RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17086
(82 letters)
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 89.7 bits (223), Expect = 8e-24
Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARM 78
KDSC GDSGGPL+ + + + +L GLVS+G CG G PGIYT++ Y WI +
Sbjct: 220 AKDSCGGDSGGPLLAERANQQ-FFLEGLVSFG-ATCGTEGWPGIYTKVGKYRDWIEGNI 276
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 242
Score = 88.5 bits (220), Expect = 1e-23
Identities = 27/60 (45%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
GKDSC GDSGG LV+ +++T + ++ G+VS+G+ CG G G+YT++ Y+PWI ++
Sbjct: 181 GKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 240
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 90.3 bits (224), Expect = 2e-23
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKH----YLIGLVSYGTPECGI-GSPGIYTRITAYLPWII 75
+DSC GDSGGPL ++ G+VS G CG PG+YT + Y+ WI
Sbjct: 310 LQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWIT 369
Query: 76 ARMA 79
MA
Sbjct: 370 DTMA 373
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 88.3 bits (219), Expect = 9e-23
Identities = 27/60 (45%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 79
GKDSC GDSGG LV+ +++T + ++ G+VS+G+ CG G G+YT++ Y+PWI ++
Sbjct: 342 GKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 401
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 84.2 bits (209), Expect = 4e-22
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 20 PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
+DSC GDSGGPL K+ L+G+VS+G C G PG+Y+R+ + WI +
Sbjct: 179 TDRDSCQGDSGGPLSVKDGSGI-FSLVGIVSWGI-GCASGYPGVYSRVGFHAGWITDTIT 236
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 83.4 bits (207), Expect = 8e-22
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 7/59 (11%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
G+ +C+GDSGGPLV IG+VS+G+P C +G P +YTR+++++ WI A +
Sbjct: 170 GEGACHGDSGGPLVANG------AQIGIVSFGSP-CALGEPDVYTRVSSFVSWINANLK 221
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen,
secreted, protease, hydrolase, polymorphism,
glycoprotein, gamma-carboxyglutamic acid; HET: BI7;
1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A*
2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D
2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B*
1lqd_B* 1nfu_A* 1nfw_A* ...
Length = 241
Score = 81.9 bits (203), Expect = 4e-21
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 79
+D+C GDSGGP V + DT +++ G+VS+G C G GIYT++TA+L WI M
Sbjct: 177 QEDACQGDSGGPHVTRFKDT--YFVTGIVSWGE-GCARKGKYGIYTKVTAFLKWIDRSMK 233
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 81.5 bits (202), Expect = 5e-21
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY 80
+D+C GDSGG ++ +T + G+VS+G C G YT++ Y+ WI M
Sbjct: 183 KQDACQGDSGGVFAVRDPNTDRWVATGIVSWGI-GCS-RGYGFYTKVLNYVDWIKKEMEE 240
Query: 81 E 81
E
Sbjct: 241 E 241
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 81.6 bits (202), Expect = 6e-21
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
GKD+C GDSGGP+V N + + YL+G VS+G +CG G+Y+ I WI
Sbjct: 190 GKDACAGDSGGPMVTLNRERGQWYLVGTVSWGD-DCGKKDRYGVYSYIHHNKDWIQRVTG 248
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 81.1 bits (201), Expect = 6e-21
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 20 PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM 78
+DSC GD+GGPLV L G+V+ G+ CG PGIYTR+ +Y WI + +
Sbjct: 174 NRRDSCKGDAGGPLVCGG------VLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL 227
Query: 79 A 79
A
Sbjct: 228 A 228
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 81.5 bits (202), Expect = 7e-21
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA 79
+ C GDSGGPLV L G++S+ + C P + T + Y+ WI
Sbjct: 174 DQAPCKGDSGGPLVCGK----GRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVTG 229
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 82.1 bits (203), Expect = 1e-20
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
+D+C GDSGG ++ +T + G+VS+G C G YT++ Y+ WI M
Sbjct: 272 KQDACQGDSGGVFAVRDPNTDRWVATGIVSWG-IGCS-RGYGFYTKVLNYVDWIKKEME 328
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 82.9 bits (205), Expect = 1e-20
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY 80
+D+C GDSGG ++ +T + G+VS+G C G YT++ Y+ WI M
Sbjct: 340 KQDACQGDSGGVFAVRDPNTDRWVATGIVSWG-IGCS-RGYGFYTKVLNYVDWIKKEMEE 397
Query: 81 E 81
E
Sbjct: 398 E 398
>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C*
1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C
1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C
2gmt_C* ...
