Query psy17089
Match_columns 419
No_of_seqs 345 out of 3490
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 21:34:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1160 Predicted GTPases [Gen 100.0 5.4E-89 1.2E-93 635.4 44.5 413 1-419 1-417 (444)
2 TIGR03594 GTPase_EngA ribosome 100.0 4.5E-72 9.8E-77 552.3 52.0 408 4-419 1-410 (429)
3 PRK03003 GTP-binding protein D 100.0 4.2E-72 9.1E-77 554.2 51.0 408 2-419 38-446 (472)
4 PRK00093 GTP-binding protein D 100.0 1.3E-70 2.8E-75 542.3 52.6 409 2-419 1-410 (435)
5 PRK09518 bifunctional cytidyla 100.0 2.8E-68 6E-73 549.9 50.5 410 2-419 275-685 (712)
6 COG1159 Era GTPase [General fu 100.0 4.7E-28 1E-32 215.3 19.6 178 181-364 5-183 (298)
7 PF02421 FeoB_N: Ferrous iron 100.0 6.7E-28 1.5E-32 199.7 14.6 156 183-348 1-156 (156)
8 COG1159 Era GTPase [General fu 99.9 7.3E-27 1.6E-31 207.7 18.3 163 4-167 8-176 (298)
9 COG0486 ThdF Predicted GTPase 99.9 1E-26 2.2E-31 218.7 19.9 164 180-355 215-378 (454)
10 COG1160 Predicted GTPases [Gen 99.9 1E-26 2.3E-31 218.0 19.0 162 183-353 4-165 (444)
11 KOG1191|consensus 99.9 1.2E-27 2.6E-32 223.9 10.1 173 180-355 266-452 (531)
12 TIGR00436 era GTP-binding prot 99.9 6.1E-26 1.3E-30 209.4 19.8 170 184-360 2-171 (270)
13 PF02421 FeoB_N: Ferrous iron 99.9 4.4E-26 9.4E-31 188.9 15.2 150 4-158 2-156 (156)
14 cd01895 EngA2 EngA2 subfamily. 99.9 3.2E-25 6.9E-30 191.1 20.9 170 182-351 2-173 (174)
15 PRK15494 era GTPase Era; Provi 99.9 5.6E-25 1.2E-29 208.4 19.4 175 180-361 50-224 (339)
16 PRK09518 bifunctional cytidyla 99.9 1.2E-24 2.6E-29 225.6 22.6 164 181-354 274-437 (712)
17 TIGR00436 era GTP-binding prot 99.9 1.6E-24 3.5E-29 199.9 20.0 162 4-167 2-168 (270)
18 KOG0084|consensus 99.9 6.1E-25 1.3E-29 182.3 14.9 163 180-357 7-176 (205)
19 COG0486 ThdF Predicted GTPase 99.9 2.4E-24 5.3E-29 202.7 19.4 160 3-165 218-378 (454)
20 PRK15494 era GTPase Era; Provi 99.9 8.1E-24 1.8E-28 200.5 20.3 163 4-167 54-220 (339)
21 KOG0092|consensus 99.9 9.4E-25 2E-29 180.5 11.6 163 181-358 4-172 (200)
22 cd01894 EngA1 EngA1 subfamily. 99.9 1.1E-23 2.3E-28 178.6 18.5 155 6-161 1-156 (157)
23 cd04171 SelB SelB subfamily. 99.9 1.4E-23 3.1E-28 179.2 19.4 156 184-350 2-163 (164)
24 PRK00089 era GTPase Era; Revie 99.9 2.9E-23 6.4E-28 194.2 22.7 173 181-359 4-177 (292)
25 KOG0094|consensus 99.9 8.4E-24 1.8E-28 174.7 15.1 161 181-356 21-188 (221)
26 PRK05291 trmE tRNA modificatio 99.9 1.3E-23 2.9E-28 206.1 19.2 158 181-354 214-371 (449)
27 cd04120 Rab12 Rab12 subfamily. 99.9 1.1E-23 2.4E-28 185.1 16.6 158 183-354 1-164 (202)
28 cd01894 EngA1 EngA1 subfamily. 99.9 3E-23 6.4E-28 175.9 18.4 156 186-351 1-156 (157)
29 KOG0078|consensus 99.9 1.4E-23 3.1E-28 177.0 15.9 160 180-354 10-175 (207)
30 KOG0084|consensus 99.9 1.6E-23 3.6E-28 173.8 14.2 154 2-165 9-174 (205)
31 cd01897 NOG NOG1 is a nucleola 99.9 5.3E-23 1.1E-27 176.6 18.1 161 183-352 1-167 (168)
32 cd04164 trmE TrmE (MnmE, ThdF, 99.9 9.4E-23 2E-27 172.7 19.2 155 183-352 2-156 (157)
33 KOG0394|consensus 99.9 7.4E-24 1.6E-28 173.2 11.5 165 181-357 8-182 (210)
34 TIGR00450 mnmE_trmE_thdF tRNA 99.9 5.3E-23 1.2E-27 200.6 19.4 161 180-354 201-361 (442)
35 PRK03003 GTP-binding protein D 99.9 9.2E-23 2E-27 202.4 19.9 164 181-354 37-200 (472)
36 TIGR03156 GTP_HflX GTP-binding 99.9 1.3E-22 2.8E-27 192.5 19.8 158 181-351 188-350 (351)
37 cd01898 Obg Obg subfamily. Th 99.9 1.2E-22 2.6E-27 174.7 17.5 160 184-351 2-169 (170)
38 TIGR03594 GTPase_EngA ribosome 99.9 1.2E-22 2.6E-27 200.6 19.3 161 184-354 1-161 (429)
39 cd04142 RRP22 RRP22 subfamily. 99.9 1.2E-22 2.7E-27 178.5 17.3 182 183-373 1-191 (198)
40 TIGR03156 GTP_HflX GTP-binding 99.9 2.1E-22 4.5E-27 191.1 19.4 156 3-161 190-350 (351)
41 cd01897 NOG NOG1 is a nucleola 99.9 2.5E-22 5.5E-27 172.4 18.3 158 3-162 1-167 (168)
42 cd04138 H_N_K_Ras_like H-Ras/N 99.9 2.8E-22 6.1E-27 170.8 18.0 153 183-352 2-161 (162)
43 cd01889 SelB_euk SelB subfamil 99.9 1.8E-22 3.8E-27 177.2 17.2 160 183-353 1-186 (192)
44 cd04121 Rab40 Rab40 subfamily. 99.9 2.1E-22 4.6E-27 175.3 17.4 158 181-354 5-168 (189)
45 PRK12299 obgE GTPase CgtA; Rev 99.9 2.7E-22 5.7E-27 188.8 19.3 165 183-355 159-330 (335)
46 KOG0094|consensus 99.9 2.1E-22 4.6E-27 166.4 16.0 154 3-167 23-189 (221)
47 PRK00089 era GTPase Era; Revie 99.9 4E-22 8.6E-27 186.6 20.1 164 3-167 6-175 (292)
48 cd01858 NGP_1 NGP-1. Autoanti 99.9 1E-22 2.2E-27 172.7 14.5 149 77-240 3-157 (157)
49 KOG0092|consensus 99.9 7.3E-23 1.6E-27 169.3 12.3 153 3-166 6-170 (200)
50 cd04133 Rop_like Rop subfamily 99.9 1.3E-22 2.9E-27 174.6 14.2 157 183-352 2-172 (176)
51 cd04149 Arf6 Arf6 subfamily. 99.9 4.2E-22 9.1E-27 170.9 17.0 155 181-350 8-167 (168)
52 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 2.8E-22 6.1E-27 172.6 15.9 156 182-354 2-165 (172)
53 cd01874 Cdc42 Cdc42 subfamily. 99.9 1.9E-22 4E-27 174.2 14.7 156 183-351 2-173 (175)
54 PRK12298 obgE GTPase CgtA; Rev 99.9 1.1E-21 2.4E-26 188.1 21.5 171 183-360 160-340 (390)
55 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 2.6E-22 5.6E-27 173.9 15.3 159 181-352 4-179 (182)
56 cd04145 M_R_Ras_like M-Ras/R-R 99.9 4.2E-22 9.1E-27 170.2 16.5 155 182-352 2-163 (164)
57 COG0218 Predicted GTPase [Gene 99.9 3.7E-21 8.1E-26 162.4 21.7 170 181-354 23-198 (200)
58 cd04136 Rap_like Rap-like subf 99.9 2.9E-22 6.2E-27 171.0 15.3 153 183-352 2-162 (163)
59 TIGR03598 GTPase_YsxC ribosome 99.9 1.3E-21 2.9E-26 169.6 19.4 159 180-342 16-179 (179)
60 KOG0098|consensus 99.9 2E-22 4.3E-27 165.2 13.2 159 181-354 5-169 (216)
61 cd04144 Ras2 Ras2 subfamily. 99.9 3.6E-22 7.7E-27 175.0 15.8 155 184-355 1-165 (190)
62 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 4E-22 8.6E-27 176.3 16.2 159 183-355 1-170 (201)
63 cd04163 Era Era subfamily. Er 99.9 2.7E-21 5.8E-26 165.2 20.9 164 182-351 3-167 (168)
64 cd01890 LepA LepA subfamily. 99.9 7E-22 1.5E-26 171.5 17.4 156 184-352 2-176 (179)
65 PF00009 GTP_EFTU: Elongation 99.9 9.5E-22 2.1E-26 171.9 18.2 161 181-353 2-187 (188)
66 cd04175 Rap1 Rap1 subgroup. T 99.9 4.1E-22 8.9E-27 170.4 15.5 153 183-352 2-162 (164)
67 cd01879 FeoB Ferrous iron tran 99.9 5.9E-22 1.3E-26 168.1 16.3 154 187-352 1-156 (158)
68 PRK00093 GTP-binding protein D 99.9 9.4E-22 2E-26 194.4 20.1 160 183-352 2-161 (435)
69 cd04112 Rab26 Rab26 subfamily. 99.9 6.7E-22 1.5E-26 173.4 16.7 158 183-356 1-166 (191)
70 cd04127 Rab27A Rab27a subfamil 99.9 6.7E-22 1.5E-26 171.8 16.3 157 181-353 3-177 (180)
71 cd04154 Arl2 Arl2 subfamily. 99.9 8.8E-22 1.9E-26 169.9 16.8 155 181-350 13-172 (173)
72 KOG0087|consensus 99.9 1.8E-22 3.8E-27 169.4 11.8 160 180-354 12-177 (222)
73 PRK00454 engB GTP-binding prot 99.9 3.8E-21 8.2E-26 169.4 21.1 170 180-354 22-195 (196)
74 cd04171 SelB SelB subfamily. 99.9 1E-21 2.2E-26 167.8 16.9 148 4-160 2-163 (164)
75 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 9.2E-22 2E-26 168.6 16.7 155 183-353 3-164 (166)
76 TIGR02729 Obg_CgtA Obg family 99.9 1.5E-21 3.3E-26 183.5 19.6 161 183-352 158-328 (329)
77 cd01875 RhoG RhoG subfamily. 99.9 6.5E-22 1.4E-26 173.4 15.9 159 182-353 3-177 (191)
78 cd04150 Arf1_5_like Arf1-Arf5- 99.9 1.3E-21 2.8E-26 166.3 17.2 153 183-350 1-158 (159)
79 cd04131 Rnd Rnd subfamily. Th 99.9 5.8E-22 1.3E-26 171.3 15.1 156 183-351 2-174 (178)
80 PRK11058 GTPase HflX; Provisio 99.9 1.2E-21 2.7E-26 190.0 19.0 161 2-164 197-363 (426)
81 cd00881 GTP_translation_factor 99.9 1.8E-21 3.8E-26 170.3 18.2 159 184-353 1-187 (189)
82 smart00173 RAS Ras subfamily o 99.9 8.2E-22 1.8E-26 168.5 15.7 154 183-353 1-162 (164)
83 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 1.4E-21 3E-26 168.0 17.1 158 184-354 2-166 (170)
84 cd04128 Spg1 Spg1p. Spg1p (se 99.9 1.9E-21 4.2E-26 168.8 18.1 159 183-355 1-168 (182)
85 cd04122 Rab14 Rab14 subfamily. 99.9 1.3E-21 2.9E-26 167.6 16.9 154 183-352 3-163 (166)
86 cd04124 RabL2 RabL2 subfamily. 99.9 3E-21 6.4E-26 164.6 18.8 154 183-354 1-159 (161)
87 cd04140 ARHI_like ARHI subfami 99.9 7.6E-22 1.6E-26 168.9 15.0 152 183-351 2-163 (165)
88 KOG0080|consensus 99.9 2.6E-22 5.7E-27 160.0 11.0 161 181-356 10-177 (209)
89 cd04134 Rho3 Rho3 subfamily. 99.9 1E-21 2.2E-26 171.9 16.0 159 183-354 1-175 (189)
90 PRK12296 obgE GTPase CgtA; Rev 99.9 3E-21 6.5E-26 188.1 20.5 169 182-359 159-346 (500)
91 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 1.6E-21 3.4E-26 174.3 17.1 161 181-354 12-189 (232)
92 cd04176 Rap2 Rap2 subgroup. T 99.9 7.6E-22 1.7E-26 168.5 14.4 153 183-352 2-162 (163)
93 cd04109 Rab28 Rab28 subfamily. 99.9 1.3E-21 2.9E-26 174.7 16.5 157 183-355 1-168 (215)
94 cd01871 Rac1_like Rac1-like su 99.9 8.9E-22 1.9E-26 169.8 14.6 156 183-351 2-173 (174)
95 cd01865 Rab3 Rab3 subfamily. 99.9 1.9E-21 4.2E-26 166.4 16.6 155 183-353 2-163 (165)
96 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 5.2E-21 1.1E-25 164.1 19.3 157 184-353 2-166 (168)
97 cd01864 Rab19 Rab19 subfamily. 99.9 1.9E-21 4.1E-26 166.5 16.5 156 182-351 3-164 (165)
98 PLN00223 ADP-ribosylation fact 99.9 3E-21 6.4E-26 167.5 17.8 155 181-354 16-179 (181)
99 cd04119 RJL RJL (RabJ-Like) su 99.9 2E-21 4.2E-26 166.6 16.4 154 183-352 1-166 (168)
100 cd01868 Rab11_like Rab11-like. 99.9 1.9E-21 4.1E-26 166.4 16.2 155 182-352 3-164 (165)
101 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 1.8E-21 3.9E-26 169.4 16.3 161 181-354 2-171 (183)
102 PRK05291 trmE tRNA modificatio 99.9 2.8E-21 6E-26 189.8 19.5 155 3-163 216-370 (449)
103 PLN03118 Rab family protein; P 99.9 8.6E-22 1.9E-26 175.5 14.4 158 181-355 13-179 (211)
104 PTZ00133 ADP-ribosylation fact 99.9 3.4E-21 7.4E-26 167.4 17.8 160 181-355 16-180 (182)
105 smart00177 ARF ARF-like small 99.9 3.3E-21 7.1E-26 166.5 17.6 157 181-352 12-173 (175)
106 cd01867 Rab8_Rab10_Rab13_like 99.9 2.7E-21 5.8E-26 165.9 16.7 156 182-353 3-165 (167)
107 cd04160 Arfrp1 Arfrp1 subfamil 99.9 2.3E-21 4.9E-26 166.3 16.1 156 184-350 1-166 (167)
108 cd04164 trmE TrmE (MnmE, ThdF, 99.9 9.7E-21 2.1E-25 160.3 19.8 155 3-162 2-156 (157)
109 cd04157 Arl6 Arl6 subfamily. 99.9 2.2E-21 4.8E-26 165.3 16.0 152 184-350 1-161 (162)
110 cd04126 Rab20 Rab20 subfamily. 99.9 3.5E-21 7.5E-26 171.2 17.6 157 183-354 1-191 (220)
111 cd04103 Centaurin_gamma Centau 99.9 1.4E-21 3.1E-26 165.7 14.5 150 183-351 1-157 (158)
112 KOG0078|consensus 99.9 2.5E-21 5.4E-26 163.4 15.6 152 2-165 12-176 (207)
113 cd04143 Rhes_like Rhes_like su 99.9 2.3E-21 4.9E-26 175.8 16.6 156 183-353 1-171 (247)
114 cd04117 Rab15 Rab15 subfamily. 99.9 2.4E-21 5.2E-26 165.1 15.8 153 183-351 1-160 (161)
115 cd01878 HflX HflX subfamily. 99.9 3.7E-21 8.1E-26 170.6 17.5 159 181-351 40-203 (204)
116 cd01884 EF_Tu EF-Tu subfamily. 99.9 5.3E-21 1.1E-25 167.0 18.1 150 182-342 2-172 (195)
117 KOG0095|consensus 99.9 1.8E-21 3.9E-26 153.2 13.5 159 181-354 6-170 (213)
118 PRK11058 GTPase HflX; Provisio 99.9 5.2E-21 1.1E-25 185.6 19.9 162 182-354 197-363 (426)
119 cd01890 LepA LepA subfamily. 99.9 4.7E-21 1E-25 166.3 17.7 153 3-164 1-178 (179)
120 cd04151 Arl1 Arl1 subfamily. 99.9 2.6E-21 5.6E-26 164.4 15.6 152 184-350 1-157 (158)
121 TIGR00450 mnmE_trmE_thdF tRNA 99.9 6E-21 1.3E-25 186.3 20.2 156 3-163 204-360 (442)
122 cd01866 Rab2 Rab2 subfamily. 99.9 4E-21 8.7E-26 164.9 16.9 156 182-353 4-166 (168)
123 cd04106 Rab23_lke Rab23-like s 99.9 2.1E-21 4.5E-26 165.6 14.9 153 183-351 1-161 (162)
124 cd04116 Rab9 Rab9 subfamily. 99.9 3.8E-21 8.1E-26 165.5 16.6 156 181-351 4-169 (170)
125 cd04111 Rab39 Rab39 subfamily. 99.9 1.2E-21 2.6E-26 174.2 13.9 157 183-355 3-168 (211)
126 cd01898 Obg Obg subfamily. Th 99.9 3.5E-21 7.6E-26 165.5 16.2 155 4-161 2-169 (170)
127 PTZ00369 Ras-like protein; Pro 99.9 3.5E-21 7.5E-26 168.6 16.3 157 181-354 4-168 (189)
128 COG0370 FeoB Fe2+ transport sy 99.9 2.4E-21 5.1E-26 190.1 16.7 163 182-356 3-167 (653)
129 PRK12299 obgE GTPase CgtA; Rev 99.9 5.4E-21 1.2E-25 179.9 18.5 160 2-165 158-330 (335)
130 cd04120 Rab12 Rab12 subfamily. 99.9 6.9E-21 1.5E-25 167.4 17.9 149 4-164 2-164 (202)
131 cd01861 Rab6 Rab6 subfamily. 99.9 7.4E-21 1.6E-25 162.0 17.6 153 183-351 1-160 (161)
132 cd01879 FeoB Ferrous iron tran 99.9 5.1E-21 1.1E-25 162.4 16.5 150 7-161 1-155 (158)
133 cd04115 Rab33B_Rab33A Rab33B/R 99.9 4.3E-21 9.2E-26 165.1 16.2 156 182-352 2-168 (170)
134 PLN03110 Rab GTPase; Provision 99.9 4.6E-21 1E-25 171.1 16.9 158 181-354 11-175 (216)
135 cd04158 ARD1 ARD1 subfamily. 99.9 5E-21 1.1E-25 164.5 16.5 157 184-356 1-164 (169)
136 PRK04213 GTP-binding protein; 99.9 1.2E-20 2.6E-25 166.9 19.4 167 181-355 8-194 (201)
137 PLN03071 GTP-binding nuclear p 99.9 3.5E-21 7.5E-26 172.1 16.0 159 180-355 11-174 (219)
138 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 5.6E-21 1.2E-25 165.0 16.8 154 182-350 15-173 (174)
139 PRK12297 obgE GTPase CgtA; Rev 99.9 1E-20 2.2E-25 182.3 20.2 162 183-356 159-330 (424)
140 cd04132 Rho4_like Rho4-like su 99.9 3E-21 6.4E-26 168.8 15.1 161 183-356 1-170 (187)
141 cd00877 Ran Ran (Ras-related n 99.9 3.4E-21 7.5E-26 164.9 15.1 155 183-354 1-160 (166)
142 cd04130 Wrch_1 Wrch-1 subfamil 99.9 1.5E-21 3.3E-26 168.4 13.0 155 183-350 1-171 (173)
143 smart00174 RHO Rho (Ras homolo 99.9 2.9E-21 6.2E-26 166.8 14.5 155 185-352 1-171 (174)
144 cd01895 EngA2 EngA2 subfamily. 99.9 1.8E-20 4E-25 161.3 19.3 159 3-161 3-173 (174)
145 cd04110 Rab35 Rab35 subfamily. 99.9 6.7E-21 1.4E-25 168.1 16.8 158 181-354 5-168 (199)
146 cd01856 YlqF YlqF. Proteins o 99.9 5.6E-21 1.2E-25 164.2 15.9 162 69-240 6-170 (171)
147 KOG0079|consensus 99.9 9.3E-22 2E-26 154.6 9.8 160 182-356 8-172 (198)
148 cd01891 TypA_BipA TypA (tyrosi 99.9 1.1E-20 2.4E-25 166.1 17.8 150 183-344 3-173 (194)
149 cd01893 Miro1 Miro1 subfamily. 99.9 4.3E-21 9.3E-26 164.4 14.7 155 183-353 1-164 (166)
150 smart00175 RAB Rab subfamily o 99.9 7.7E-21 1.7E-25 162.3 16.2 155 183-353 1-162 (164)
151 cd04101 RabL4 RabL4 (Rab-like4 99.9 7.6E-21 1.6E-25 162.5 16.2 155 183-352 1-163 (164)
152 cd04118 Rab24 Rab24 subfamily. 99.9 4.7E-21 1E-25 168.4 15.3 159 183-354 1-167 (193)
153 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.1E-20 2.3E-25 160.6 16.9 152 184-350 1-157 (158)
154 cd04136 Rap_like Rap-like subf 99.9 1.1E-20 2.3E-25 161.3 17.1 148 3-162 2-162 (163)
155 KOG0098|consensus 99.9 4.6E-21 9.9E-26 157.2 13.8 152 2-164 6-169 (216)
156 cd04138 H_N_K_Ras_like H-Ras/N 99.9 1.1E-20 2.5E-25 160.8 16.9 148 3-162 2-161 (162)
157 cd01859 MJ1464 MJ1464. This f 99.9 9.5E-21 2.1E-25 160.5 16.2 150 74-240 4-156 (156)
158 cd04145 M_R_Ras_like M-Ras/R-R 99.9 1.8E-20 4E-25 160.0 18.1 149 2-162 2-163 (164)
159 cd04166 CysN_ATPS CysN_ATPS su 99.9 3.7E-21 8E-26 170.7 14.2 150 184-344 1-185 (208)
160 cd01878 HflX HflX subfamily. 99.9 1.6E-20 3.4E-25 166.6 18.0 158 2-161 41-203 (204)
161 cd04156 ARLTS1 ARLTS1 subfamil 99.9 7.8E-21 1.7E-25 161.7 15.4 152 184-350 1-159 (160)
162 cd01861 Rab6 Rab6 subfamily. 99.9 1.8E-20 4E-25 159.6 17.7 148 3-161 1-160 (161)
163 cd04146 RERG_RasL11_like RERG/ 99.9 2.8E-21 6.1E-26 165.4 12.7 154 184-353 1-164 (165)
164 cd04113 Rab4 Rab4 subfamily. 99.9 5.5E-21 1.2E-25 162.8 14.4 153 183-351 1-160 (161)
165 cd01862 Rab7 Rab7 subfamily. 99.9 1.4E-20 3E-25 162.1 17.1 159 183-355 1-169 (172)
166 cd01881 Obg_like The Obg-like 99.9 4.3E-21 9.4E-26 165.9 13.9 157 187-351 1-175 (176)
167 cd04163 Era Era subfamily. Er 99.9 3.8E-20 8.3E-25 158.0 19.7 158 3-161 4-167 (168)
168 smart00173 RAS Ras subfamily o 99.9 1.4E-20 3E-25 160.8 16.7 149 3-163 1-162 (164)
169 cd01891 TypA_BipA TypA (tyrosi 99.9 2.3E-20 5.1E-25 164.0 18.4 152 2-163 2-192 (194)
170 cd04121 Rab40 Rab40 subfamily. 99.9 2.1E-20 4.6E-25 162.7 17.8 150 3-164 7-168 (189)
171 cd04144 Ras2 Ras2 subfamily. 99.9 1.7E-20 3.7E-25 164.3 17.2 149 4-164 1-164 (190)
172 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.9E-20 4.2E-25 160.6 17.2 149 3-161 1-164 (168)
173 cd01863 Rab18 Rab18 subfamily. 99.9 1.5E-20 3.3E-25 160.1 16.4 153 183-351 1-160 (161)
174 KOG1423|consensus 99.9 8.4E-21 1.8E-25 167.8 15.0 181 179-359 69-277 (379)
175 cd01864 Rab19 Rab19 subfamily. 99.9 2.5E-20 5.4E-25 159.5 17.8 150 2-161 3-164 (165)
176 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 1.3E-20 2.9E-25 167.5 16.5 159 183-354 2-177 (222)
177 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 2.5E-20 5.4E-25 160.5 17.7 150 3-164 3-165 (172)
178 PRK09554 feoB ferrous iron tra 99.9 2.9E-20 6.2E-25 192.0 21.3 164 182-353 3-168 (772)
179 cd04139 RalA_RalB RalA/RalB su 99.9 2.5E-20 5.5E-25 159.1 17.6 154 183-353 1-162 (164)
180 TIGR03596 GTPase_YlqF ribosome 99.9 7.1E-21 1.5E-25 175.8 15.1 165 70-244 9-177 (276)
181 cd04147 Ras_dva Ras-dva subfam 99.9 1.8E-20 3.9E-25 165.3 17.0 157 184-354 1-164 (198)
182 TIGR00475 selB selenocysteine- 99.9 2.2E-20 4.7E-25 188.6 19.8 162 183-355 1-168 (581)
183 KOG0093|consensus 99.9 4.6E-21 9.9E-26 150.6 11.5 160 181-356 20-186 (193)
184 cd04125 RabA_like RabA-like su 99.9 9.8E-21 2.1E-25 165.6 15.1 157 183-355 1-164 (188)
185 cd01860 Rab5_related Rab5-rela 99.9 2.1E-20 4.6E-25 159.5 16.9 153 183-352 2-162 (163)
186 cd01892 Miro2 Miro2 subfamily. 99.9 7.7E-21 1.7E-25 163.2 14.1 159 180-353 2-166 (169)
