BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17089
(419 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 248 bits (633), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 140/429 (32%), Positives = 233/429 (54%), Gaps = 28/429 (6%)
Query: 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF- 60
KPV+ +VGRPNVGKST+FNR+ R ++V + PG+TRDR Y F +IDTGG
Sbjct: 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGID 82
Query: 61 ---EPEVKKGIMHEMTKQTKQAXXXXXXXXXXVDGRQGLVEQDKLITNFLRKSGQPIVL- 116
EP + ++ +Q + A V+GR+G+ D+ + L ++ +P+VL
Sbjct: 83 IGDEP-----FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLA 137
Query: 117 VXXXXXXXXXXXXLDFYELGIGNPHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTN 176
V DFY LG G P+ IS +G G+ + L+ + + F N
Sbjct: 138 VNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAV------------AEHFKN 185
Query: 177 IHSIEY----IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKY 232
I +Y I+ ++G+PNVGKS+L+N++LGE RVI + GTTRD++ + F YN +++
Sbjct: 186 IPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEF 245
Query: 233 ILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYES 292
+++DTAG+R++ K +E EK+SV++ LK+I + VV ++LD ++ I QD IA + +E+
Sbjct: 246 VIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA 305
Query: 293 GRSLIVCVNKWDSXXXXXXXXXXXXXXXXX--XFLSFAMFNFISAIKLNNINSFMESINH 350
G+++++ VNKWD+ FL +A F+SA+ I++ M +I
Sbjct: 306 GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIK 365
Query: 351 VYDSSIIHLSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKNPPIIVIHGNRLKYI 410
++ + + T+ + ++ A+ +P R K+ YA Q PP V+ N + +
Sbjct: 366 ASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPELM 425
Query: 411 GNDYKRYLE 419
Y+R+LE
Sbjct: 426 HFSYERFLE 434
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 240 bits (612), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 143/429 (33%), Positives = 231/429 (53%), Gaps = 28/429 (6%)
Query: 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF- 60
KPV+ +VGRPNVGKST+FNR+ R ++V + PG+TRDR Y F +IDTGG
Sbjct: 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGID 62
Query: 61 ---EPEVKKGIMHEMTKQTKQAXXXXXXXXXXVDGRQGLVEQDKLITNFLRKSGQPIVL- 116
EP + ++ +Q + A V+GR+G+ D+ + L ++ +P+VL
Sbjct: 63 IGDEP-----FLAQIRQQAEIAXDEADVIIFXVNGREGVTAADEEVAKILYRTKKPVVLA 117
Query: 117 VXXXXXXXXXXXXLDFYELGIGNPHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTN 176
V DFY LG G P+ IS +G G+ + L+ + + F N
Sbjct: 118 VNKLDNTEXRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAV------------AEHFKN 165
Query: 177 IHSIEY----IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKY 232
I +Y I+ ++G+PNVGKS+L+N+ LGE RVI + GTTRD++ + F YN +++
Sbjct: 166 IPETKYNEEVIQFCLIGRPNVGKSSLVNAXLGEERVIVSNVAGTTRDAVDTSFTYNQQEF 225
Query: 233 ILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYES 292
+++DTAG R++ K +E EK+SV++ LK+I + VV ++LD ++ I QD IA + +E+
Sbjct: 226 VIVDTAGXRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA 285
Query: 293 GRSLIVCVNKWDSXXXXXXXXXXXXXXXXX--XFLSFAMFNFISAIKLNNINSFMESINH 350
G+++++ VNKWD+ FL +A F SA+ I++ +I
Sbjct: 286 GKAVVIVVNKWDAVDKDESTXKEFEENIRDHFQFLDYAPILFXSALTKKRIHTLXPAIIK 345
Query: 351 VYDSSIIHLSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKNPPIIVIHGNRLKYI 410
++ + + T+ + + A+ +P R K+ YA Q PP V+ N +
Sbjct: 346 ASENHSLRVQTNVLNDVIXDAVAXNPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPELX 405
Query: 411 GNDYKRYLE 419
Y+R+LE
Sbjct: 406 HFSYERFLE 414
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 184 bits (466), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 133/423 (31%), Positives = 206/423 (48%), Gaps = 20/423 (4%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+++VGRPNVGKSTLFN+L + A+V + G+TRD K+F ++DT G
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 63
Query: 65 KKGIMHEMTKQTKQAXXXXXXXXXXVDGRQGLVEQDKLITNFLRKSGQPIVLVXXXXX-- 122
+ I + + T VDG++G+ ++D+ + +FLRKS +LV
Sbjct: 64 QDIISQKXKEVTLNXIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123
Query: 123 -XXXXXXXLDFYELGIGNPHIISALYGNGIKNFLENILT-IELPYKKFFKKKEFTNIHSI 180
+ Y LG G P +SA + + LE I+ +E K E T+
Sbjct: 124 REFEREVKPELYSLGFGEPIPVSAEHNINLDTXLETIIKKLEEKGLDLESKPEITDA--- 180
Query: 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
IKVAIVG+PNVGKSTL N++L + R + PGTTRD + + +KY+ +DTAG+
Sbjct: 181 --IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGL 238
Query: 241 RRRNKTF-EVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVC 299
RR+++ +EK+S + + SI +A+VV+++LDA Q I+ QD A GR+ +V
Sbjct: 239 RRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRXAGLXERRGRASVVV 298
Query: 300 VNKWD--SXXXXXXXXXXXXXXXXXXFLSFAMFNFISAIKLNNINSFMESINHVYDSSII 357
NKWD F+ ++ F SA K NI+ +++ N Y S
Sbjct: 299 FNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRXIDAXNLAYASYTT 358
Query: 358 HLSTSRITRAL--ISAIKNHPPCRKKLIRPKLRYAHQGGKNPPIIVIHGNRLKYIGNDYK 415
+ +S I AL + A N P K+ + Q PP + N ++ + N K
Sbjct: 359 KVPSSAINSALQKVLAFTNLPRGL------KIFFGVQVDIKPPTFLFFVNSIEKVKNPQK 412
Query: 416 RYL 418
+L
Sbjct: 413 IFL 415
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+V+VGRPNVGKS+LFNRL R A+VA+ PG+TRD G + F+++DTGG
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGD 63
Query: 65 KKGIMHEMTKQTKQAXXXXXXXXXXVDGRQGLVEQDKLITNFLRKSGQPIVLVXXXXXXX 124
K ++ ++ +A VDGR L + D + +LR+ G+P++LV
Sbjct: 64 K--WEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDP 121
Query: 125 XXXXXLD-FYELGIGNPHIISALYGNGIKNFLENI 158
L Y LG G+P S+ + G++ LE I
Sbjct: 122 KHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAI 156
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 70/122 (57%), Gaps = 4/122 (3%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243
KV IVG+PNVGKS+L N LL + + D PG TRD + + E + +++L+DT G+
Sbjct: 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG 62
Query: 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKW 303
+K + I++ K +++ +A VV+ +D + ++ D +A ++ G+ +I+ K
Sbjct: 63 DKWEKKIQE----KVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKV 118