Length = 97
Score = 77.2 bits (191), Expect = 1e-20
Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
G SC GDSGGPLV K N L+G+VS+G+ C +PG+Y R+TA + W+ +A
Sbjct: 39 GVSSCMGDSGGPLVCKKNGA--WTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 95
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 81.3 bits (201), Expect = 2e-20
Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 21 GKDSCNGDSGGPLV-WKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
G DSC GDSGG ND K Y GLVS+G P+C G+ G+YTR+ Y+ WI+ M
Sbjct: 269 GMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWG-PQC--GTYGLYTRVKNYVDWIMKTMQ 325
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen;
HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A
3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Length = 224
Score = 79.1 bits (196), Expect = 3e-20
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
+D+C GDSGGP+ K+N +G+VS+G C G G+YT ++ + I +
Sbjct: 165 QEDTCQGDSGGPMFRKDNADE-WVQVGIVSWGE-GCARKGKYGVYTEVSTFASAIASAAR 222
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 79.5 bits (197), Expect = 3e-20
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARM 78
G DSC GDSGGPL+ + N+ +L G+ S+G EC PG+Y R++ + WI + +
Sbjct: 179 GIDSCQGDSGGPLMCQENNR--WFLAGVTSFGY-ECALPNRPGVYARVSRFTEWIQSFL 234
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 79.2 bits (196), Expect = 3e-20
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY 80
G +GD+G P V ++ L+G+ +Y G+P ++T++ +Y+ WI +
Sbjct: 175 GVSLESGDAGDPTVQQD------TLVGVAAYFPK-RPEGAPEVFTKVGSYVSWIQDIIKK 227
Query: 81 E 81
+
Sbjct: 228 K 228
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
...
Length = 254
Score = 78.8 bits (195), Expect = 8e-20
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 79
KDSC GDSGGP T YL G+VS+G C +G G+YTR++ Y+ W+ M
Sbjct: 184 SKDSCKGDSGGPHATHYRGT--WYLTGIVSWGQ-GCATVGHFGVYTRVSQYIEWLQKLMR 240
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor;
mutagenically deglycosyalted human plasma kallikrein
protease domain; HET: BAM; 1.40A {Homo sapiens} PDB:
2anw_A*
Length = 241
Score = 78.4 bits (194), Expect = 8e-20
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 79
GKD+C GDSGGPLV K+N L+G+ S+G C PG+YT++ Y+ WI+ +
Sbjct: 180 GKDACKGDSGGPLVCKHNGM--WRLVGITSWGE-GCARREQPGVYTKVAEYMDWILEKTQ 236
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S
3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Length = 235
Score = 78.4 bits (194), Expect = 9e-20
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARM 78
G+DSC GDSGGP V + T +L G++S+G EC G GIYT+++ Y+ WI +
Sbjct: 177 GRDSCQGDSGGPHVTEVEGT--SFLTGIISWGE-ECAMKGKYGIYTKVSRYVNWIKEKT 232
>1aut_C Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2
PDB: 3f6u_H*
Length = 250
Score = 78.5 bits (194), Expect = 1e-19
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 4/60 (6%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
+D+C GDSGGP+V + T +L+GLVS+G CG+ + G+YT+++ YL WI +
Sbjct: 183 RQDACEGDSGGPMVASFHGT--WFLVGLVSWGE-GCGLLHNYGVYTKVSRYLDWIHGHIR 239
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 79.0 bits (195), Expect = 1e-19
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
D+C GDSGGPL+ K++ + ++G+ S+G C PG+YT +YL WI +++
Sbjct: 191 KIDTCQGDSGGPLMCKDSAENSYVVVGITSWGV-GCARAKRPGVYTSTWSYLNWIASKIG 249
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA
inhibitor complex, covalent inhibitor, alternative
splicing, blood coagulation; HET: INH; 1.60A {Homo
sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A*
1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A*
1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A*
2fda_A* ...