187 cd04175 Rap1 Rap1 subgroup. T 99.9 2.7E-20 5.9E-25 159.1 17.4 148 3-162 2-162 (164)
188 cd01888 eIF2_gamma eIF2-gamma 99.9 3.2E-20 6.9E-25 164.1 18.3 161 183-354 1-200 (203)
189 cd04142 RRP22 RRP22 subfamily. 99.9 3.5E-20 7.6E-25 162.9 18.3 160 4-165 2-176 (198)
190 TIGR02528 EutP ethanolamine ut 99.9 5.7E-21 1.2E-25 159.2 12.6 140 184-349 2-141 (142)
191 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 3.3E-20 7.1E-25 158.9 17.7 149 3-162 3-163 (166)
192 cd04135 Tc10 TC10 subfamily. 99.9 1.4E-20 3.1E-25 162.4 15.5 157 183-352 1-173 (174)
193 cd04114 Rab30 Rab30 subfamily. 99.9 1.4E-20 3.1E-25 161.6 15.4 155 181-351 6-167 (169)
194 cd04158 ARD1 ARD1 subfamily. 99.9 1.5E-20 3.3E-25 161.5 15.4 150 4-166 1-164 (169)
195 cd04122 Rab14 Rab14 subfamily. 99.9 5.3E-20 1.1E-24 157.6 18.5 148 2-163 2-164 (166)
196 cd04149 Arf6 Arf6 subfamily. 99.9 2.1E-20 4.5E-25 160.3 16.0 145 3-160 10-167 (168)
197 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 3.1E-20 6.6E-25 164.2 17.5 153 3-165 1-170 (201)
198 cd01865 Rab3 Rab3 subfamily. 99.9 3.6E-20 7.8E-25 158.5 17.4 149 3-163 2-163 (165)
199 PRK12298 obgE GTPase CgtA; Rev 99.9 2.9E-20 6.3E-25 178.4 18.5 162 3-167 160-337 (390)
200 KOG0087|consensus 99.9 5.4E-21 1.2E-25 160.5 11.6 153 2-165 14-178 (222)
201 cd04124 RabL2 RabL2 subfamily. 99.9 2.5E-20 5.4E-25 158.8 16.0 150 4-164 2-159 (161)
202 TIGR02729 Obg_CgtA Obg family 99.9 3E-20 6.4E-25 174.9 17.9 157 2-162 157-328 (329)
203 cd01867 Rab8_Rab10_Rab13_like 99.8 4.9E-20 1.1E-24 158.0 17.5 151 2-163 3-165 (167)
204 COG0218 Predicted GTPase [Gene 99.8 7.3E-20 1.6E-24 154.6 18.0 160 2-164 24-198 (200)
205 cd01868 Rab11_like Rab11-like. 99.8 5.2E-20 1.1E-24 157.5 17.6 149 3-162 4-164 (165)
206 cd04119 RJL RJL (RabJ-Like) su 99.8 5.4E-20 1.2E-24 157.6 17.7 148 4-162 2-166 (168)
207 cd01849 YlqF_related_GTPase Yl 99.8 1.1E-20 2.4E-25 159.7 13.2 150 84-240 1-155 (155)
208 cd04109 Rab28 Rab28 subfamily. 99.8 4.2E-20 9.1E-25 165.0 17.6 152 3-165 1-168 (215)
209 smart00178 SAR Sar1p-like memb 99.8 3.3E-20 7.1E-25 161.6 16.4 156 181-351 16-183 (184)
210 KOG0095|consensus 99.8 1.3E-20 2.9E-25 148.4 12.2 153 2-164 7-170 (213)
211 cd01889 SelB_euk SelB subfamil 99.8 3.8E-20 8.2E-25 162.4 16.7 152 4-164 2-187 (192)
212 cd01855 YqeH YqeH. YqeH is an 99.8 1.6E-20 3.4E-25 164.5 14.2 147 72-240 24-190 (190)
213 cd04112 Rab26 Rab26 subfamily. 99.8 4.9E-20 1.1E-24 161.6 17.2 152 3-165 1-165 (191)
214 cd04176 Rap2 Rap2 subgroup. T 99.8 4.5E-20 9.9E-25 157.5 16.5 148 3-162 2-162 (163)
215 cd04127 Rab27A Rab27a subfamil 99.8 5.5E-20 1.2E-24 159.7 17.3 150 2-162 4-176 (180)
216 cd00881 GTP_translation_factor 99.8 6.2E-20 1.3E-24 160.5 17.7 152 4-164 1-188 (189)
217 PRK12296 obgE GTPase CgtA; Rev 99.8 5.4E-20 1.2E-24 179.3 18.8 159 3-165 160-342 (500)
218 cd00879 Sar1 Sar1 subfamily. 99.8 5.1E-20 1.1E-24 161.4 16.9 156 181-351 18-189 (190)
219 cd04148 RGK RGK subfamily. Th 99.8 3.2E-20 7E-25 166.1 15.8 153 183-353 1-163 (221)
220 cd00157 Rho Rho (Ras homology) 99.8 2.9E-20 6.2E-25 160.0 15.0 155 183-350 1-170 (171)
221 cd04177 RSR1 RSR1 subgroup. R 99.8 3.8E-20 8.2E-25 158.9 15.7 154 183-352 2-163 (168)
222 cd04140 ARHI_like ARHI subfami 99.8 8.9E-20 1.9E-24 156.1 17.8 146 3-160 2-162 (165)
223 cd04157 Arl6 Arl6 subfamily. 99.8 6.6E-20 1.4E-24 156.3 16.9 146 4-160 1-161 (162)
224 cd01870 RhoA_like RhoA-like su 99.8 4E-20 8.6E-25 159.8 15.8 157 183-352 2-174 (175)
225 cd04155 Arl3 Arl3 subfamily. 99.8 5.4E-20 1.2E-24 158.7 16.5 155 181-350 13-172 (173)
226 cd00880 Era_like Era (E. coli 99.8 1.3E-19 2.9E-24 153.3 18.7 161 187-351 1-162 (163)
227 smart00177 ARF ARF-like small 99.8 7.1E-20 1.5E-24 158.2 17.2 147 3-162 14-173 (175)
228 PRK04213 GTP-binding protein; 99.8 9.2E-20 2E-24 161.3 18.3 158 2-165 9-194 (201)
229 cd01866 Rab2 Rab2 subfamily. 99.8 9.8E-20 2.1E-24 156.3 17.8 150 3-163 5-166 (168)
230 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 7.2E-20 1.6E-24 163.7 17.5 151 3-164 14-189 (232)
231 PRK12297 obgE GTPase CgtA; Rev 99.8 5.5E-20 1.2E-24 177.2 17.9 159 3-165 159-329 (424)
232 cd01873 RhoBTB RhoBTB subfamil 99.8 1.5E-20 3.3E-25 164.6 12.9 156 182-351 2-194 (195)
233 PRK09563 rbgA GTPase YlqF; Rev 99.8 3.3E-20 7.1E-25 172.3 15.8 165 70-244 12-180 (287)
234 PLN00223 ADP-ribosylation fact 99.8 7.5E-20 1.6E-24 158.7 17.1 148 3-163 18-178 (181)
235 PRK12317 elongation factor 1-a 99.8 5E-20 1.1E-24 181.0 17.9 155 181-346 5-198 (425)
236 KOG0394|consensus 99.8 1.4E-20 2.9E-25 154.2 11.4 153 3-165 10-180 (210)
237 cd04150 Arf1_5_like Arf1-Arf5- 99.8 7.9E-20 1.7E-24 155.3 16.7 144 4-160 2-158 (159)
238 cd04133 Rop_like Rop subfamily 99.8 4.7E-20 1E-24 158.8 15.4 149 3-162 2-172 (176)
239 cd01857 HSR1_MMR1 HSR1/MMR1. 99.8 4.3E-20 9.3E-25 153.4 14.7 131 74-241 3-139 (141)
240 cd01874 Cdc42 Cdc42 subfamily. 99.8 6.2E-20 1.3E-24 158.5 16.2 148 3-161 2-173 (175)
241 cd00877 Ran Ran (Ras-related n 99.8 7.8E-20 1.7E-24 156.5 16.6 152 3-165 1-161 (166)
242 PF00009 GTP_EFTU: Elongation 99.8 3.5E-20 7.5E-25 162.0 14.7 152 3-163 4-187 (188)
243 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 8.1E-20 1.8E-24 158.3 16.6 149 2-161 5-178 (182)
244 cd04154 Arl2 Arl2 subfamily. 99.8 7.4E-20 1.6E-24 157.9 16.2 145 3-160 15-172 (173)
245 cd04131 Rnd Rnd subfamily. Th 99.8 7.8E-20 1.7E-24 158.0 16.3 149 2-161 1-174 (178)
246 cd00154 Rab Rab family. Rab G 99.8 7.8E-20 1.7E-24 154.7 16.0 152 183-349 1-158 (159)
247 cd04160 Arfrp1 Arfrp1 subfamil 99.8 6E-20 1.3E-24 157.4 15.3 148 4-160 1-166 (167)
248 PRK00454 engB GTP-binding prot 99.8 2E-19 4.4E-24 158.4 18.9 160 2-164 24-195 (196)
249 cd04106 Rab23_lke Rab23-like s 99.8 1.2E-19 2.6E-24 154.6 16.9 147 4-161 2-161 (162)
250 cd04143 Rhes_like Rhes_like su 99.8 2.5E-19 5.3E-24 162.5 19.6 149 3-162 1-170 (247)
251 PLN03108 Rab family protein; P 99.8 1.1E-19 2.3E-24 161.7 16.9 158 181-354 5-169 (210)
252 smart00175 RAB Rab subfamily o 99.8 2.2E-19 4.7E-24 153.3 18.2 151 3-164 1-163 (164)
253 cd01892 Miro2 Miro2 subfamily. 99.8 7.8E-20 1.7E-24 157.0 15.5 150 3-163 5-166 (169)
254 cd04123 Rab21 Rab21 subfamily. 99.8 1E-19 2.2E-24 155.0 16.1 154 183-352 1-161 (162)
255 cd04161 Arl2l1_Arl13_like Arl2 99.8 1.2E-19 2.5E-24 155.6 16.3 152 184-350 1-166 (167)
256 cd01881 Obg_like The Obg-like 99.8 2.8E-20 6.2E-25 160.7 12.7 152 7-161 1-175 (176)
257 cd04110 Rab35 Rab35 subfamily. 99.8 1.8E-19 3.9E-24 159.0 17.9 153 2-165 6-169 (199)
258 cd04117 Rab15 Rab15 subfamily. 99.8 2.2E-19 4.8E-24 153.0 17.7 148 3-161 1-160 (161)
259 smart00176 RAN Ran (Ras-relate 99.8 1.3E-19 2.9E-24 159.0 16.7 150 188-354 1-155 (200)
260 cd01875 RhoG RhoG subfamily. 99.8 1.4E-19 3.1E-24 158.5 17.0 153 1-164 1-178 (191)
261 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 9.3E-20 2E-24 155.7 15.3 152 184-349 1-162 (164)
262 cd04151 Arl1 Arl1 subfamily. 99.8 1.6E-19 3.4E-24 153.4 16.7 144 4-160 1-157 (158)
263 TIGR03598 GTPase_YsxC ribosome 99.8 1.4E-19 3.1E-24 156.9 16.7 147 3-152 19-179 (179)
264 smart00178 SAR Sar1p-like memb 99.8 2.2E-19 4.7E-24 156.4 17.9 146 3-161 18-183 (184)
265 cd04128 Spg1 Spg1p. Spg1p (se 99.8 1E-19 2.2E-24 158.0 15.6 150 3-165 1-168 (182)
266 PTZ00369 Ras-like protein; Pro 99.8 1.7E-19 3.6E-24 157.9 17.0 151 3-165 6-169 (189)
267 TIGR00231 small_GTP small GTP- 99.8 6.7E-20 1.4E-24 155.0 14.1 151 183-349 2-160 (161)
268 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 1.7E-19 3.7E-24 155.0 16.8 148 4-163 2-165 (170)
269 KOG0080|consensus 99.8 3.4E-20 7.5E-25 148.0 11.4 155 3-168 12-179 (209)
270 PTZ00133 ADP-ribosylation fact 99.8 2.1E-19 4.5E-24 156.2 17.2 148 3-163 18-178 (182)
271 cd04101 RabL4 RabL4 (Rab-like4 99.8 2.9E-19 6.2E-24 152.7 17.8 149 4-162 2-163 (164)
272 PF01926 MMR_HSR1: 50S ribosom 99.8 1.8E-19 4E-24 144.6 15.6 116 4-120 1-116 (116)
273 KOG1191|consensus 99.8 1.2E-19 2.6E-24 170.5 16.3 161 3-163 269-450 (531)
274 cd04113 Rab4 Rab4 subfamily. 99.8 2.5E-19 5.4E-24 152.6 17.1 148 3-161 1-160 (161)
275 PRK10512 selenocysteinyl-tRNA- 99.8 2.6E-19 5.7E-24 181.2 20.1 160 184-354 2-167 (614)
276 KOG0091|consensus 99.8 4.9E-20 1.1E-24 147.6 11.7 159 182-355 8-175 (213)
277 TIGR03597 GTPase_YqeH ribosome 99.8 4.9E-20 1.1E-24 176.1 13.9 226 71-323 52-296 (360)
278 TIGR00437 feoB ferrous iron tr 99.8 1.2E-19 2.5E-24 183.5 17.4 154 189-352 1-154 (591)
279 TIGR02528 EutP ethanolamine ut 99.8 8.2E-20 1.8E-24 152.2 13.6 136 3-159 1-141 (142)
280 TIGR00487 IF-2 translation ini 99.8 1.7E-19 3.8E-24 181.1 18.4 158 180-350 85-247 (587)
281 cd04137 RheB Rheb (Ras Homolog 99.8 2.1E-19 4.5E-24 156.1 16.6 157 183-356 2-166 (180)
282 cd04116 Rab9 Rab9 subfamily. 99.8 3.4E-19 7.5E-24 153.2 17.6 149 3-161 6-169 (170)
283 cd01871 Rac1_like Rac1-like su 99.8 2.4E-19 5.2E-24 154.6 16.5 148 3-161 2-173 (174)
284 PRK15467 ethanolamine utilizat 99.8 1.3E-19 2.8E-24 153.5 14.6 147 184-355 3-149 (158)
285 cd00876 Ras Ras family. The R 99.8 3E-19 6.5E-24 151.7 16.8 152 184-351 1-159 (160)
286 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 2.2E-19 4.8E-24 156.3 16.2 151 3-164 4-171 (183)
287 KOG0079|consensus 99.8 3.8E-20 8.2E-25 145.6 10.1 151 3-165 9-171 (198)
288 KOG1423|consensus 99.8 1.5E-19 3.3E-24 159.9 15.1 163 4-166 74-274 (379)
289 KOG0086|consensus 99.8 1.8E-19 3.9E-24 142.6 13.9 159 181-354 8-172 (214)
290 cd04159 Arl10_like Arl10-like 99.8 3.6E-19 7.9E-24 150.7 16.8 152 185-350 2-158 (159)
291 PLN03110 Rab GTPase; Provision 99.8 3.9E-19 8.5E-24 158.7 17.7 151 3-164 13-175 (216)
292 cd04165 GTPBP1_like GTPBP1-lik 99.8 4.9E-19 1.1E-23 158.0 18.2 156 184-350 1-220 (224)
293 cd04139 RalA_RalB RalA/RalB su 99.8 4.8E-19 1E-23 151.1 17.5 148 3-162 1-161 (164)
294 cd04178 Nucleostemin_like Nucl 99.8 6.9E-20 1.5E-24 156.3 12.0 142 84-240 1-172 (172)
295 cd01862 Rab7 Rab7 subfamily. 99.8 5.5E-19 1.2E-23 152.1 17.9 152 3-164 1-168 (172)
296 PLN03071 GTP-binding nuclear p 99.8 2.6E-19 5.5E-24 160.1 16.1 153 3-165 14-174 (219)
297 cd04126 Rab20 Rab20 subfamily. 99.8 3.9E-19 8.5E-24 158.0 17.0 147 4-163 2-190 (220)
298 KOG0088|consensus 99.8 1.3E-20 2.9E-25 149.9 6.7 160 181-355 12-177 (218)
299 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 4.8E-19 1E-23 152.9 17.1 145 3-160 16-173 (174)
300 PRK15467 ethanolamine utilizat 99.8 2.5E-19 5.5E-24 151.7 15.0 144 3-165 2-149 (158)
301 cd04125 RabA_like RabA-like su 99.8 4.2E-19 9.1E-24 155.3 16.9 152 3-165 1-164 (188)
302 cd04129 Rho2 Rho2 subfamily. 99.8 1.5E-19 3.3E-24 157.9 14.0 162 183-357 2-177 (187)
303 cd04115 Rab33B_Rab33A Rab33B/R 99.8 5.6E-19 1.2E-23 151.9 17.2 150 3-162 3-168 (170)
304 cd04166 CysN_ATPS CysN_ATPS su 99.8 1.2E-19 2.5E-24 161.1 13.3 141 4-153 1-184 (208)
305 PRK05306 infB translation init 99.8 3.6E-19 7.8E-24 182.9 18.6 159 179-350 287-449 (787)
306 cd01860 Rab5_related Rab5-rela 99.8 3.5E-19 7.6E-24 152.0 15.7 150 3-163 2-163 (163)
307 PLN03118 Rab family protein; P 99.8 2.9E-19 6.3E-24 159.2 15.7 152 3-166 15-180 (211)
308 cd00879 Sar1 Sar1 subfamily. 99.8 5.3E-19 1.1E-23 155.0 17.1 146 3-161 20-189 (190)
309 cd01863 Rab18 Rab18 subfamily. 99.8 8.2E-19 1.8E-23 149.4 17.7 148 3-161 1-160 (161)
310 cd04156 ARLTS1 ARLTS1 subfamil 99.8 3.6E-19 7.9E-24 151.4 15.5 144 4-160 1-159 (160)
311 cd04146 RERG_RasL11_like RERG/ 99.8 2.8E-19 6E-24 153.0 14.8 148 4-162 1-163 (165)
312 TIGR01393 lepA GTP-binding pro 99.8 7E-19 1.5E-23 177.7 20.1 161 182-355 3-182 (595)
313 cd01876 YihA_EngB The YihA (En 99.8 2E-18 4.3E-23 147.8 20.1 164 184-351 1-169 (170)
314 COG1084 Predicted GTPase [Gene 99.8 4.6E-19 9.9E-24 159.3 16.5 158 2-161 168-334 (346)
315 cd04114 Rab30 Rab30 subfamily. 99.8 6E-19 1.3E-23 151.5 16.7 149 3-161 8-167 (169)
316 CHL00071 tufA elongation facto 99.8 5.2E-19 1.1E-23 172.3 18.3 151 180-341 10-181 (409)
317 cd01896 DRG The developmentall 99.8 7.2E-19 1.6E-23 158.2 17.9 154 184-353 2-226 (233)
318 PRK12736 elongation factor Tu; 99.8 5.2E-19 1.1E-23 171.5 18.2 162 180-352 10-200 (394)
319 cd00878 Arf_Arl Arf (ADP-ribos 99.8 6.3E-19 1.4E-23 149.6 16.6 144 4-160 1-157 (158)
320 CHL00189 infB translation init 99.8 5.7E-19 1.2E-23 179.7 19.1 160 180-352 242-409 (742)
321 COG0370 FeoB Fe2+ transport sy 99.8 3.6E-19 7.8E-24 174.9 17.0 160 2-166 3-167 (653)
322 COG2262 HflX GTPases [General 99.8 4.8E-19 1E-23 164.1 16.8 161 3-165 193-358 (411)
323 KOG0093|consensus 99.8 3.5E-19 7.7E-24 140.1 13.5 151 2-165 21-185 (193)
324 cd04118 Rab24 Rab24 subfamily. 99.8 6.9E-19 1.5E-23 154.6 17.1 150 4-164 2-167 (193)
325 cd04132 Rho4_like Rho4-like su 99.8 4.6E-19 1E-23 154.9 15.7 152 4-166 2-170 (187)
326 smart00174 RHO Rho (Ras homolo 99.8 3.5E-19 7.6E-24 153.7 14.7 147 5-162 1-171 (174)
327 cd04177 RSR1 RSR1 subgroup. R 99.8 7.4E-19 1.6E-23 150.9 16.5 149 3-162 2-163 (168)
328 PF01926 MMR_HSR1: 50S ribosom 99.8 6.7E-19 1.5E-23 141.3 15.0 116 184-302 1-116 (116)
329 cd04134 Rho3 Rho3 subfamily. 99.8 4.3E-19 9.3E-24 155.3 15.0 151 3-164 1-175 (189)
330 cd04123 Rab21 Rab21 subfamily. 99.8 1.5E-18 3.3E-23 147.7 17.8 149 3-162 1-161 (162)
331 cd04111 Rab39 Rab39 subfamily. 99.8 6.1E-19 1.3E-23 156.8 15.8 153 2-165 2-168 (211)
332 cd01883 EF1_alpha Eukaryotic e 99.8 4.2E-19 9.1E-24 158.8 14.7 149 184-343 1-195 (219)
333 cd04130 Wrch_1 Wrch-1 subfamil 99.8 6E-19 1.3E-23 152.2 15.0 147 3-160 1-171 (173)
334 TIGR00157 ribosome small subun 99.8 1.5E-19 3.3E-24 163.5 11.7 148 71-245 25-186 (245)
335 PRK09554 feoB ferrous iron tra 99.8 7.6E-19 1.7E-23 181.5 18.3 156 2-162 3-167 (772)
336 cd04168 TetM_like Tet(M)-like 99.8 8.8E-19 1.9E-23 157.8 16.5 159 184-354 1-236 (237)
337 KOG1489|consensus 99.8 5.3E-19 1.1E-23 157.4 14.3 160 182-351 196-365 (366)
338 cd04147 Ras_dva Ras-dva subfam 99.8 1.1E-18 2.5E-23 153.8 16.3 151 4-165 1-165 (198)
339 cd00876 Ras Ras family. The R 99.8 1.8E-18 3.9E-23 146.9 17.0 146 4-161 1-159 (160)
340 smart00176 RAN Ran (Ras-relate 99.8 1.3E-18 2.8E-23 152.7 15.9 146 8-165 1-156 (200)
341 cd01852 AIG1 AIG1 (avrRpt2-ind 99.8 1.5E-18 3.2E-23 152.7 16.3 173 183-357 1-188 (196)
342 TIGR00487 IF-2 translation ini 99.8 1.2E-18 2.6E-23 175.1 17.7 149 2-160 87-247 (587)
343 PF00071 Ras: Ras family; Int 99.8 4.5E-19 9.8E-24 151.1 12.6 155 184-353 1-161 (162)
344 PLN03108 Rab family protein; P 99.8 3E-18 6.4E-23 152.4 18.1 151 3-164 7-169 (210)
345 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 1.5E-18 3.3E-23 154.4 16.2 149 3-162 2-175 (222)
346 TIGR00491 aIF-2 translation in 99.8 1.5E-18 3.2E-23 174.1 17.9 159 181-352 3-215 (590)
347 cd01884 EF_Tu EF-Tu subfamily. 99.8 2.1E-18 4.5E-23 150.7 16.5 139 4-151 4-171 (195)
348 cd00154 Rab Rab family. Rab G 99.8 2.9E-18 6.2E-23 145.1 17.0 147 3-159 1-158 (159)
349 cd01870 RhoA_like RhoA-like su 99.8 1.5E-18 3.2E-23 150.0 15.5 149 2-161 1-173 (175)
350 KOG0083|consensus 99.8 2.8E-20 6.1E-25 143.7 4.1 160 187-360 2-167 (192)
351 PRK12735 elongation factor Tu; 99.8 1.7E-18 3.7E-23 168.0 17.5 150 180-340 10-180 (396)
352 cd01893 Miro1 Miro1 subfamily. 99.8 2.1E-18 4.6E-23 147.7 16.1 148 4-163 2-164 (166)
353 PRK05306 infB translation init 99.8 1.6E-18 3.4E-23 178.2 17.9 149 2-160 290-449 (787)
354 cd01896 DRG The developmentall 99.8 2.9E-18 6.3E-23 154.3 17.5 154 4-162 2-225 (233)
355 KOG0086|consensus 99.8 1.2E-18 2.5E-23 138.0 12.8 150 2-164 9-172 (214)
356 PF10662 PduV-EutP: Ethanolami 99.8 7.6E-19 1.7E-23 142.2 12.1 137 2-159 1-142 (143)
357 cd04148 RGK RGK subfamily. Th 99.8 3.7E-18 8.1E-23 152.8 17.8 149 3-164 1-164 (221)
358 PRK12289 GTPase RsgA; Reviewed 99.8 1.5E-18 3.2E-23 163.8 15.8 146 74-245 81-239 (352)
359 PLN03127 Elongation factor Tu; 99.8 3.5E-18 7.6E-23 167.1 18.9 162 180-352 59-251 (447)
360 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 2.1E-18 4.6E-23 147.3 15.4 142 5-159 2-162 (164)
361 TIGR00485 EF-Tu translation el 99.8 3E-18 6.6E-23 166.4 18.4 149 180-339 10-179 (394)
362 TIGR01393 lepA GTP-binding pro 99.8 2.6E-18 5.7E-23 173.6 18.4 155 2-165 3-182 (595)
363 KOG0395|consensus 99.8 1.2E-18 2.6E-23 151.7 13.7 158 181-354 2-166 (196)
364 cd04135 Tc10 TC10 subfamily. 99.8 1.7E-18 3.6E-23 149.5 14.6 148 3-161 1-172 (174)
365 cd01852 AIG1 AIG1 (avrRpt2-ind 99.8 3.2E-18 7E-23 150.6 16.5 160 4-165 2-186 (196)
366 cd04161 Arl2l1_Arl13_like Arl2 99.8 3.5E-18 7.5E-23 146.5 16.0 144 4-160 1-166 (167)
367 cd00157 Rho Rho (Ras homology) 99.8 1.9E-18 4.2E-23 148.6 14.3 146 4-160 2-170 (171)
368 cd01886 EF-G Elongation factor 99.8 6.6E-17 1.4E-21 148.3 25.2 113 4-125 1-130 (270)
369 KOG0081|consensus 99.8 1.9E-19 4E-24 143.5 7.2 157 183-354 10-182 (219)
370 cd01888 eIF2_gamma eIF2-gamma 99.8 3.5E-18 7.6E-23 151.0 16.2 153 4-165 2-201 (203)
371 cd04155 Arl3 Arl3 subfamily. 99.8 6.4E-18 1.4E-22 145.7 17.2 145 3-160 15-172 (173)
372 cd04137 RheB Rheb (Ras Homolog 99.8 5E-18 1.1E-22 147.4 16.5 151 3-165 2-165 (180)
373 PRK00049 elongation factor Tu; 99.8 4.7E-18 1E-22 164.8 18.0 150 180-340 10-180 (396)
374 TIGR03680 eif2g_arch translati 99.8 4.8E-18 1E-22 165.4 18.0 162 181-353 3-196 (406)
375 TIGR00231 small_GTP small GTP- 99.8 1.8E-18 3.9E-23 146.1 13.2 146 3-159 2-160 (161)
