: 356 TTIIESSLNVLEPAEYRK-MFDRLSVFPPSAHIP-------TILLSLI--WFDVIKSDVM 405
Query: 314 SNAKNTLKFPGMSLQILQWFVD---SYHSIHLENYATEAAISNANNTLKFPGMSLQIL-Q 369
K SL + + + S SI+LE LK + L +
Sbjct: 406 VVVN---KLHKYSL-VEKQPKESTISIPSIYLE--------------LKVKLENEYALHR 447
Query: 370 WFVDSYKLNSSLGAVAPTPKPQSGLFVYGVKFLQWLYWF---HPKLKSERTASVGRQTMF 426
VD Y + + + P F Y H LK+ R T+F
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYF----------YSHIGHH--LKNIEHP--ERMTLF 493
Query: 427 QQ--------RSKIEHRTAKVEGQSLVTSRVFRLR-----------------------SR 455
+ KI H + + + + +L+
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 456 SGKTNLTRHRFTTII 470
+ NL ++T ++
Sbjct: 554 KIEENLICSKYTDLL 568
Score = 33.7 bits (76), Expect = 0.28
Identities = 101/695 (14%), Positives = 176/695 (25%), Gaps = 223/695 (32%)
Query: 149 KTFTECFNCMPVAAIVDEKIFCCHGGLSPYLSS--IDQIRRISRPTRVPEQGLLCDLLWS 206
F + F+C V D LS ID I I V L L S
Sbjct: 27 DAFVDNFDCKDVQ---DM--------PKSILSKEEIDHI--IMSKDAVSGTLRLFWTLLS 73
Query: 207 DPEKAAESQLTIVRQV-------RFHAEVK----LGAHYLS--SQLNNAVYPVEKTFL-- 251
E+ + + V ++ E + + Y+ +L N K +
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 252 HEKYDKAEIKSDIALLKLGRKVQF-----------TNFIQPICLPIKQYWQHDFAQAIAT 300
+ Y K ++ ALL+L R + T +CL K Q I
Sbjct: 134 LQPYLK--LRQ--ALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKV--QCKMDFKIF- 185
Query: 301 VAGW---GYYTYTTAISNAKNTLKFPGMSLQILQWF---VDSYHSIHLENYATEAAISNA 354
W + L QI + D +I L ++ +A +
Sbjct: 186 ---WLNLKNCNSPETVLEMLQKL-----LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 355 NNTLKFPGMSLQIL-----QWFVDSYKLNS-------------SLGAVAPTP----KPQS 392
+ + L +L +++ L+ L A T
Sbjct: 238 LKSKPYEN-CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 393 GLFVYGVK--FLQWLYWFHPKLKSE-------RTASVGRQTMFQQRSKIEHRTAKVEGQS 443
L VK L++L L E R + + + V
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE--SIRDGLATWDNWKHVNCDK 354
Query: 444 LVTSRVFRLRSRSGKTNLTRHRFTTI-IVPGKDPKLST-VLRKLKVKVWSQAECLDYDPE 501
L + + + R F + + P + T +L + W D
Sbjct: 355 L--TTIIESSLNVLEPAEYRKMFDRLSVFP-PSAHIPTILLSLI----WFDVI--KSDVM 405
Query: 502 VEKQICAGGEKGNVDVKE------DLRFEEVDSSRRLTVCQFNDVHHS--ESFTTIWRNF 553
V KE + E +H S + + I + F
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY-----ALHRSIVDHYN-IPKTF 459
Query: 554 CSQQTKPGTKD----------------TKEEDEFNIKYTLKQDDLNRIKQGLSGKPLKVE 597
S P D + F + + D ++Q K+
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL----DFRFLEQ-------KIR 508
Query: 598 EIVDEENAGNNEEIVGHNKKALSEMDKKIKENIEMLKNDLGKMKKTPEIIKYRDMIAKYL 657
+ G + N L ++K Y+ I
Sbjct: 509 ------HDSTAWNASGS------------------ILNTLQQLKF------YKPYICDND 538
Query: 658 PVKISNMEELKSLLNKEFDQFKMSDLNQVPNHIMLLAVAGLVPFLVPCVDVLLISGYTPT 717
P ++++ V ++ FL + L+ S YT
Sbjct: 539 P---------------KYERL----------------VNAILDFLPKIEENLICSKYT-- 565
Query: 718 MELIQTTYSSLLLTTLGGIHLTSHFRAILHNQVNK 752
+L++ L+ I + H QV +
Sbjct: 566 -DLLRIA----LMAEDEAIFEEA------HKQVQR 589
Score = 32.1 bits (72), Expect = 0.97
Identities = 31/214 (14%), Positives = 71/214 (33%), Gaps = 55/214 (25%)
Query: 636 DLGKMKKTPEIIKYRDMIAKYLPVKISNM------EELKSLL-NKEFDQFKMSDLNQVPN 688
+ G+ + +Y+D+++ + + N + KS+L +E D + +
Sbjct: 10 ETGEHQ-----YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID-----HIIMSKD 59
Query: 689 H---------IMLLAVAGLVP-FLVPCVDVLLISGYTPTMELIQTTYSSLLLTTLGGIHL 738
+L +V F V+ +L Y M I+T + T +
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKF----VEEVLRINYKFLMSPIKTEQRQPSMMT----RM 111
Query: 739 TSHFRAILHN--------QVNKEDIPTILYPCTFAWISLLAPSVGLVVNSTG------LV 784
R L+N V++ L + L P+ ++++ +
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLR----QALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 785 LLLLAD--IQKNQARPSWYKSLRLMTTSTAVVTM 816
L + +Q ++ +L+ + V+ M
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 69.2 bits (170), Expect = 3e-13
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 18/93 (19%)
Query: 227 EVKLGAHYLSSQLNNA-VYPVEKTFLHEKYDKAEIKS-----------DIALLKLGRKVQ 274
+V LG + + V K H ++ + + D+ LL+L +
Sbjct: 51 QVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPAD 110