Length = 238
Score = 78.0 bits (193), Expect = 1e-19
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 79
GKD+C GDSGGPL K+N+ +L+G+ S+G C PG+YT + Y+ WI+ +
Sbjct: 180 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGE-GCAQRERPGVYTNVVEYVDWILEKTQ 236
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 78.5 bits (194), Expect = 1e-19
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
D+C GDSGGP V K+ + Y +G+VS+G C G G YT + WI +
Sbjct: 197 RGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE-GCDRDGKYGFYTHVFRLKKWIQKVID 255
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 79.9 bits (197), Expect = 1e-19
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
GKD+C GDSGGPL K+N+ +L+G+ S+G C PG+YT + Y+ WI+ +
Sbjct: 567 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGE-GCAQRERPGVYTNVVEYVDWILEKTQ 623
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 77.6 bits (192), Expect = 1e-19
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI 74
C GDSG PLV + G+ S+ C G P + + ++ WI
Sbjct: 165 QAGVCFGDSGSPLVCNG------LIHGIASFVRGGCASGLYPDAFAPVAQFVNWI 213
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 78.6 bits (194), Expect = 1e-19
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
D+C GDSGGP V K+ + Y +G+VS+G C G G YT + WI +
Sbjct: 227 RGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE-GCDRDGKYGFYTHVFRLKKWIQKVID 285
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 77.2 bits (191), Expect = 2e-19
Identities = 28/60 (46%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
GKDSC GDSGGPLV +L GLVS+G CG PG+YT + Y WI +
Sbjct: 168 GKDSCQGDSGGPLV------CGDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ 221
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 78.1 bits (193), Expect = 2e-19
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
DSC GDSGGPLV L G+VS+G C + PG+YTR++ +LPWI +
Sbjct: 213 KTDSCQGDSGGPLVCSLQGR--MTLTGIVSWGR-GCALKDKPGVYTRVSHFLPWIRSHTK 269
Query: 80 YE 81
E
Sbjct: 270 EE 271
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 77.2 bits (191), Expect = 2e-19
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI 74
C GDSGGPL+ + G+ S+ C P +TR+ Y+ WI
Sbjct: 168 KAGICFGDSGGPLICDG------IIQGIDSFVIWGCATRLFPDFFTRVALYVDWI 216
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic
resolution, hydrolase/hydrolase inhibitor complex; 1.20A
{Pontastacus leptodactylus} SCOP: b.47.1.2
Length = 237
Score = 77.3 bits (191), Expect = 2e-19
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARM 78
GKDSC GDSGGPL + + YL G+VS+G C G PG+YT ++ ++ WI A
Sbjct: 181 GKDSCQGDSGGPLAASDTGS--TYLAGIVSWGY-GCARPGYPGVYTEVSYHVDWIKANA 236
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 77.3 bits (191), Expect = 2e-19
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
GKD+C GDSGGPL+ L G+ S+G CG P + R+ +Y+ WI +A
Sbjct: 182 GKDTCVGDSGGPLMCDG------VLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTIA 235
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor
complex, serine proteinase, benzamidine phosphonate,
serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens}
PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A*
3p8g_A* 3p8f_A*
Length = 241
Score = 77.3 bits (191), Expect = 2e-19
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
G DSC GDSGGPL D R + G+VS+G C PG+YTR+ + WI
Sbjct: 183 GVDSCQGDSGGPLSSVEADGR-IFQAGVVSWGD-GCAQRNKPGVYTRLPLFRDWIKENTG 240
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 76.9 bits (190), Expect = 3e-19
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
D+C GDSGGPL + N YL G++S+G CG PG+YTR+ Y+ WI R+
Sbjct: 183 KSDACQGDSGGPLACEKNGV--AYLYGIISWGD-GCGRLHKPGVYTRVANYVDWINDRIR 239
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 77.4 bits (191), Expect = 4e-19
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
D+C GDSGGPL + N YL G++S+G CG PG+YTR+ Y+ WI R+
Sbjct: 218 KSDACQGDSGGPLACEKNGV--AYLYGIISWGD-GCGRLHKPGVYTRVANYVDWINDRIR 274
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 76.4 bits (189), Expect = 4e-19
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
CNGD G PLV + G+ S+ CG G P +TR+ + WI
Sbjct: 167 RGGICNGDGGTPLVCEG------LAHGVASFSLGPCGRG-PDFFTRVALFRDWI 213
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 76.4 bits (189), Expect = 4e-19
Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
KDSCNGDSGGPL+ YL GLVS+G CG G PG+YT + + WI +
Sbjct: 169 QKDSCNGDSGGPLICNG------YLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKTVQ 222
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 78.3 bits (193), Expect = 4e-19
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 20 PGKDSCNGDSGGPLVWKNNDTRKHY-LIGLVSYGTPECGI-GSPGIYTRITAYLPWIIAR 77
GKD+C GD G PL + Y +G+V++G CG PG+Y + + WI
Sbjct: 323 QGKDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGI-GCGDENVPGVYANVAHFRNWIDQE 381
Query: 78 MA 79
M
Sbjct: 382 MQ 383
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 76.9 bits (190), Expect = 4e-19
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