376 COG1084 Predicted GTPase [Gene 99.8 9.1E-18 2E-22 151.0 18.0 166 179-353 165-336 (346)
377 cd01886 EF-G Elongation factor 99.8 3.1E-18 6.8E-23 157.0 15.1 143 184-338 1-160 (270)
378 TIGR01394 TypA_BipA GTP-bindin 99.8 6.6E-18 1.4E-22 170.2 18.7 161 183-355 2-193 (594)
379 cd04103 Centaurin_gamma Centau 99.8 8.9E-18 1.9E-22 142.4 16.6 141 4-161 2-157 (158)
380 CHL00189 infB translation init 99.8 5.4E-18 1.2E-22 172.6 18.0 149 3-161 245-408 (742)
381 cd00880 Era_like Era (E. coli 99.8 1.3E-17 2.7E-22 141.1 17.4 153 7-161 1-162 (163)
382 TIGR00483 EF-1_alpha translati 99.8 3.7E-18 7.9E-23 167.8 16.0 156 180-346 5-200 (426)
383 PRK10218 GTP-binding protein; 99.8 9.2E-18 2E-22 168.9 18.9 162 181-354 4-196 (607)
384 TIGR00437 feoB ferrous iron tr 99.8 4.6E-18 1E-22 171.9 16.8 149 9-162 1-154 (591)
385 cd04159 Arl10_like Arl10-like 99.8 2.1E-17 4.5E-22 139.9 18.3 144 5-160 2-158 (159)
386 PRK04000 translation initiatio 99.8 9.3E-18 2E-22 163.2 18.2 163 181-354 8-202 (411)
387 TIGR00475 selB selenocysteine- 99.8 4.8E-18 1.1E-22 171.6 16.7 151 4-163 2-166 (581)
388 PRK05433 GTP-binding protein L 99.8 1.3E-17 2.9E-22 168.7 19.9 162 181-355 6-186 (600)
389 PF00025 Arf: ADP-ribosylation 99.8 7.9E-18 1.7E-22 145.1 15.6 158 180-352 12-175 (175)
390 PRK09866 hypothetical protein; 99.8 7E-17 1.5E-21 158.1 23.3 116 230-351 230-351 (741)
391 COG1163 DRG Predicted GTPase [ 99.8 2.7E-18 5.8E-23 153.7 12.2 158 180-353 61-289 (365)
392 cd01873 RhoBTB RhoBTB subfamil 99.8 1E-17 2.2E-22 146.7 15.7 147 3-161 3-194 (195)
393 PLN03126 Elongation factor Tu; 99.8 1.6E-17 3.4E-22 163.3 18.9 151 180-341 79-250 (478)
394 PRK12317 elongation factor 1-a 99.8 6.1E-18 1.3E-22 166.3 15.6 141 4-153 8-195 (425)
395 COG2262 HflX GTPases [General 99.8 2.4E-17 5.3E-22 152.8 18.0 164 180-355 190-358 (411)
396 PRK05433 GTP-binding protein L 99.8 2.1E-17 4.5E-22 167.3 19.0 154 3-165 8-186 (600)
397 TIGR02034 CysN sulfate adenyly 99.8 7.8E-18 1.7E-22 163.8 15.2 151 183-344 1-188 (406)
398 cd04169 RF3 RF3 subfamily. Pe 99.8 3.8E-17 8.2E-22 149.7 18.8 114 183-307 3-137 (267)
399 PRK05124 cysN sulfate adenylyl 99.8 7.7E-18 1.7E-22 166.3 14.9 155 180-345 25-217 (474)
400 cd04129 Rho2 Rho2 subfamily. 99.8 2E-17 4.3E-22 144.5 15.6 152 3-165 2-175 (187)
401 PRK10512 selenocysteinyl-tRNA- 99.8 2.8E-17 6E-22 166.6 18.8 152 4-164 2-167 (614)
402 TIGR01394 TypA_BipA GTP-bindin 99.8 2.9E-17 6.3E-22 165.6 18.6 155 2-165 1-193 (594)
403 PTZ00132 GTP-binding nuclear p 99.8 4E-17 8.7E-22 145.9 17.4 160 180-356 7-171 (215)
404 PRK04004 translation initiatio 99.8 3.8E-17 8.3E-22 164.7 19.0 158 181-351 5-216 (586)
405 PF00071 Ras: Ras family; Int 99.7 2.5E-17 5.3E-22 140.4 14.3 147 4-162 1-160 (162)
406 cd04104 p47_IIGP_like p47 (47- 99.7 4.4E-17 9.6E-22 143.3 16.2 165 182-356 1-187 (197)
407 cd04168 TetM_like Tet(M)-like 99.7 5.2E-17 1.1E-21 146.3 17.0 113 4-125 1-130 (237)
408 PRK10218 GTP-binding protein; 99.7 5.6E-17 1.2E-21 163.3 18.7 155 2-165 5-197 (607)
409 cd04167 Snu114p Snu114p subfam 99.7 3.2E-17 7E-22 146.1 15.2 148 184-342 2-192 (213)
410 PRK05506 bifunctional sulfate 99.7 2.1E-17 4.6E-22 169.8 15.7 153 181-344 23-212 (632)
411 TIGR00491 aIF-2 translation in 99.7 4.9E-17 1.1E-21 163.2 17.6 148 2-160 4-213 (590)
412 PTZ00141 elongation factor 1- 99.7 3.6E-17 7.8E-22 160.3 16.3 152 181-343 6-203 (446)
413 cd01876 YihA_EngB The YihA (En 99.7 1E-16 2.3E-21 137.1 17.2 155 4-161 1-169 (170)
414 cd01885 EF2 EF2 (for archaea a 99.7 8.3E-17 1.8E-21 143.0 16.9 112 184-306 2-138 (222)
415 PRK12288 GTPase RsgA; Reviewed 99.7 2.8E-17 6E-22 155.2 14.7 140 80-245 118-272 (347)
416 KOG1707|consensus 99.7 3.3E-16 7.2E-21 150.1 21.7 143 4-160 11-172 (625)
417 COG0536 Obg Predicted GTPase [ 99.7 5.2E-17 1.1E-21 146.7 15.3 165 184-356 161-336 (369)
418 COG1163 DRG Predicted GTPase [ 99.7 1.4E-17 3.1E-22 149.0 11.3 155 4-164 65-290 (365)
419 KOG0073|consensus 99.7 1.6E-16 3.6E-21 127.8 16.2 158 181-354 15-179 (185)
420 KOG0462|consensus 99.7 5.7E-17 1.2E-21 153.9 15.6 164 180-356 58-238 (650)
421 KOG1489|consensus 99.7 2.5E-17 5.4E-22 146.8 12.4 155 3-160 197-364 (366)
422 COG0532 InfB Translation initi 99.7 8.3E-17 1.8E-21 154.1 16.8 162 181-355 4-172 (509)
423 PRK13796 GTPase YqeH; Provisio 99.7 7.6E-17 1.7E-21 154.3 16.6 145 76-243 62-223 (365)
424 PRK12736 elongation factor Tu; 99.7 1.1E-16 2.4E-21 155.3 17.7 153 3-164 13-202 (394)
425 cd04170 EF-G_bact Elongation f 99.7 1.5E-16 3.4E-21 146.8 17.8 113 184-307 1-130 (268)
426 cd04102 RabL3 RabL3 (Rab-like3 99.7 9E-17 1.9E-21 141.0 15.1 144 183-339 1-176 (202)
427 KOG0088|consensus 99.7 1.9E-18 4E-23 137.7 3.9 153 2-165 13-177 (218)
428 COG3596 Predicted GTPase [Gene 99.7 1.5E-16 3.2E-21 139.9 16.1 179 180-364 37-233 (296)
429 COG3596 Predicted GTPase [Gene 99.7 5.7E-17 1.2E-21 142.6 13.4 162 4-167 41-226 (296)
430 COG1161 Predicted GTPases [Gen 99.7 4.5E-17 9.7E-22 152.9 13.8 166 71-245 23-192 (322)
431 KOG0091|consensus 99.7 5.4E-17 1.2E-21 130.2 11.9 149 3-164 9-174 (213)
432 CHL00071 tufA elongation facto 99.7 1.3E-16 2.9E-21 155.5 17.3 151 4-163 14-211 (409)
433 KOG0097|consensus 99.7 8.3E-17 1.8E-21 125.8 12.6 159 181-355 10-175 (215)
434 cd00882 Ras_like_GTPase Ras-li 99.7 4.2E-17 9.2E-22 136.4 11.9 149 187-349 1-156 (157)
435 cd01899 Ygr210 Ygr210 subfamil 99.7 2E-16 4.3E-21 147.7 17.5 161 185-356 1-272 (318)
436 cd04165 GTPBP1_like GTPBP1-lik 99.7 2.5E-16 5.4E-21 140.6 17.2 148 4-160 1-220 (224)
437 PRK00098 GTPase RsgA; Reviewed 99.7 1.7E-17 3.7E-22 154.7 9.9 140 79-244 77-230 (298)
438 cd01899 Ygr210 Ygr210 subfamil 99.7 2.6E-16 5.7E-21 146.9 17.5 160 5-167 1-273 (318)
439 TIGR00484 EF-G translation elo 99.7 1.2E-16 2.6E-21 165.7 16.7 146 181-338 9-171 (689)
440 PTZ00132 GTP-binding nuclear p 99.7 7.3E-16 1.6E-20 137.7 18.7 153 2-165 9-170 (215)
441 PRK00007 elongation factor G; 99.7 2.2E-16 4.8E-21 163.5 16.9 146 181-338 9-171 (693)
442 PRK00741 prfC peptide chain re 99.7 4.4E-16 9.5E-21 155.1 18.3 117 180-307 8-145 (526)
443 PTZ00327 eukaryotic translatio 99.7 4.8E-16 1E-20 151.8 17.5 164 180-354 32-234 (460)
444 PRK12735 elongation factor Tu; 99.7 4.1E-16 8.9E-21 151.4 16.9 151 4-163 14-203 (396)
445 TIGR00483 EF-1_alpha translati 99.7 3E-16 6.6E-21 154.2 15.9 142 3-153 8-197 (426)
446 PLN03127 Elongation factor Tu; 99.7 9.6E-16 2.1E-20 150.0 19.0 153 3-164 62-253 (447)
447 PF10662 PduV-EutP: Ethanolami 99.7 2.6E-16 5.6E-21 127.5 12.4 139 184-349 3-142 (143)
448 cd01854 YjeQ_engC YjeQ/EngC. 99.7 1.7E-16 3.6E-21 147.3 12.9 139 80-244 76-227 (287)
449 PRK12739 elongation factor G; 99.7 4.1E-16 8.9E-21 161.6 17.2 146 181-338 7-169 (691)
450 KOG0395|consensus 99.7 4.1E-16 8.9E-21 135.8 14.5 150 3-164 4-166 (196)
451 PF00025 Arf: ADP-ribosylation 99.7 1.2E-16 2.7E-21 137.7 10.8 146 3-161 15-174 (175)
452 cd01883 EF1_alpha Eukaryotic e 99.7 2.1E-16 4.6E-21 141.3 12.7 140 4-152 1-194 (219)
453 TIGR03680 eif2g_arch translati 99.7 5.1E-16 1.1E-20 151.2 16.3 153 3-164 5-197 (406)
454 KOG0097|consensus 99.7 4.4E-16 9.5E-21 121.8 12.6 148 2-163 11-173 (215)
455 TIGR02034 CysN sulfate adenyly 99.7 3.4E-16 7.4E-21 152.3 15.0 141 4-153 2-187 (406)
456 KOG1145|consensus 99.7 8.3E-16 1.8E-20 146.0 17.0 162 179-353 150-316 (683)
457 KOG1490|consensus 99.7 3.7E-16 8E-21 146.9 14.1 191 179-372 165-363 (620)
458 PRK05124 cysN sulfate adenylyl 99.7 5.7E-16 1.2E-20 153.1 16.3 143 3-154 28-216 (474)
459 PLN00043 elongation factor 1-a 99.7 6.5E-16 1.4E-20 151.4 16.4 153 180-343 5-203 (447)
460 TIGR00485 EF-Tu translation el 99.7 9.1E-16 2E-20 149.1 17.2 152 3-163 13-201 (394)
461 COG2229 Predicted GTPase [Gene 99.7 2.2E-15 4.8E-20 124.5 16.7 157 181-351 9-176 (187)
462 PRK00049 elongation factor Tu; 99.7 9E-16 1.9E-20 148.9 17.0 151 4-163 14-203 (396)
463 PRK04000 translation initiatio 99.7 8.4E-16 1.8E-20 149.6 16.5 152 4-164 11-202 (411)
464 PRK05506 bifunctional sulfate 99.7 6.6E-16 1.4E-20 158.8 16.1 141 4-153 26-211 (632)
465 PRK09602 translation-associate 99.7 1.4E-15 3.1E-20 146.2 17.3 163 3-168 2-276 (396)
466 PRK13351 elongation factor G; 99.7 7.5E-16 1.6E-20 160.1 16.7 117 181-308 7-140 (687)
467 PRK04004 translation initiatio 99.7 1.1E-15 2.4E-20 154.2 16.6 147 3-160 7-215 (586)
468 PLN00023 GTP-binding protein; 99.7 1.1E-15 2.4E-20 140.5 14.9 117 180-308 19-166 (334)
469 cd04169 RF3 RF3 subfamily. Pe 99.7 1.4E-15 3.1E-20 139.3 15.6 116 2-126 2-138 (267)
470 PRK09602 translation-associate 99.7 2.4E-15 5.1E-20 144.7 17.8 167 183-361 2-279 (396)
471 COG1100 GTPase SAR1 and relate 99.7 3.1E-15 6.8E-20 134.1 17.1 162 182-355 5-187 (219)
472 cd04167 Snu114p Snu114p subfam 99.7 1.3E-15 2.8E-20 135.8 14.4 152 3-163 1-211 (213)
473 cd04104 p47_IIGP_like p47 (47- 99.7 1.4E-15 3E-20 133.8 14.0 157 3-167 2-188 (197)
474 PRK12739 elongation factor G; 99.7 1.9E-15 4.2E-20 156.6 17.4 115 3-126 9-140 (691)
475 cd04105 SR_beta Signal recogni 99.7 2.3E-15 5E-20 132.9 15.3 110 184-308 2-124 (203)
476 KOG4252|consensus 99.7 4.8E-17 1E-21 132.4 4.2 160 180-355 18-183 (246)
477 TIGR00503 prfC peptide chain r 99.7 4.7E-15 1E-19 147.8 19.2 116 180-306 9-145 (527)
478 KOG0393|consensus 99.7 2E-16 4.2E-21 134.6 7.7 163 181-356 3-182 (198)
479 KOG0075|consensus 99.7 1.4E-15 3.1E-20 119.9 11.9 160 181-354 19-183 (186)
480 cd00882 Ras_like_GTPase Ras-li 99.7 1.9E-15 4.1E-20 126.4 13.6 143 7-159 1-156 (157)
481 PLN03126 Elongation factor Tu; 99.7 3.7E-15 7.9E-20 146.7 17.6 137 4-149 83-248 (478)
482 PF04548 AIG1: AIG1 family; I 99.7 5.4E-15 1.2E-19 131.4 17.1 180 183-364 1-197 (212)
483 cd01882 BMS1 Bms1. Bms1 is an 99.7 4.6E-15 9.9E-20 132.9 16.8 143 180-341 37-184 (225)
484 PRK00007 elongation factor G; 99.7 2.9E-15 6.2E-20 155.2 17.7 114 3-125 11-141 (693)
485 KOG0462|consensus 99.7 8.4E-16 1.8E-20 146.1 12.3 155 3-166 61-238 (650)
486 KOG0081|consensus 99.7 1.8E-16 3.9E-21 126.5 6.5 148 4-164 11-182 (219)
487 cd04102 RabL3 RabL3 (Rab-like3 99.7 3.7E-15 7.9E-20 130.8 15.5 115 4-128 2-146 (202)
488 cd01850 CDC_Septin CDC/Septin. 99.7 6.7E-15 1.5E-19 135.5 17.7 152 182-335 4-184 (276)
489 KOG0073|consensus 99.6 1E-14 2.2E-19 117.5 16.2 147 3-163 17-178 (185)
490 COG0536 Obg Predicted GTPase [ 99.6 2.1E-15 4.6E-20 136.4 13.3 160 4-166 161-336 (369)
491 COG0532 InfB Translation initi 99.6 2.7E-15 5.9E-20 143.8 14.5 148 2-159 5-166 (509)
492 TIGR00484 EF-G translation elo 99.6 3.7E-15 8.1E-20 154.6 16.2 116 3-127 11-143 (689)
493 KOG0083|consensus 99.6 2.2E-16 4.8E-21 122.3 4.9 147 6-164 1-161 (192)
494 cd01885 EF2 EF2 (for archaea a 99.6 3.3E-15 7.2E-20 132.7 13.1 113 3-124 1-138 (222)
495 COG0481 LepA Membrane GTPase L 99.6 2.3E-15 5E-20 140.8 12.2 163 181-356 8-189 (603)
496 PRK00741 prfC peptide chain re 99.6 1.9E-14 4.2E-19 143.4 19.2 115 2-125 10-145 (526)
497 cd01853 Toc34_like Toc34-like 99.6 1.6E-14 3.4E-19 130.6 16.5 126 3-128 32-166 (249)
498 COG2229 Predicted GTPase [Gene 99.6 2.2E-14 4.8E-19 118.6 15.9 150 3-161 11-176 (187)
499 KOG0075|consensus 99.6 6E-15 1.3E-19 116.4 11.7 146 4-161 22-180 (186)
500 COG2895 CysN GTPases - Sulfate 99.6 5.1E-15 1.1E-19 133.9 12.7 194 181-398 5-235 (431)
No 1
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=5.4e-89 Score=635.44 Aligned_cols=413 Identities=46% Similarity=0.741 Sum_probs=388.3
Q ss_pred CC-CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 1 MK-PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 1 ~~-~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
|. |.|+|+|+||||||||+|+|++++.++++++||+|+|..++.+.|.++.+.+|||+|+++..++.+.+.+..++..+
T Consensus 1 m~~~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A 80 (444)
T COG1160 1 MSTPVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIA 80 (444)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence 66 89999999999999999999999999999999999999999999999999999999999777678999999999999
Q ss_pred HHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc-hhHHhcCCCCeEEEeeccCCCHHHHHHHH
Q psy17089 80 IIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-LDFYELGIGNPHIISALYGNGIKNFLENI 158 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~vSa~~~~~v~~l~~~i 158 (419)
+..||+++||+|+..+.++.|..++++|++.++|+++|+||+|....+.. .+|+.+|+++++++||.||.|+.+|++.+
T Consensus 81 i~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v 160 (444)
T COG1160 81 IEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAV 160 (444)
T ss_pred HHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHHHHH
Confidence 99999999999999999999999999999888999999999999865555 89999999999999999999999999999
Q ss_pred HHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCC
Q psy17089 159 LTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTA 238 (419)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtp 238 (419)
.+.++ .+.. ...+....+++||++|+||||||||+|+|+++++..+++.+|||+|.+...++++++.+.++||+
T Consensus 161 ~~~l~-~~e~-----~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTA 234 (444)
T COG1160 161 LELLP-PDEE-----EEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTA 234 (444)
T ss_pred HhhcC-Cccc-----ccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECC
Confidence 99986 3210 01111136799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCCh--hhHHHHHH
Q psy17089 239 GIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIH--NQRKIIKN 316 (419)
Q Consensus 239 G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~--~~~~~~~~ 316 (419)
|+++.....+.+|.|++.+++.++..||++++|+|++.+.+.+|.++..++.+.++++++|+||||+++. ...+....
T Consensus 235 GiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~ 314 (444)
T COG1160 235 GIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKK 314 (444)
T ss_pred CCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876 55677888
Q ss_pred HHHHHcCCCCCCcEEEEeccCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCCCCCCCCceeEEEEecCCCC
Q psy17089 317 NIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIHLSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKN 396 (419)
Q Consensus 317 ~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 396 (419)
.+...+.+..+.|++++||++|.|+.++|+.+.+.+..+..+++++.||++|+.++..+|||...|++++++|++|..++
T Consensus 315 ~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~a~~~~pP~~~~G~r~ki~Ya~q~~~~ 394 (444)
T COG1160 315 KLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRRISTSLLNRVLEDAVAKHPPPVRYGRRLKIKYATQVSTN 394 (444)
T ss_pred HHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCccCCceEEEEEEecCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999877787999999999999999
Q ss_pred CCEEEEEecCCCCCChhhhcccC
Q psy17089 397 PPIIVIHGNRLKYIGNDYKRYLE 419 (419)
Q Consensus 397 ~p~~~~~~~~~~~~~~~y~~~~~ 419 (419)
||+|++|||+|+.++.+|+|||+
T Consensus 395 PP~fvlf~N~~~~~~~sY~RyL~ 417 (444)
T COG1160 395 PPTFVLFGNRPKALHFSYKRYLE 417 (444)
T ss_pred CCEEEEEecchhhCchHHHHHHH
Confidence 99999999999999999999985
No 2
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=100.00 E-value=4.5e-72 Score=552.28 Aligned_cols=408 Identities=48% Similarity=0.792 Sum_probs=368.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhC
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 83 (419)
+|+|+|++|||||||+|+|++...+++++.+++|+++....+.+++..+.+|||||+.... +.+.+.+..++..++.++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~-~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDD-DGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcc-hhHHHHHHHHHHHHHhhC
Confidence 5899999999999999999998888889999999999999999999999999999986433 456677888889999999
Q ss_pred CEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc-hhHHhcCCCCeEEEeeccCCCHHHHHHHHHHhc
Q psy17089 84 DIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-LDFYELGIGNPHIISALYGNGIKNFLENILTIE 162 (419)
Q Consensus 84 d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~vSa~~~~~v~~l~~~i~~~~ 162 (419)
|+++||+|+..+.+..+.++.+++++.++|+++|+||+|+...... .+++.+++.+++++||++|.|++++++.+.+.+
T Consensus 80 d~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELL 159 (429)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999876554 667788888999999999999999999999888
Q ss_pred CCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCC
Q psy17089 163 LPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242 (419)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~ 242 (419)
++.... .......++|+++|.+|+|||||+|+|++.+...+++.+|+|.+.....+..++..+.+|||||+.+
T Consensus 160 ~~~~~~-------~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~ 232 (429)
T TIGR03594 160 PEEEEE-------EEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRR 232 (429)
T ss_pred Cccccc-------ccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccc
Confidence 764320 1112356899999999999999999999998888899999999999888888889999999999988
Q ss_pred CCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCC-ChhhHHHHHHHHHHH
Q psy17089 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSI-IHNQRKIIKNNIKKK 321 (419)
Q Consensus 243 ~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~-~~~~~~~~~~~~~~~ 321 (419)
.....+.+|.+...++..+++.||++++|+|++++.+.++.+++..+.+.++|+++|+||||+. +........+.+...