Query: 275 FTNFIQPICLPIKQYWQHDF-AQAIATVAGWGY 306
T+ ++PI LP + + +GWG
Sbjct: 111 ITDVVKPITLP-----TEEPKLGSTCLASGWGS 138
Score = 34.9 bits (81), Expect = 0.079
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 477 KLSTVLRKLKVKVWSQAECLD-YDPEV-EKQICAGGEKGNVD 516
K L+ + +K+ +C ++ +V + +CAG G
Sbjct: 145 KYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSY 186
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen;
HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A
3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Length = 224
Score = 68.0 bits (167), Expect = 6e-13
Identities = 18/88 (20%), Positives = 25/88 (28%), Gaps = 9/88 (10%)
Query: 228 VKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLPIK 287
G L S + K + K D AL+KL + + P
Sbjct: 50 ATGGVVDLQSS-SAVKVRSTKVLQAPGFTKETYGKDWALIKLAQPINQ-----PTLKIAT 103
Query: 288 QYWQHDFAQAIATVAGWGYYTYTTAISN 315
+ Q TVAGWG +
Sbjct: 104 ---TTAYNQGTFTVAGWGANREGGSQQR 128
Score = 38.3 bits (90), Expect = 0.005
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 477 KLSTVLRKLKVKVWSQAECLDYDPEV---EKQICAGGEKGNVD 516
L K V S A C + + ICAG + D
Sbjct: 125 SQQRYLLKANVPFVSDAACRSSSSFILVANEMICAGYDTKQED 167
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 70.3 bits (172), Expect = 1e-12
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 10/86 (11%)
Query: 228 VKLGAHYLSSQLNN--AVYPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTN----FIQP 281
+ + V++ HE Y+ ++DIAL+++ + + P
Sbjct: 374 IWTTVVDWIHPDLKRIVIEYVDRIIFHENYNAGTYQNDIALIEMKKDGNKKDCELPRSIP 433
Query: 282 ICLPIKQYWQHDF-AQAIATVAGWGY 306
C+P + F V+GWG
Sbjct: 434 ACVPWS---PYLFQPNDTCIVSGWGR 456
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes,
fibrinogen binding, glycosylati hydrolase; 1.43A
{Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A*
Length = 234
Score = 66.8 bits (164), Expect = 2e-12
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 228 VKLGAHYLSSQLNNAV--YPVEKTFLHEKYDKAEIKSDIALLKLGRKVQFTNFIQPICLP 285
+KLG H + P EK K + + DI L+KL +V + I P+ LP
Sbjct: 49 MKLGVHSKKVLNEDEQTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVPLSLP 108
Query: 286 IKQYWQHDFAQAIATVAGWGY 306
++ + GWG
Sbjct: 109 S----SPPSVGSVCHIMGWGS 125
Score = 30.6 bits (70), Expect = 1.6
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 477 KLSTVLRKLKVKVWSQAEC-LDYDPEV--EKQICAGGEKGNVD 516
V + + A C Y + + +CAG +G D
Sbjct: 132 TYPDVPYCAYINLLDDAVCQAGYPELLTEYRTLCAGILEGGKD 174
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 66.9 bits (164), Expect = 2e-12
Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 17/97 (17%)
Query: 227 EVKLGAHYLSSQLNNA-VYPVEKTFLHEKYDKAEIKS-----------DIALLKLGRKVQ 274
++ LG H L N A V ++F H ++ + +++ D+ LL+L
Sbjct: 48 QLWLGRHNLFDDENTAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPAD 107
Query: 275 -FTNFIQPICLPIKQYWQHDFAQAIATVAGWGYYTYT 310
T+ ++ + LP + + +GWG
Sbjct: 108 TITDAVKVVELP----TEEPEVGSTCLASGWGSIEPE 140
Score = 35.3 bits (82), Expect = 0.062
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 475 DPKLSTVLRKLKVKVWSQAECLDYDPEV--EKQICAGGEKGNVD 516
+ L+ + +K+ EC + + +C G +G D
Sbjct: 141 NFSFPDDLQCVDLKILPNDECKKAHVQKVTDFMLCVGHLEGGKD 184
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 69.2 bits (169), Expect = 2e-12
Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 19/113 (16%)
Query: 228 VKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKS---------DIALLKLGRKVQFTNF 278
V +G +E H Y+ K D+AL+KL K+++
Sbjct: 272 VSVGGEKRD-------LEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQT 324
Query: 279 IQPICLPIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKFPGMSLQILQ 331
I+PICLP + A + + F + L
Sbjct: 325 IRPICLPCTE--GTTRALRLPPTTTCQ-QQKEELLPAQDIKALFVSEEEKKLT 374
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr
protein phosphatase, ppase, manganese, sulfate, viral
protein; 2.15A {Enterobacteria phage lambda} SCOP:
d.159.1.3
Length = 221
Score = 66.0 bits (161), Expect = 3e-12
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 60 ICGDIHGQYLDLLMLFDYGKYPPKSRYL-FLGDYVDRGSNSLETICLLLAYKIKYPGMFH 118
+ GD+HG Y +L+ D + K L +GD VDRG+ ++E + L+ F