DSC GDSGGPLV L G+VS+G C + PG+YTR++ +LPWI +
Sbjct: 190 KTDSCQGDSGGPLVCSLQGR--MTLTGIVSWGR-GCALKDKPGVYTRVSHFLPWIRSHTK 246
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 76.4 bits (189), Expect = 4e-19
Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 74
G D+C GDSGGPLV L G+ S+G+ CG PG+YT+I Y WI
Sbjct: 172 GADTCQGDSGGPLVCDG------MLQGITSWGSDPCGKPEKPGVYTKICRYTTWI 220
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine
proteinases, trypsin-like serine protease, tumor marker,
hydrolase; 1.61A {Homo sapiens}
Length = 232
Score = 76.5 bits (189), Expect = 5e-19
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARM 78
D+C GDSGGPLV + YL G+VS+G EC PG+YTR+TA WI ++
Sbjct: 174 KTDACQGDSGGPLVSSDARDI-WYLAGIVSWGD-ECAKPNKPGVYTRVTALRDWITSKT 230
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 78.4 bits (193), Expect = 5e-19
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 12/72 (16%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CG---------IGSPGIYTRITAY 70
++C GDSGGPL+ +G++S+G + C + + +
Sbjct: 424 DPNTCRGDSGGPLIVHKRSR--FIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQV 481
Query: 71 LPWIIARMAYEV 82
LPW+ ++ E
Sbjct: 482 LPWLKEKLQDED 493
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 76.0 bits (188), Expect = 5e-19
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 79
GK +CNGDSGGPL + G+ S+G G P +TR+T +L WI +
Sbjct: 170 GKGTCNGDSGGPLNYNG------LTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQTG 223
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 76.5 bits (189), Expect = 5e-19
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 79
G DSC GD+GGPLV D + L G+ S+G C PG+Y R++ ++ WI M
Sbjct: 189 GTDSCQGDAGGPLVCFEKDK--YILQGVTSWGL-GCARPNKPGVYVRVSRFVTWIEGVMR 245
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 76.5 bits (189), Expect = 5e-19
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
GD+G P V L+G+ SY + P ++ R+ Y+ I ++
Sbjct: 178 ETYIGYGDAGDPAVQNG------TLVGVASYISS-MPSEFPSVFLRVGYYVLDIKDIIS 229
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 76.1 bits (188), Expect = 5e-19
Identities = 25/60 (41%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
GKD+C DSGGPL+ L G SYG CG G P IYT + + WI M
Sbjct: 181 GKDTCRDDSGGPLICDG------ILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMM 234
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 76.6 bits (189), Expect = 6e-19
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 79
GKD+C GDSGGPL YL G+VS+G CG PG+YT ++Y WI +++
Sbjct: 186 GKDACQGDSGGPLSCPVEGL--WYLTGIVSWGD-ACGARNRPGVYTLASSYASWIQSKVT 242
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine
proteinase, C-terminal peptidase; 2.35A {Bos taurus}
SCOP: b.47.1.2
Length = 251
Score = 76.5 bits (189), Expect = 6e-19
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGT-PECG-IGSPGIYTRITAYLPWIIARM 78
+CNGDSGGPL + + + G+VS+G+ C P ++TR++AY+ WI ++
Sbjct: 192 VISACNGDSGGPLNCQADGQ--WDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKL 249
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease;
1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 76.1 bits (188), Expect = 7e-19
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CG-IGSPGIYTRITAYLPWIIARM 78
+ CNGDSGGPL D + G+ S+ + C I P ++TR++A++ WI +
Sbjct: 179 TRSGCNGDSGGPLNCPAADGS-WQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETI 237
Query: 79 A 79
A
Sbjct: 238 A 238
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 76.1 bits (188), Expect = 7e-19
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
GK +C+GDSGGPLV L G+ S+G+ C + P +YT++ Y WI +
Sbjct: 181 GKSTCSGDSGGPLVCNG------VLQGITSWGSEPCALPERPSLYTKVVHYRKWIKDTIV 234
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 76.1 bits (188), Expect = 7e-19
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
G +C DSGGPL+ L G+ S+G CG P +YT++ + WI MA
Sbjct: 184 GSYTCEHDSGGPLICDG------ILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMA 237
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 75.7 bits (187), Expect = 8e-19
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
GKD+C GDSGGPL+ L G+ S G C +P IY ++ + WI M
Sbjct: 179 GKDTCAGDSGGPLICDG------VLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVMK 232
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 77.7 bits (191), Expect = 9e-19
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARM 78
D+C GDSGGPLV + + Y+ G+VS+G CG PG+YT++ Y WI +
Sbjct: 499 SIDACKGDSGGPLVCMDANNV-TYVWGVVSWGE-NCGKPEFPGVYTKVANYFDWISYHV 555
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A,
LUNG; chymotrypsin homology, hormone/growth factor
complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Length = 240
Score = 75.7 bits (187), Expect = 9e-19
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
G C GD GGPLV + + ++G++ G C I PGI+ R+ Y WI +
Sbjct: 171 GSGPCEGDYGGPLVCEQHKM--RMVLGVIVPGR-GCAIPNRPGIFVRVAYYAKWIHKIIL 227
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 75.7 bits (187), Expect = 9e-19