Query: 304 DS 305
D
Sbjct: 119 DD 120
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 76/122 (62%), Gaps = 4/122 (3%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+++ IVGKPNVGKSTL+N LL E+R I D PGTTRD I + ++DTAG+
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGV-- 301
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
R++T +++E+ + +TL+ I +A++V+ +LDA + +D I I + +V +NK
Sbjct: 302 RSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINK 359
Query: 303 WD 304
D
Sbjct: 360 VD 361
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 2/155 (1%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+V+VG+PNVGKSTL NRL N A+V + PG TRD E I F I+DT G E
Sbjct: 246 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSET 305
Query: 65 KKGIMHEMTKQTKQAXXXXXXXXXXVDGRQGLVEQDKLITNFLRKSGQPIVLVXXXXXXX 124
+ ++T Q +D L E+D+ I + K+ + +V++
Sbjct: 306 NDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI-KNKRYLVVINKVDVVE 364
Query: 125 XXXXXLDFYELGIGNPHI-ISALYGNGIKNFLENI 158
+LG + ISAL G G++ E+I
Sbjct: 365 KINEEEIKNKLGTDRHMVKISALKGEGLEKLEESI 399
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 73/124 (58%), Gaps = 9/124 (7%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+KVAIVG+PNVGKS+L+N+ +R I D PGTTRD ++S ++DTAGIR
Sbjct: 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIR- 283
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYES--GRSLIVCV 300
+T + +EK V ++ ++ A++V+L +DA + D IYE R LI+ +
Sbjct: 284 --ETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD----QEIYEQVKHRPLILVM 337
Query: 301 NKWD 304
NK D
Sbjct: 338 NKID 341
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+ +VGRPNVGKS+L N + S A+V + PG TRD + +G ++DT G E
Sbjct: 227 VAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIR-ET 285
Query: 65 KKGIMHEMTKQTKQAXXXXXXXXXXVDGRQGLVEQDKLITNFLRKSGQPIVLV 117
+ ++++QA +D G D+ I ++ +P++LV
Sbjct: 286 SDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILV 336
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
E + I GKPN GKSTL+N+LLG+ R I PGTTRD I+ F ++ + L DTAG+
Sbjct: 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGL 291
Query: 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLD 273
R + E IE + ++ + EA++++ LLD
Sbjct: 292 R---EAGEEIEHEGIRRSRMKMAEADLILYLLD 321
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKS-FIIIDTGGFEPEV 64
V+ G+PN GKSTL N L A+V++ PG TRD + E +I K+ F + DT G E
Sbjct: 237 VIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRD-YIEECFIHDKTMFRLTDTAGLR-EA 294
Query: 65 KKGIMHEMTKQTK 77
+ I HE ++++
Sbjct: 295 GEEIEHEGIRRSR 307
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 70/122 (57%), Gaps = 3/122 (2%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK-KYILIDTAGIRRR 243
VAIVGKPNVGKSTL+N+LLG I GTTR + + N+ + I +DT GI
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72
Query: 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINI-ANFIYESGRSLIVCVNK 302
K+ +V+ V +S+ EA+V++ ++DA + +D I NFI + +IV +NK
Sbjct: 73 KKS-DVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINK 131
Query: 303 WD 304
D
Sbjct: 132 ID 133
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFII-IDTGG-FEP 62
+ +VG+PNVGKSTL N L ++ ++++ G TR R G I ++ II +DT G +EP
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72
Query: 63 EVKKGIMHEMTKQTKQAXXXXXXXXXXVDGRQGLVEQDKLI-TNFLRKSGQPIVLV 117
+ + H M + KQ+ +D +G +D+ I NF++ +P+++V
Sbjct: 73 KKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVV 128
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 70/122 (57%), Gaps = 3/122 (2%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK-KYILIDTAGIRRR 243
VAIVGKPNVGKSTL+N+LLG I GTTR + + N+ + I +DT GI
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 71
Query: 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINI-ANFIYESGRSLIVCVNK 302
K+ +V+ V +S+ EA+V++ ++DA + +D I NFI + +IV +NK
Sbjct: 72 KKS-DVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINK 130
Query: 303 WD 304
D
Sbjct: 131 ID 132
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFII-IDTGG-FEP 62
+ +VG+PNVGKSTL N L ++ ++++ G TR R G I ++ II +DT G +EP
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 71
Query: 63 EVKKGIMHEMTKQTKQAXXXXXXXXXXVDGRQGLVEQDKLI-TNFLRKSGQPIVLV 117
+ + H M + KQ+ +D +G +D+ I NF++ +P+++V
Sbjct: 72 KKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVV 127
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
E +KV I G+PN GKS+L+N+L G I D GTTRD ++ + +IDTAG+
Sbjct: 6 EGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGL 65
Query: 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDA 274
R + + +E+ + + + I +A+ V+ ++D
Sbjct: 66 R---EASDEVERIGIERAWQEIEQADRVLFMVDG 96
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60
+V+ GRPN GKS+L N L A+V + G TRD +I IIDT G
Sbjct: 10 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGL 65
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+KV I G+PN GKS+L+N+L G I D GTTRD ++ + +IDTAG+R
Sbjct: 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR- 63
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDA 274
+ + +E+ + + + I +A+ V+ ++D
Sbjct: 64 --EASDEVERIGIERAWQEIEQADRVLFMVDG 93
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60
+V+ GRPN GKS+L N L A+V + G TRD +I IIDT G
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGL 62
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243
KV I G+PN GKS+L+N+L G I D GTTRD ++ + +IDTAG+R
Sbjct: 6 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGLR-- 63
Query: 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDA 274
+ + +E+ + + + I +A+ V+ +D
Sbjct: 64 -EASDEVERIGIERAWQEIEQADRVLFXVDG 93
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEP-- 62
+V+ GRPN GKS+L N L A+V + G TRD +I IIDT G
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGLREAS 66
Query: 63 -EVKKGIMHEMTKQTKQA 79
EV++ + ++ +QA
Sbjct: 67 DEVERIGIERAWQEIEQA 84
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
VAIVGKPNVGKSTL+N+LLG P TTR ++ + ++ + +DT G+ +