Sbjct: 17 VVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITFPW------FR 70
Query: 119 LLRGNHE 125
+RGNHE
Sbjct: 71 AVRGNHE 77
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 67.0 bits (163), Expect = 2e-11
Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 19/96 (19%)
Query: 228 VKLGAHYLSSQLNNAVYPVEKTFLHEKYDKAEIKS---------DIALLKLGRKVQFTNF 278
V +G +E H Y+ K D+AL+KL K+++
Sbjct: 514 VSVGGEKRD-------LEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQT 566
Query: 279 IQPICLPIKQYWQHDFAQAIAT---VAGWGYYTYTT 311
I+PICLP + T
Sbjct: 567 IRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQD 602
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.8 bits (152), Expect = 4e-10
Identities = 83/533 (15%), Positives = 135/533 (25%), Gaps = 209/533 (39%)
Query: 172 HGGLSPYLS-------SIDQIR-----RISRPTRVPEQGLLCDLLWSDPEKAAESQLTIV 219
HG L L Q++ + PT + +D E ++L
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQEQFNKILPEPT---------EGFAADDEPTTPAELV-- 61
Query: 220 RQVRFHAEVKLGAHYLSSQ------------LNNAVYPVEKTFLHEKYD----KAEIKSD 263
+F LG Y+SS LN + E +L D A++ +
Sbjct: 62 --GKF-----LG--YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN-DIHALAAKLLQE 111
Query: 264 IALLKLGRKVQFTNFIQPICL---PIKQYWQHDFAQAI----ATVA----GWG------- 305
+ K N+I + P + +A+ A + G G
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE 171
Query: 306 -----YYTYTTA----ISNAKNTL-----------KFPGMSLQILQWFVDSYHSIHLENY 345
Y TY I + TL K L IL+W +++ + ++Y
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW-LENPSNTPDKDY 230
Query: 346 ATEAAISNANNTLKFPGMSL-QILQWFVDSYKLNSSLGAVAPTPKPQSGLFVYG------ 398
IS P + + Q+ + V + L + G + G +
Sbjct: 231 LLSIPIS-------CPLIGVIQLAHYVVTAKLLGFTPGELRSY---LKGATGHSQGLVTA 280
Query: 399 ----------------VKFLQWLYW-------------FHPK-LKSERTASVGRQT-MFQ 427
K + L++ P L+ + G + M
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 428 ----QRSKIEHRTAKVEGQ---------SLVTSR---------------VFRLRSRSGKT 459
+ +++ K SLV LR +
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS 400
Query: 460 NLTRHRFTTIIVPGKDPKLSTVLRKLKVKVWSQAECLDYDP-------EVEKQICAGGEK 512
L + R +P + KL R L V P I K
Sbjct: 401 GLDQSR-----IPFSERKLKFSNRFLPVAS----------PFHSHLLVPASDLINKDLVK 445
Query: 513 GNVDVK--------------EDLRFEEVDSSRRLTVCQFND-VHHSESFTTIW 550
NV DLR S R+ C V W
Sbjct: 446 NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK--------W 490
Score = 54.3 bits (130), Expect = 2e-07
Identities = 85/517 (16%), Positives = 138/517 (26%), Gaps = 206/517 (39%)
Query: 40 VSREIFLSEPMLLELGTPLKICGDIHGQYLDLLM-LFDYGKYPPKSRYLFLGDYVDRGSN 98
V I S L EL + Q L++L L + P K DY+
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK-------DYLLSIPI 236
Query: 99 SLETICL--LLAYKI------KYPG-MFHLLRGNHECANINKVY------------GFYD 137
S I + L Y + PG + L+G + + F+
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS--QGLVTAVAIAETDSWESFFV 294
Query: 138 ECKRRYNVKLWKTFTECFNCMPV----AAIVDEKIFCCHGGLSPYLSSIDQIRRISRPTR 193
++ V + C+ P +I+++ + G SP LS I +++
Sbjct: 295 SVRKAITVLFF-IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS----ISNLTQ--- 346
Query: 194 VPEQGLLCDLLWSDPEKAAESQL-TIVRQVRFHAEVKLGAH-YLSSQLNNA----V---Y 244
Q+ V + H + G +S L N V
Sbjct: 347 --------------------EQVQDYVNKTNSH--LPAGKQVEIS--LVNGAKNLVVSGP 382
Query: 245 PVE----KTFLHEKYDKAEIKSDIALLKL-GRKVQFTN-FIQPICLPIKQYWQHDFAQAI 298
P L + KA D + + RK++F+N F LP+
Sbjct: 383 PQSLYGLNLTLRKA--KAPSGLDQSRIPFSERKLKFSNRF-----LPV------------ 423
Query: 299 ATVAGWGYYTYTTAISNAKNTLKFPGMSLQILQWFVDSYHSIHLENYATEAAISN-ANNT 357
+ P +HS L A++ + N
Sbjct: 424 ------------AS----------P-------------FHSHLLVP-ASDLINKDLVKNN 447
Query: 358 LKFPGMSLQILQWFVDSYKLNSSLGAVAPTPKPQSGLFVYGVKFLQWLYWFHPKLKSERT 417
+ F +QI P VY
Sbjct: 448 VSFNAKDIQI------------------P---------VY-----------DT-----FD 464
Query: 418 ASVGRQTMFQQRSKIEHRTAKVEGQSLVTSRVFRLRSRSGKTNLTRHRFTTIIV--PGKD 475
S R I R ++ V T+ + T I+ PG
Sbjct: 465 GSDLR----VLSGSISERIV----DCIIRLPVKW-------ETTTQFKATHILDFGPGGA 509
Query: 476 PKLSTVLRKLK----VKVWSQAECLDYDPEVE---KQ 505
L + + K V+V A LD +P+ + KQ
Sbjct: 510 SGLGVLTHRNKDGTGVRV-IVAGTLDINPDDDYGFKQ 545