T Consensus 233 ~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~ 312 (429)
T TIGR03594 233 KGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRK 312 (429)
T ss_pred cccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHh
Confidence 8777777888888888889999999999999999999999999999988999999999999998 444556667777777
Q ss_pred cCCCCCCcEEEEeccCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCCCCCCCCceeEEEEecCCCCCCEEE
Q psy17089 322 LNFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIHLSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKNPPIIV 401 (419)
Q Consensus 322 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~q~~~~~p~~~ 401 (419)
+....+++++++||++|.|++++|+.+.+.+..+..+++++.+|++|++++..+++|..++++.+++|++|++.+||+|+
T Consensus 313 ~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~p~~~~~~~k~~y~~q~~~~pp~~~ 392 (429)
T TIGR03594 313 LPFLDFAPIVFISALTGQGVDKLLDAIDEVYENANRRISTSKLNRVLEEAVAAHPPPLVNGRRLKIKYATQVGTNPPTFV 392 (429)
T ss_pred cccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCCCCCCCceeeEEEEECCCCCCCEEE
Confidence 77777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCChhhhcccC
Q psy17089 402 IHGNRLKYIGNDYKRYLE 419 (419)
Q Consensus 402 ~~~~~~~~~~~~y~~~~~ 419 (419)
+|+|+|+.++++|+|||+
T Consensus 393 ~~~n~~~~~~~~y~~~l~ 410 (429)
T TIGR03594 393 LFGNRPELLPFSYKRYLE 410 (429)
T ss_pred EEEcCcccCCHHHHHHHH
Confidence 999999999999999985
No 3
>PRK03003 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=4.2e-72 Score=554.21 Aligned_cols=408 Identities=34% Similarity=0.590 Sum_probs=353.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
+|+|+|+|++|||||||+|+|++...+.+.+.+++|++.....+.+++..+.+|||||++... ..+.+.+..++..++.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~-~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA-KGLQASVAEQAEVAMR 116 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc-hhHHHHHHHHHHHHHH
Confidence 489999999999999999999998777788899999999999999999999999999987332 3355567777888999
Q ss_pred hCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc-hhHHhcCCCCeEEEeeccCCCHHHHHHHHHH
Q psy17089 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-LDFYELGIGNPHIISALYGNGIKNFLENILT 160 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~vSa~~~~~v~~l~~~i~~ 160 (419)
+||+++||+|++++.+..+..+.++++..++|+++|+||+|+...... .+++.++++.++++||++|.|++++++.+.+
T Consensus 117 ~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~gi~eL~~~i~~ 196 (472)
T PRK03003 117 TADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHGRGVGDLLDAVLA 196 (472)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCCCCcHHHHHHHHh
Confidence 999999999999988888888999999889999999999998754333 5566778878899999999999999999998
Q ss_pred hcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCC
Q psy17089 161 IELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240 (419)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~ 240 (419)
.+++... . .......++|+++|.+|||||||+|+|++.+...+++.+|+|.+.....+.+++..+.+|||||+
T Consensus 197 ~l~~~~~-----~--~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~ 269 (472)
T PRK03003 197 ALPEVPR-----V--GSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGL 269 (472)
T ss_pred hcccccc-----c--ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCc
Confidence 8876321 0 11113568999999999999999999999887778899999999998888899999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHH
Q psy17089 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKK 320 (419)
Q Consensus 241 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~ 320 (419)
.+........+.|...++..+++.||++++|+|++++.+.++.+++..+.+.++|+++|+||+|+.+.........++..
T Consensus 270 ~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~ 349 (472)
T PRK03003 270 RRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDR 349 (472)
T ss_pred cccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHH
Confidence 66544333456676666667889999999999999999999999999888899999999999999765443444455555
Q ss_pred HcCCCCCCcEEEEeccCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCCCCCCCCceeEEEEecCCCCCCEE
Q psy17089 321 KLNFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIHLSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKNPPII 400 (419)
Q Consensus 321 ~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~q~~~~~p~~ 400 (419)
.+....+++++++||++|.|++++|+.+.+.+..+..+++++.+|+++++++..+++|..+|++++++|++|+.++||+|
T Consensus 350 ~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~~~~~~~~~~~p~~~g~~~k~~y~~q~~~~pp~f 429 (472)
T PRK03003 350 ELAQVPWAPRVNISAKTGRAVDKLVPALETALESWDTRIPTGRLNAWLGELVAATPPPVRGGKQPRILFATQASTRPPTF 429 (472)
T ss_pred hcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCCCCeeeeEEEEECCCCCCCEE
Confidence 66666678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCChhhhcccC
Q psy17089 401 VIHGNRLKYIGNDYKRYLE 419 (419)
Q Consensus 401 ~~~~~~~~~~~~~y~~~~~ 419 (419)
++|+| +.++++|+|||+
T Consensus 430 ~~~~~--~~~~~~y~~~l~ 446 (472)
T PRK03003 430 VLFTT--GFLEAGYRRFLE 446 (472)
T ss_pred EEEeC--CCCChHHHHHHH
Confidence 99977 689999999985
No 4
>PRK00093 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=1.3e-70 Score=542.31 Aligned_cols=409 Identities=48% Similarity=0.769 Sum_probs=366.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
+|+|+|+|++|||||||+|+|++...+.+.+.+++|++.....+.+++..+.+|||||+.... +.+.+.+..+...++.
T Consensus 1 ~~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~-~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 1 KPVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDD-DGFEKQIREQAELAIE 79 (435)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcc-hhHHHHHHHHHHHHHH
Confidence 379999999999999999999998877888999999999999999999999999999998632 2355667778888999
Q ss_pred hCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc-hhHHhcCCCCeEEEeeccCCCHHHHHHHHHH
Q psy17089 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-LDFYELGIGNPHIISALYGNGIKNFLENILT 160 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~vSa~~~~~v~~l~~~i~~ 160 (419)
++|+++||+|+..+.+..+.++.+++++.++|+++|+||+|+...... .+++.+++..++++||++|.|++++++.+..
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 999999999999988999999999999999999999999997654333 6677788878999999999999999999987
Q ss_pred hcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCC
Q psy17089 161 IELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240 (419)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~ 240 (419)
..+..+. .......++|+++|.+|+|||||+|+|++.+...+++.+|+|++.....+..++..+.+|||||+
T Consensus 160 ~~~~~~~--------~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~ 231 (435)
T PRK00093 160 ELPEEEE--------EDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGI 231 (435)
T ss_pred hCCcccc--------ccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCC
Confidence 5433211 01123579999999999999999999999988889999999999998888888999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHH
Q psy17089 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKK 320 (419)
Q Consensus 241 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~ 320 (419)
.+.....+.+|.+...+++.+++.+|++++|+|++++.+.++..++..+.+.++|+++|+||||+.+.....+..+.+..
T Consensus 232 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~ 311 (435)
T PRK00093 232 RRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRR 311 (435)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHH
Confidence 88877777788888888888999999999999999999999999999999899999999999999866666667777777
Q ss_pred HcCCCCCCcEEEEeccCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCCCCCCCCceeEEEEecCCCCCCEE
Q psy17089 321 KLNFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIHLSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKNPPII 400 (419)
Q Consensus 321 ~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~q~~~~~p~~ 400 (419)
.+....+++++++||++|.|++++++.+.+.+..+..+++++.+++++++++..+++|..++++.+++|++|+..+||+|
T Consensus 312 ~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~p~~~~~~~k~~~~~q~~~~pp~f 391 (435)
T PRK00093 312 RLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENANRRISTSVLNRVLEEAVERHPPPLVKGRRLKIKYATQVGTNPPTF 391 (435)
T ss_pred hcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHHHcCCCCCCCCeeeeEEEEEcCCCCCCEE
Confidence 77777789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCChhhhcccC
Q psy17089 401 VIHGNRLKYIGNDYKRYLE 419 (419)
Q Consensus 401 ~~~~~~~~~~~~~y~~~~~ 419 (419)
++|+|+++.++++|+|||+
T Consensus 392 ~~~~n~~~~~~~~y~~~l~ 410 (435)
T PRK00093 392 VLFVNDPELLPFSYKRYLE 410 (435)
T ss_pred EEEeCCcccCCHHHHHHHH
Confidence 9999999999999999985
No 5
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=100.00 E-value=2.8e-68 Score=549.85 Aligned_cols=410 Identities=33% Similarity=0.568 Sum_probs=356.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
.++|+|+|++|||||||+|+|++...+++++.+|+|++.......+++..+.+|||||+.... +.+...+..+...++.
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~-~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV-EGIDSAIASQAQIAVS 353 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCC-ccHHHHHHHHHHHHHH
Confidence 478999999999999999999998878889999999999999999999999999999987432 3456677788888999
Q ss_pred hCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc-hhHHhcCCCCeEEEeeccCCCHHHHHHHHHH
Q psy17089 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-LDFYELGIGNPHIISALYGNGIKNFLENILT 160 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~vSa~~~~~v~~l~~~i~~ 160 (419)
.+|+++||+|+++++...+..+.++++..++|+++|+||+|+...... .+++.+++..++++||++|.|++++++.|.+
T Consensus 354 ~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~GI~eLl~~i~~ 433 (712)
T PRK09518 354 LADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRGVGDLLDEALD 433 (712)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCCchHHHHHHHH
Confidence 999999999999988999989999999999999999999998764433 5667778878899999999999999999999
Q ss_pred hcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCC
Q psy17089 161 IELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240 (419)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~ 240 (419)
.+++.+. ..........++|+++|.+|||||||+|+|++.+...+++++|+|.+.....+.+++..+.+|||||+
T Consensus 434 ~l~~~~~-----~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~ 508 (712)
T PRK09518 434 SLKVAEK-----TSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGI 508 (712)
T ss_pred hcccccc-----cccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCc
Confidence 8876321 00000012458999999999999999999999987778899999999998888899999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHH
Q psy17089 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKK 320 (419)
Q Consensus 241 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~ 320 (419)
.+........+.+...++..+++.+|++++|+|++++.+.++..++..+.+.++|+++|+||||+.+..........+..
T Consensus 509 ~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~ 588 (712)
T PRK09518 509 KRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKT 588 (712)
T ss_pred ccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHH
Confidence 76554444456666666777899999999999999999999999988888889999999999999865544445555666
Q ss_pred HcCCCCCCcEEEEeccCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCCCCCCCCceeEEEEecCCCCCCEE
Q psy17089 321 KLNFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIHLSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKNPPII 400 (419)
Q Consensus 321 ~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~q~~~~~p~~ 400 (419)
.+....+.+++++||++|.|+++|++.+.+.+..+..+++++.+|++++.++..+++|..+|++++++|++|+..+||+|
T Consensus 589 ~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~l~~~~~~~~~p~~~g~~~ki~y~~q~~~~Pp~f 668 (712)
T PRK09518 589 EFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQRIPTGKLNAFLGKIQAEHPHPLRGGKQPRILFATQASTRPPRF 668 (712)
T ss_pred hccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhhCCCCccCCeeeeEEEEECCCCCCCEE
Confidence 56666678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCChhhhcccC
Q psy17089 401 VIHGNRLKYIGNDYKRYLE 419 (419)
Q Consensus 401 ~~~~~~~~~~~~~y~~~~~ 419 (419)
++|+| +.++++|+|||+
T Consensus 669 ~~f~~--~~~~~~y~r~l~ 685 (712)
T PRK09518 669 VIFTT--GFLEHGYRRFLE 685 (712)
T ss_pred EEEcC--CCCChHHHHHHH
Confidence 99988 589999999985
No 6
>COG1159 Era GTPase [General function prediction only]
Probab=99.96 E-value=4.7e-28 Score=215.27 Aligned_cols=178 Identities=27% Similarity=0.407 Sum_probs=156.0
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+.-.|+++|+||||||||+|+|+|.+.+++++.+.||+..+.+.+..++.+++++||||+.... ..+.+++...+..
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk---~~l~~~m~~~a~~ 81 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK---HALGELMNKAARS 81 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc---hHHHHHHHHHHHH
Confidence 4467999999999999999999999999999999999999999999999999999999998886 5678888888999
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhh-HHHHHHHHHHHcCCCCCCcEEEEeccCCC
Q psy17089 261 SILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQ-RKIIKNNIKKKLNFLSFAMFNFISAIKLN 339 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 339 (419)
.+..+|++++|+|++++....+..+++.+++.+.|+++++||+|...+.. .....+.+... ..+..++++||++|.
T Consensus 82 sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~---~~f~~ivpiSA~~g~ 158 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKL---LPFKEIVPISALKGD 158 (298)
T ss_pred HhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhh---CCcceEEEeeccccC
Confidence 99999999999999999999999999999987899999999999987765 33344444433 344689999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCCHHHH
Q psy17089 340 NINSFMESINHVYDSSIIHLSTSRI 364 (419)
Q Consensus 340 gv~~l~~~i~~~~~~~~~~~~~~~l 364 (419)
|++.|.+.+.+.+++....++.+.+
T Consensus 159 n~~~L~~~i~~~Lpeg~~~yp~d~i 183 (298)
T COG1159 159 NVDTLLEIIKEYLPEGPWYYPEDQI 183 (298)
T ss_pred CHHHHHHHHHHhCCCCCCcCChhhc
Confidence 9999999999999998877776543
No 7
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.95 E-value=6.7e-28 Score=199.72 Aligned_cols=156 Identities=26% Similarity=0.368 Sum_probs=119.8
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (419)
++|+++|.||||||||+|+|+|.. ..++++||+|.+...+.+.+.+..+.++||||+....... .++...... -..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s--~ee~v~~~~-l~~ 76 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKS--EEERVARDY-LLS 76 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSS--HHHHHHHHH-HHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCC--cHHHHHHHH-Hhh
Confidence 589999999999999999999997 6789999999999999999999999999999987655322 122111212 224
Q ss_pred hhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHH
Q psy17089 263 LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNIN 342 (419)
Q Consensus 263 ~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 342 (419)
...|++++|+|+++. ++++.+..++.+.++|+++|+||+|+........-.+.+.+.+. +|++++||++|.|++
T Consensus 77 ~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg----~pvi~~sa~~~~g~~ 150 (156)
T PF02421_consen 77 EKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLG----VPVIPVSARTGEGID 150 (156)
T ss_dssp TSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT----S-EEEEBTTTTBTHH
T ss_pred cCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC----CCEEEEEeCCCcCHH
Confidence 689999999999974 67788889999999999999999998755433222344444443 799999999999999
Q ss_pred HHHHHH
Q psy17089 343 SFMESI 348 (419)
Q Consensus 343 ~l~~~i 348 (419)
+|++.|
T Consensus 151 ~L~~~I 156 (156)
T PF02421_consen 151 ELKDAI 156 (156)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 999875
No 8
>COG1159 Era GTPase [General function prediction only]
Probab=99.95 E-value=7.3e-27 Score=207.69 Aligned_cols=163 Identities=31% Similarity=0.471 Sum_probs=148.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhC
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 83 (419)
.|+|+|+||||||||+|+|+|.+.+++++.+.|||....+.+..++.++.++||||+... ...+.+.+...+...+.++
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p-k~~l~~~m~~~a~~sl~dv 86 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP-KHALGELMNKAARSALKDV 86 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc-chHHHHHHHHHHHHHhccC
Confidence 689999999999999999999999999999999999999999999999999999999866 3677788999999999999
Q ss_pred CEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCc-c---hhHH--hcCCCCeEEEeeccCCCHHHHHHH
Q psy17089 84 DIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSI-S---LDFY--ELGIGNPHIISALYGNGIKNFLEN 157 (419)
Q Consensus 84 d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~-~---~~~~--~~~~~~~~~vSa~~~~~v~~l~~~ 157 (419)
|+++||+|+.+++...+.++++.+++.+.|+++++||+|...... + .+++ ...+..++++||++|.|++.|.+.
T Consensus 87 Dlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~ 166 (298)
T COG1159 87 DLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEI 166 (298)
T ss_pred cEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHH
Confidence 999999999999999999999999987789999999999998887 2 2333 455678999999999999999999
Q ss_pred HHHhcCCcch
Q psy17089 158 ILTIELPYKK 167 (419)
Q Consensus 158 i~~~~~~~~~ 167 (419)
+...+|+++.
T Consensus 167 i~~~Lpeg~~ 176 (298)
T COG1159 167 IKEYLPEGPW 176 (298)
T ss_pred HHHhCCCCCC
Confidence 9999999865
No 9
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.95 E-value=1e-26 Score=218.69 Aligned_cols=164 Identities=34% Similarity=0.522 Sum_probs=144.9
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
..+++++++|+||||||||+|+|++.++++|++.||||+|.....+.++|.++.++||||+++.. +.+|+....++.
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~---d~VE~iGIeRs~ 291 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETD---DVVERIGIERAK 291 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCc---cHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999998765 788999999999
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCC
Q psy17089 260 KSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLN 339 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 339 (419)
..+..||++++|+|++.+.+..+..++. ....++|+++|.||+|+......... ......+++.+||++|.
T Consensus 292 ~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~--------~~~~~~~~i~iSa~t~~ 362 (454)
T COG0486 292 KAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELESE--------KLANGDAIISISAKTGE 362 (454)
T ss_pred HHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccccchh--------hccCCCceEEEEecCcc
Confidence 9999999999999999988888888777 55678999999999999876542211 11223478999999999
Q ss_pred CHHHHHHHHHHHHhhc
Q psy17089 340 NINSFMESINHVYDSS 355 (419)
Q Consensus 340 gv~~l~~~i~~~~~~~ 355 (419)
|++.|.+.|.+.+...
T Consensus 363 Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 363 GLDALREAIKQLFGKG 378 (454)
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999999999987765
No 10
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.95 E-value=1e-26 Score=218.02 Aligned_cols=162 Identities=33% Similarity=0.491 Sum_probs=140.8
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (419)
..||++|+||||||||+|+|++...+.++++||+|+|......++.+..+.++||+|+..... +.+++.+..+++.++
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~--~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE--DELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCc--hHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999975542 345666668888999
Q ss_pred hhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHH
Q psy17089 263 LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNIN 342 (419)
Q Consensus 263 ~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 342 (419)
..||++|+|+|+..+.+..|..+.++++..++|+++|+||+|-...+. . ...+..++.-.++++||.+|.|+.
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~------~-~~efyslG~g~~~~ISA~Hg~Gi~ 154 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEE------L-AYEFYSLGFGEPVPISAEHGRGIG 154 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhh------h-HHHHHhcCCCCceEeehhhccCHH
Confidence 999999999999999999999999999988899999999999752221 1 112233455688999999999999
Q ss_pred HHHHHHHHHHh
Q psy17089 343 SFMESINHVYD 353 (419)
Q Consensus 343 ~l~~~i~~~~~ 353 (419)
+|.+.+.+.++
T Consensus 155 dLld~v~~~l~ 165 (444)
T COG1160 155 DLLDAVLELLP 165 (444)
T ss_pred HHHHHHHhhcC
Confidence 99999999974
No 11
>KOG1191|consensus
Probab=99.95 E-value=1.2e-27 Score=223.88 Aligned_cols=173 Identities=28% Similarity=0.384 Sum_probs=137.9
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
..+++|+++|+||||||||+|+|+.++++++++.+|||+|.+...++.+|.++.|.||||+++. ..+.+|.....++.
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~--~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREE--SNDGIEALGIERAR 343 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccc--cCChhHHHhHHHHH
Confidence 4679999999999999999999999999999999999999999999999999999999999882 23567888888999
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHc------------CCcEEEEEEcccCCChh-hHHH-HHHHHHHHcCCC
Q psy17089 260 KSILEANVVILLLDAQQNISAQDINIANFIYES------------GRSLIVCVNKWDSIIHN-QRKI-IKNNIKKKLNFL 325 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~------------~~~~iiv~NK~Dl~~~~-~~~~-~~~~~~~~~~~~ 325 (419)
..++.||++++|+|+....+.++..+.+.+... ..++++|.||.|+..+- .... ....... ....
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~ 422 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRS 422 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCc
Confidence 999999999999999777777887777777652 37899999999997651 1110 0001111 1111
Q ss_pred CCCcEEEEeccCCCCHHHHHHHHHHHHhhc
Q psy17089 326 SFAMFNFISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 326 ~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
......++|+++++|++.|.+.+.+.+...
T Consensus 423 ~~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 423 VFPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred ccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 223456699999999999999998876543
No 12
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.94 E-value=6.1e-26 Score=209.41 Aligned_cols=170 Identities=23% Similarity=0.307 Sum_probs=132.9
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHh
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~ 263 (419)
+|+++|.||||||||+|+|++.+.+.+++.++||++.........+.++.+|||||+.... ..+.+++...+..++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK---HSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc---chHHHHHHHHHHHHHh
Confidence 6899999999999999999999888889999999988776666667789999999997653 1233344455667889
Q ss_pred hcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHHH
Q psy17089 264 EANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINS 343 (419)
Q Consensus 264 ~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~ 343 (419)
.+|++++|+|+++..+.. ..++..+...+.|+++|+||+|+............+ .......+++++||++|.|+++
T Consensus 79 ~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~---~~~~~~~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKY---AILEDFKDIVPISALTGDNTSF 154 (270)
T ss_pred hCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHH---HhhcCCCceEEEecCCCCCHHH
Confidence 999999999999876554 556777777899999999999997544332222222 2222334899999999999999
Q ss_pred HHHHHHHHHhhcCCCCC
Q psy17089 344 FMESINHVYDSSIIHLS 360 (419)
Q Consensus 344 l~~~i~~~~~~~~~~~~ 360 (419)
|++.+.+.++.....++
T Consensus 155 L~~~l~~~l~~~~~~~~ 171 (270)
T TIGR00436 155 LAAFIEVHLPEGPFRYP 171 (270)
T ss_pred HHHHHHHhCCCCCCCCC
Confidence 99999999887665444
No 13
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.94 E-value=4.4e-26 Score=188.92 Aligned_cols=150 Identities=31% Similarity=0.463 Sum_probs=119.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhC
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 83 (419)
+|+++|+||||||||+|+|+|.+ ..++.+||+|++...+.+.+++..+.++||||.......+..+++...+.. ....
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~-~~~~ 79 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLL-SEKP 79 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH-HTSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHh-hcCC
Confidence 69999999999999999999987 668999999999999999999999999999998765433333343333322 4689
Q ss_pred CEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc---h-hHH-hcCCCCeEEEeeccCCCHHHHHHHH
Q psy17089 84 DIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---L-DFY-ELGIGNPHIISALYGNGIKNFLENI 158 (419)
Q Consensus 84 d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~---~-~~~-~~~~~~~~~vSa~~~~~v~~l~~~i 158 (419)
|++++|+|+++ ...+..+...+.+.++|+++|+||+|...+... . .+. .+|. +++++||++++|+++|+++|
T Consensus 80 D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~-pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 80 DLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGV-PVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp SEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS--EEEEBTTTTBTHHHHHHHH
T ss_pred CEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCC-CEEEEEeCCCcCHHHHHhhC
Confidence 99999999987 566677888888899999999999999877665 1 222 4566 89999999999999999875
No 14
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.94 E-value=3.2e-25 Score=191.10 Aligned_cols=170 Identities=51% Similarity=0.835 Sum_probs=141.1
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~ 261 (419)
+++|+++|.+|+|||||+|+|++.......+.++++.+.....+...+..+.+|||||+.+.......++.+.......+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 57999999999999999999999876667788899988887778888889999999999776544445566665666678
Q ss_pred HhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCCh--hhHHHHHHHHHHHcCCCCCCcEEEEeccCCC
Q psy17089 262 ILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIH--NQRKIIKNNIKKKLNFLSFAMFNFISAIKLN 339 (419)
Q Consensus 262 ~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 339 (419)
++.+|++++|+|++++.+..+..++..+...+.|+++|+||+|+.+. .......+.+.+.+......+++++||++|.
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQ 161 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCC
Confidence 88999999999999998888888888887789999999999999765 3444555666666665556789999999999
Q ss_pred CHHHHHHHHHHH
Q psy17089 340 NINSFMESINHV 351 (419)
Q Consensus 340 gv~~l~~~i~~~ 351 (419)
|++++++.+.+.