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGIGSPGIYTRITAYLPWI 74
GK C GDSGGP V + + LIG+VS+ + C G P ++R+T+Y+ WI
Sbjct: 172 GKSPCFGDSGGPFVLSDKNL----LIGVVSFVSGAGCESGKPVGFSRVTSYMDWI 222
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 75.2 bits (186), Expect = 9e-19
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
K + GDSGGPL+ N G+VSYG G+ P ++TR++++LPWI M
Sbjct: 173 RKAAFKGDSGGPLLCNN------VAHGIVSYGKS-SGV-PPEVFTRVSSFLPWIRTTMR 223
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 77.6 bits (191), Expect = 1e-18
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
D+C GDSGGP V K+ + Y +G+VS+G C G G YT + WI +
Sbjct: 362 RGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE-GCDRDGKYGFYTHVFRLKKWIQKVID 420
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 75.3 bits (186), Expect = 1e-18
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
C GDSGG L+ G+ S+G EC ++T++ + WI +
Sbjct: 181 SGSICLGDSGGALICDG------VFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETIE 234
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 75.7 bits (187), Expect = 1e-18
Identities = 30/60 (50%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 79
+DSC GDSGGPLV K N T G+VS+G C PGIYTR+T YL WI +
Sbjct: 186 QRDSCQGDSGGPLVCKVNGT--WLQAGVVSWGE-GCAQPNRPGIYTRVTYYLDWIHHYVP 242
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 75.3 bits (186), Expect = 1e-18
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGI-GSPGIYTRITAYLPWIIARM 78
SCNGDSGGPL + + + + G+VS+G+ C P ++TR++ Y+ WI + +
Sbjct: 180 IISSCNGDSGGPLNCQGANGQ-WQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVI 238
Query: 79 A 79
A
Sbjct: 239 A 239
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 74.9 bits (185), Expect = 1e-18
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
G+D+C+GDSGGPL+ + G+V+ G+ CG P +YT++ Y WI + +A
Sbjct: 172 GRDTCHGDSGGPLICNG------EMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSIIA 225
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease,
catalytic intermediate, atomic resolution,
hydrolase-hydrolase inhibitor complex; 0.94A {Sus
scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B*
1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A*
1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A*
1esa_A 1esb_A* 1est_A* ...
Length = 240
Score = 75.3 bits (186), Expect = 2e-18
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGI-GSPGIYTRITAYLPWIIARM 78
+ C GDSGGPL N + + G+ S+ + C + P ++TR++AY+ WI +
Sbjct: 180 VRSGCQGDSGGPLHCLVNGQ--YAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237
Query: 79 A 79
A
Sbjct: 238 A 238
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A
{Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A
1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 76.3 bits (188), Expect = 2e-18
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 21 GKDSCNGDSGGPLVWKNNDTR--KHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIAR 77
G D+C GDSGGP V +++ +R + L G+VS+GT C + PG+YT+++ + WI
Sbjct: 300 GIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGT-GCALAQKPGVYTKVSDFREWIFQA 358
Query: 78 MA 79
+
Sbjct: 359 IK 360
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate
conformations, alternative splicing, glycoprotein,
hydrolase, protease, secreted; HET: K7J; 1.00A {Homo
sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Length = 224
Score = 74.5 bits (184), Expect = 2e-18
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 11/62 (17%)
Query: 21 GKDSCNGDSGGPLV--WKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIAR 77
K++CNGDSGGPLV L GLVS+GT CG PG+YT++ + WI
Sbjct: 168 KKNACNGDSGGPLVCRG--------TLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDT 219
Query: 78 MA 79
M
Sbjct: 220 MK 221
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI,
protein-protein interaction, non-cognate binding, S1
pocket, primary specificity; 1.70A {Bos taurus} SCOP:
b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E
1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A
1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Length = 245
Score = 74.9 bits (185), Expect = 2e-18
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
G SC GDSGGPLV K N L+G+VS+G+ +PG+Y R+TA + W+ +A
Sbjct: 187 GVSSCMGDSGGPLVCKKNGA--WTLVGIVSWGS-STCSTSTPGVYARVTALVNWVQQTLA 243
>2asu_B Hepatocyte growth factor-like protein; serine proteinase,
beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 74.6 bits (184), Expect = 3e-18
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARM 78
+C GD GGPL +++ L G++ C P ++TR++ ++ WI M
Sbjct: 170 PVGACEGDYGGPLACFTHNS--WVLEGIIIPNR-VCARSRWPAVFTRVSVFVDWIHKVM 225
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease,
fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Length = 252
Score = 74.6 bits (184), Expect = 3e-18
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 20 PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARM 78