Score = 47.4 bits (112), Expect = 2e-05
Identities = 95/627 (15%), Positives = 179/627 (28%), Gaps = 221/627 (35%)
Query: 278 FIQPICLPIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKFPGMSLQILQWFVDSY 337
F + + P + + D A + G + Y +++ +F + L F + Y
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAELVG-KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY 95
Query: 338 ---HSIHLENYATEAAISNANNTLKFPGMSLQILQWFVDSYKLNSSLGAVAPTPKP-QSG 393
+ IH AA N + ++++ +Y + + + A P K S
Sbjct: 96 LEGNDIH-----ALAAKLLQENDTTLV-KTKELIK----NY-ITARIMAKRPFDKKSNSA 144
Query: 394 LF---------VYGVKF------------LQWLYW-FHPKLKS--ERTASVGRQTMFQQR 429
LF + + F L+ LY +H + + +A +
Sbjct: 145 LFRAVGEGNAQLVAI-FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET-----LSEL 198
Query: 430 SKIEHRTAKVEGQSLVTSRVFR-LRSRSGKTNLTRHRFTTIIVPGKDPKLSTVLRKLKVK 488
+ KV Q L + L + S P KD L ++ +
Sbjct: 199 IRTTLDAEKVFTQGL---NILEWLENPSNT-------------PDKD-YLLSIPISCPLI 241
Query: 489 VWSQ-------AECLDYDP-EVEKQICAGGEKGNVDVKEDL----RFEEVDSSRRLTVCQ 536
Q A+ L + P E+ + G + L E DS
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLK-----GATGHSQGLVTAVAIAETDSW------- 289
Query: 537 FNDVHHSESFTTI---------WRNFCSQQTKPGT-------KDTKEEDE------FNIK 574
ESF + + P T +D+ E +E +I
Sbjct: 290 -------ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 575 YTLKQDDLNRIKQGLSGKPLKVEEIVDEENA--GNNEEIV-----GHNK-------KALS 620
L+ + +V++ V++ N+ +++ G ++L
Sbjct: 343 -------------NLTQE--QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL- 386
Query: 621 EMDKKIKENIEMLKNDLGKMKKTPEI----IKYRDMIAK----YLPVKI----SNMEELK 668
L L K K + I + + K +LPV +
Sbjct: 387 ----------YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS 436
Query: 669 SLLNKEFD----QFKMSDLNQVPNHIMLLAVAGLVPFLVPCVDVLLISGY-TPTMELIQT 723
L+NK+ F D+ Q+P V Y T ++
Sbjct: 437 DLINKDLVKNNVSFNAKDI-QIP--------------------V-----YDTFDGSDLRV 470
Query: 724 TYSSLLLTTLGGIHLTSHFRAILHNQVNKEDIPTILYPCTFAWISLLAPS----VGLVVN 779
S+ I+ V E T + T I P +G++ +
Sbjct: 471 LSGSIS---------ERIVDCIIRLPVKWET--TTQFKAT--HILDFGPGGASGLGVLTH 517
Query: 780 S----TGLVLLLLADIQKNQARPSWYK 802
TG+ +++ + N +K
Sbjct: 518 RNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 33.5 bits (76), Expect = 0.39
Identities = 32/170 (18%), Positives = 56/170 (32%), Gaps = 60/170 (35%)
Query: 587 QGLS-----GKPL-----KVEEIVDE------ENAGNN-EEIVGHNKKALS-----EMDK 624
QG S G L +++ + + G + +IV +N L+ E K
Sbjct: 1624 QG-SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 625 KIKEN-IEML-KNDLGKMKKTPEIIKYRD-MIAKYLPVKISNMEELKSLLNK-EFDQ--- 677
+I+EN M+ + + KT +I K + Y K LL+ +F Q
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT------FRSEKGLLSATQFTQPAL 1736
Query: 678 FKMS-----DL----NQVPNHIM----------LLAVAGLVPF-----LV 703
M DL + L ++A ++ +V
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVV 1786
Score = 30.0 bits (67), Expect = 4.5
Identities = 48/289 (16%), Positives = 78/289 (26%), Gaps = 111/289 (38%)
Query: 323 PGMSLQILQ--------W------FVDSY-HSIHLENYATEAAISNAN---NTLKFPGMS 364
GM + + + W F D+Y SI I N T+ F G
Sbjct: 1629 QGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSI--------LDIVINNPVNLTIHFGGEK 1680
Query: 365 LQILQWFVDSYKLNSSLGAVAPTPKPQSGLFVYGVKFLQWLYWFHPK--LKSERTASVGR 422
+ ++ + + + T K +F + + K L
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEK----IFKEINEHSTSYTFRSEKGLLS--------- 1727
Query: 423 QTMFQQ--------------RSK-IEHRTAKVEGQSL-------VTSRVFRLRS--RSGK 458
T F Q +SK + A G SL + V + S
Sbjct: 1728 ATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE--- 1784
Query: 459 TNLTRHR--FTTIIVPGKDPKLSTV----LRKLKVKVWSQAECLDYDPE---------VE 503
+ +R + VP + S + +V E L Y E VE
Sbjct: 1785 --VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE 1842
Query: 504 --------KQICAGGEKGNVD------------------VKEDLRFEEV 526
+Q A G+ +D +++ L EEV
Sbjct: 1843 IVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture,
hydrolase; 2.72A {Shigella flexneri 2A}
Length = 280
Score = 59.4 bits (143), Expect = 1e-09
Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 11/126 (8%)