T Consensus 162 ~i~~~~~~l~~~ 173 (174)
T cd01895 162 GVDKLFDAIDEV 173 (174)
T ss_pred CHHHHHHHHHHh
Confidence 999999988764
No 15
>PRK15494 era GTPase Era; Provisional
Probab=99.93 E-value=5.6e-25 Score=208.44 Aligned_cols=175 Identities=27% Similarity=0.310 Sum_probs=137.7
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
.+..+|+++|.+|||||||+|+|++.....+++.+++|++.....+..++.++.+|||||+.+.. ..+...+...+.
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~---~~l~~~~~r~~~ 126 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK---GSLEKAMVRCAW 126 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCc---ccHHHHHHHHHH
Confidence 35679999999999999999999998877788999999988888888888999999999996543 123333445555
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCC
Q psy17089 260 KSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLN 339 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 339 (419)
.++..||++++|+|++++....+..++..+...+.|.++|+||+|+.+. ......+.+.. .....+++++||++|.
T Consensus 127 ~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-~~~~~~~~l~~---~~~~~~i~~iSAktg~ 202 (339)
T PRK15494 127 SSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-YLNDIKAFLTE---NHPDSLLFPISALSGK 202 (339)
T ss_pred HHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-cHHHHHHHHHh---cCCCcEEEEEeccCcc
Confidence 6789999999999998877777777888888778889999999999643 22222222221 1223679999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCCH
Q psy17089 340 NINSFMESINHVYDSSIIHLST 361 (419)
Q Consensus 340 gv~~l~~~i~~~~~~~~~~~~~ 361 (419)
|++++++++.+.+++....++.
T Consensus 203 gv~eL~~~L~~~l~~~~~~~~~ 224 (339)
T PRK15494 203 NIDGLLEYITSKAKISPWLYAE 224 (339)
T ss_pred CHHHHHHHHHHhCCCCCCCCCC
Confidence 9999999999998877655543
No 16
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.93 E-value=1.2e-24 Score=225.55 Aligned_cols=164 Identities=27% Similarity=0.407 Sum_probs=132.1
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
...+|+++|+||||||||+|+|++...+.+++.+|+|++.......+++..+.+|||||+.... +.++......+..
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~ 350 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV---EGIDSAIASQAQI 350 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCC---ccHHHHHHHHHHH
Confidence 3468999999999999999999998777889999999999888888889999999999986432 1233333355567
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCC
Q psy17089 261 SILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNN 340 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 340 (419)
+++.||++++|+|++++.+..+..+.+.+...++|+++|+||+|+...... . . +.+. .+....+++||++|.|
T Consensus 351 ~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~--~-~---~~~~-lg~~~~~~iSA~~g~G 423 (712)
T PRK09518 351 AVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYD--A-A---EFWK-LGLGEPYPISAMHGRG 423 (712)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhh--H-H---HHHH-cCCCCeEEEECCCCCC
Confidence 889999999999999998888888999999999999999999998643211 1 1 1111 1222457999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy17089 341 INSFMESINHVYDS 354 (419)
Q Consensus 341 v~~l~~~i~~~~~~ 354 (419)
+++|++.+.+.+..
T Consensus 424 I~eLl~~i~~~l~~ 437 (712)
T PRK09518 424 VGDLLDEALDSLKV 437 (712)
T ss_pred chHHHHHHHHhccc
Confidence 99999999988755
No 17
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.93 E-value=1.6e-24 Score=199.92 Aligned_cols=162 Identities=28% Similarity=0.328 Sum_probs=131.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhC
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 83 (419)
+|+++|++|||||||+|+|++.+.+.+++.+++|++...+....++.++.+|||||+.+.. ..+.+.+...+..++.++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~-~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK-HSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc-chHHHHHHHHHHHHHhhC
Confidence 7999999999999999999998877788999999998777766677889999999987542 234445566677889999
Q ss_pred CEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc----hhHHh-cCCCCeEEEeeccCCCHHHHHHHH
Q psy17089 84 DIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDFYE-LGIGNPHIISALYGNGIKNFLENI 158 (419)
Q Consensus 84 d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~----~~~~~-~~~~~~~~vSa~~~~~v~~l~~~i 158 (419)
|++++|+|+++..... ..+.+.+...++|+++|+||+|+...... .++.. .++.+++++||++|.|++++++.+
T Consensus 81 Dvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l 159 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFI 159 (270)
T ss_pred CEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHH
Confidence 9999999998765543 66777787789999999999999754433 12222 234578999999999999999999
Q ss_pred HHhcCCcch
Q psy17089 159 LTIELPYKK 167 (419)
Q Consensus 159 ~~~~~~~~~ 167 (419)
.+.+++.+.
T Consensus 160 ~~~l~~~~~ 168 (270)
T TIGR00436 160 EVHLPEGPF 168 (270)
T ss_pred HHhCCCCCC
Confidence 999988764
No 18
>KOG0084|consensus
Probab=99.93 E-value=6.1e-25 Score=182.34 Aligned_cols=163 Identities=18% Similarity=0.118 Sum_probs=127.0
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
+-.+||.++|++|||||.|+.||.+.. +.-+-..++..|+....++++|+ ++.+|||+|| |+|+ ..
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~-f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQ----------ERFr-ti 74 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDT-FTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQ----------ERFR-TI 74 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCC-cchhhcceeeeEEEEEEeeecceEEEEEeeecccc----------HHHh-hh
Confidence 356899999999999999999999774 34444556778888888998887 5667999999 7776 55
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCc-EEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAM-FNF 332 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 332 (419)
+.+|+++||++|+|+|+++..++... +|+..+.. .++|.++|+||+|+.+..... .+..+.++...+.+ +++
T Consensus 75 t~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~---~~~a~~fa~~~~~~~f~E 151 (205)
T KOG0084|consen 75 TSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVS---TEEAQEFADELGIPIFLE 151 (205)
T ss_pred hHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecC---HHHHHHHHHhcCCcceee
Confidence 66899999999999999999888886 45555554 578999999999996543321 11112233333456 999
Q ss_pred EeccCCCCHHHHHHHHHHHHhhcCC
Q psy17089 333 ISAIKLNNINSFMESINHVYDSSII 357 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~~~~ 357 (419)
+|||.+.||++.|..++..+.....
T Consensus 152 TSAK~~~NVe~~F~~la~~lk~~~~ 176 (205)
T KOG0084|consen 152 TSAKDSTNVEDAFLTLAKELKQRKG 176 (205)
T ss_pred cccCCccCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999998776543
No 19
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.93 E-value=2.4e-24 Score=202.68 Aligned_cols=160 Identities=28% Similarity=0.362 Sum_probs=138.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.+++|+|+||||||||+|+|++++.+++++.||||||.....+.++|.++.++||+|+-++. +...+...+.....+.+
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~-d~VE~iGIeRs~~~i~~ 296 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETD-DVVERIGIERAKKAIEE 296 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCc-cHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999999999999997554 66677778888999999
Q ss_pred CCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcchhH-HhcCCCCeEEEeeccCCCHHHHHHHHHHh
Q psy17089 83 SDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSISLDF-YELGIGNPHIISALYGNGIKNFLENILTI 161 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~-~~~~~~~~~~vSa~~~~~v~~l~~~i~~~ 161 (419)
||+++||+|++.+....+..+.. +...++|+++|.||+|+......... +..+. ..+.+||++|.|++.|.++|.+.
T Consensus 297 ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~~~~~~~-~~i~iSa~t~~Gl~~L~~~i~~~ 374 (454)
T COG0486 297 ADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELESEKLANGD-AIISISAKTGEGLDALREAIKQL 374 (454)
T ss_pred CCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccccchhhccCCC-ceEEEEecCccCHHHHHHHHHHH
Confidence 99999999999887788777777 44468999999999999987765222 12222 57999999999999999999987
Q ss_pred cCCc
Q psy17089 162 ELPY 165 (419)
Q Consensus 162 ~~~~ 165 (419)
+...
T Consensus 375 ~~~~ 378 (454)
T COG0486 375 FGKG 378 (454)
T ss_pred Hhhc
Confidence 6654
No 20
>PRK15494 era GTPase Era; Provisional
Probab=99.92 E-value=8.1e-24 Score=200.52 Aligned_cols=163 Identities=23% Similarity=0.274 Sum_probs=134.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhC
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 83 (419)
+|+++|++|||||||+|+|++...+.+++.+++|++...+.+.+++.++.+|||||+.+.. ..+.+.+......++.++
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~-~~l~~~~~r~~~~~l~~a 132 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK-GSLEKAMVRCAWSSLHSA 132 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCc-ccHHHHHHHHHHHHhhhC
Confidence 8999999999999999999998777777888999998888888999999999999996432 234445666666778999
Q ss_pred CEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc--hhHHh-cC-CCCeEEEeeccCCCHHHHHHHHH
Q psy17089 84 DIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS--LDFYE-LG-IGNPHIISALYGNGIKNFLENIL 159 (419)
Q Consensus 84 d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~--~~~~~-~~-~~~~~~vSa~~~~~v~~l~~~i~ 159 (419)
|+++||+|+.+++...+.++++.++..+.|.++|+||+|+...... .+++. .. ...++++||++|.|++++++.|.
T Consensus 133 Dvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~ 212 (339)
T PRK15494 133 DLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYIT 212 (339)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHH
Confidence 9999999998888888788888888778899999999998654211 23332 22 24689999999999999999999
Q ss_pred HhcCCcch
Q psy17089 160 TIELPYKK 167 (419)
Q Consensus 160 ~~~~~~~~ 167 (419)
+.+++.+-
T Consensus 213 ~~l~~~~~ 220 (339)
T PRK15494 213 SKAKISPW 220 (339)
T ss_pred HhCCCCCC
Confidence 99998764
No 21
>KOG0092|consensus
Probab=99.92 E-value=9.4e-25 Score=180.50 Aligned_cols=163 Identities=19% Similarity=0.196 Sum_probs=121.7
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
..+||+++|..|||||||+-|+.... +.....+++...+....+..++ .++.||||+|+ |+|.....
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~-F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQ----------ERy~slap 72 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQ-FHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQ----------ERYHSLAP 72 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCc-cccccccccccEEEEEEEEeCCcEEEEEEEEcCCc----------cccccccc
Confidence 56899999999999999999998664 3333456666667777777766 57778999999 55554433
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHHcC---CcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYESG---RSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~~~---~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
.|+|+|+++|+|||+++..++... .|+..|.+.. +-+.+|+||+||....... .++. ..++...+..++++|
T Consensus 73 -MYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~--~~ea-~~yAe~~gll~~ETS 148 (200)
T KOG0092|consen 73 -MYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVE--FEEA-QAYAESQGLLFFETS 148 (200)
T ss_pred -ceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhccccc--HHHH-HHHHHhcCCEEEEEe
Confidence 699999999999999998887775 4777777643 4466799999997632211 1111 222223457999999
Q ss_pred ccCCCCHHHHHHHHHHHHhhcCCC
Q psy17089 335 AIKLNNINSFMESINHVYDSSIIH 358 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~~~~~~ 358 (419)
||+|.|++++|..|.+.++.....
T Consensus 149 AKTg~Nv~~if~~Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 149 AKTGENVNEIFQAIAEKLPCSDPQ 172 (200)
T ss_pred cccccCHHHHHHHHHHhccCcccc
Confidence 999999999999999988766543
No 22
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.92 E-value=1.1e-23 Score=178.58 Aligned_cols=155 Identities=54% Similarity=0.915 Sum_probs=131.3
Q ss_pred EEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCE
Q psy17089 6 VLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDI 85 (419)
Q Consensus 6 ~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ 85 (419)
+++|.+|||||||+|+|++......+..+++|++.......+.+..+.+|||||+.+... ...+.+.......+..+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~-~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE-GISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh-HHHHHHHHHHHHHHHhCCE
Confidence 589999999999999999986666778889999999989999999999999999985542 3445566667778899999
Q ss_pred EEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc-hhHHhcCCCCeEEEeeccCCCHHHHHHHHHHh
Q psy17089 86 IIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-LDFYELGIGNPHIISALYGNGIKNFLENILTI 161 (419)
Q Consensus 86 il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~vSa~~~~~v~~l~~~i~~~ 161 (419)
+++|+|+.++....+.++.+++++.+.|+++|+||+|+...... ..+...+..+++++||+++.|++++++.+.+.
T Consensus 80 ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 80 ILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDEAAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred EEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHHHHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 99999998887788888888898889999999999999876554 34445666688999999999999999999864
No 23
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=1.4e-23 Score=179.20 Aligned_cols=156 Identities=22% Similarity=0.237 Sum_probs=113.1
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeee--cCCCCccceeeeEeeEEe-CeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVIT--YDTPGTTRDSIKSLFEYN-NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
.|+++|++|||||||+|+|++...... ...+++|.+.....+.+. +..+.+|||||+ ++|. .....
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~----------~~~~-~~~~~ 70 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGH----------EKFI-KNMLA 70 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCCh----------HHHH-HHHHh
Confidence 689999999999999999997532222 234567777666666665 778999999998 3443 23346
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCC-cEEEEEEcccCCChhhHHHHHHHHHHHcCCC--CCCcEEEEeccC
Q psy17089 261 SILEANVVILLLDAQQNISAQDINIANFIYESGR-SLIVCVNKWDSIIHNQRKIIKNNIKKKLNFL--SFAMFNFISAIK 337 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~SA~~ 337 (419)
+++.+|++++|+|++++...+....+..+...+. |+++|+||+|+..........+++.+.+... ...+++++||++
T Consensus 71 ~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (164)
T cd04171 71 GAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVT 150 (164)
T ss_pred hhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCC
Confidence 7889999999999988654555554555555555 9999999999976543333334444444432 357899999999
Q ss_pred CCCHHHHHHHHHH
Q psy17089 338 LNNINSFMESINH 350 (419)
Q Consensus 338 g~gv~~l~~~i~~ 350 (419)
|.|++++++.+.+
T Consensus 151 ~~~v~~l~~~l~~ 163 (164)
T cd04171 151 GEGIEELKEYLDE 163 (164)
T ss_pred CcCHHHHHHHHhh
Confidence 9999999988754
No 24
>PRK00089 era GTPase Era; Reviewed
Probab=99.92 E-value=2.9e-23 Score=194.25 Aligned_cols=173 Identities=27% Similarity=0.401 Sum_probs=136.6
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+.-.|+++|.||||||||+|+|++...+.+++.+.+|+.........++.++.+|||||+.+.. ..+.++....+..
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~~ 80 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAWS 80 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHHH
Confidence 3457999999999999999999999888889999999987766665566799999999997654 2334444455567
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCC-ChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCC
Q psy17089 261 SILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSI-IHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLN 339 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 339 (419)
++..+|++++|+|++++.+..+..+++.+...+.|+++|+||+|+. .........+.+.+. ....+++++||++|.
T Consensus 81 ~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~---~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 81 SLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSEL---MDFAEIVPISALKGD 157 (292)
T ss_pred HHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhh---CCCCeEEEecCCCCC
Confidence 8889999999999999777777778888877789999999999998 334433333333332 335789999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCC
Q psy17089 340 NINSFMESINHVYDSSIIHL 359 (419)
Q Consensus 340 gv~~l~~~i~~~~~~~~~~~ 359 (419)
|+++|++.+.+.++.....+
T Consensus 158 gv~~L~~~L~~~l~~~~~~y 177 (292)
T PRK00089 158 NVDELLDVIAKYLPEGPPYY 177 (292)
T ss_pred CHHHHHHHHHHhCCCCCCCC
Confidence 99999999999987655433
No 25
>KOG0094|consensus
Probab=99.91 E-value=8.4e-24 Score=174.69 Aligned_cols=161 Identities=19% Similarity=0.202 Sum_probs=127.0
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
+..||+++|+.+|||||||+++.... +...-.+++..|+...++++.|+ ++.+|||||| |+|+....
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~-fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQ----------ERFrslip 89 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDK-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRSLIP 89 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhh-hcccccceeeeEEEEEEEEEcCcEEEEEEEecccH----------HHHhhhhh
Confidence 45899999999999999999999653 44445667888999999998876 5566999999 88875544
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHHc----CCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEE
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYES----GRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~~----~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (419)
.|++++.++|+|+|+++..++++. +|++.+... +.-+++|+||.||.++.+....+.+ ...+. -++.|+++
T Consensus 90 -sY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~--~kAke-l~a~f~et 165 (221)
T KOG0094|consen 90 -SYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGE--RKAKE-LNAEFIET 165 (221)
T ss_pred -hhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHH--HHHHH-hCcEEEEe
Confidence 899999999999999999888775 677777653 3568999999999887554322222 22222 23689999
Q ss_pred eccCCCCHHHHHHHHHHHHhhcC
Q psy17089 334 SAIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~~~ 356 (419)
||+.|.||.+||..|...++...
T Consensus 166 sak~g~NVk~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 166 SAKAGENVKQLFRRIAAALPGME 188 (221)
T ss_pred cccCCCCHHHHHHHHHHhccCcc
Confidence 99999999999999988877654
No 26
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.91 E-value=1.3e-23 Score=206.12 Aligned_cols=158 Identities=36% Similarity=0.458 Sum_probs=131.5
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
..++|+++|.+|+|||||+|+|++.+...+++.+|+|++.....+.+++.++.+|||||+.+.. +.++.+....+..
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~---~~ie~~gi~~~~~ 290 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD---DEVEKIGIERSRE 290 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc---cHHHHHHHHHHHH
Confidence 5689999999999999999999998777888999999999998899999999999999997643 4456555566677
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCC
Q psy17089 261 SILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNN 340 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 340 (419)
+++.||++++|+|++++.+..+..++.. ..+.|+++|+||+|+.+..... .....+++++||++|.|
T Consensus 291 ~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 291 AIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeCCCC
Confidence 8999999999999999887776665554 4579999999999996543211 12235789999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy17089 341 INSFMESINHVYDS 354 (419)
Q Consensus 341 v~~l~~~i~~~~~~ 354 (419)
+++|++.+.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 27
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.91 E-value=1.1e-23 Score=185.12 Aligned_cols=158 Identities=20% Similarity=0.211 Sum_probs=112.9
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
++|+++|.+|||||||++++..... .....++++.+.....+.+++ ..+.+|||||+ ++|.... ..
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f-~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGq----------e~~~~l~-~~ 68 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTF-CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQ----------ERFNSIT-SA 68 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCc----------hhhHHHH-HH
Confidence 4699999999999999999997642 222233445566556667766 46678999999 4454333 36
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEecc
Q psy17089 261 SILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAI 336 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 336 (419)
+++.||++|+|+|++++.++++.. |+..+.. .+.|+++|+||+|+.+..... .....+......+..++++||+
T Consensus 69 y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~--~~~~~~~a~~~~~~~~~etSAk 146 (202)
T cd04120 69 YYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREIS--RQQGEKFAQQITGMRFCEASAK 146 (202)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccC--HHHHHHHHHhcCCCEEEEecCC
Confidence 899999999999999998888764 4444443 468999999999996433221 1111111112224689999999
Q ss_pred CCCCHHHHHHHHHHHHhh
Q psy17089 337 KLNNINSFMESINHVYDS 354 (419)
Q Consensus 337 ~g~gv~~l~~~i~~~~~~ 354 (419)
+|.|++++|.++.+.+..
T Consensus 147 tg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 147 DNFNVDEIFLKLVDDILK 164 (202)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999987754
No 28
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=3e-23 Score=175.86 Aligned_cols=156 Identities=36% Similarity=0.519 Sum_probs=123.6
Q ss_pred EEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhc
Q psy17089 186 AIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEA 265 (419)
Q Consensus 186 ~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~a 265 (419)
+++|.+|+|||||+|+|++......++.+++|.+........++..+.+|||||+.+... .+.+.........++.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE---GISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHHhC
Confidence 579999999999999999987667778889998888888888889999999999976542 12222223445678899
Q ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHHHHH
Q psy17089 266 NVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFM 345 (419)
Q Consensus 266 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~ 345 (419)
|++++|+|++++.+..+..+.+++...+.|+++|+||+|+...... ... +...+..+++++||++|.|+++++
T Consensus 78 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~~----~~~~~~~~~~~~Sa~~~~gv~~l~ 150 (157)
T cd01894 78 DVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE---AAE----FYSLGFGEPIPISAEHGRGIGDLL 150 (157)
T ss_pred CEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH---HHH----HHhcCCCCeEEEecccCCCHHHHH
Confidence 9999999999888777777888888889999999999999765432 111 112223378999999999999999
Q ss_pred HHHHHH
Q psy17089 346 ESINHV 351 (419)
Q Consensus 346 ~~i~~~ 351 (419)
+++.+.
T Consensus 151 ~~l~~~ 156 (157)
T cd01894 151 DAILEL 156 (157)
T ss_pred HHHHhh
Confidence 998864
No 29
>KOG0078|consensus
Probab=99.91 E-value=1.4e-23 Score=177.03 Aligned_cols=160 Identities=24% Similarity=0.157 Sum_probs=127.1
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCee--EEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKK--YILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
+..+||+++|++|||||+++-++... .+..+......+++...++..++.. +.+|||+|| |+|+..
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~-~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQ----------erf~ti- 77 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDD-SFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQ----------ERFRTI- 77 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhc-cCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccc----------hhHHHH-
Confidence 56799999999999999999999865 3455556667888888888888864 556999999 777644
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (419)
+.+|+++|+++++|||+++..++++. .|++.+.+ .+.|.++|+||+|+..... +..+-.+.++.-.+++|+++
T Consensus 78 ~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~---V~~e~ge~lA~e~G~~F~Et 154 (207)
T KOG0078|consen 78 TTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQ---VSKERGEALAREYGIKFFET 154 (207)
T ss_pred HHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccccccc---ccHHHHHHHHHHhCCeEEEc
Confidence 44899999999999999998888875 46666665 4789999999999965322 22222333343446899999
Q ss_pred eccCCCCHHHHHHHHHHHHhh
Q psy17089 334 SAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~ 354 (419)
|||+|.||++.|-.+++.+..
T Consensus 155 SAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 155 SAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred cccCCCCHHHHHHHHHHHHHh
Confidence 999999999999999998775
No 30
>KOG0084|consensus
Probab=99.91 E-value=1.6e-23 Score=173.83 Aligned_cols=154 Identities=21% Similarity=0.179 Sum_probs=122.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
++||+|+|++|||||.|..||.+.. +......++..|.....+.++|. .++||||+||+ +|+..+..+
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~-f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQE---------RFrtit~sy 78 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDT-FTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQE---------RFRTITSSY 78 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCC-cchhhcceeeeEEEEEEeeecceEEEEEeeeccccH---------HHhhhhHhh
Confidence 4799999999999999999999753 32334456788999999999986 56799999998 899999999
Q ss_pred HHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
+++||+|++|+|.+..-+... ..|++.+++ .+.|.++|+||||+...+.+ .+|. .++...++++||+.+.
T Consensus 79 YR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~ 158 (205)
T KOG0084|consen 79 YRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDST 158 (205)
T ss_pred ccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCcc
Confidence 999999999999886433322 333444444 36799999999999988876 2444 4555448999999999
Q ss_pred CHHHHHHHHHHhcCCc
Q psy17089 150 GIKNFLENILTIELPY 165 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~~ 165 (419)
|+++.|..|...+...
T Consensus 159 NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 159 NVEDAFLTLAKELKQR 174 (205)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999998776554
No 31
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.91 E-value=5.3e-23 Score=176.61 Aligned_cols=161 Identities=23% Similarity=0.284 Sum_probs=112.9
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcch-HHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTF-EVIEKFSVIKTLKS 261 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~e~~~~~~~~~~ 261 (419)
++|+++|.+|+|||||+|+|++... .+++++++|.+.......+++.++.+|||||+.+..... ..++. ..... .