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL---H 66
Query: 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFI 289
K + + +F + +++ + N V+ ++D + + +D +A +
Sbjct: 67 KPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARAL 111
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 7/177 (3%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+ +VG+PNVGKSTL N L + A ++ P TR R G G++ + +DT G +
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 69
Query: 65 KKGIMHEMTKQTKQAXXXXXXXXXXVDGRQGLVEQDKLITNFLRK--SGQPIVLV--XXX 120
+ M ++ +A VD R +D+L+ L+ PI+LV
Sbjct: 70 -DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLD 128
Query: 121 XXXXXXXXXLDFYE-LGIGNPHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTN 176
++E L P ++SAL + ++L + +P FF +++
Sbjct: 129 AAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLAL-MPEGPFFYPEDYAK 184
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 70/123 (56%), Gaps = 10/123 (8%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR- 242
++A++G PNVGKST+ N+L GEN I + PG T + + FEYN +K+ ++D G+
Sbjct: 9 EIALIGNPNVGKSTIFNALTGENVYIG-NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 67
Query: 243 -RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVN 301
N E+I + +I + ++V+ ++DA +++ + + E G +L++ +N
Sbjct: 68 TANSIDEIIARDYIINE-----KPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALN 120
Query: 302 KWD 304
K D
Sbjct: 121 KMD 123
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG 59
+ L+G PNVGKST+FN LT + + N+PG+T ++ GE + F ++D G
Sbjct: 10 IALIGNPNVGKSTIFNALT-GENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 63
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
+AIVG+PNVGKSTL+N LLG+ IT TTR I + + I +DT G+
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67
Query: 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWD 304
K I + SI + +VI +++ + + D + N + E +I+ VNK D
Sbjct: 68 K--RAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVD 124
Query: 305 S 305
+
Sbjct: 125 N 125
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+ +VGRPNVGKSTL N+L + ++ + TR R G G I +DT G E
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67
Query: 65 KKGIMHEMTKQTKQAXXXXXXXXXXVDGRQGLVEQDKLITNFLRKSGQPIVLV 117
K+ I M K + V+G + D+++ N LR+ P++L
Sbjct: 68 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILA 119
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 70/123 (56%), Gaps = 10/123 (8%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR- 242
++A++G PNVGKST+ N+L GEN I + PG T + + FEYN +K+ ++D G+
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIG-NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 63
Query: 243 -RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVN 301
N E+I + +I + ++V+ ++DA +++ + + E G +L++ +N
Sbjct: 64 TANSIDEIIARDYIINE-----KPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALN 116
Query: 302 KWD 304
K D
Sbjct: 117 KMD 119
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG 59
+ L+G PNVGKST+FN LT + + N+PG+T ++ GE + F ++D G
Sbjct: 6 IALIGNPNVGKSTIFNALT-GENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 59
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
+AIVG+PNVGKSTL+N LLG+ IT TTR I + + I +DT G+
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70
Query: 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWD 304
K I + SI + +VI +++ + + D + N + E +I+ VNK D
Sbjct: 71 K--RAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVD 127
Query: 305 S 305
+
Sbjct: 128 N 128
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+ +VGRPNVGKSTL N+L + ++ + TR R G G I +DT G E
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70
Query: 65 KKGIMHEMTKQTKQAXXXXXXXXXXVDGRQGLVEQDKLITNFLRKSGQPIVLV 117
K+ I M K + V+G + D+++ N LR+ P++L
Sbjct: 71 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILA 122
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 70/123 (56%), Gaps = 10/123 (8%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR- 242
++A++G PNVGKST+ N+L GEN I + PG T + + FEYN +K+ ++D G+
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIG-NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 63
Query: 243 -RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVN 301
N E+I + +I + ++V+ ++DA +++ + + E G +L++ +N
Sbjct: 64 TANSIDEIIARDYIINE-----KPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALN 116
Query: 302 KWD 304
K D
Sbjct: 117 KMD 119
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG 59
+ L+G PNVGKST+FN LT + + N+PG+T ++ GE + F ++D G
Sbjct: 6 IALIGNPNVGKSTIFNALT-GENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 59
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 70/123 (56%), Gaps = 10/123 (8%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR- 242
++A++G PNVGKST+ N+L GEN I + PG T + + FEYN +K+ ++D G+
Sbjct: 6 EIALIGNPNVGKSTIFNALTGENVYIG-NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 64
Query: 243 -RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVN 301
N E+I + +I + ++V+ ++DA +++ + + E G +L++ +N
Sbjct: 65 TANSIDEIIARDYIINE-----KPDLVVNIVDATA--LERNLYLTLQLXEXGANLLLALN 117
Query: 302 KWD 304
K D
Sbjct: 118 KXD 120
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG 59
+ L+G PNVGKST+FN LT + + N+PG+T ++ GE + F ++D G
Sbjct: 7 IALIGNPNVGKSTIFNALT-GENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 60
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG 59
+L+G PN GK+TLFN LTN+ V N+PG+T ++ GE +G+ I D G
Sbjct: 5 LLIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEKKTGEFLLGEHLIEITDLPG 57
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 4/119 (3%)
Query: 187 IVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKT 246
++G PN GK+TL N+L N+ + + PG T + F + D G+
Sbjct: 6 LIGNPNCGKTTLFNALTNANQRVG-NWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVAN 64
Query: 247 FEVIEKFSVIKTLKSI-LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWD 304
E I + I I LE + +I ++DA + + + + ++E G+ ++V +N D
Sbjct: 65 AEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMD 121