Query: 62 GDIHGQYLDLLMLFDYGKYPPKSRYL-FLGDYVDRGSNSLETICLLLAYKIKYPGMFHLL 120
GD+HG Y +L+ L ++ P L GD V RG SL+ + + + L+
Sbjct: 7 GDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSV----RLV 62
Query: 121 RGNHECANINKVYGFYDECKRR-----YNVKLWKTFTECFNCMPVAAIVD-EKIFCCHGG 174
GNH+ + G + P+ I + +K+ H G
Sbjct: 63 LGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAG 122
Query: 175 LSPYLS 180
++P
Sbjct: 123 ITPQWD 128
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_B 1hia_B
Length = 152
Score = 51.4 bits (124), Expect = 9e-08
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 14/69 (20%)
Query: 263 DIALLKLGRKVQFTNFIQPICLPIKQYWQHDFAQAIATVAGWGYYTYTTAISNAKNTLKF 322
D+ LL+L + T+ ++ + LP Q + +GWG +I + +F
Sbjct: 9 DLMLLRLQSPAKITDAVKVLELPT----QEPELGSTCEASGWG------SIEPGPDDFEF 58
Query: 323 PGMSLQILQ 331
P +Q
Sbjct: 59 P----DEIQ 63
Score = 34.8 bits (81), Expect = 0.042
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 468 TIIVPGKDPKLSTVLRKLKVKVWSQAECLD-YDPEV-EKQICAGGEKGNVD 516
+I D + ++ +++ + C D + +V E +CAG G D
Sbjct: 48 SIEPGPDDFEFPDEIQCVQLTLLQNTFCADAHPDKVTESMLCAGYLPGGKD 98
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural
genomics, MCSG, Zn binding, hydrolase; 1.95A
{Sphaerobacter thermophilus}
Length = 246
Score = 47.0 bits (111), Expect = 8e-06
Identities = 24/130 (18%), Positives = 40/130 (30%), Gaps = 23/130 (17%)
Query: 60 ICGDIHGQYLDLL-MLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFH 118
I D+H + L +L D G+ LGD V G E + L+
Sbjct: 8 IISDVHANLVALEAVLSDAGRV---DDIWSLGDIVGYGPRPRECVELVRVLAPN-----I 59
Query: 119 LLRGNHECANINKVYGFYDECKRRYNVKLWKTFT---------ECFNCMPVAAIVDEKIF 169
+ GNH+ A G + + +T + +P ++D
Sbjct: 60 SVIGNHDWA----CIGRLSLDEFNPVARFASYWTTMQLQAEHLQYLESLPN-RMIDGDWT 114
Query: 170 CCHGGLSPYL 179
HG +
Sbjct: 115 VVHGSPRHPI 124
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric
AP4A hydrolase, phosphodiesterase, binding, Mn2+
binding, hydrolase; 1.90A {Streptococcus pneumoniae}
PDB: 3qfn_A 3qfo_A*
Length = 270
Score = 43.1 bits (101), Expect = 2e-04
Identities = 21/128 (16%), Positives = 32/128 (25%), Gaps = 18/128 (14%)
Query: 60 ICGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGSNSLETICLLLAYKIKYPGMFHL 119
+ DIHG L + + Y LGD + G+ + LL I
Sbjct: 16 LLSDIHGNTTALEAVLADARQLGVDEYWLLGDILMPGTGRRRILDLLDQLPIT-----AR 70
Query: 120 LRGNHECANINKVYGFYDECKRRYNVKL-------------WKTFTECFNCMPVAAIVDE 166
+ GN E + + V D + L D
Sbjct: 71 VLGNWEDSLWHGVRKELDSTRPSQRYLLRQCQYVLEEISLEEIEVLHNQPLQIHRQFGDL 130
Query: 167 KIFCCHGG 174
+ H
Sbjct: 131 TVGISHHL 138
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP:
d.159.1.5 PDB: 2gju_A
Length = 252
Score = 41.7 bits (97), Expect = 5e-04
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 62 GDIHGQYLDL-LMLFDYGKYPPKS----RYLFLGDYVDRGSNSLETICLLLAYKIKYPGM 116
+I G L L + + +Y LG+ V E I ++ K
Sbjct: 8 ANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKKEN-- 65
Query: 117 FHLLRGNHECA 127
++RG ++
Sbjct: 66 VKIIRGKYDQI 76
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.7 bits (79), Expect = 0.069
Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 16/89 (17%)
Query: 563 KDTKEEDEFNIKYTLKQDDLNRIKQGLSGKPLKVEEIVDEENAGNNEEIVGHNKKALSEM 622
+E E +I+ K R +Q +++E+ D + +E KK L E
Sbjct: 78 DRLTQEPE-SIR---KW----REEQRK-----RLQEL-DAASKVMEQEWREKAKKDLEEW 123
Query: 623 DKKIKENIEMLKNDLGKMKKTPEIIKYRD 651
+++ E +E K + K + D
Sbjct: 124 NQRQSEQVEKNKINNRIADK--AFYQQPD 150
Score = 28.2 bits (62), Expect = 8.0
Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 29/98 (29%)
Query: 491 SQAECLDYDPEV-----EKQICAGGEKGNVDVKEDLRFEEVD--SSRRLTVCQFNDVHHS 543
+QA+ L +PE E+Q R +E+D S +
Sbjct: 75 AQADRLTQEPESIRKWREEQ--------------RKRLQELDAASKVMEQEWREKAKKDL 120
Query: 544 ESFTTIWRNFCSQQTKPGTKDTKEEDEFNIKYTLKQDD 581
E + + Q K + + F +Q D
Sbjct: 121 EEW---NQRQSEQVEKNKINNRIADKAF-----YQQPD 150
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation,
signal transduction, MASS spectrometry, transferase;
2.05A {Rattus norvegicus} SCOP: d.144.1.7
Length = 343
Score = 35.0 bits (81), Expect = 0.082
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 10/85 (11%)