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-~~~~~--~ 76 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEM-QAITA--L 76 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHH-HHHHH--H
Confidence 3799999999999999999998753 455677878877766666677899999999985432110 01111 11111 1
Q ss_pred HhhcCEEEEEecCCCCCCH---HHHHHHHHHHHc--CCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEecc
Q psy17089 262 ILEANVVILLLDAQQNISA---QDINIANFIYES--GRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAI 336 (419)
Q Consensus 262 ~~~ad~~i~v~d~~~~~~~---~~~~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 336 (419)
...+|++++|+|+++..+. ....++..+... +.|+++|+||+|+.+...... .. .+......+++++||+
T Consensus 77 ~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~----~~-~~~~~~~~~~~~~Sa~ 151 (168)
T cd01897 77 AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE----IE-EEEELEGEEVLKISTL 151 (168)
T ss_pred HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH----HH-HhhhhccCceEEEEec
Confidence 2236899999999976442 223566666654 799999999999976544322 11 1222345689999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy17089 337 KLNNINSFMESINHVY 352 (419)
Q Consensus 337 ~g~gv~~l~~~i~~~~ 352 (419)
+|.|++++++++.+.+
T Consensus 152 ~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 152 TEEGVDEVKNKACELL 167 (168)
T ss_pred ccCCHHHHHHHHHHHh
Confidence 9999999999998764
No 32
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.91 E-value=9.4e-23 Score=172.69 Aligned_cols=155 Identities=36% Similarity=0.538 Sum_probs=124.7
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (419)
++|+++|++|+|||||+|++++.....+.+.++++.+.....+.+.+.++.+|||||+.+... ..+..........+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~ 78 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETED---EIEKIGIERAREAI 78 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcc---hHHHHHHHHHHHHH
Confidence 689999999999999999999987667788899999888777888888999999999976642 22332334455678
Q ss_pred hhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHH
Q psy17089 263 LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNIN 342 (419)
Q Consensus 263 ~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 342 (419)
..+|++++|+|++++.+..+.+.+.. ..+.|+++|+||+|+.+.... .......+++++||+++.|++
T Consensus 79 ~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 79 EEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCCHH
Confidence 89999999999999887877766555 568999999999999765432 122234689999999999999
Q ss_pred HHHHHHHHHH
Q psy17089 343 SFMESINHVY 352 (419)
Q Consensus 343 ~l~~~i~~~~ 352 (419)
+++++|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 33
>KOG0394|consensus
Probab=99.91 E-value=7.4e-24 Score=173.24 Aligned_cols=165 Identities=18% Similarity=0.205 Sum_probs=127.1
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCee--EEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKK--YILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
..+||+++|++|||||||+|++...+. .......+..++....+..+++. ++||||+|+ |+|....+
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF-~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQ----------ERFqsLg~ 76 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKF-SQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQ----------ERFQSLGV 76 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHH-HHHhccccchhheeeEEEEcCeEEEEEEEecccH----------HHhhhccc
Confidence 569999999999999999999997643 33344566777777888888765 456999999 66665544
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHHHHHH--HHHH------cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcE
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDINIAN--FIYE------SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMF 330 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~~~~~--~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (419)
..+++||++++++|+++..++..+.-|+ ++.. ..-|+|+++||+|+.....+...........+..+.+|+
T Consensus 77 -aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipy 155 (210)
T KOG0394|consen 77 -AFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPY 155 (210)
T ss_pred -ceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCcee
Confidence 6899999999999999998888875432 2222 347899999999996644333333444455566678999
Q ss_pred EEEeccCCCCHHHHHHHHHHHHhhcCC
Q psy17089 331 NFISAIKLNNINSFMESINHVYDSSII 357 (419)
Q Consensus 331 ~~~SA~~g~gv~~l~~~i~~~~~~~~~ 357 (419)
|++|||.+.||++.|..+.+.+.....
T Consensus 156 fEtSAK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 156 FETSAKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred EEecccccccHHHHHHHHHHHHHhccc
Confidence 999999999999999999998776553
No 34
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.91 E-value=5.3e-23 Score=200.62 Aligned_cols=161 Identities=34% Similarity=0.489 Sum_probs=130.6
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
..+++|+++|.||||||||+|+|++.+...+++++|+|++.....+.+++.++.+|||||+.+.. +.+|++...++.
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~---~~ie~~gi~~~~ 277 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA---DFVERLGIEKSF 277 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch---hHHHHHHHHHHH
Confidence 46789999999999999999999998777889999999999999999999999999999997654 344655555667
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCC
Q psy17089 260 KSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLN 339 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 339 (419)
.+++.+|++++|+|++++.+..+. ++..+...++|+++|+||+|+... ... .+.+ ..+.+++++||++ .
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~-~~~----~~~~----~~~~~~~~vSak~-~ 346 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN-SLE----FFVS----SKVLNSSNLSAKQ-L 346 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc-chh----hhhh----hcCCceEEEEEec-C
Confidence 889999999999999998877766 666666678999999999999643 111 1111 1235789999998 6
Q ss_pred CHHHHHHHHHHHHhh
Q psy17089 340 NINSFMESINHVYDS 354 (419)
Q Consensus 340 gv~~l~~~i~~~~~~ 354 (419)
|++++++.+.+.+..
T Consensus 347 gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 347 KIKALVDLLTQKINA 361 (442)
T ss_pred CHHHHHHHHHHHHHH
Confidence 899988888887654
No 35
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=9.2e-23 Score=202.41 Aligned_cols=164 Identities=26% Similarity=0.405 Sum_probs=130.1
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
...+|+++|.+|||||||+|+|++...+.+.+.+|+|++.......+.+..+.+|||||+.... ..+.......+..
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~---~~~~~~~~~~~~~ 113 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA---KGLQASVAEQAEV 113 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc---hhHHHHHHHHHHH
Confidence 3468999999999999999999998767788999999999888888889999999999986432 1222222244556
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCC
Q psy17089 261 SILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNN 340 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 340 (419)
+++.||++|+|+|++++.+..+..+..++...++|+++|+||+|+..... .. .+.+. .+....+++||++|.|
T Consensus 114 ~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~--~~----~~~~~-~g~~~~~~iSA~~g~g 186 (472)
T PRK03003 114 AMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA--DA----AALWS-LGLGEPHPVSALHGRG 186 (472)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch--hh----HHHHh-cCCCCeEEEEcCCCCC
Confidence 88999999999999999988888889999889999999999999864321 11 11111 1222457999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy17089 341 INSFMESINHVYDS 354 (419)
Q Consensus 341 v~~l~~~i~~~~~~ 354 (419)
+++|++.+.+.+..
T Consensus 187 i~eL~~~i~~~l~~ 200 (472)
T PRK03003 187 VGDLLDAVLAALPE 200 (472)
T ss_pred cHHHHHHHHhhccc
Confidence 99999999988755
No 36
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.90 E-value=1.3e-22 Score=192.51 Aligned_cols=158 Identities=25% Similarity=0.374 Sum_probs=121.1
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEE-eCeeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY-NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
..++|+++|.||||||||+|+|++.+ +.+.+.+++|.++....+.+ ++.++.+|||||+.+.. ..+..+.|. .++
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l-~~~lie~f~--~tl 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL-PHELVAAFR--ATL 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccC-CHHHHHHHH--HHH
Confidence 55899999999999999999999986 56778899999999888888 56899999999984321 124456653 455
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 260 KSILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
.++..||++++|+|++++.+..+.. +...+.+ .++|+++|+||+|+.+..... ... . ...+++++||
T Consensus 264 e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~----~~~---~--~~~~~i~iSA 334 (351)
T TIGR03156 264 EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIE----RLE---E--GYPEAVFVSA 334 (351)
T ss_pred HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHH----HHH---h--CCCCEEEEEc
Confidence 6899999999999999887665543 2333333 478999999999997543221 111 1 1246899999
Q ss_pred cCCCCHHHHHHHHHHH
Q psy17089 336 IKLNNINSFMESINHV 351 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~ 351 (419)
++|.|+++|++.|.+.
T Consensus 335 ktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 335 KTGEGLDLLLEAIAER 350 (351)
T ss_pred cCCCCHHHHHHHHHhh
Confidence 9999999999988754
No 37
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.90 E-value=1.2e-22 Score=174.65 Aligned_cols=160 Identities=20% Similarity=0.221 Sum_probs=115.5
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe-eEEEEeCCCCCCCCcchHHHHHHHHHHHHHHH
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK-KYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (419)
+|+++|.+|||||||+|+|.+... .++..+++|.+.....+.+++. .+.+|||||+.+..... +. .....++.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~---~~-~~~~~~~~~ 76 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG---KG-LGHRFLRHI 76 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc---CC-chHHHHHHH
Confidence 589999999999999999998753 5667788888777777777776 99999999985432110 01 112333556
Q ss_pred hhcCEEEEEecCCCC-CCHHHH-HHHHHHHH-----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 263 LEANVVILLLDAQQN-ISAQDI-NIANFIYE-----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 263 ~~ad~~i~v~d~~~~-~~~~~~-~~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
..+|++++|+|++++ .+.+.. .+.+.+.+ .++|+++|+||+|+.+.......... ........+++++||
T Consensus 77 ~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~~Sa 153 (170)
T cd01898 77 ERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKE---LLKELWGKPVFPISA 153 (170)
T ss_pred HhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHH---HHhhCCCCCEEEEec
Confidence 789999999999987 455554 34444443 36899999999999765543332222 222223468999999
Q ss_pred cCCCCHHHHHHHHHHH
Q psy17089 336 IKLNNINSFMESINHV 351 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~ 351 (419)
++|.|++++++++.+.
T Consensus 154 ~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 154 LTGEGLDELLRKLAEL 169 (170)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999998764
No 38
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=1.2e-22 Score=200.64 Aligned_cols=161 Identities=34% Similarity=0.497 Sum_probs=133.0
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHh
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~ 263 (419)
+|+++|++|||||||+|+|++...+.+++.+|+|++.......+.+..+.+|||||+.... +.+.......+..+++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~---~~~~~~~~~~~~~~~~ 77 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDD---DGLDKQIREQAEIAIE 77 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcc---hhHHHHHHHHHHHHHh
Confidence 4899999999999999999998877889999999999999999999999999999985432 2232333355667889
Q ss_pred hcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHHH
Q psy17089 264 EANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINS 343 (419)
Q Consensus 264 ~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~ 343 (419)
.||++++|+|++.+.+..+..+.+++.+.++|+++|+||+|+...... . .+ +...+..+++++||++|.|+++
T Consensus 78 ~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~--~-~~----~~~lg~~~~~~vSa~~g~gv~~ 150 (429)
T TIGR03594 78 EADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV--A-AE----FYSLGFGEPIPISAEHGRGIGD 150 (429)
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc--H-HH----HHhcCCCCeEEEeCCcCCChHH
Confidence 999999999999999999999999999999999999999998654321 1 11 1223445789999999999999
Q ss_pred HHHHHHHHHhh
Q psy17089 344 FMESINHVYDS 354 (419)
Q Consensus 344 l~~~i~~~~~~ 354 (419)
+++.+.+.+..
T Consensus 151 ll~~i~~~l~~ 161 (429)
T TIGR03594 151 LLDAILELLPE 161 (429)
T ss_pred HHHHHHHhcCc
Confidence 99999988754
No 39
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.90 E-value=1.2e-22 Score=178.46 Aligned_cols=182 Identities=16% Similarity=0.153 Sum_probs=119.9
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|||||||++++.+.+. .....|+++.+.....+.+++. .+.+|||||+..+.... .+.+. .....
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f-~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~--~~e~~-~~~~~ 76 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEF-PEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTA--GQEWM-DPRFR 76 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCC-CcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccc--hhHHH-HHHHh
Confidence 4899999999999999999998753 2223444444444444556664 56789999986543111 11221 12335
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH------cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEE
Q psy17089 261 SILEANVVILLLDAQQNISAQDIN-IANFIYE------SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (419)
+++.+|++++|+|++++.+++... +++.+.+ .++|+++|+||+|+...... ..+...........++++++
T Consensus 77 ~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~e~ 154 (198)
T cd04142 77 GLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFA--PRHVLSVLVRKSWKCGYLEC 154 (198)
T ss_pred hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccc--cHHHHHHHHHHhcCCcEEEe
Confidence 678999999999999987776643 4444432 46899999999999643211 11122222222235799999
Q ss_pred eccCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q psy17089 334 SAIKLNNINSFMESINHVYDSSIIHLSTSRITRALISAIK 373 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~ 373 (419)
||++|.|++++|+.+.+.+..+.+..+ ....++.++.
T Consensus 155 Sak~g~~v~~lf~~i~~~~~~~~~~~~---~~~~~~~~~~ 191 (198)
T cd04142 155 SAKYNWHILLLFKELLISATTRGRSTH---PALRLQGALH 191 (198)
T ss_pred cCCCCCCHHHHHHHHHHHhhccCCCcc---HHHHHHHHHh
Confidence 999999999999999988776654432 3344455443
No 40
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.90 E-value=2.1e-22 Score=191.07 Aligned_cols=156 Identities=27% Similarity=0.362 Sum_probs=120.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEE-CCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI-GKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
++|+++|.+|||||||+|+|++.. ..+.+.+++|+|+....+.+ ++..+.+|||||+....++...+.+. .+...+.
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~-~tle~~~ 267 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFR-ATLEEVR 267 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHH-HHHHHHH
Confidence 789999999999999999999875 66788899999999999998 67899999999995432344444554 3556799
Q ss_pred hCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcchhHHhcCCCCeEEEeeccCCCHHHHHHH
Q psy17089 82 ESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLEN 157 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~vSa~~~~~v~~l~~~ 157 (419)
+||++++|+|++++..... ..+.++++. .++|+++|+||+|+........ ...+..+++++||++|.|++++++.
T Consensus 268 ~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~-~~~~~~~~i~iSAktg~GI~eL~~~ 346 (351)
T TIGR03156 268 EADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIER-LEEGYPEAVFVSAKTGEGLDLLLEA 346 (351)
T ss_pred hCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHH-HHhCCCCEEEEEccCCCCHHHHHHH
Confidence 9999999999987655443 223344444 3789999999999975433221 1122236899999999999999999
Q ss_pred HHHh
Q psy17089 158 ILTI 161 (419)
Q Consensus 158 i~~~ 161 (419)
|.+.
T Consensus 347 I~~~ 350 (351)
T TIGR03156 347 IAER 350 (351)
T ss_pred HHhh
Confidence 8764
No 41
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.90 E-value=2.5e-22 Score=172.35 Aligned_cols=158 Identities=25% Similarity=0.292 Sum_probs=113.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHH-HH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQA-II 81 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~ 81 (419)
|+|+++|++|||||||+|+|++... .++.++++|.+.......+++..+.+|||||+.+...+.. ..+....... ..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEER-NTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCC-chHHHHHHHHHHh
Confidence 6899999999999999999998753 2455677888888877777889999999999864221110 0111111212 23
Q ss_pred hCCEEEEEEeCCCCCC---HhHHHHHHHHHhc--CCCEEEEEeccCCCCCCcc---hhHHhcCCCCeEEEeeccCCCHHH
Q psy17089 82 ESDIIIFIVDGRQGLV---EQDKLITNFLRKS--GQPIVLVINKSENINSSIS---LDFYELGIGNPHIISALYGNGIKN 153 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~---~~~~~~~~~l~~~--~~p~ilv~NK~Dl~~~~~~---~~~~~~~~~~~~~vSa~~~~~v~~ 153 (419)
.+|++++|+|+.+... .....+.+.++.. +.|+++|+||+|+...... .++......+++++||++|.|+++
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDE 158 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHH
Confidence 3689999999876433 2223455566554 7899999999999776554 233343445789999999999999
Q ss_pred HHHHHHHhc
Q psy17089 154 FLENILTIE 162 (419)
Q Consensus 154 l~~~i~~~~ 162 (419)
+++++.+.+
T Consensus 159 l~~~l~~~~ 167 (168)
T cd01897 159 VKNKACELL 167 (168)
T ss_pred HHHHHHHHh
Confidence 999998764
No 42
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.90 E-value=2.8e-22 Score=170.75 Aligned_cols=153 Identities=18% Similarity=0.195 Sum_probs=107.0
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|||||||+++|++.. ....+.+++.+.....+..++. .+.+|||||+.+ |.... ..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~l~-~~ 68 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE----------YSAMR-DQ 68 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcc----------hHHHH-HH
Confidence 689999999999999999999764 2334445554444455555554 466799999843 33222 25
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 261 SILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
+++.+|++++|+|+++..++.+.. ++..+.+ .+.|+++|+||+|+............+.+.+ +.+++++||
T Consensus 69 ~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~Sa 144 (162)
T cd04138 69 YMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSY----GIPYIETSA 144 (162)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHh----CCeEEEecC
Confidence 788999999999999876666543 4444433 4789999999999965322111111222222 358999999
Q ss_pred cCCCCHHHHHHHHHHHH
Q psy17089 336 IKLNNINSFMESINHVY 352 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~~ 352 (419)
++|.|++++|+++.+.+
T Consensus 145 ~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 145 KTRQGVEEAFYTLVREI 161 (162)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998653
No 43
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.90 E-value=1.8e-22 Score=177.22 Aligned_cols=160 Identities=21% Similarity=0.217 Sum_probs=115.3
Q ss_pred eEEEEEeCCCCchhHHHHHHhCC------ceeeecCCCCccceeeeEeeEEe--------------CeeEEEEeCCCCCC
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGE------NRVITYDTPGTTRDSIKSLFEYN--------------NKKYILIDTAGIRR 242 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~------~~~~~~~~~~~t~~~~~~~~~~~--------------~~~~~liDtpG~~~ 242 (419)
++|+++|++|+|||||+++|++. +....+..+|+|.+.....+.+. +..+.+|||||+.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~- 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA- 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH-
Confidence 47999999999999999999973 12223345577777666555554 6689999999982
Q ss_pred CCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHH--
Q psy17089 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKK-- 320 (419)
Q Consensus 243 ~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~-- 320 (419)
.+. .........+|++++|+|++++.+.++.+.+......+.|+++|+||+|+..........+.+.+
T Consensus 80 ---------~~~-~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l 149 (192)
T cd01889 80 ---------SLI-RTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKL 149 (192)
T ss_pred ---------HHH-HHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHH
Confidence 221 23335567799999999999887777665555555568899999999999755443322333322
Q ss_pred --HcC--CCCCCcEEEEeccCCCCHHHHHHHHHHHHh
Q psy17089 321 --KLN--FLSFAMFNFISAIKLNNINSFMESINHVYD 353 (419)
Q Consensus 321 --~~~--~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~ 353 (419)
.+. .....+++++||++|.|+++|++.+...+.
T Consensus 150 ~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 150 QKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 221 123578999999999999999999987654
No 44
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.90 E-value=2.1e-22 Score=175.33 Aligned_cols=158 Identities=20% Similarity=0.179 Sum_probs=113.1
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCC-CCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDT-PGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
..+||+++|..|||||||+.+|.+... ..++ +..+.+.....+..++. .+.+|||||+ ++|....
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~----------~~~~~l~ 72 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGST--ESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQ----------GRFCTIF 72 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCc----------HHHHHHH
Confidence 458999999999999999999997532 2222 23344444455566664 6677999999 4444332
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH--cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDIN-IANFIYE--SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
..+++.||++|+|+|++++.++++.. |+..+.. .+.|+++|+||+|+....... .++.+.... ..+++++++|
T Consensus 73 -~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~--~~~~~~~a~-~~~~~~~e~S 148 (189)
T cd04121 73 -RSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVA--TEQAQAYAE-RNGMTFFEVS 148 (189)
T ss_pred -HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCC--HHHHHHHHH-HcCCEEEEec
Confidence 36789999999999999998888864 5555554 478999999999996432211 111222222 2346899999
Q ss_pred ccCCCCHHHHHHHHHHHHhh
Q psy17089 335 AIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~~ 354 (419)
|++|.||+++|+++.+.+..
T Consensus 149 Ak~g~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 149 PLCNFNITESFTELARIVLM 168 (189)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999986654
No 45
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=2.7e-22 Score=188.76 Aligned_cols=165 Identities=21% Similarity=0.256 Sum_probs=123.8
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEE-eCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY-NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~ 261 (419)
..|+++|.||||||||+|+|++.. ..++++|+||..+....+.+ ++.++.+|||||+.+....... .....+++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~g----Lg~~flrh 233 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAG----LGHRFLKH 233 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcccc----HHHHHHHH
Confidence 479999999999999999999875 46789999999999998888 5678999999999754421111 12445678
Q ss_pred HhhcCEEEEEecCCCCCCHHHHH-HHHHHHH-----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 262 ILEANVVILLLDAQQNISAQDIN-IANFIYE-----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 262 ~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
+++++++++|+|+++..+.++.+ |.+.+.. .++|+++|+||+|+.+...... ......... ...+++++||
T Consensus 234 ie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~--~~~~~~~~~-~~~~i~~iSA 310 (335)
T PRK12299 234 IERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEERE--KRAALELAA-LGGPVFLISA 310 (335)
T ss_pred hhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHH--HHHHHHHHh-cCCCEEEEEc
Confidence 89999999999999766666654 4444443 3689999999999975443221 111111111 2368999999
Q ss_pred cCCCCHHHHHHHHHHHHhhc
Q psy17089 336 IKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~~ 355 (419)
+++.|++++++++.+.+.+.
T Consensus 311 ktg~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 311 VTGEGLDELLRALWELLEEA 330 (335)
T ss_pred CCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999887653
No 46
>KOG0094|consensus
Probab=99.90 E-value=2.1e-22 Score=166.45 Aligned_cols=154 Identities=21% Similarity=0.220 Sum_probs=126.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.|++++|+.+||||||+++++-.. +.....+++..|+....+.+.|+ ++++|||+||+ +|+..+..++
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~-fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQE---------RFrslipsY~ 92 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDK-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLIPSYI 92 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhh-hcccccceeeeEEEEEEEEEcCcEEEEEEEecccHH---------HHhhhhhhhc
Confidence 699999999999999999999653 33444567889999999999886 45699999999 9999999999
Q ss_pred HhCCEEEEEEeCCCC--CCHhHHHHHHHHHhcC---CCEEEEEeccCCCCCCcc----hhH--HhcCCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQG--LVEQDKLITNFLRKSG---QPIVLVINKSENINSSIS----LDF--YELGIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~--~~~~~~~~~~~l~~~~---~p~ilv~NK~Dl~~~~~~----~~~--~~~~~~~~~~vSa~~~~ 149 (419)
+++.++++|+|.++. +.....|+....++++ .-++||+||.||.+.+.. .+. ..++. .++++||+.|+
T Consensus 93 Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a-~f~etsak~g~ 171 (221)
T KOG0094|consen 93 RDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNA-EFIETSAKAGE 171 (221)
T ss_pred cCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCc-EEEEecccCCC
Confidence 999999999997754 4445577666666543 457899999999998876 111 24555 88999999999
Q ss_pred CHHHHHHHHHHhcCCcch
Q psy17089 150 GIKNFLENILTIELPYKK 167 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~~~~ 167 (419)
|++++|..|...+++.+.
T Consensus 172 NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 172 NVKQLFRRIAAALPGMEV 189 (221)
T ss_pred CHHHHHHHHHHhccCccc
Confidence 999999999999998754
No 47
>PRK00089 era GTPase Era; Reviewed
Probab=99.89 E-value=4e-22 Score=186.62 Aligned_cols=164 Identities=28% Similarity=0.415 Sum_probs=134.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
..|+|+|++|||||||+|+|+|.+.+.+++.+.+|++...+....++.++.+|||||+.+.. ..+.+.+.......+.+
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~-~~l~~~~~~~~~~~~~~ 84 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK-RALNRAMNKAAWSSLKD 84 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch-hHHHHHHHHHHHHHHhc
Confidence 36999999999999999999999877788888899987777666667899999999987543 33445566677778999
Q ss_pred CCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCC-Ccc---hhHH--hcCCCCeEEEeeccCCCHHHHHH
Q psy17089 83 SDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINS-SIS---LDFY--ELGIGNPHIISALYGNGIKNFLE 156 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~-~~~---~~~~--~~~~~~~~~vSa~~~~~v~~l~~ 156 (419)
+|++++|+|+.+.+...+.++.+.++..+.|+++|+||+|+... ... .+.+ ..+..+++++||+++.|++++++
T Consensus 85 ~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~ 164 (292)
T PRK00089 85 VDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLD 164 (292)
T ss_pred CCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHH
Confidence 99999999999877888888888888778999999999999844 322 1222 23456889999999999999999
Q ss_pred HHHHhcCCcch
Q psy17089 157 NILTIELPYKK 167 (419)
Q Consensus 157 ~i~~~~~~~~~ 167 (419)
.+.+.+++.+.
T Consensus 165 ~L~~~l~~~~~ 175 (292)
T PRK00089 165 VIAKYLPEGPP 175 (292)
T ss_pred HHHHhCCCCCC
Confidence 99999987653
No 48
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.89 E-value=1e-22 Score=172.67 Aligned_cols=149 Identities=23% Similarity=0.313 Sum_probs=115.0
Q ss_pred HHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhc--CCCEEEEEeccCCCCCCcc---hhHHhcCC-CCeEEEeeccCCC
Q psy17089 77 KQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKS--GQPIVLVINKSENINSSIS---LDFYELGI-GNPHIISALYGNG 150 (419)
Q Consensus 77 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~--~~p~ilv~NK~Dl~~~~~~---~~~~~~~~-~~~~~vSa~~~~~ 150 (419)
...+.++|++++|+|++.+....+..+.+.+... ++|+++|+||+|+...... ...+.... ...+++||+.+.|
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~ 82 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFG 82 (157)
T ss_pred hHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeecccccc
Confidence 4568899999999999988777778888888753 4899999999999765433 22222222 1257899999999
Q ss_pred HHHHHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe
Q psy17089 151 IKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK 230 (419)
Q Consensus 151 v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 230 (419)
++++++.+.+.+.... .....+|+++|.||||||||+|+|.+.....+++.+|+|+...... .+.