D+C GDSGGPLV N+ L+G++S+G CG PG+YT++T YL WI M
Sbjct: 194 NLHDACQGDSGGPLVCLNDGR--MTLVGIISWGL-GCGQKDVPGVYTKVTNYLDWIRDNM 250
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 74.6 bits (184), Expect = 3e-18
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIG-----SPGIYTRITAYLPWI 74
+CNGDSGGPL + T ++G+ S+ G+G P +YTR++AYL WI
Sbjct: 183 NTGACNGDSGGPLNCPDGGT---RVVGVTSWVVS-SGLGACLPDYPSVYTRVSAYLGWI 237
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 74.1 bits (183), Expect = 3e-18
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
G+DSC GDSGGP+V L GLVS+G C PG+YT + + WI +
Sbjct: 171 GRDSCQGDSGGPVVCNG------SLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETIQ 224
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 75.1 bits (185), Expect = 3e-18
Identities = 8/60 (13%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
+ + G + ++ + +L G++ G + T+++ Y W M
Sbjct: 221 SVAAMHWMDGSVVTREHRGS--WFLTGVLGSQ--PVGGQAHMVLVTKVSRYSLWFKQIMN 276
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes,
fibrinogen binding, glycosylati hydrolase; 1.43A
{Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A*
Length = 234
Score = 74.1 bits (183), Expect = 4e-18
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
GKD+C GDSGGPL+ G+VS+G CG PG+YT++ Y WI + +A
Sbjct: 172 GKDTCGGDSGGPLICNG------QFQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSIIA 225
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 74.7 bits (184), Expect = 6e-18
Identities = 8/59 (13%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARM 78
+ + G + ++ + +L G++ G + T+++ Y W M
Sbjct: 262 SVAAMHWMDGSVVTREHRGS--WFLTGVLGSQ--PVGGQAHMVLVTKVSRYSLWFKQIM 316
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 73.3 bits (181), Expect = 7e-18
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
GKD+C GDSGGPL+ G++S G C PGIYT++ Y WI + ++
Sbjct: 169 GKDTCKGDSGGPLICNG------QFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIIS 222
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC
MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB:
1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Length = 227
Score = 73.3 bits (181), Expect = 7e-18
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
K S GDSGGPLV G+VSYG G+ P T++++++ WI
Sbjct: 175 KKTSFKGDSGGPLVCNK------VAQGIVSYGRN-NGM-PPRACTKVSSFVHWI 220
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 75.1 bits (184), Expect = 8e-18
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 12/72 (16%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CG---------IGSPGIYTRITAY 70
++C GDSGGPL+ +G++S+G + C + + +
Sbjct: 666 DPNTCRGDSGGPLIVHKRSR--FIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQV 723
Query: 71 LPWIIARMAYEV 82
LPW+ ++ E
Sbjct: 724 LPWLKEKLQDED 735
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine
esterase, glycosylation, extracellular; HET: NAG; 1.75A
{Agkistrodon halys}
Length = 238
Score = 73.0 bits (180), Expect = 1e-17
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
GKD+C GDSGGPL+ G+ S+G C P YT++ +L WI +A
Sbjct: 176 GKDTCKGDSGGPLICNG------QFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENIIA 229
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase;
2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Length = 240
Score = 73.0 bits (180), Expect = 1e-17
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRIT-AYLPWIIARM 78
KDSC GD+GGPL+ K +VS G CG+ PGIYT +T Y WI + +
Sbjct: 182 QKDSCKGDAGGPLICKG------VFHAIVSGGHE-CGVATKPGIYTLLTKKYQTWIKSNL 234
Query: 79 A 79
Sbjct: 235 V 235
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 72.5 bits (179), Expect = 1e-17
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
+ + GDSGGPL+ G+VSYG P P I+TR++ Y+PWI
Sbjct: 174 LRAAFMGDSGGPLLCAG------VAHGIVSYGHP-DAK-PPAIFTRVSTYVPWI 219
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG;
2.40A {Bos taurus} SCOP: b.47.1.2
Length = 227
Score = 72.5 bits (179), Expect = 1e-17
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 10/55 (18%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI 74
K+S +GDSGGPLV G+VSYG G+ P +YTRI+++L WI
Sbjct: 174 RKNSFSGDSGGPLVCNG------VAQGIVSYG---RNDGTTPDVYTRISSFLSWI 219
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_B 1hia_B
Length = 152
Score = 71.0 bits (175), Expect = 1e-17
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
GKD+C GDSGGPL+ G+ S+G CG P IYT++ YL WI +
Sbjct: 96 GKDTCMGDSGGPLICNG------MWQGITSWGHTPCGSANKPSIYTKLIFYLDWIDDTIT 149
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 72.2 bits (178), Expect = 1e-17
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
GKDSC GDSGGP+V L G+VS+G C G+PG+Y ++ + W+ + MA
Sbjct: 168 GKDSCQGDSGGPVVCNG------ELQGVVSWGYG-CAEPGNPGVYAKVCIFNDWLTSTMA 220
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus}
PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A
1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A*
1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A
...