Query: 154 CFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAE 213
C P+ + + + +G L+ +L R P V +
Sbjct: 119 CAVGKPMCLLFE---YMAYGDLNEFL-------RSMSPHTVCSLSHSDLSTRARVSSPGP 168
Query: 214 SQLTIVRQVRFHAEVKLGAHYLSSQ 238
L+ Q+ +V G YLS +
Sbjct: 169 PPLSCAEQLCIARQVAAGMAYLSER 193
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET;
nucleotide-binding, hirschsprung disease,
phosphorylation, disease mutation; HET: ACK; 2.00A {Homo
sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A*
2ivv_A*
Length = 314
Score = 34.5 bits (80), Expect = 0.13
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Query: 169 FCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEV 228
+ +G L +L R SR G S + E LT+ + F ++
Sbjct: 107 YAKYGSLRGFL-------RESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQI 159
Query: 229 KLGAHYLSSQ 238
G YL+
Sbjct: 160 SQGMQYLAEM 169
>1giq_A IOTA toxin component IA; enzymatic component; HET: NAD; 1.80A
{Clostridium perfringens} SCOP: d.166.1.1 d.166.1.1 PDB:
1gir_A* 3buz_A*
Length = 413
Score = 32.9 bits (74), Expect = 0.44
Identities = 17/118 (14%), Positives = 43/118 (36%), Gaps = 4/118 (3%)
Query: 564 DTKEEDEFNIKYTLKQDDLNRIKQGLSGKPLK-VEEIVDEENAGNNEEIVGHNKKALSEM 622
D ++ E I++ ++ + R+++ L + +E + +N
Sbjct: 8 DFLKDKENAIQW--EKKEAERVEKNLDTLEKEALELYKKDSEQISNYSQTRQYFYDYQIE 65
Query: 623 DKKIKENIEMLKNDLGKMKKTPEIIKYRDMIAKYLPVKISNMEELKSLLNKE-FDQFK 679
++ + L+N + K K I Y + E ++ ++ E F++ K
Sbjct: 66 SNPREKEYKNLRNAISKNKIDKPINVYYFESPEKFAFNKEIRTENQNEISLEKFNELK 123
>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_A 1hia_A
Length = 80
Score = 30.2 bits (69), Expect = 0.51
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 228 VKLGAHYLSSQLNNA-VYPVEKTFLHEKYD 256
V LG H L N A + V F H ++
Sbjct: 49 VWLGRHNLFENENTAQFFGVTADFPHPGFN 78
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor);
four-helix-bundle, chaperone; 2.20A {Saccharomyces
cerevisiae} SCOP: a.7.5.1
Length = 106
Score = 30.2 bits (68), Expect = 0.73
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 594 LKVEEIVDEENAGNNEEIVGHNKKALSEMDKKIKENIEMLKNDLGKMKKTPEIIKYRDMI 653
LK ++ VD + EE++ K+ L + +KI+E E L+ L + T ++ R I
Sbjct: 37 LKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFLKTYQGTEDVSDARSAI 96
Query: 654 AK 655
Sbjct: 97 TS 98
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.99
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 376 KLNSSLGAVAPTPKP 390
KL +SL A P
Sbjct: 24 KLQASLKLYADDSAP 38
Score = 28.8 bits (63), Expect = 4.0
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 25/50 (50%)
Query: 317 KNTLKFPGMSLQILQWFVDSYHSIHLENYATEAAISNANNTLKFPGMSLQ 366
K LK LQ S+ L YA ++A P ++++
Sbjct: 19 KQALK----KLQ---------ASLKL--YADDSA----------PALAIK 43
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase;
4.00A {Methanosarcina mazei}
Length = 621
Score = 31.3 bits (70), Expect = 1.4
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 603 ENAGNNEEIVGHNKKALSEMDKKIKENIEMLKNDLGKMKKTPEIIKYRDMIAKYLPVKIS 662
+ + I A+ E+ +K LK+ L K + + +I K LP +
Sbjct: 436 DAIADIPVIKEEIDLAIKEVARK-------LKHYLSKQSNLKKRREKEIIITKVLPKLAA 488
Query: 663 NMEELKSLLNKEFD 676
+ + + +
Sbjct: 489 KVAHVLEKDVPDIN 502
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase,
PSI, protein structure initiative, midwest center for
structural genomics, MCSG; 2.25A {Escherichia coli}
SCOP: d.159.1.7
Length = 208
Score = 30.5 bits (69), Expect = 1.7
Identities = 18/122 (14%), Positives = 33/122 (27%), Gaps = 29/122 (23%)
Query: 60 ICGDIHGQYLDLLMLFDYGKYPPKSRYLFLGDYVDRGS--------NSLETICLLLAYKI 111
DIHG + + + LGD ++ G + + L
Sbjct: 30 FASDIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVAH 89
Query: 112 KYPGMFHLLRGNHECANINKVYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCC 171
K +RGN + + F + L + +++F
Sbjct: 90 KVIA----VRGNCDSEVDQMLLHF--PITAPWQQVLLE---------------KQRLFLT 128
Query: 172 HG 173
HG
Sbjct: 129 HG 130
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase,
ATP-binding, microtubule INT and trafficking domain,
nucleotide-binding; HET: SRT; 2.40A {Sulfolobus
solfataricus} PDB: 2v6y_B*