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60
+ LVG PNVGK+T+FN LT R V N+PG+T ++ G +K F+++D G
Sbjct: 6 VALVGNPNVGKTTIFNALTGLRQH-VGNWPGVTVEKKEGIMEYREKEFLVVDLPGI 60
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
VA+VG PNVGK+T+ N+L G + + + PG T + + + EY K+++++D GI
Sbjct: 6 VALVGNPNVGKTTIFNALTGLRQHVG-NWPGVTVEKKEGIMEYREKEFLVVDLPGI 60
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSI-KSLFEYNNKKYILIDTAGIRRR 243
+ + G+ NVGKS+ +N+L+G+N I D GTT D + KS+ + L+DT G+
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV 96
Query: 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKW 303
+ + + V K + A+ IL+ D+ D + N E +V VNK
Sbjct: 97 GE----LGRLRVEKARRVFYRADCGILVTDSAPTPYEDD--VVNLFKEMEIPFVVVVNKI 150
Query: 304 D 304
D
Sbjct: 151 D 151
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHY 42
+V+ GR NVGKS+ N L ++V++Y G T D Y
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVY 74
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60
P +V+ G PNVGKSTL LT ++ +A+YP TR + G+ G + IIDT G
Sbjct: 168 PTVVIAGHPNVGKSTLLKALTTAKPE-IASYPFTTRGINVGQFEDGYFRYQIIDTPGL 224
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 20/137 (14%)
Query: 179 SIEYIKVAIVGKPNVGKSTLINSL-LGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDT 237
+E V I G PNVGKSTL+ +L + + +Y P TTR FE +Y +IDT
Sbjct: 164 DLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASY--PFTTRGINVGQFEDGYFRYQIIDT 221
Query: 238 AG-----IRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNIS---AQDINIANFI 289
G I RN+ IEK +++ L+ + N++I + D ++ + I++ +
Sbjct: 222 PGLLDRPISERNE----IEKQAIL-ALRYL--GNLIIYIFDPSEHCGFPLEEQIHLFEEV 274
Query: 290 YESGRSL--IVCVNKWD 304
+ + L +V +NK D
Sbjct: 275 HGEFKDLPFLVVINKID 291
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYG 43
+VG PNVGKSTLFN LT + +AL ANYP T D++ G
Sbjct: 6 IVGLPNVGKSTLFNALTRA-NALAANYPFATIDKNVG 41
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGEN 206
+ V IVG PNVGKSTL N+L N
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRAN 25
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYG 43
+VG PNVGKSTLFN LT + +AL ANYP T D++ G
Sbjct: 6 IVGLPNVGKSTLFNALTRA-NALAANYPFATIDKNVG 41
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGEN 206
+ V IVG PNVGKSTL N+L N
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRAN 25
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+KVA+ G PNVGK++L N+L G + + + PG T + + +F Y LID G
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVA-NWPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDA 274
+ + EK + LK +A++VIL+ D+
Sbjct: 65 LGYS-SIDEKIARDYLLKG--DADLVILVADS 93
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYG 43
+ L G PNVGK++LFN LT ++ VAN+PG+T ++ G
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEG 45
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTA--GIR 241
+VA VG+ NVGKS+L+N+L TPG TR SI F N KY +D G
Sbjct: 25 EVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTR-SIN--FYLVNSKYYFVDLPGYGYA 81
Query: 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVN 301
+ +K ++ K V K+ +V LL+D + D+ + ++ + +
Sbjct: 82 KVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLT 141
Query: 302 KWD 304
K D
Sbjct: 142 KMD 144
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 1 MKPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60
+K + VGR NVGKS+L N L N + A V+ PG TR ++ Y+ + +D G+
Sbjct: 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINF---YLVNSKYYFVDLPGY 78
Query: 61 E----PEVKKGIMHEMTKQTKQAXXXXXXXXXXVDGRQGLVEQDKLITNFLRKSGQPIVL 116
+ ++ + + + + VDGR + D ++ +++ P +
Sbjct: 79 GYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTI 138
Query: 117 V 117
V
Sbjct: 139 V 139
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG 59
L+G PN GK+TLFN+LT SR V N+ G+T +R G+ ++D G
Sbjct: 8 LIGNPNSGKTTLFNQLTGSRQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPG 59
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAG 239
+ + ++G PN GK+TL N L G + + + G T + + F + + L+D G
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVG-NWAGVTVERKEGQFSTTDHQVTLVDLPG 59
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG 59
L+G PN GK+TLFN+LT SR V N+ G+T +R G+ ++D G
Sbjct: 8 LIGNPNSGKTTLFNQLTGSRQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPG 59
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAG 239
+ + ++G PN GK+TL N L G + + + G T + + F + + L+D G
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVG-NWAGVTVERKEGQFSTTDHQVTLVDLPG 59
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+KVA+ G PNVGK++L N+L G + + + PG T + + +F Y LID G
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVA-NWPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDA 274
+ + EK + LK +A++VIL+ D+
Sbjct: 65 LGYS-SIDEKIARDYLLKG--DADLVILVADS 93
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYG 43
+ L G PNVGK++LFN LT ++ VAN+PG+T ++ G
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEG 45
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+KVA+ G PNVGK++L N+L G + + + PG T + + +F Y LID G
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVA-NWPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDA 274
+ + EK + LK +A++VIL+ D+
Sbjct: 65 LGYS-SIDEKIARDYLLKG--DADLVILVADS 93
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYG 43
+ L G PNVGK++LFN LT ++ VAN+PG+T ++ G
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEG 45
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And
Regulation Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And
Regulation Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And
Regulation Of Fe2+ Membrane Transport
Length = 270
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG 59
L+G PN GK+TLFN+LT SR V N+ G+T +R G+ ++D G
Sbjct: 8 LIGNPNSGKTTLFNQLTGSRQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPG 59
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAG 239
+ + ++G PN GK+TL N L G + + + G T + + F + + L+D G
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVG-NWAGVTVERKEGQFSTTDHQVTLVDLPG 59