Length = 223
Score = 72.2 bits (178), Expect = 1e-17
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
GKDSC GDSGGP+V L G+VS+G+ C PG+YT++ Y+ WI +A
Sbjct: 169 GKDSCQGDSGGPVVCSG------KLQGIVSWGSG-CAQKNKPGVYTKVCNYVSWIKQTIA 221
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Length = 234
Score = 72.6 bits (179), Expect = 1e-17
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGI-GSPGIYTRIT-AYLPWI 74
G+DSCNGDSG PL+ + G+ S+G CG PG+Y ++ +L WI
Sbjct: 176 GRDSCNGDSGSPLLCEG------VFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWI 226
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 72.2 bits (178), Expect = 2e-17
Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 74
GKDSC GDSGGP+V +N LIG VS+G C G+Y + A +I
Sbjct: 172 GKDSCQGDSGGPIVDSSN-----TLIGAVSWGN-GCARPNYSGVYASVGALRSFI 220
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 72.2 bits (178), Expect = 2e-17
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA 79
K + GDSGGPL+ G+VSYG P ++TRI+ Y PWI +
Sbjct: 174 TKSAFKGDSGGPLLCAG------VAQGIVSYG---RSDAKPPAVFTRISHYRPWINQILQ 224
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 72.2 bits (178), Expect = 2e-17
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGI-GSPGIYTRITAYLPWIIARM 78
CNGDSGGPL + N + +Y+ G+ S+ + C P ++TR++AY+ W+ M
Sbjct: 179 ANSGCNGDSGGPLNCQVNGS--YYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGIM 236
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease,
zymogen; 2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 71.8 bits (177), Expect = 2e-17
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI 74
S DSGGPLV K G+VSYG GS P ++TR+ +++ WI
Sbjct: 176 KGASFEEDSGGPLVCKR------AAAGIVSYG---QTDGSAPQVFTRVLSFVSWI 221
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 71.8 bits (177), Expect = 3e-17
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
GKDSC GDSGGP+V L G+VS+G C PG+YT++ Y+ WI +A
Sbjct: 173 GKDSCQGDSGGPVVCNG------QLQGVVSWGDG-CAQKNKPGVYTKVYNYVKWIKNTIA 225
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 71.9 bits (176), Expect = 9e-17
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 19/76 (25%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-----------------PGI 63
+ C G+SGG + + + +GLVS+G +GS
Sbjct: 428 DESPCKGESGGAVFLERRFR--FFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDF 485
Query: 64 YTRITAYLPWIIARMA 79
+ + PW+ +
Sbjct: 486 HINLFRMQPWLRQHLG 501
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 67.8 bits (165), Expect = 3e-15
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
G DSC GDSGGPLV D L G+ S+G C PG+Y R++ ++ WI M
Sbjct: 733 GTDSCQGDSGGPLVCFEKDKY--ILQGVTSWGL-GCARPNKPGVYVRVSRFVTWIEGVMR 789
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 37.3 bits (86), Expect = 1e-04
Identities = 10/53 (18%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 23 DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITA-YLPWI 74
D+ +G+SG ++ + ++G+ + G G+ + TA ++ +I
Sbjct: 165 DTFSGNSGSAML-----DQNQQIVGVHNAGYSN---GTINGGPKATAAFVEFI 209
>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels,
thermophIle, kinetic stabilit thermostability, protein
folding; HET: 2AB; 1.44A {Thermobifida fusca}
Length = 186
Score = 36.8 bits (85), Expect = 2e-04
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 24 SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYL 71
+ GDSGGP + + G+ S GT +C G + I L
Sbjct: 135 AEGGDSGGPWLTGS------QAQGVTSGGTGDCRSGGITFFQPINPLL 176
>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces
griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E
5sga_E 2sfa_A
Length = 181
Score = 36.0 bits (83), Expect = 3e-04
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 24 SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYL 71
+ GDSGG L + +GL S G+ C G Y +T L
Sbjct: 132 AQPGDSGGSLFAGS------TALGLTSGGSGNCRTGGTTFYQPVTEAL 173
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second
tetrahedral inter tetrapeptide, beta barrels, alpha
helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus}
SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E
2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E
2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E
...