Length = 83
Score = 28.5 bits (63), Expect = 2.0
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 15/79 (18%)
Query: 596 VEEIVDEENAGNNEEIVGHNKKALSEMDKKIKENIEMLKNDLGKMKKTPEIIKYRDMIAK 655
V + G E+ + + KKA IE+L + ++ Y MI +
Sbjct: 15 AILAVKADKEGKVEDAITYYKKA-----------IEVLSQIIVLYPESVARTAYEQMINE 63
Query: 656 YLPVKISNMEELKSLLNKE 674
Y + L+ +L
Sbjct: 64 YK----KRISYLEKVLPAS 78
>3tbi_B DNA-directed RNA polymerase subunit beta; transcription accessory
protein, transcription; 3.00A {Escherichia coli}
Length = 228
Score = 30.0 bits (68), Expect = 2.3
Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 12/80 (15%)
Query: 563 KDTKEEDEFNIKYTLKQDDLNRIKQGLSGKPLKVEEIVDEENAGNNEEIVGHNKKALSEM 622
+E I L+ +RI+ L ++ E++ +++ L
Sbjct: 127 AKKDLSEELQI---LEAGLFSRIRAVLVAGGVEAEKL---------DKLPRDRWLELGLT 174
Query: 623 DKKIKENIEMLKNDLGKMKK 642
D++ + +E L ++K
Sbjct: 175 DEEKQNQLEQLAEQYDELKH 194
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein,
decatenation, ATPase, drug design, DNA-binding,
magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus
shibatae}
Length = 530
Score = 30.2 bits (67), Expect = 3.1
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 603 ENAGNNEEIVGHNKKALSEMDKKIKENIEMLKNDLGKMKKTPEIIKYRDMIAKYLPVKIS 662
E+ E I K AL E+ +K LK L + +K E K KY+P
Sbjct: 428 ESIAEVENIEKEIKNALMEVARK-------LKQYLSEKRKEQEAKKKLLAYLKYIPEVSR 480
Query: 663 NMEELKSLLNKEFDQFKMSDLNQVPNHIM 691
++ + NKE +++++ ++
Sbjct: 481 SLATFLASGNKELVSKYQNEISEGLFKLI 509
>2qup_A BH1478 protein; structural genomics, unknown function, PSI-2,
protein struct initiative; 2.00A {Bacillus halodurans}
Length = 145
Score = 29.2 bits (65), Expect = 3.1
Identities = 10/85 (11%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Query: 586 KQGLSGKPLKVEEIVDEENAGNNEEIVGHNKKALSEMD-KKIKENIEMLKNDLGKMKKTP 644
+ G +G + + E++G + + + + I+ L + +
Sbjct: 5 RVGKAGLHRVDSKKQQTAAGVSFSEVMGKQRDEKAYERLQALMSKIDDQGKLLSETRTIE 64
Query: 645 EIIKYRDMIAKYLPVKISNMEELKS 669
E+ KY++++ +++ + L+
Sbjct: 65 ELRKYKELVKEFVGDAVELGLRLEE 89
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain,
transferase, transferase-transferase inhibito; HET: 07J;
2.80A {Homo sapiens}
Length = 382
Score = 29.6 bits (67), Expect = 4.4
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 15/70 (21%)
Query: 169 FCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEV 228
+ G L YL + RP + +P E QL+ V +V
Sbjct: 156 YASKGNLREYL-------QARRPPGLEY--------SYNPSHNPEEQLSSKDLVSCAYQV 200
Query: 229 KLGAHYLSSQ 238
G YL+S+
Sbjct: 201 ARGMEYLASK 210
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex,
nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis,
ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Length = 83
Score = 27.7 bits (61), Expect = 4.6
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 15/76 (19%)
Query: 596 VEEIVDEENAGNNEEIVGHNKKALSEMDKKIKENIEMLKNDLGKMKKTPEIIKYRDMIAK 655
V + GN EE + + KKA IE+L + + Y MI +
Sbjct: 23 AINAVKADKEGNAEEAITNYKKA-----------IEVLAQLVSLYRDGSTAAIYEQMINE 71
Query: 656 YLPVKISNMEELKSLL 671
Y +E LK L+
Sbjct: 72 YK----RRIEVLKELI 83
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting
of N- and C-lobes, transferase; HET: PTR ACP; 1.80A
{Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A*
2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A*
3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A*
3js2_A* 3ky2_A ...
Length = 334
Score = 29.2 bits (66), Expect = 5.3
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 15/70 (21%)
Query: 169 FCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEV 228
+ G L YL R RP + D + E Q+T V ++
Sbjct: 122 YASKGNLREYL-------RARRPPGMEY--------SYDINRVPEEQMTFKDLVSCTYQL 166
Query: 229 KLGAHYLSSQ 238
G YL+SQ
Sbjct: 167 ARGMEYLASQ 176
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis,
nucleotide-binding, inhibitor, phosphorylation receptor,
transferase, transmembrane; HET: 00J; 1.50A {Homo
sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A*
3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A*
2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A*
3cpc_A* ...
