RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy17087
         (84 letters)



>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease.  Many of these
           are synthesised as inactive precursor zymogens that are
           cleaved during limited proteolysis to generate their
           active forms. A few, however, are active as single chain
           molecules, and others are inactive due to substitutions
           of the catalytic triad residues.
          Length = 229

 Score = 75.4 bits (186), Expect = 2e-18
 Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 5/55 (9%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 76
           GKD+C GDSGGPLV  +    +  L+G+VS+G+  C   G PG+YTR+++YL WI
Sbjct: 179 GKDACQGDSGGPLVCNDG---RWVLVGIVSWGSG-CARPGKPGVYTRVSSYLDWI 229


>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are
           synthesized as inactive precursor zymogens that are
           cleaved during limited proteolysis to generate their
           active forms. Alignment contains also inactive enzymes
           that have substitutions of the catalytic triad residues.
          Length = 232

 Score = 75.4 bits (186), Expect = 2e-18
 Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 4/55 (7%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWI 76
           GKD+C GDSGGPLV  +N      L+G+VS+G+  C     PG+YTR+++YL WI
Sbjct: 178 GKDACQGDSGGPLVCNDNGR--GVLVGIVSWGS-GCARPNYPGVYTRVSSYLDWI 229


>gnl|CDD|215708 pfam00089, Trypsin, Trypsin. 
          Length = 218

 Score = 66.7 bits (163), Expect = 3e-15
 Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 5/54 (9%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           GKD+C GDSGGPLV  +       LIG+VS+G        PG+YT +++YL WI
Sbjct: 170 GKDACQGDSGGPLVCSDG-----ELIGIVSWGYGCASGNYPGVYTPVSSYLDWI 218


>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 413

 Score = 65.3 bits (159), Expect = 3e-14
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 22  PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARM 80
           P KD+C GDSGGP+  K  + R     G+VS+G   CG    PG+YT ++ Y  WI A  
Sbjct: 221 PPKDACQGDSGGPIFHKGEEGRVQ--RGVVSWGDGGCGGTLIPGVYTNVSNYQDWIAAMT 278


>gnl|CDD|217716 pfam03761, DUF316, Domain of unknown function (DUF316).  This
           family of proteins with unknown function are from
           Caenorhabditis elegans. The protein has GO references
           indicating the protein is a positive regulator of growth
           rate and is also involved in nematode larval
           development.
          Length = 280

 Score = 27.4 bits (61), Expect = 0.72
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 26  SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPEC 58
            C GD GGPL+   N + K+ +IG  + G  E 
Sbjct: 226 LCKGDDGGPLI--KNVSGKNTVIGFGATGNMED 256


>gnl|CDD|217852 pfam04030, ALO, D-arabinono-1,4-lactone oxidase.  This domain is
           specific to D-arabinono-1,4-lactone oxidase EC:1.1.3.-,
           which is involved in the final step of the
           D-erythroascorbic acid biosynthesis pathway.
          Length = 258

 Score = 25.7 bits (57), Expect = 3.4
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 15/74 (20%)

Query: 17  KFLVFPGKDSCNGDSGGPLVWKNNDT--------RKHYLIGLVSYGTPECGIGSPGIYTR 68
           +F  FP  D         +VW+ N T        R       +  G  E  +    I+  
Sbjct: 38  RFWWFPYTDKA-------VVWRANKTDEPEQSRPRSSLYDEFLGNGVYEALLWLARIFPS 90

Query: 69  ITAYLPWIIARMAY 82
           +T ++   + ++ Y
Sbjct: 91  LTPWVERFVFKLQY 104


>gnl|CDD|216094 pfam00747, Viral_DNA_bp, ssDNA binding protein.  This protein is
          found in herpesviruses and is needed for replication.
          Length = 1111

 Score = 24.6 bits (54), Expect = 7.3
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 54 GTPECGIGSPGIYTRITAYLPWII 77
           TP  G G  G+  ++T++ P   
Sbjct: 65 KTPTTGYGGTGVLLKVTSFCPSAF 88


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.140    0.460 

Gapped
Lambda     K      H
   0.267   0.0738    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,296,191
Number of extensions: 328067
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 10
Length of query: 84
Length of database: 10,937,602
Length adjustment: 52
Effective length of query: 32
Effective length of database: 8,631,194
Effective search space: 276198208
Effective search space used: 276198208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)