>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
pdb|4DHE|B Chain B, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
Length = 223
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 1 MKPVLVLVGRPNVGKSTLFNRLTNS-RDALVANYPGLTRD-RHYGEGYIGKKSFIIIDTG 58
++P + GR N GKST N L N R A + PG T+ ++ G + ++D
Sbjct: 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLP 87
Query: 59 GFE----PEVKKGIMHEMTKQTKQAXXXXXXXXXXVDGRQGLVEQDKLITNFLRKSGQPI 114
G+ P K ++ Q +D R+ L E D+ + + +G+PI
Sbjct: 88 GYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPI 147
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 20/133 (15%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRV-ITYDTPGTTR-----------DSIKSLFEYNNKK 231
++A G+ N GKST IN L + R+ TPG T+ + + L +
Sbjct: 31 EIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYG 90
Query: 232 YILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYE 291
Y + A + S ++T + +IL++DA++ ++ D + +
Sbjct: 91 YAEVPGAAKAHWEQLLS-----SYLQTRPQLCG---MILMMDARRPLTELDRRMIEWFAP 142
Query: 292 SGRSLIVCVNKWD 304
+G+ + + K D
Sbjct: 143 TGKPIHSLLTKCD 155
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 12/155 (7%)
Query: 157 NILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTP-G 215
N L EL K FK+K + + IVG N GK++L NSL G + + DT
Sbjct: 154 NKLMKELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKV--DTKLF 211
Query: 216 TTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDA- 274
TT + NN+K +L+DT G R ++++ F V TL ++ +IL++D+
Sbjct: 212 TTMSPKRYAIPINNRKIMLVDTVGFIRGIPP-QIVDAFFV--TLSEAKYSDALILVIDST 268
Query: 275 -QQNISAQDIN----IANFIYESGRSLIVCVNKWD 304
+N+ + + I I SG+ ++V +NK D
Sbjct: 269 FSENLLIETLQSSFEILREIGVSGKPILVTLNKID 303
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
I+ I+G PNVGKSTLIN L +N T D PG T + K+ L+DT GI
Sbjct: 121 IRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGIT---TSQQWVKVGKELELLDTPGI 175
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG-----F 60
+++G PNVGKSTL NRL A + PG+T + + + +GK+ ++DT G F
Sbjct: 124 LIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK--VGKE-LELLDTPGILWPKF 180
Query: 61 EPEV 64
E E+
Sbjct: 181 EDEL 184
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Gdp
Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Gdp
Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Gmppnp
Binding State
Length = 267
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYG 43
L+G PN GK+TLFN+LT +R V N+ G+T +R G
Sbjct: 8 LIGNPNSGKTTLFNQLTGARQR-VGNWAGVTVERKEG 43
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 180 IEYIKVAIVGKPNVGKSTLINSLLG-ENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTA 238
++ + V ++G PN GK+TL N L G RV + G T + + +F + + L+D
Sbjct: 1 MQKLTVGLIGNPNSGKTTLFNQLTGARQRVGNW--AGVTVERKEGIFATTDHQVTLVDLP 58
Query: 239 G 239
G
Sbjct: 59 G 59
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 12/155 (7%)
Query: 157 NILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTP-G 215
N L EL K FK+K + + IVG N GK++L NSL G + + DT
Sbjct: 154 NKLMKELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKV--DTKLF 211
Query: 216 TTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDA- 274
TT + NN+K +L+DT R ++++ F V TL ++ +IL++D+
Sbjct: 212 TTMSPKRYAIPINNRKIMLVDTVSFIRGIPP-QIVDAFFV--TLSEAKYSDALILVIDST 268
Query: 275 -QQNISAQDIN----IANFIYESGRSLIVCVNKWD 304
+N+ + + I I SG+ ++V +NK D
Sbjct: 269 FSENLLIETLQSSFEILREIGVSGKPILVTLNKID 303
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 12/155 (7%)
Query: 157 NILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTP-G 215
N L EL K FK+K + + IVG N GK++L NSL G + + DT
Sbjct: 154 NKLMKELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKV--DTKLF 211
Query: 216 TTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDA- 274
TT + NN+K +L+DT R ++++ F V TL ++ +IL++D+
Sbjct: 212 TTMSPKRYAIPINNRKIMLVDTVPFIRGIPP-QIVDAFFV--TLSEAKYSDALILVIDST 268
Query: 275 -QQNISAQDIN----IANFIYESGRSLIVCVNKWD 304
+N+ + + I I SG+ ++V +NK D
Sbjct: 269 FSENLLIETLQSSFEILREIGVSGKPILVTLNKID 303
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRD 39
+VG PNVGKST FN LTNS+ A N+P T D
Sbjct: 27 IVGLPNVGKSTFFNVLTNSQ-ASAENFPFCTID 58
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 183 IKVAIVGKPNVGKSTLINSL 202
+K+ IVG PNVGKST N L
Sbjct: 23 LKIGIVGLPNVGKSTFFNVL 42
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 58/132 (43%), Gaps = 17/132 (12%)
Query: 179 SIEYIK----VAIVGKPNVGKSTLINSLL------GENRVITYDTPGTTRDSIKSLFEYN 228
+IEY + V +VG NVGKST IN + EN + T PGTT D I +
Sbjct: 153 AIEYYRGGKDVYVVGCTNVGKSTFINRXIKEFSDETENVITTSHFPGTTLDLIDIPLDEE 212
Query: 229 NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANF 288
+ Y DT GI ++ + K S +K + E + L+ +Q + +A F
Sbjct: 213 SSLY---DTPGIINHHQXAHYVGKQS-LKLITPTKEIKPXVFQLNEEQTLFFS--GLARF 266
Query: 289 IYES-GRSLIVC 299
Y S GR C
Sbjct: 267 DYVSGGRRAFTC 278
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a
Mutant Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a
Mutant Bound To Gmppnp
Length = 272
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 5/41 (12%)
Query: 5 LVLVGRPNVGKSTLFNRLT--NSRDALVANYPGLTRDRHYG 43
+ L+G PN GK++LFN +T N R V N+PG+T +R G
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR---VGNWPGVTVERKSG 43
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
++A++G PN GK++L N + G N+ + + PG T + KS NK + D GI
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVG-NWPGVTVER-KSGLVKKNKDLEIQDLPGI 59
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
Length = 272
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 5/41 (12%)
Query: 5 LVLVGRPNVGKSTLFNRLT--NSRDALVANYPGLTRDRHYG 43
+ L+G PN GK++LFN +T N R V N+PG+T +R G
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR---VGNWPGVTVERKSG 43
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
++A++G PN GK++L N + G N+ + + PG T + KS NK + D GI
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVG-NWPGVTVER-KSGLVKKNKDLEIQDLPGI 59
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S.
Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 5/41 (12%)
Query: 5 LVLVGRPNVGKSTLFNRLT--NSRDALVANYPGLTRDRHYG 43
+ L+G PN GK++LFN +T N R V N+PG+T +R G
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR---VGNWPGVTVERKSG 43
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
++A++G PN GK++L N + G N+ + + PG T + KS NK + D GI
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVG-NWPGVTVER-KSGLVKKNKDLEIQDLPGI 59
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 164 PYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKS 223
P K KK F + +V IVG PN GKST+IN L G+ PG T+
Sbjct: 86 PRKVLLKKLSFDRLA-----RVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGI--Q 138
Query: 224 LFEYNNKKYILIDTAGIRRRN 244
F N IL DT GI +N
Sbjct: 139 WFSLENGVKIL-DTPGILYKN 158
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHY 42
+++VG PN GKST+ N+L R + V PG+T+ +
Sbjct: 102 VLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQW 139
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s
Mutant Without Nucleotide
Length = 272
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 5/41 (12%)
Query: 5 LVLVGRPNVGKSTLFNRLT--NSRDALVANYPGLTRDRHYG 43
+ L+G PN GK++LFN +T N R V N+PG++ +R G
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR---VGNWPGVSVERKSG 43
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
++A++G PN GK++L N + G N+ + + PG + + KS NK + D GI
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVG-NWPGVSVER-KSGLVKKNKDLEIQDLPGI 59
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a
Mutant Bound To Gdp
Length = 272
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 5/41 (12%)
Query: 5 LVLVGRPNVGKSTLFNRLT--NSRDALVANYPGLTRDRHYG 43
+ L+G PN GK++LFN +T N R V N+PG+ +R G
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR---VGNWPGVAVERKSG 43
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
++A++G PN GK++L N + G N+ + + PG + KS NK + D GI
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVG-NWPGVAVER-KSGLVKKNKDLEIQDLPGI 59
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYG 43
+VG PNVGKSTLFN LT + ANYP T + + G
Sbjct: 7 IVGLPNVGKSTLFNALTKA-GIEAANYPFCTIEPNTG 42
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 15/19 (78%)
Query: 184 KVAIVGKPNVGKSTLINSL 202
K IVG PNVGKSTL N+L
Sbjct: 4 KCGIVGLPNVGKSTLFNAL 22
>pdb|1PUI|A Chain A, Structure Of Engb Gtpase
pdb|1PUI|B Chain B, Structure Of Engb Gtpase
Length = 210
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 10/127 (7%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVI-TYDTPGTTRDSIKSLFEYNNKKYILIDTAGIR 241
I+VA G+ N GKS+ +N+L + + T TPG T+ + +LFE + K L+D G
Sbjct: 27 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQ--LINLFEVADGKR-LVDLPGYG 83
Query: 242 RRNKTFEVIEKFSVIKTLKSILEANV----VILLLDAQQNISAQDINIANFIYESGRSLI 297
E+ K+ + L LE +++L+D + + D + + +S +++
Sbjct: 84 YAEVPEEMKRKWQ--RALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVL 141
Query: 298 VCVNKWD 304
V + K D
Sbjct: 142 VLLTKAD 148
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRD-ALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60
+ GR N GKS+ N LTN + A + PG T+ + E GK+ ++D G+
Sbjct: 29 VAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKR---LVDLPGY 82
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 12/120 (10%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
V I+G + GK+TL++++ ++V + G T+ N+KK +DT G
Sbjct: 11 VTIMGHVDHGKTTLLDAIR-HSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGH---- 65
Query: 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWD 304
E F+ ++ + + ++VIL++ A + Q + N + +IV +NK D
Sbjct: 66 ------EAFTTMRARGAQV-TDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMD 118
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a
Mutant Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a
Mutant Bound To Mgdp
Length = 272
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 5/41 (12%)
Query: 5 LVLVGRPNVGKSTLFNRLT--NSRDALVANYPGLTRDRHYG 43
+ L+G P GK++LFN +T N R V N+PG+T +R G
Sbjct: 6 IALIGNPASGKTSLFNLITGHNQR---VGNWPGVTVERKSG 43
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
++A++G P GK++L N + G N+ + + PG T + KS NK + D GI
Sbjct: 5 EIALIGNPASGKTSLFNLITGHNQRVG-NWPGVTVER-KSGLVKKNKDLEIQDLPGI 59
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 185 VAIVGKPNVGKSTLINSLLGE-----NRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAG 239
V +VG NVGKST IN ++ E N + T PGTT D I+ E Y DT G
Sbjct: 165 VYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLY---DTPG 221
Query: 240 I 240
I
Sbjct: 222 I 222
>pdb|1NI3|A Chain A, Structure Of The Schizosaccharomyces Pombe Ychf Gtpase
Length = 392
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 20/33 (60%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRD 39
+VG PNVGKST F +T S ANYP T D
Sbjct: 25 IVGXPNVGKSTFFRAITKSVLGNPANYPYATID 57
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 184 KVAIVGKPNVGKSTLINSLLG-ENRVITYDTPGTTRDSIKSL-FEYNNKKYILIDTAGI- 240
++A+ G+ NVGKS+ INSL+ +N T PG T+ +L F N + +D G
Sbjct: 25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQ----TLNFYIINDELHFVDVPGYG 80
Query: 241 ------RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGR 294
R +IE + + E V+ ++D + S D+ + F+ G
Sbjct: 81 FAKVSKSEREAWGRMIETYITTRE-----ELKAVVQIVDLRHAPSNDDVQMYEFLKYYGI 135
Query: 295 SLIVCVNKWD 304
+IV K D
Sbjct: 136 PVIVIATKAD 145
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 14/123 (11%)
Query: 3 PVLVLVGRPNVGKSTLFNRLTNSRD-ALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFE 61
P + L GR NVGKS+ N L N ++ A ++ PG T+ ++ YI +D G+
Sbjct: 24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNF---YIINDELHFVDVPGYG 80
Query: 62 -PEVKK------GIMHEMTKQTKQAXXXXXXXXXXVDGRQGLVEQDKLITNFLRKSGQPI 114
+V K G M E T++ VD R D + FL+ G P+
Sbjct: 81 FAKVSKSEREAWGRMIETYITTREE---LKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPV 137
Query: 115 VLV 117
+++
Sbjct: 138 IVI 140
>pdb|2DZW|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E244a) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZW|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E244a) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 34/105 (32%)
Query: 96 LVEQDKLITNFLRKSGQPIVLVXXXXXXXXXXXXLDFYELGIGNPHIISALYGNGIKNFL 155
L E ++ F R S PIVL + +Y NP +Y G++NFL
Sbjct: 65 LREAFWIVKEFRRHSSTPIVL-------------MTYY-----NP-----IYRAGVRNFL 101
Query: 156 --------ENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPN 192
+ IL ++LP F KEFT I E IK + PN
Sbjct: 102 AEAKASGVDGILVVDLP---VFHAKEFTEIAREEGIKTVFLAAPN 143
>pdb|2DZS|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E103a) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZS|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E103a) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 34/105 (32%)
Query: 96 LVEQDKLITNFLRKSGQPIVLVXXXXXXXXXXXXLDFYELGIGNPHIISALYGNGIKNFL 155
L E ++ F R S PIVL + +Y NP +Y G++NFL