Length = 316
Score = 29.2 bits (66), Expect = 6.0
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 15/70 (21%)
Query: 169 FCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAESQLTIVRQVRFHAEV 228
FC G LS YL R R VP PE + LT+ + + +V
Sbjct: 113 FCKFGNLSTYL-------RSKRNEFVPY--------KVAPEDLYKDFLTLEHLICYSFQV 157
Query: 229 KLGAHYLSSQ 238
G +L+S+
Sbjct: 158 AKGMEFLASR 167
>3rio_A PTSGHI operon antiterminator; twisted beta sheet, four helix
bundle, transcriptional antitermination, transcription;
1.99A {Bacillus subtilis}
Length = 180
Score = 28.2 bits (63), Expect = 7.4
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 615 NKKALSEMDKKIKENIEMLKNDLGKMKKTPEIIKYRDMIAKYLPVKISNMEELKSLLN 672
N L K E + + K +G KK ++I+ + ++ ++ K LL+
Sbjct: 22 NNNVLIASHHKYSEVVLIGKG-IGFGKKQDDVIEDKGYDKMFILKDEKEQKQFKKLLD 78
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 29.1 bits (65), Expect = 7.5
Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 18/81 (22%)
Query: 608 NEEIVGHNKKALSEMDKKIKENIEMLKNDLGKMKKTPEIIKYRDMIAKYLPVKISNMEEL 667
N+EI K+A+ MD++ +ML+ L K I + +
Sbjct: 112 NDEI----KRAILTMDEQEDLPKDMLEQ-LLKFVPEKSDID-----------LLEEHKHE 155
Query: 668 KSLLNKEFDQFKMSDLNQVPN 688
+ K D+F + +++++ +
Sbjct: 156 LDRMAKA-DRF-LFEMSRINH 174
>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase,
neurotrophic tyrosine kinase, receptor-related NTRKR2;
2.90A {Homo sapiens}
Length = 289
Score = 28.7 bits (65), Expect = 8.0
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 18/85 (21%)
Query: 154 CFNCMPVAAIVDEKIFCCHGGLSPYLSSIDQIRRISRPTRVPEQGLLCDLLWSDPEKAAE 213
P++ I +C HG L +L + P D+ +D ++ +
Sbjct: 81 VTKDQPLSMIFS---YCSHGDLHEFL-------VMRSPHS--------DVGSTDDDRTVK 122
Query: 214 SQLTIVRQVRFHAEVKLGAHYLSSQ 238
S L V A++ G YLSS
Sbjct: 123 SALEPPDFVHLVAQIAAGMEYLSSH 147
>2wn4_A ADP-ribosyltransferase enzymatic component; CDTA, ACTIN-ADPRT,
binary toxin; 1.85A {Clostridium difficile} PDB: 2wn5_A
2wn7_A* 2wn8_A 2wn6_A*
Length = 463
Score = 28.8 bits (63), Expect = 9.2
Identities = 20/138 (14%), Positives = 50/138 (36%), Gaps = 4/138 (2%)
Query: 544 ESFTTIWRNFCSQQTKPGTKDTKEEDEFNIKYTLKQDDLNRIKQGLS-GKPLKVEEIVDE 602
+S++ N + +D ++ E ++ K+ + RI+Q L + +E +
Sbjct: 38 QSYSEKVCNTTYKAPIERPEDFLKDKEKAKEWERKEAE--RIEQKLERSEKEALESYKKD 95
Query: 603 ENAGNNEEIVGHNKKALSEMDKKIKENIEMLKNDLGKMKKTPEIIKYRDMIAKYLPVKIS 662
+ + ++ + L+N + K K + Y +
Sbjct: 96 SVEISKYSQTRNYFYDYQIEANSREKEYKELRNAISKNKIDKPMYVYYFESPEKFAFNKV 155
Query: 663 NMEELKSLLNKE-FDQFK 679
E ++ ++ E F++FK
Sbjct: 156 IRTENQNEISLEKFNEFK 173
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A
{Thermococcus SP}
Length = 526
Score = 28.7 bits (63), Expect = 9.7
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 8/100 (8%)
Query: 565 TKEEDEFNIKYTLKQDDLNRIK-------QGLSGKPLKVEEIVDEENAGNNEEIVGHNKK 617
K++D N+ K+ D +I L K + E+++ + NNE + + +
Sbjct: 391 MKDQDVKNLIDLYKKKDREKINATTKAMINSLQEKIDEAEQLLAKAKGMNNENAIEYAQG 450
Query: 618 ALSEMDKKIKENIEMLK-NDLGKMKKTPEIIKYRDMIAKY 656
A+ E I + + + +D K +M Y
Sbjct: 451 AIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGDY 490
>1r45_A Exoenzyme C3, mono-ADP-ribosyltransferase C3; binary toxin, C3
exoenzyme; 1.57A {Clostridium phage c-st} SCOP:
d.166.1.1 PDB: 1r4b_A
Length = 204
Score = 28.2 bits (62), Expect = 9.8
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 615 NKKALSEMDKKIKENIEMLKNDLGKMKKTPEIIKYRDMIAKYLPVKISN--MEELKSLLN 672
N+ + + I + ++++ KMK II +R YL + + + + ++
Sbjct: 53 NQGNENGLPADILQKVKLIDQSFSKMKMPQNIILFRGDDPAYLGPEFQDKILNKDGTINK 112
Query: 673 KEFDQFKMSDLNQV 686
F+Q K L +
Sbjct: 113 TVFEQVKAKFLKKD 126
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY
crystallography, regulation of RHOA GTPase, protein
complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 3kz1_A*
Length = 368
Score = 28.6 bits (64), Expect = 9.9
Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 16/99 (16%)
Query: 592 KPLKVEEIVDEENA----GNNEEIVGHNKKALSEMDKKIKEN--IEMLKNDLGKMKKTPE 645
+ +K E ++ E N E++ + M K +E I+ + + + P
Sbjct: 49 QRMKKENLMPREELARLFPNLPELIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPA 108
Query: 646 IIKYRDMIAKYLPVKISN----MEELKSLL--NKEFDQF 678
+ + + A++ S +E +K+ F F
Sbjct: 109 REELQQVAAQF----CSYQSIALELIKTKQRKESRFQLF 143
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.405
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,395,841
Number of extensions: 750732
Number of successful extensions: 1712
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1537
Number of HSP's successfully gapped: 238
Length of query: 826
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 724
Effective length of database: 3,853,851
Effective search space: 2790188124
Effective search space used: 2790188124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.1 bits)