T Consensus 83 ~~~L~~~l~~~~~~~~------------~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~---~~~ 147 (157)
T cd01858 83 KGSLIQLLRQFSKLHS------------DKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYIT---LMK 147 (157)
T ss_pred HHHHHHHHHHHHhhhc------------cccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEE---cCC
Confidence 9999999976532110 0245789999999999999999999998889999999998754332 245
Q ss_pred eEEEEeCCCC
Q psy17089 231 KYILIDTAGI 240 (419)
Q Consensus 231 ~~~liDtpG~ 240 (419)
.+.++||||+
T Consensus 148 ~~~liDtPGi 157 (157)
T cd01858 148 RIYLIDCPGV 157 (157)
T ss_pred CEEEEECcCC
Confidence 6899999995
No 49
>KOG0092|consensus
Probab=99.89 E-value=7.3e-23 Score=169.35 Aligned_cols=153 Identities=20% Similarity=0.136 Sum_probs=117.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
+||+++|+.|||||||+-|+.... +.....+++..-+....+.+++ .++.||||+|++ ++.....+++
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~-F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQE---------Ry~slapMYy 75 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQ-FHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQE---------RYHSLAPMYY 75 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCc-cccccccccccEEEEEEEEeCCcEEEEEEEEcCCcc---------ccccccccee
Confidence 699999999999999999998653 2222344555555555666666 567799999999 7778889999
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHhc---CCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRKS---GQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~~---~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
++|+++|+|+|.++..+... +.|.+.|++. ++-+.||+||+|+...+.+ .++. ..|+ .++++||++|.|
T Consensus 76 RgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gl-l~~ETSAKTg~N 154 (200)
T KOG0092|consen 76 RGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGL-LFFETSAKTGEN 154 (200)
T ss_pred cCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCC-EEEEEecccccC
Confidence 99999999999987444333 4444555542 3346779999999997765 3444 4455 889999999999
Q ss_pred HHHHHHHHHHhcCCcc
Q psy17089 151 IKNFLENILTIELPYK 166 (419)
Q Consensus 151 v~~l~~~i~~~~~~~~ 166 (419)
++++|..|.+.+|+..
T Consensus 155 v~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 155 VNEIFQAIAEKLPCSD 170 (200)
T ss_pred HHHHHHHHHHhccCcc
Confidence 9999999999998764
No 50
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.89 E-value=1.3e-22 Score=174.58 Aligned_cols=157 Identities=18% Similarity=0.174 Sum_probs=109.7
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|||||||+.++.... + ...+..|..+.....+..++. .+.+|||+|+.++. ..+ ..
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~-f-~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~----------~~~-~~ 68 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK-F-PTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYN----------RLR-PL 68 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC-C-CCCCCCcceeeeEEEEEECCEEEEEEEEECCCCcccc----------ccc-hh
Confidence 689999999999999999999764 2 223333333333344455554 66789999995443 222 24
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEEcccCCChhh--------HHHHHHHHHHHcCCCCCC
Q psy17089 261 SILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQ--------RKIIKNNIKKKLNFLSFA 328 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~ 328 (419)
+++.||++|+|+|+++..++++. .|+..+.. .+.|+++|+||+|+.+... .....++........+..
T Consensus 69 ~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~ 148 (176)
T cd04133 69 SYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAA 148 (176)
T ss_pred hcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCC
Confidence 78999999999999999998885 46666654 4789999999999954321 001111222222222223
Q ss_pred cEEEEeccCCCCHHHHHHHHHHHH
Q psy17089 329 MFNFISAIKLNNINSFMESINHVY 352 (419)
Q Consensus 329 ~~~~~SA~~g~gv~~l~~~i~~~~ 352 (419)
+++++||++|.||+++|+.+.+.+
T Consensus 149 ~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 149 AYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred EEEECCCCcccCHHHHHHHHHHHH
Confidence 699999999999999999999865
No 51
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.89 E-value=4.2e-22 Score=170.89 Aligned_cols=155 Identities=15% Similarity=0.123 Sum_probs=103.8
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+.++|+++|.+|||||||+++|...... ...|+++.+. ..+...+..+.+|||||+ +++... ...
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~--~~~~t~g~~~--~~~~~~~~~~~l~Dt~G~----------~~~~~~-~~~ 72 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV--TTIPTVGFNV--ETVTYKNVKFNVWDVGGQ----------DKIRPL-WRH 72 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc--cccCCcccce--EEEEECCEEEEEEECCCC----------HHHHHH-HHH
Confidence 4589999999999999999999865432 2233333332 234456778999999999 333322 235
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHH-H---cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIY-E---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~-~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
+++.||++++|+|+++..+..+. .++..+. + .+.|+++|+||+|+......++..+.+..........+++++||
T Consensus 73 ~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA 152 (168)
T cd04149 73 YYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCA 152 (168)
T ss_pred HhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeC
Confidence 78999999999999987555443 3333332 2 46899999999998643222222222211001112247899999
Q ss_pred cCCCCHHHHHHHHHH
Q psy17089 336 IKLNNINSFMESINH 350 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~ 350 (419)
++|.|++++|++|.+
T Consensus 153 k~g~gv~~~~~~l~~ 167 (168)
T cd04149 153 TSGDGLYEGLTWLSS 167 (168)
T ss_pred CCCCChHHHHHHHhc
Confidence 999999999998864
No 52
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.89 E-value=2.8e-22 Score=172.63 Aligned_cols=156 Identities=19% Similarity=0.166 Sum_probs=109.5
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
.+||+++|.+|||||||++++.+... ...+..+..+.....+..++. .+.+|||||+. +|.... .
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~l~-~ 68 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSF--PDYHDPTIEDAYKQQARIDNEPALLDILDTAGQA----------EFTAMR-D 68 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--CCCcCCcccceEEEEEEECCEEEEEEEEeCCCch----------hhHHHh-H
Confidence 37999999999999999999997642 223333333333444555554 57779999993 333222 3
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEEcccCCChhhHH-HHHHHHHHHcCCCCCCcEEEE
Q psy17089 260 KSILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 333 (419)
.+++.+|++++|+|++++.+++... ++..+.. .+.|+++|+||+|+....... +....+.+ ..+++++++
T Consensus 69 ~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~----~~~~~~~e~ 144 (172)
T cd04141 69 QYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAR----EFNCPFFET 144 (172)
T ss_pred HHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHH----HhCCEEEEE
Confidence 5788999999999999998888764 3344433 468999999999986432221 11111221 124699999
Q ss_pred eccCCCCHHHHHHHHHHHHhh
Q psy17089 334 SAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~ 354 (419)
||++|.|++++|+++.+.+..
T Consensus 145 Sa~~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 145 SAALRHYIDDAFHGLVREIRR 165 (172)
T ss_pred ecCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999987654
No 53
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.89 E-value=1.9e-22 Score=174.21 Aligned_cols=156 Identities=16% Similarity=0.113 Sum_probs=107.9
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|||||||++++..... ...+.++..+.....+..++ ..+.+|||||+.+.. ..+ ..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~-~~ 68 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD----------RLR-PL 68 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchh----------hhh-hh
Confidence 6899999999999999999997642 33444444443344455556 456789999994432 222 24
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHH--HHHHHHH--cCCcEEEEEEcccCCChhhHHH----------HHHHHHHHcCCCC
Q psy17089 261 SILEANVVILLLDAQQNISAQDIN--IANFIYE--SGRSLIVCVNKWDSIIHNQRKI----------IKNNIKKKLNFLS 326 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~--~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~----------~~~~~~~~~~~~~ 326 (419)
+++.+|++|+|+|++++.++++.. |+..+.. .+.|+++|+||+|+.+.....+ ..++..+.....+
T Consensus 69 ~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~ 148 (175)
T cd01874 69 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLK 148 (175)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhC
Confidence 788999999999999988777753 5555543 4689999999999864322110 0111111112223
Q ss_pred CCcEEEEeccCCCCHHHHHHHHHHH
Q psy17089 327 FAMFNFISAIKLNNINSFMESINHV 351 (419)
Q Consensus 327 ~~~~~~~SA~~g~gv~~l~~~i~~~ 351 (419)
..+++++||++|.|++++|+.++..
T Consensus 149 ~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 149 AVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHH
Confidence 3689999999999999999998874
No 54
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=1.1e-21 Score=188.12 Aligned_cols=171 Identities=18% Similarity=0.188 Sum_probs=126.2
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC-eeEEEEeCCCCCCCCcchHHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN-KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~ 261 (419)
..|+|+|.||||||||+|+|++.. ..++++|+||+.+....+.+.+ ..++++||||+.+...... ......+.+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~----~Lg~~~l~~ 234 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGA----GLGIRFLKH 234 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchh----hHHHHHHHH
Confidence 369999999999999999999876 4789999999999999888865 5699999999976442111 112344578
Q ss_pred HhhcCEEEEEecCC---CCCCHHH-HHHHHHHHH-----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEE
Q psy17089 262 ILEANVVILLLDAQ---QNISAQD-INIANFIYE-----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 262 ~~~ad~~i~v~d~~---~~~~~~~-~~~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (419)
+..+|++++|+|++ ......+ ..+++.+.. .++|+++|+||+|+............+.+.+.. ..++++
T Consensus 235 i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~--~~~Vi~ 312 (390)
T PRK12298 235 LERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGW--EGPVYL 312 (390)
T ss_pred HHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCC--CCCEEE
Confidence 99999999999988 2222333 345555554 368999999999997654433333333332221 137899
Q ss_pred EeccCCCCHHHHHHHHHHHHhhcCCCCC
Q psy17089 333 ISAIKLNNINSFMESINHVYDSSIIHLS 360 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~~~~~~~ 360 (419)
+||+++.|+++|++.|.+.+++....++
T Consensus 313 ISA~tg~GIdeLl~~I~~~L~~~~~~~~ 340 (390)
T PRK12298 313 ISAASGLGVKELCWDLMTFIEENPREEA 340 (390)
T ss_pred EECCCCcCHHHHHHHHHHHhhhCcccCC
Confidence 9999999999999999999887654433
No 55
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.89 E-value=2.6e-22 Score=173.91 Aligned_cols=159 Identities=15% Similarity=0.193 Sum_probs=110.7
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
..+||+++|.+|||||||++++..... ...+.++..+.....+..++. .+.+|||+|+ ++|...+.
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f--~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~----------e~~~~~~~ 71 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGS----------PYYDNVRP 71 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC--CCccCCceeeeeEEEEEECCEEEEEEEEECCCc----------hhhHhhhh
Confidence 458999999999999999999997642 233333333333344555554 5777999999 44433332
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEEcccCCChhh----------HHHHHHHHHHHcCC
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQ----------RKIIKNNIKKKLNF 324 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~ 324 (419)
.+++.||++++|+|++++.+++.. .|+..+.+ .+.|+++|+||+||.+... .....++..+....
T Consensus 72 -~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~ 150 (182)
T cd04172 72 -LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQ 150 (182)
T ss_pred -hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHH
Confidence 578999999999999999888874 46566554 4689999999999853210 00111222222222
Q ss_pred CCCCcEEEEeccCCCC-HHHHHHHHHHHH
Q psy17089 325 LSFAMFNFISAIKLNN-INSFMESINHVY 352 (419)
Q Consensus 325 ~~~~~~~~~SA~~g~g-v~~l~~~i~~~~ 352 (419)
.+.++++++||++|.| |+++|..+.+..
T Consensus 151 ~~~~~~~E~SAk~~~n~v~~~F~~~~~~~ 179 (182)
T cd04172 151 IGAATYIECSALQSENSVRDIFHVATLAC 179 (182)
T ss_pred cCCCEEEECCcCCCCCCHHHHHHHHHHHH
Confidence 3334899999999998 999999988753
No 56
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.89 E-value=4.2e-22 Score=170.21 Aligned_cols=155 Identities=18% Similarity=0.156 Sum_probs=108.7
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
.+||+++|.+|+|||||++++++.. ....+.+++.+........++. .+.+|||||+.+.. . ...
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~-~~~ 68 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSY--FVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFS----------A-MRE 68 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCC--CCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchh----------H-HHH
Confidence 3799999999999999999999764 3445555655554555556554 57789999984432 1 223
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
.+++.+|++++|+|+++..+++.. .++..+.. .+.|+++|+||+|+....... .+...+.... .+.+++++|
T Consensus 69 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~--~~~~~~~~~~-~~~~~~~~S 145 (164)
T cd04145 69 QYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVS--REEGQELARK-LKIPYIETS 145 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceec--HHHHHHHHHH-cCCcEEEee
Confidence 577899999999999987666554 23333332 478999999999996532211 1111111112 235899999
Q ss_pred ccCCCCHHHHHHHHHHHH
Q psy17089 335 AIKLNNINSFMESINHVY 352 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~ 352 (419)
|++|.|++++|+.+.+.+
T Consensus 146 a~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 146 AKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred CCCCCCHHHHHHHHHHhh
Confidence 999999999999998754
No 57
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.89 E-value=3.7e-21 Score=162.43 Aligned_cols=170 Identities=25% Similarity=0.298 Sum_probs=133.3
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCc-eeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGEN-RVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
....||++|++|||||||+|+|++.. .+.++..||.|+...... ++ ..+.++|.||..--....+..|+|. ....
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~--~~-~~~~lVDlPGYGyAkv~k~~~e~w~-~~i~ 98 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFE--VD-DELRLVDLPGYGYAKVPKEVKEKWK-KLIE 98 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEE--ec-CcEEEEeCCCcccccCCHHHHHHHH-HHHH
Confidence 55789999999999999999999954 588999999999764433 32 3489999999976655555566664 2233
Q ss_pred HHHhh---cCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCc--EEEEe
Q psy17089 260 KSILE---ANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAM--FNFIS 334 (419)
Q Consensus 260 ~~~~~---ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~S 334 (419)
.|++. -.++++++|+..+....|.++++++...++|+++|+||+|.+...........+.+.+....... ++..|
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~s 178 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFS 178 (200)
T ss_pred HHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEe
Confidence 45543 57889999999999999999999999999999999999999987666555555555444333222 88899
Q ss_pred ccCCCCHHHHHHHHHHHHhh
Q psy17089 335 AIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~~ 354 (419)
+.++.|+++|...|.+.+..
T Consensus 179 s~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 179 SLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred cccccCHHHHHHHHHHHhhc
Confidence 99999999999999887653
No 58
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.89 E-value=2.9e-22 Score=171.05 Aligned_cols=153 Identities=18% Similarity=0.197 Sum_probs=108.4
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|||||||++++.+.. ....+.+++.+.....+..++. .+.+|||||+.++. ... ..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~-~~ 68 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFT----------AMR-DL 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccc----------hHH-HH
Confidence 699999999999999999999764 2334445555555555666664 56679999994443 222 25
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
+++.+|++++|+|+++..++++. .++..+.+ .+.|+++|+||+|+.+.... ......+.+.+ ..+++++|
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~S 144 (163)
T cd04136 69 YIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQW----GCPFYETS 144 (163)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHc----CCeEEEec
Confidence 77899999999999987766654 34444543 36899999999999653221 11112222222 26899999
Q ss_pred ccCCCCHHHHHHHHHHHH
Q psy17089 335 AIKLNNINSFMESINHVY 352 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~ 352 (419)
|++|.|++++|+++.+.+
T Consensus 145 a~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 145 AKSKINVDEVFADLVRQI 162 (163)
T ss_pred CCCCCCHHHHHHHHHHhc
Confidence 999999999999998643
No 59
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.89 E-value=1.3e-21 Score=169.65 Aligned_cols=159 Identities=25% Similarity=0.312 Sum_probs=116.9
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCc-eeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGEN-RVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
.+.++|+++|.+|+|||||+|+|.+.. ...+++.+|+|.+..... .+ ..+.+|||||+..........+.|... .
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~~-~~~~liDtpG~~~~~~~~~~~~~~~~~-~ 91 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE--VN-DGFRLVDLPGYGYAKVSKEEKEKWQKL-I 91 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEE--eC-CcEEEEeCCCCccccCChhHHHHHHHH-H
Confidence 466899999999999999999999874 445667788887654332 22 479999999985543221222333211 1
Q ss_pred HHHHh---hcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCC-CCcEEEEe
Q psy17089 259 LKSIL---EANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLS-FAMFNFIS 334 (419)
Q Consensus 259 ~~~~~---~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~S 334 (419)
..+++ .+|++++|+|++++.+..+..+++.+...++|+++|+||+|+..........+++++.+.... ..+++++|
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~S 171 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFS 171 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEE
Confidence 13333 468999999999999999988888888889999999999999876655555566666665442 34899999
Q ss_pred ccCCCCHH
Q psy17089 335 AIKLNNIN 342 (419)
Q Consensus 335 A~~g~gv~ 342 (419)
|++|.|++
T Consensus 172 a~~g~gi~ 179 (179)
T TIGR03598 172 SLKKTGID 179 (179)
T ss_pred CCCCCCCC
Confidence 99999974
No 60
>KOG0098|consensus
Probab=99.89 E-value=2e-22 Score=165.18 Aligned_cols=159 Identities=18% Similarity=0.102 Sum_probs=121.8
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
-.+|+.++|+.|||||.|+.+++.+.. ..-...+...+.....+.++++ ++.+|||+|+ |.|+ ..+
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF-~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGq----------e~fr-sv~ 72 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRF-QPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQ----------ESFR-SVT 72 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCc-cccccceeeeeeceeEEEEcCceEEEEEEecCCc----------HHHH-HHH
Confidence 458999999999999999999998754 3334456667777777777776 5667999999 6665 445
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
..|++.|.++|||+|++++.++..+ .|+..++. .+..+++++||+||...... .++-.+.++...+..++++|
T Consensus 73 ~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~V---s~EEGeaFA~ehgLifmETS 149 (216)
T KOG0098|consen 73 RSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREV---SKEEGEAFAREHGLIFMETS 149 (216)
T ss_pred HHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccc---cHHHHHHHHHHcCceeehhh
Confidence 5899999999999999999888887 46655554 57889999999999655432 22222233333557889999
Q ss_pred ccCCCCHHHHHHHHHHHHhh
Q psy17089 335 AIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~~ 354 (419)
|++++||+|.|......+..
T Consensus 150 akt~~~VEEaF~nta~~Iy~ 169 (216)
T KOG0098|consen 150 AKTAENVEEAFINTAKEIYR 169 (216)
T ss_pred hhhhhhHHHHHHHHHHHHHH
Confidence 99999999999888876554
No 61
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.89 E-value=3.6e-22 Score=174.99 Aligned_cols=155 Identities=17% Similarity=0.196 Sum_probs=108.1
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHHHH
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~ 261 (419)
||+++|.+|||||||+++|.+... ...+++++.+........++. .+.+|||||+ ++|...+ ..+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~~-~~~ 67 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF--VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQ----------EEYTALR-DQW 67 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchHhhEEEEEEECCEEEEEEEEECCCc----------hhhHHHH-HHH
Confidence 589999999999999999986542 233445544444444555555 4778999998 3333222 358
Q ss_pred HhhcCEEEEEecCCCCCCHHHH-HHHHHHHH------cCCcEEEEEEcccCCChhhHH-HHHHHHHHHcCCCCCCcEEEE
Q psy17089 262 ILEANVVILLLDAQQNISAQDI-NIANFIYE------SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 262 ~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 333 (419)
++.+|++++|+|+++..++... .++..+.. .+.|+++|+||+|+....... .....+... .+++++++
T Consensus 68 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~----~~~~~~e~ 143 (190)
T cd04144 68 IREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARR----LGCEFIEA 143 (190)
T ss_pred HHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHH----hCCEEEEe
Confidence 8999999999999998776664 34454443 368999999999996432211 111122222 23689999
Q ss_pred eccCCCCHHHHHHHHHHHHhhc
Q psy17089 334 SAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
||++|.|++++|..+.+.+...
T Consensus 144 SAk~~~~v~~l~~~l~~~l~~~ 165 (190)
T cd04144 144 SAKTNVNVERAFYTLVRALRQQ 165 (190)
T ss_pred cCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999876543
No 62
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.89 E-value=4e-22 Score=176.31 Aligned_cols=159 Identities=18% Similarity=0.117 Sum_probs=109.5
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEe-C--eeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN-N--KKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
+||+++|.+|||||||+++|++... .....++...+.....+.++ + ..+.+|||||+. +|... ..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~-~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~----------~~~~~-~~ 68 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIF-SQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE----------RFGGM-TR 68 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCch----------hhhhh-HH
Confidence 5899999999999999999997642 22223333444444455554 3 367789999993 33322 23
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH-------cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEE
Q psy17089 260 KSILEANVVILLLDAQQNISAQDIN-IANFIYE-------SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFN 331 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~-------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (419)
.+++.+|++++|+|++++.+++... |+..+.. .+.|+++|+||+|+.+.... ..+++.+.....+..+++
T Consensus 69 ~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~ 146 (201)
T cd04107 69 VYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAK--DGEQMDQFCKENGFIGWF 146 (201)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccccc--CHHHHHHHHHHcCCceEE
Confidence 6789999999999999987777653 3333332 46899999999999632111 111222222222336899
Q ss_pred EEeccCCCCHHHHHHHHHHHHhhc
Q psy17089 332 FISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 332 ~~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
++||++|.|++++|+++.+.+...
T Consensus 147 e~Sak~~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 147 ETSAKEGINIEEAMRFLVKNILAN 170 (201)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999877654
No 63
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.89 E-value=2.7e-21 Score=165.24 Aligned_cols=164 Identities=30% Similarity=0.462 Sum_probs=123.8
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~ 261 (419)
..+|+++|.+|+|||||+|++++.......+.+.++...........+..+.+|||||+....... ..+........
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~---~~~~~~~~~~~ 79 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL---GERMVKAAWSA 79 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHH---HHHHHHHHHHH
Confidence 478999999999999999999998766666777777766665555566789999999996654221 11122334467
Q ss_pred HhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCC-hhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCC
Q psy17089 262 ILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSII-HNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNN 340 (419)
Q Consensus 262 ~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 340 (419)
+..+|++++|+|++++.+..+..+...+...+.|+++|+||+|+.. ..........+. ......+++++|++++.|
T Consensus 80 ~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 80 LKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLK---ELGPFAEIFPISALKGEN 156 (168)
T ss_pred HHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHH---hccCCCceEEEEeccCCC
Confidence 8899999999999988666666777777777899999999999973 333333333333 233356899999999999
Q ss_pred HHHHHHHHHHH
Q psy17089 341 INSFMESINHV 351 (419)
Q Consensus 341 v~~l~~~i~~~ 351 (419)
++++++.|.+.
T Consensus 157 ~~~l~~~l~~~ 167 (168)
T cd04163 157 VDELLEEIVKY 167 (168)
T ss_pred hHHHHHHHHhh
Confidence 99999998764
No 64
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.89 E-value=7e-22 Score=171.49 Aligned_cols=156 Identities=24% Similarity=0.267 Sum_probs=109.8
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceee--------e------cCCCCccceeeeEeeEE-----eCeeEEEEeCCCCCCCC
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVI--------T------YDTPGTTRDSIKSLFEY-----NNKKYILIDTAGIRRRN 244 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~--------~------~~~~~~t~~~~~~~~~~-----~~~~~~liDtpG~~~~~ 244 (419)
+|+++|++|||||||+++|++..... . ....|++.......+.+ .+..+.+|||||+.++
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~- 80 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF- 80 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh-
Confidence 69999999999999999998642111 0 11224444433333333 2456789999999433
Q ss_pred cchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCC
Q psy17089 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNF 324 (419)
Q Consensus 245 ~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 324 (419)
. .....+++.+|++|+|+|++++.+.++...+..+...++|+++|+||+|+.+... ....+++.+.+..
T Consensus 81 ---------~-~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~ 149 (179)
T cd01890 81 ---------S-YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADP-ERVKQQIEDVLGL 149 (179)
T ss_pred ---------H-HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCH-HHHHHHHHHHhCC
Confidence 2 2334678899999999999998877777766666678899999999999864322 2223344444332
Q ss_pred CCCCcEEEEeccCCCCHHHHHHHHHHHH
Q psy17089 325 LSFAMFNFISAIKLNNINSFMESINHVY 352 (419)
Q Consensus 325 ~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 352 (419)
...+++++||++|.|+++|++.+.+.+
T Consensus 150 -~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 150 -DPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred -CcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 223589999999999999999998764
No 65
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.89 E-value=9.5e-22 Score=171.89 Aligned_cols=161 Identities=30% Similarity=0.416 Sum_probs=124.8
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceee-----------------ecCCCCccceeeeEeeE--EeCeeEEEEeCCCCC
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVI-----------------TYDTPGTTRDSIKSLFE--YNNKKYILIDTAGIR 241 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~-----------------~~~~~~~t~~~~~~~~~--~~~~~~~liDtpG~~ 241 (419)
+.++|+++|+.++|||||+++|++..... .....+.|.+.....+. ..+..+.++||||+
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~- 80 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH- 80 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS-
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc-
Confidence 34789999999999999999998543110 11234677777777777 78899999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHH-
Q psy17089 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKK- 320 (419)
Q Consensus 242 ~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~- 320 (419)
..|. ......++.+|++|+|+|+.++...+..+.+..+...++|+++|+||+|+. .....+..+++..