Sbjct: 65 LREAFWIVKEFRRHSSTPIVL-------------MTYY-----NP-----IYRAGVRNFL 101
Query: 156 --------ENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPN 192
+ IL ++LP F KEFT I E IK + PN
Sbjct: 102 AAAKASGVDGILVVDLP---VFHAKEFTEIAREEGIKTVFLAAPN 143
>pdb|2DZV|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D146a) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZV|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D146a) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 34/105 (32%)
Query: 96 LVEQDKLITNFLRKSGQPIVLVXXXXXXXXXXXXLDFYELGIGNPHIISALYGNGIKNFL 155
L E ++ F R S PIVL + +Y NP +Y G++NFL
Sbjct: 65 LREAFWIVKEFRRHSSTPIVL-------------MTYY-----NP-----IYRAGVRNFL 101
Query: 156 --------ENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPN 192
+ IL ++LP F KEFT I E IK + PN
Sbjct: 102 AEAKASGVDGILVVDLP---VFHAKEFTEIAREEGIKTVFLAAPN 143
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 21/129 (16%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYD-TPGTTRDSIKSLFEYNNK-KYILIDTAGIR 241
K+ ++G VGK+T IN +L Y+ T G + L + N K+ + DTAG
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAG-- 70
Query: 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYE------SGRS 295
EK +V+K + I A+ IL D I+ Q N+A ++ E +
Sbjct: 71 --------QEKKAVLKDVYYI-GASGAILFFDVTSRITCQ--NLARWVKEFQAVVGNEAP 119
Query: 296 LIVCVNKWD 304
++VC NK D
Sbjct: 120 IVVCANKID 128
>pdb|1GEQ|A Chain A, Entropic Stabilization Of The Tryptophan Synthase
A-Subunit From A Hyperthermophile, Pyrococcus Furiosus:
X-Ray Analysis And Calorimetry
pdb|1GEQ|B Chain B, Entropic Stabilization Of The Tryptophan Synthase
A-Subunit From A Hyperthermophile, Pyrococcus Furiosus:
X-Ray Analysis And Calorimetry
pdb|1WDW|A Chain A, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|C Chain C, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|E Chain E, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|G Chain G, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|I Chain I, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|K Chain K, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
Length = 248
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 34/105 (32%)
Query: 96 LVEQDKLITNFLRKSGQPIVLVXXXXXXXXXXXXLDFYELGIGNPHIISALYGNGIKNFL 155
L E ++ F R S PIVL + +Y NP +Y G++NFL
Sbjct: 65 LREAFWIVKEFRRHSSTPIVL-------------MTYY-----NP-----IYRAGVRNFL 101
Query: 156 --------ENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPN 192
+ IL ++LP F KEFT I E IK + PN
Sbjct: 102 AEAKASGVDGILVVDLP---VFHAKEFTEIAREEGIKTVFLAAPN 143
>pdb|2DZP|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D17n) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZP|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D17n) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 34/105 (32%)
Query: 96 LVEQDKLITNFLRKSGQPIVLVXXXXXXXXXXXXLDFYELGIGNPHIISALYGNGIKNFL 155
L E ++ F R S PIVL + +Y NP +Y G++NFL
Sbjct: 65 LREAFWIVKEFRRHSSTPIVL-------------MTYY-----NP-----IYRAGVRNFL 101
Query: 156 --------ENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPN 192
+ IL ++LP F KEFT I E IK + PN
Sbjct: 102 AEAKASGVDGILVVDLP---VFHAKEFTEIAREEGIKTVFLAAPN 143
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGY 46
+VG+PNVGKST F+ T D +ANYP T + + G Y
Sbjct: 5 VVGKPNVGKSTFFSAATLV-DVEIANYPFTTIEANVGVTY 43
>pdb|2E09|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E74a) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2E09|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E74a) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 34/105 (32%)
Query: 96 LVEQDKLITNFLRKSGQPIVLVXXXXXXXXXXXXLDFYELGIGNPHIISALYGNGIKNFL 155
L E ++ F R S PIVL + +Y NP +Y G++NFL
Sbjct: 65 LREAFWIVKAFRRHSSTPIVL-------------MTYY-----NP-----IYRAGVRNFL 101
Query: 156 --------ENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPN 192
+ IL ++LP F KEFT I E IK + PN
Sbjct: 102 AEAKASGVDGILVVDLP---VFHAKEFTEIAREEGIKTVFLAAPN 143
>pdb|2DZT|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D110a) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZT|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D110a) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 42/105 (40%), Gaps = 34/105 (32%)
Query: 96 LVEQDKLITNFLRKSGQPIVLVXXXXXXXXXXXXLDFYELGIGNPHIISALYGNGIKNFL 155
L E ++ F R S PIVL + +Y NP +Y G++NFL
Sbjct: 65 LREAFWIVKEFRRHSSTPIVL-------------MTYY-----NP-----IYRAGVRNFL 101
Query: 156 EN--------ILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPN 192
IL ++LP F KEFT I E IK + PN
Sbjct: 102 AEAKASGVAGILVVDLP---VFHAKEFTEIAREEGIKTVFLAAPN 143
>pdb|2DZU|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D110n) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZU|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D110n) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 42/105 (40%), Gaps = 34/105 (32%)
Query: 96 LVEQDKLITNFLRKSGQPIVLVXXXXXXXXXXXXLDFYELGIGNPHIISALYGNGIKNFL 155
L E ++ F R S PIVL + +Y NP +Y G++NFL
Sbjct: 65 LREAFWIVKEFRRHSSTPIVL-------------MTYY-----NP-----IYRAGVRNFL 101
Query: 156 EN--------ILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPN 192
IL ++LP F KEFT I E IK + PN
Sbjct: 102 AEAKASGVNGILVVDLP---VFHAKEFTEIAREEGIKTVFLAAPN 143
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 185 VAIVGKPNVGKSTLINSLLGEN-RVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243
+ ++G VG+S + N+LL +N Y P TTR KS E + K+Y I T + R
Sbjct: 22 LVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKS--EEDGKEYHFISTEEMTRN 79
Query: 244 NKTFEVIE 251
E +E
Sbjct: 80 ISANEFLE 87
>pdb|2DZX|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E131- 132a) From A Hyperthermophile, Pyrococcus
Furiosus
pdb|2DZX|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E131- 132a) From A Hyperthermophile, Pyrococcus
Furiosus
Length = 248
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 34/105 (32%)
Query: 96 LVEQDKLITNFLRKSGQPIVLVXXXXXXXXXXXXLDFYELGIGNPHIISALYGNGIKNFL 155
L E ++ F R S PIVL + +Y NP +Y G++NFL
Sbjct: 65 LREAFWIVKEFRRHSSTPIVL-------------MTYY-----NP-----IYRAGVRNFL 101
Query: 156 --------ENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPN 192
+ IL ++LP F KEFT I IK + PN
Sbjct: 102 AEAKASGVDGILVVDLP---VFHAKEFTEIARAAGIKTVFLAAPN 143
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 185 VAIVGKPNVGKSTLINSLLG-ENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
V VG P+VGKSTL++ L G E+ Y+ TT ++ + Y K ++D GI
Sbjct: 75 VGFVGFPSVGKSTLLSKLTGTESEAAEYEF--TTLVTVPGVIRYKGAKIQMLDLPGI 129
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
+ + G PNVGKS+ +N ++ V TT++ F++ KY +IDT G+ R
Sbjct: 32 IILSGAPNVGKSSFMN-IVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDR- 89
Query: 245 KTFE---VIEKFSVIKTLKSILEANVVIL-LLDAQQNISAQDINIANFIYE-----SGRS 295
FE IE + T+ ++ N VIL ++D + N Y S +S
Sbjct: 90 -AFENRNTIE----MTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKS 144