Length = 185
Score = 36.0 bits (83), Expect = 4e-04
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 27 GDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYL 71
GDSGGPL IGL S G+ C G + +T L
Sbjct: 139 GDSGGPLYSGT------RAIGLTSGGSGNCSSGGTTFFQPVTEAL 177
>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A
{Cellulomonas bogoriensis}
Length = 189
Score = 35.6 bits (82), Expect = 5e-04
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 24 SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYL 71
+ GDSGG L+ N G+ S G+ C G + + L
Sbjct: 132 AEPGDSGGSLLAGN------QAQGVTSGGSGNCRTGGTTFFQPVNPIL 173
>1hpg_A Glutamic acid specific protease; serine protease,
hydrolase-hydrolase inhibitor complex; 1.50A
{Streptomyces griseus} SCOP: b.47.1.1
Length = 187
Score = 35.2 bits (81), Expect = 7e-04
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 27 GDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYL 71
GDSGG + +G+ S + G I+ +T L
Sbjct: 141 GDSGGAHFAGS------VALGIHSGSSGCSGTAGSAIHQPVTEAL 179
>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability,
electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}
Length = 188
Score = 34.9 bits (80), Expect = 9e-04
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 24 SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYL 71
+ GDSGG + G+ S G+ C G Y + L
Sbjct: 138 AEPGDSGGSFISGT------QAQGVTSGGSGNCRTGGTTFYQEVNPML 179
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 32.4 bits (73), Expect = 0.008
Identities = 11/42 (26%), Positives = 12/42 (28%), Gaps = 2/42 (4%)
Query: 23 DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIY 64
+ G SGGP N SYG G Y
Sbjct: 163 NMTGGSSGGPWFLGNGTGG--AQNSTNSYGYTFLPNVMFGPY 202
>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT
catalysis, protein folding, protein stability, packing
DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes}
SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A*
1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A*
2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A
1gbl_A ...
Length = 198
Score = 28.8 bits (64), Expect = 0.12
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 27 GDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYT 65
GDSGG + G++S G + + GI
Sbjct: 141 GDSGGSWITSAG-----QAQGVMSGGNVQSNGNNCGIPA 174
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A
{Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Length = 268
Score = 27.7 bits (60), Expect = 0.35
Identities = 5/44 (11%), Positives = 10/44 (22%), Gaps = 4/44 (9%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIY 64
S G ++ ++G + G C
Sbjct: 185 SGGVTEPGSSGSPIYSPE----KRVLGQLHGGPSSCSATGTNRS 224
>3sze_A Serine protease ESPP; parallel beta-helix, hydrolase; 2.50A
{Escherichia coli O157}
Length = 968
Score = 26.5 bits (57), Expect = 1.1
Identities = 9/47 (19%), Positives = 16/47 (34%)
Query: 27 GDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPW 73
GD+G L +N +K + G V + Y++
Sbjct: 206 GDAGSALFVYDNQKKKWVVAGTVWGIYNYANGKNHAAYSKWNQTTID 252
>3h09_A IGA1 protease, immunoglobulin A1 protease; serine protease, beta
helix, hydrolase, M protease, secreted, transmembrane,
virulence; 1.75A {Haemophilus influenzae}
Length = 989
Score = 26.2 bits (56), Expect = 1.4
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 27 GDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIG 59
GDSG PL + + K +G +
Sbjct: 261 GDSGSPLFVYDREKGKWLFLGSYDFWAGYNKKS 293
>3syj_A Adhesion and penetration protein autotransporter; bacterial
aggregation and biofilm formation, SELF-associatin
autotransporter (SAAT); 2.20A {Haemophilus influenzae}
Length = 1011
Score = 24.7 bits (52), Expect = 4.6
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 26 NGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIG 59
GDSG P+ + + +K + G++ G P G
Sbjct: 215 KGDSGSPMFIYDAEKQKWLINGILREGNPFEGKE 248
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Length = 204
Score = 24.4 bits (53), Expect = 5.1
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 27 GDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIA 76
G+SG P++ NN+ L+G+ + T + IA
Sbjct: 155 GNSGSPVLNSNNE-----LVGIHFASDVKNDDNRNAYGVYFTPEIKKFIA 199
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.140 0.452
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,277,624
Number of extensions: 62005
Number of successful extensions: 322
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 108
Length of query: 82
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 31
Effective length of database: 5,277,822
Effective search space: 163612482
Effective search space used: 163612482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)