Query: 296 LIVCVNKWD 304
+++ NK D
Sbjct: 145 IVIGFNKID 153
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60
K ++L G PNVGKS+ N + + + V +Y T++ + G + IIDT G
Sbjct: 29 KKTIILSGAPNVGKSSFMN-IVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGL 86
>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|B Chain B, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|C Chain C, Crystal Structure Of A Probable Gtp-binding Protein Engb
Length = 190
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTR 38
++ GR NVGKSTL RLT + PG+TR
Sbjct: 4 IIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTR 36
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 189 GKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAG 239
G+ NVGKSTLI L G+ +V PG TR I+ E+ N K +ID G
Sbjct: 8 GRSNVGKSTLIYRLTGK-KVRRGKRPGVTRKIIE--IEWKNHK--IIDXPG 53
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 167 KFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGEN--RVITYDTPG 215
+FF K + +++S+ V ++GK VGKS+ +NSL+GE RV + G
Sbjct: 24 EFFGKLKQKDMNSM---TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEG 71
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 167 KFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGEN--RVITYDTPG 215
+FF K + +++S+ V ++GK VGKS+ +NSL+GE RV + G
Sbjct: 24 EFFGKLKQKDMNSM---TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEG 71
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 167 KFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGEN--RVITYDTPG 215
+FF K + +++S+ V ++GK VGKS+ +NSL+GE RV + G
Sbjct: 24 EFFGKLKQKDMNSM---TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEG 71
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 167 KFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGEN--RVITYDTPG 215
+FF K + +++S+ V ++GK VGKS+ +NSL+GE RV + G
Sbjct: 23 EFFGKLKQKDMNSM---TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEG 70
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKY--ILIDTAG 239
K+AI+G +VGKS+L + V +YD T ++ L N ++Y L+DTAG
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDP--TIENTFTKLITVNGQEYHLQLVDTAG 63
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKY--ILIDTAG 239
K+AI+G +VGKS+L + V +YD T ++ L N ++Y L+DTAG
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDP--TIENTFTKLITVNGQEYHLQLVDTAG 63
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIID 56
P ++L G P VGK+TL L + N L R+ +GY + I+D
Sbjct: 5 PNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILD 58
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKY--ILIDTAG 239
K+AI+G +VGKS+L + V +YD T ++ L N ++Y L+DTAG
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDP--TIENTFTKLITVNGQEYHLQLVDTAG 58
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0
Angstroms Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIID 56
P ++L G P VGK+TL L + N L R+ +GY + I+D
Sbjct: 12 PNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILD 65
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTAG 239
K+ +VG P VGKS L L+ + V YD T DS + + + +L +DTAG
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDP--TIEDSYRKQVVIDGETCLLDILDTAG 60
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 225 FEYNNKKYILIDTAGIR-RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDI 283
FE N + ++D G+R R + FE + + I L S E + V L+ D Q N + +
Sbjct: 172 FEIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQV-LMEDRQTNRLTESL 230
Query: 284 NIANFIYE----SGRSLIVCVNKWD 304
NI I S S+I+ +NK D
Sbjct: 231 NIFETIVNNRVFSNVSIILFLNKTD 255
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTAG 239
K+ +VG P VGKS L L+ + V YD T DS + + + +L +DTAG
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDP--TIEDSYRKQVVIDGETCLLDILDTAG 60
>pdb|2RCN|A Chain A, Crystal Structure Of The Ribosomal Interacting Gtpase Yjeq
From The Enterobacterial Species Salmonella Typhimurium
Length = 358
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 188 VGKPNVGKSTLINSLLG-ENRVITYDTP-----GTTRDSIKSLFEYNNKKYILIDTAGIR 241
G+ VGKS+L+N+LLG +N ++T D G + L+ + + + ID+ G+R
Sbjct: 221 AGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDV-IDSPGVR 279
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 28/139 (20%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVIT---YDTPGTTRDSIKSL--------------F 225
I + ++ + GK+TL SLL + IT GTTR L F
Sbjct: 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSF 62
Query: 226 EYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINI 285
++ N K +IDT G + EV SV+ + ILL+ A+ + AQ +
Sbjct: 63 QWENTKVNIIDTPG--HMDFLAEVYRSLSVL---------DGAILLISAKDGVQAQTRIL 111
Query: 286 ANFIYESGRSLIVCVNKWD 304
+ + + G I +NK D
Sbjct: 112 FHALRKMGIPTIFFINKID 130
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 178 HSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--I 235
+ + + ++GK VGKS+ +NS++GE RV++ +P + + + + L I
Sbjct: 35 EDVNSLTILVMGKGGVGKSSTVNSIIGE-RVVSI-SPFQSEGPRPVMVSRSRAGFTLNII 92
Query: 236 DTAGIRR----RNKTFEVIEKFSVIKTLKSIL 263
DT G+ + +I+ F + KT+ +L
Sbjct: 93 DTPGLIEGGYINDMALNIIKSFLLDKTIDVLL 124
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGT--TRDSIKSLFEYNNKKYILIDTAGI 240
+++ +VGK GKS NS+LG +V T T+ K + + +++DT GI
Sbjct: 30 LRIVLVGKTGAGKSATGNSILG-RKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGI 88
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 26/113 (23%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIR 241
K+ ++G VGKS L++ + + + + KS+ NNK K + DTAG
Sbjct: 9 KIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQE 68
Query: 242 R----------------------RNKTFEVIEKFSVIKTLKSILEANVVILLL 272
R + +FE IEK+ +K L+ ++N+VILL+
Sbjct: 69 RYRAITSAYYRGAVGALLVYDITKKNSFENIEKW--LKELRDNADSNIVILLV 119
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 184 KVAIVGKPNVGKSTLINSLLGE 205
++A++G GKSTLIN L GE
Sbjct: 701 RIAVIGPNGAGKSTLINVLTGE 722
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 184 KVAIVGKPNVGKSTLINSLLGE 205
++A++G GKSTLIN L GE
Sbjct: 701 RIAVIGPNGAGKSTLINVLTGE 722
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 184 KVAIVGKPNVGKSTLINSLLGE 205
++A++G GKSTLIN L GE
Sbjct: 695 RIAVIGPNGAGKSTLINVLTGE 716
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVI-----TYDTPGTTRDSIKSLFEYNNKKYILI 235
+A++G+ GKSTL++ LLG +R I Y + G S F Y+ +L+
Sbjct: 34 LAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLM 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,933,288
Number of Sequences: 62578
Number of extensions: 409470
Number of successful extensions: 1614
Number of sequences better than 100.0: 128
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 1440
Number of HSP's gapped (non-prelim): 194
length of query: 419
length of database: 14,973,337
effective HSP length: 101
effective length of query: 318
effective length of database: 8,652,959
effective search space: 2751640962
effective search space used: 2751640962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)