T Consensus 81 ---------~~f~-~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~-~~~~~~~~~~~~~~ 149 (188)
T PF00009_consen 81 ---------EDFI-KEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI-EKELEEIIEEIKEK 149 (188)
T ss_dssp ---------HHHH-HHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS-HHHHHHHHHHHHHH
T ss_pred ---------ccee-ecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch-hhhHHHHHHHHHHH
Confidence 4443 445577899999999999999999999999999999999999999999998 3333334444432
Q ss_pred ---HcCCCC--CCcEEEEeccCCCCHHHHHHHHHHHHh
Q psy17089 321 ---KLNFLS--FAMFNFISAIKLNNINSFMESINHVYD 353 (419)
Q Consensus 321 ---~~~~~~--~~~~~~~SA~~g~gv~~l~~~i~~~~~ 353 (419)
.....+ ..|++++||++|.|+++|++.+.+.++
T Consensus 150 l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 150 LLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred hccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 223222 478999999999999999999988765
No 66
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.89 E-value=4.1e-22 Score=170.39 Aligned_cols=153 Identities=18% Similarity=0.188 Sum_probs=108.6
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|||||||++++.... ....+++++.+.....+..++. .+.+|||||+.+.. ... ..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~-~~ 68 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT----------AMR-DL 68 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcchheEEEEEEECCEEEEEEEEECCCcccch----------hHH-HH
Confidence 689999999999999999998653 2344555655555555666655 45679999994432 222 25
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHH-HHHHHHHHHcCCCCCCcEEEEe
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S 334 (419)
+++.+|++++|+|.++..++++. +++..+.+ .+.|+++|+||+|+....... .....+.+.+ .++++++|
T Consensus 69 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~S 144 (164)
T cd04175 69 YMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW----GCAFLETS 144 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHh----CCEEEEee
Confidence 78899999999999987666654 34444443 468999999999996432211 1112222222 26899999
Q ss_pred ccCCCCHHHHHHHHHHHH
Q psy17089 335 AIKLNNINSFMESINHVY 352 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~ 352 (419)
|++|.|++++|.++.+.+
T Consensus 145 a~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 145 AKAKINVNEIFYDLVRQI 162 (164)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998754
No 67
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.89 E-value=5.9e-22 Score=168.15 Aligned_cols=154 Identities=22% Similarity=0.283 Sum_probs=115.2
Q ss_pred EEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHH--hh
Q psy17089 187 IVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI--LE 264 (419)
Q Consensus 187 l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~--~~ 264 (419)
++|.+|||||||+|++.+.. ..++.++++|.+.....+.+++..+.+|||||+.+..... .+... ...++ ..
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~~~~---~~~~~~~~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYS--EDEKV---ARDFLLGEK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCC--hhHHH---HHHHhcCCC
Confidence 57999999999999999875 5677889999998888888888899999999997654321 01111 11233 48
Q ss_pred cCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHHHH
Q psy17089 265 ANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSF 344 (419)
Q Consensus 265 ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l 344 (419)
+|++++|+|+++. .....++..+.+.++|+++|+||+|+.+........+.+...+ +.+++++||++|.|++++
T Consensus 75 ~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~iSa~~~~~~~~l 148 (158)
T cd01879 75 PDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELL----GVPVVPTSARKGEGIDEL 148 (158)
T ss_pred CcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhh----CCCeEEEEccCCCCHHHH
Confidence 9999999999875 3344556666778999999999999976543222222333222 368999999999999999
Q ss_pred HHHHHHHH
Q psy17089 345 MESINHVY 352 (419)
Q Consensus 345 ~~~i~~~~ 352 (419)
++.+.+..
T Consensus 149 ~~~l~~~~ 156 (158)
T cd01879 149 KDAIAELA 156 (158)
T ss_pred HHHHHHHh
Confidence 99988763
No 68
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=9.4e-22 Score=194.44 Aligned_cols=160 Identities=34% Similarity=0.450 Sum_probs=128.7
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (419)
++|+++|.+|||||||+|+|++...+.+++.+|+|.+.......+++..+.+|||||+.... ..+.......+..++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~~~ 78 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDD---DGFEKQIREQAELAI 78 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcc---hhHHHHHHHHHHHHH
Confidence 48999999999999999999998877888999999999988889999999999999997632 112222234455788
Q ss_pred hhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHH
Q psy17089 263 LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNIN 342 (419)
Q Consensus 263 ~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 342 (419)
..+|++++|+|++++.+..+..+.+++...++|+++|+||+|+.+... .. .++ . ..+...++++||++|.|++
T Consensus 79 ~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~--~~-~~~---~-~lg~~~~~~iSa~~g~gv~ 151 (435)
T PRK00093 79 EEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEA--DA-YEF---Y-SLGLGEPYPISAEHGRGIG 151 (435)
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchh--hH-HHH---H-hcCCCCCEEEEeeCCCCHH
Confidence 999999999999999888888888899889999999999999754211 11 111 1 1223357999999999999
Q ss_pred HHHHHHHHHH
Q psy17089 343 SFMESINHVY 352 (419)
Q Consensus 343 ~l~~~i~~~~ 352 (419)
++++.+.+..
T Consensus 152 ~l~~~I~~~~ 161 (435)
T PRK00093 152 DLLDAILEEL 161 (435)
T ss_pred HHHHHHHhhC
Confidence 9999998743
No 69
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.89 E-value=6.7e-22 Score=173.40 Aligned_cols=158 Identities=20% Similarity=0.172 Sum_probs=109.3
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecC-CCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYD-TPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
+||+++|.+|||||||++++.+... .... .+++..+.....+..++ ..+.+|||||+ +++... ..
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~-~~ 68 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAF-LNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQ----------ERFRSV-TH 68 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CccCcCCcccceeEEEEEEECCEEEEEEEEeCCCc----------HHHHHh-hH
Confidence 4899999999999999999997653 2223 33333344333445554 46778999998 333322 23
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
.+++.+|++++|+|+++..++++. .++..+.+ .+.|+++|+||+|+...... ......+... .+.+++++|
T Consensus 69 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~----~~~~~~e~S 144 (191)
T cd04112 69 AYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKE----YGVPFMETS 144 (191)
T ss_pred HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHH----cCCeEEEEe
Confidence 578899999999999987666554 34455544 36899999999999643211 1111222222 236899999
Q ss_pred ccCCCCHHHHHHHHHHHHhhcC
Q psy17089 335 AIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~~~~ 356 (419)
|++|.|++++|..+.+.+....
T Consensus 145 a~~~~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 145 AKTGLNVELAFTAVAKELKHRK 166 (191)
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999998876554
No 70
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.88 E-value=6.7e-22 Score=171.76 Aligned_cols=157 Identities=20% Similarity=0.183 Sum_probs=108.7
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEe------------CeeEEEEeCCCCCCCCcchH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN------------NKKYILIDTAGIRRRNKTFE 248 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~------------~~~~~liDtpG~~~~~~~~~ 248 (419)
..+||+++|.+|||||||++++.+... .....++.+.+.....+.+. ...+.+|||||+
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~-------- 73 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKF-NPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQ-------- 73 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCCh--------
Confidence 348999999999999999999987642 22223333334433333332 246788999998
Q ss_pred HHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhH-HHHHHHHHHHc
Q psy17089 249 VIEKFSVIKTLKSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKL 322 (419)
Q Consensus 249 ~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~ 322 (419)
+++... ...+++.+|++++|+|+++..++.+. .|+..+.. .+.|+++|+||+|+.+.... .+....+.+.+
T Consensus 74 --~~~~~~-~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~ 150 (180)
T cd04127 74 --ERFRSL-TTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKY 150 (180)
T ss_pred --HHHHHH-HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHc
Confidence 444322 33678999999999999988776665 34555544 36899999999999653221 11112222222
Q ss_pred CCCCCCcEEEEeccCCCCHHHHHHHHHHHHh
Q psy17089 323 NFLSFAMFNFISAIKLNNINSFMESINHVYD 353 (419)
Q Consensus 323 ~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~ 353 (419)
+++++++||++|.|++++|+.+.+.+.
T Consensus 151 ----~~~~~e~Sak~~~~v~~l~~~l~~~~~ 177 (180)
T cd04127 151 ----GIPYFETSAATGTNVEKAVERLLDLVM 177 (180)
T ss_pred ----CCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999999987653
No 71
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.88 E-value=8.8e-22 Score=169.90 Aligned_cols=155 Identities=18% Similarity=0.192 Sum_probs=105.2
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
..++|+++|.+|||||||+++|.+.......+..| .....+.+++..+.+|||||+ +.+... ...
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g----~~~~~~~~~~~~l~l~D~~G~----------~~~~~~-~~~ 77 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLG----FQIKTLEYEGYKLNIWDVGGQ----------KTLRPY-WRN 77 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccc----cceEEEEECCEEEEEEECCCC----------HHHHHH-HHH
Confidence 55899999999999999999999874322222222 223445566788999999999 333222 235
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHH----HcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIY----ESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~----~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
+++.+|++++|+|++++.+..+. .++..+. ..+.|+++|+||+|+.......+..+.+.........++++++||
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (173)
T cd04154 78 YFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSA 157 (173)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccC
Confidence 78899999999999987555443 2333222 257999999999999654332222222211101123468999999
Q ss_pred cCCCCHHHHHHHHHH
Q psy17089 336 IKLNNINSFMESINH 350 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~ 350 (419)
++|.|++++|+++..
T Consensus 158 ~~g~gi~~l~~~l~~ 172 (173)
T cd04154 158 VTGEGLLQGIDWLVD 172 (173)
T ss_pred CCCcCHHHHHHHHhc
Confidence 999999999998753
No 72
>KOG0087|consensus
Probab=99.88 E-value=1.8e-22 Score=169.41 Aligned_cols=160 Identities=18% Similarity=0.149 Sum_probs=126.0
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
+-.+||+++|+++||||-|+.+++..+ +.....+++..++....+..+++ +.+||||+|| |+|+ ..
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnE-F~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQ----------ERyr-Ai 79 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNE-FSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQ----------ERYR-AI 79 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccc-cCcccccceeEEEEeeceeecCcEEEEeeecccch----------hhhc-cc
Confidence 467899999999999999999999765 44556667777777777888776 6678999999 7776 34
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (419)
+..|++.|.++++|+|++...+++.. +|++.|++ .++++++|+||+||..... +..+-.+.++...+..++++
T Consensus 80 tSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lra---V~te~~k~~Ae~~~l~f~Et 156 (222)
T KOG0087|consen 80 TSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRA---VPTEDGKAFAEKEGLFFLET 156 (222)
T ss_pred cchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccc---cchhhhHhHHHhcCceEEEe
Confidence 45899999999999999999888875 68888886 5799999999999964221 11122223333445789999
Q ss_pred eccCCCCHHHHHHHHHHHHhh
Q psy17089 334 SAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~ 354 (419)
||..+.|+++.|..+...+..
T Consensus 157 SAl~~tNVe~aF~~~l~~I~~ 177 (222)
T KOG0087|consen 157 SALDATNVEKAFERVLTEIYK 177 (222)
T ss_pred cccccccHHHHHHHHHHHHHH
Confidence 999999999999888776554
No 73
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.88 E-value=3.8e-21 Score=169.43 Aligned_cols=170 Identities=25% Similarity=0.313 Sum_probs=124.1
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCc-eeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGEN-RVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
+..++|+++|.+|+|||||+|+|++.. ...+++.+|+|........ +.++.+|||||+..........+++. ...
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~-~~~ 97 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQ-KLI 97 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHH-HHH
Confidence 366899999999999999999999864 4556677777776443322 46899999999754332222233332 112
Q ss_pred HHHHh---hcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 259 LKSIL---EANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 259 ~~~~~---~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
..+++ .++++++++|++.+.+..+.++.+++...+.|+++|+||+|+.+....+...+.+...+... ..+++++||
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~-~~~~~~~Sa 176 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFG-DDEVILFSS 176 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc-CCceEEEEc
Confidence 23444 34788999999988877777777788778999999999999987655554545555554433 468999999
Q ss_pred cCCCCHHHHHHHHHHHHhh
Q psy17089 336 IKLNNINSFMESINHVYDS 354 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~ 354 (419)
++|.|++++++.+.+.+.+
T Consensus 177 ~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 177 LKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred CCCCCHHHHHHHHHHHhcC
Confidence 9999999999999887654
No 74
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.88 E-value=1e-21 Score=167.76 Aligned_cols=148 Identities=20% Similarity=0.266 Sum_probs=111.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCcee--cCCCCCCccceEEEEEEC-CeEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALV--ANYPGLTRDRHYGEGYIG-KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.|+++|++|||||||+|+|++...... ...+++|.+.......+. +..+.+|||||+. ++......++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~---------~~~~~~~~~~ 72 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE---------KFIKNMLAGA 72 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH---------HHHHHHHhhh
Confidence 589999999999999999997532111 224567888777777776 7899999999986 4555566778
Q ss_pred HhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCC-CEEEEEeccCCCCCCcc-------hhHHhc---CCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQDKLITNFLRKSGQ-PIVLVINKSENINSSIS-------LDFYEL---GIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~-p~ilv~NK~Dl~~~~~~-------~~~~~~---~~~~~~~vSa~~~~ 149 (419)
.++|++++|+|++++........+..++..+. |+++|+||+|+...... .+.+.. ...+++++||+++.
T Consensus 73 ~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (164)
T cd04171 73 GGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE 152 (164)
T ss_pred hcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCc
Confidence 89999999999987655555555555555555 99999999999765311 222221 22478999999999
Q ss_pred CHHHHHHHHHH
Q psy17089 150 GIKNFLENILT 160 (419)
Q Consensus 150 ~v~~l~~~i~~ 160 (419)
|++++++.+.+
T Consensus 153 ~v~~l~~~l~~ 163 (164)
T cd04171 153 GIEELKEYLDE 163 (164)
T ss_pred CHHHHHHHHhh
Confidence 99999998864
No 75
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.88 E-value=9.2e-22 Score=168.56 Aligned_cols=155 Identities=19% Similarity=0.163 Sum_probs=109.3
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|||||||++++.+... .....++.+.+.....+..++. .+.+|||||+ +++.. ....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~-~~~~ 70 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ----------ERFRT-ITSS 70 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCc----------HhHHH-HHHH
Confidence 7999999999999999999997643 2333445555555555555554 6788999998 33332 2235
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhHH-HHHHHHHHHcCCCCCCcEEEEec
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
+++.+|++++|+|++++.++... .++..+.. .+.|+++|+||+|+....... .....+.+. .+++++++||
T Consensus 71 ~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~Sa 146 (166)
T cd01869 71 YYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADE----LGIPFLETSA 146 (166)
T ss_pred HhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHH----cCCeEEEEEC
Confidence 78899999999999987666554 34444443 468999999999986543211 111122222 2468999999
Q ss_pred cCCCCHHHHHHHHHHHHh
Q psy17089 336 IKLNNINSFMESINHVYD 353 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~ 353 (419)
++|.|++++|..+.+.+.
T Consensus 147 ~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 147 KNATNVEQAFMTMAREIK 164 (166)
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 999999999999988664
No 76
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.88 E-value=1.5e-21 Score=183.54 Aligned_cols=161 Identities=23% Similarity=0.260 Sum_probs=121.4
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC-eeEEEEeCCCCCCCCcchHHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN-KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~ 261 (419)
..|+++|.||||||||+|+|++.. ..+++++++|..+....+.+.+ .++.+|||||+.+...... -.....+++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~----gLg~~flrh 232 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGA----GLGHRFLKH 232 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccc----cHHHHHHHH
Confidence 579999999999999999999874 4678999999999888888876 8999999999965432111 112344577
Q ss_pred HhhcCEEEEEecCCCC---CCHHHHH-HHHHHHH-----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEE
Q psy17089 262 ILEANVVILLLDAQQN---ISAQDIN-IANFIYE-----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 262 ~~~ad~~i~v~d~~~~---~~~~~~~-~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (419)
+.+++++++|+|+++. ...++.. +.+.+.. .++|+++|+||+|+..........+.+.+.+ ..++++
T Consensus 233 ierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~----~~~vi~ 308 (329)
T TIGR02729 233 IERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKAL----GKPVFP 308 (329)
T ss_pred HHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHc----CCcEEE
Confidence 8899999999999975 3344443 3343432 3689999999999976644433434443322 258999
Q ss_pred EeccCCCCHHHHHHHHHHHH
Q psy17089 333 ISAIKLNNINSFMESINHVY 352 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~ 352 (419)
+||+++.|++++++.+.+.+
T Consensus 309 iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 309 ISALTGEGLDELLYALAELL 328 (329)
T ss_pred EEccCCcCHHHHHHHHHHHh
Confidence 99999999999999998754
No 77
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.88 E-value=6.5e-22 Score=173.35 Aligned_cols=159 Identities=17% Similarity=0.157 Sum_probs=109.0
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
.+||+++|.+|||||||++++..... ...+..+..+.....+..++. .+.+|||||+ ++|...+.
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~----------e~~~~l~~- 69 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAF--PKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQ----------EEYDRLRT- 69 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCC--CcCCCCceEeeeEEEEEECCEEEEEEEEECCCc----------hhhhhhhh-
Confidence 48999999999999999999997542 223333333333333445554 5777999999 55543333
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHHH--HHHHHHH--cCCcEEEEEEcccCCChhhH-HHH---------HHHHHHHcCCC
Q psy17089 260 KSILEANVVILLLDAQQNISAQDIN--IANFIYE--SGRSLIVCVNKWDSIIHNQR-KII---------KNNIKKKLNFL 325 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~~--~~~~~~~--~~~~~iiv~NK~Dl~~~~~~-~~~---------~~~~~~~~~~~ 325 (419)
.+++.||++|+|+|+++..+++... |...+.. .+.|+++|+||.||.+.... ... .++........
T Consensus 70 ~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 149 (191)
T cd01875 70 LSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQI 149 (191)
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 5789999999999999988887763 4444443 47999999999999543211 100 01111122222
Q ss_pred CCCcEEEEeccCCCCHHHHHHHHHHHHh
Q psy17089 326 SFAMFNFISAIKLNNINSFMESINHVYD 353 (419)
Q Consensus 326 ~~~~~~~~SA~~g~gv~~l~~~i~~~~~ 353 (419)
+..+++++||++|.|++++|..+.+.+.
T Consensus 150 ~~~~~~e~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 150 HAVKYLECSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 3358999999999999999999997664
No 78
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.88 E-value=1.3e-21 Score=166.30 Aligned_cols=153 Identities=14% Similarity=0.134 Sum_probs=101.3
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (419)
+||+++|.+|||||||++++..... ....|++... ...+......+.+|||||+. ++... ...++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~--~~~~pt~g~~--~~~~~~~~~~~~l~D~~G~~----------~~~~~-~~~~~ 65 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEI--VTTIPTIGFN--VETVEYKNISFTVWDVGGQD----------KIRPL-WRHYF 65 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--cccCCCCCcc--eEEEEECCEEEEEEECCCCH----------hHHHH-HHHHh
Confidence 4899999999999999999975432 2223333222 23455567789999999993 33222 23678
Q ss_pred hhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccC
Q psy17089 263 LEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIK 337 (419)
Q Consensus 263 ~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 337 (419)
+.||++++|+|+++..+..+. +++..+.. .+.|+++|+||+|+.+.....++...+...........++++||++
T Consensus 66 ~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~ 145 (159)
T cd04150 66 QNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATS 145 (159)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCC
Confidence 999999999999986554443 23333322 3589999999999964332222222221000011234678999999
Q ss_pred CCCHHHHHHHHHH
Q psy17089 338 LNNINSFMESINH 350 (419)
Q Consensus 338 g~gv~~l~~~i~~ 350 (419)
|.|++++|++|.+
T Consensus 146 g~gv~~~~~~l~~ 158 (159)
T cd04150 146 GDGLYEGLDWLSN 158 (159)
T ss_pred CCCHHHHHHHHhc
Confidence 9999999998863
No 79
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.88 E-value=5.8e-22 Score=171.33 Aligned_cols=156 Identities=14% Similarity=0.174 Sum_probs=107.5
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|||||||++++.+.. + ...+.++..+.....+..++. .+.+|||||+ ++|..... .
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~-f-~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~----------~~~~~~~~-~ 68 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDC-Y-PETYVPTVFENYTASFEIDEQRIELSLWDTSGS----------PYYDNVRP-L 68 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-C-CCCcCCceEEEEEEEEEECCEEEEEEEEECCCc----------hhhhhcch-h
Confidence 689999999999999999999764 2 233333333333344555554 5678999999 44432222 5
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEEcccCCChhh----------HHHHHHHHHHHcCCCC
Q psy17089 261 SILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQ----------RKIIKNNIKKKLNFLS 326 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~ 326 (419)
+++.||++|+|+|++++.+++.. .|+..+.+ .+.|+++|+||+||.+... .....++..+.....+
T Consensus 69 ~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~ 148 (178)
T cd04131 69 CYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLG 148 (178)
T ss_pred hcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhC
Confidence 78999999999999999888873 46665654 4789999999999954200 0001112222222222
Q ss_pred CCcEEEEeccCCCC-HHHHHHHHHHH
Q psy17089 327 FAMFNFISAIKLNN-INSFMESINHV 351 (419)
Q Consensus 327 ~~~~~~~SA~~g~g-v~~l~~~i~~~ 351 (419)
..+++++||++|.| |+++|..+.+.
T Consensus 149 ~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 149 AEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred CCEEEECccCcCCcCHHHHHHHHHHH
Confidence 24799999999995 99999999885
No 80
>PRK11058 GTPase HflX; Provisional
Probab=99.88 E-value=1.2e-21 Score=189.97 Aligned_cols=161 Identities=25% Similarity=0.293 Sum_probs=121.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe-EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK-SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.|+|+|+|.+|||||||+|+|++...+ +.+.+++|+|+....+.+.+. .+.+|||||+....+....+.|. .+...+
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~-~tl~~~ 274 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFK-ATLQET 274 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHH-HHHHHh
Confidence 379999999999999999999987644 778889999999888888764 89999999996543344444554 356778
Q ss_pred HhCCEEEEEEeCCCCCCHhHH-HHHHHHH---hcCCCEEEEEeccCCCCCCcc-hhHHhcCCCCeEEEeeccCCCHHHHH
Q psy17089 81 IESDIIIFIVDGRQGLVEQDK-LITNFLR---KSGQPIVLVINKSENINSSIS-LDFYELGIGNPHIISALYGNGIKNFL 155 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~~-~~~~~l~---~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~vSa~~~~~v~~l~ 155 (419)
.+||++++|+|++++...... .+.+++. ..++|+++|+||+|+...... .+....+....+++||++|.|+++|+
T Consensus 275 ~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~~~~~~~~~~~~v~ISAktG~GIdeL~ 354 (426)
T PRK11058 275 RQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGIPLLF 354 (426)
T ss_pred hcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHHHHHHhcCCCceEEEeCCCCCCHHHHH
Confidence 999999999999876544432 2233343 347899999999999754221 22222333335889999999999999
Q ss_pred HHHHHhcCC
Q psy17089 156 ENILTIELP 164 (419)
Q Consensus 156 ~~i~~~~~~ 164 (419)
+.|.+.+..
T Consensus 355 e~I~~~l~~ 363 (426)
T PRK11058 355 QALTERLSG 363 (426)
T ss_pred HHHHHHhhh
Confidence 999987754
No 81
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.88 E-value=1.8e-21 Score=170.28 Aligned_cols=159 Identities=25% Similarity=0.324 Sum_probs=120.4
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeeec---------------CCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchH
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVITY---------------DTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFE 248 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 248 (419)
+|+++|.+|+|||||+|+|++....... ...+++.+.....+.+.+..+.+|||||+.+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~------ 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED------ 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHH------
Confidence 4899999999999999999876433211 1234555555555666678999999999832
Q ss_pred HHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCC---
Q psy17089 249 VIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFL--- 325 (419)
Q Consensus 249 ~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~--- 325 (419)
+. .....+++.+|++++|+|++++.......++..+...+.|+++|+||+|+..+.......+.+.+.+...
T Consensus 75 ----~~-~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (189)
T cd00881 75 ----FS-SEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFI 149 (189)
T ss_pred ----HH-HHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHcccccc
Confidence 22 2234577899999999999998887777888888778999999999999986544444444555444432
Q ss_pred ----------CCCcEEEEeccCCCCHHHHHHHHHHHHh
Q psy17089 326 ----------SFAMFNFISAIKLNNINSFMESINHVYD 353 (419)
Q Consensus 326 ----------~~~~~~~~SA~~g~gv~~l~~~i~~~~~ 353 (419)
...+++++||++|.|++++++.+.+.++
T Consensus 150 ~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 150 STKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred chhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 3578999999999999999999988753
No 82
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.88 E-value=8.2e-22 Score=168.49 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=107.5
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|||||||+++|.+... ...+.+++.+........++. .+.+|||||+.+.. .. ...
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~----------~~-~~~ 67 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHF--VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFS----------AM-RDQ 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCcccch----------HH-HHH
Confidence 4899999999999999999997652 233444554444445555554 66789999995443 12 225
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
+++.+|++++|+|++++.++++. .+...+.+ .+.|+++|+||+|+...... ......+.+.+ ..+++++|
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~S 143 (164)
T smart00173 68 YMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQW----GCPFLETS 143 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHc----CCEEEEee
Confidence 67889999999999987666554 23344333 36899999999999653221 11112222222 36899999
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q psy17089 335 AIKLNNINSFMESINHVYD 353 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~ 353 (419)
|++|.|++++|+.+.+.+.
T Consensus 144 a~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 144 AKERVNVDEAFYDLVREIR 162 (164)
T ss_pred cCCCCCHHHHHHHHHHHHh
Confidence 9999999999999987654
No 83
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.88 E-value=1.4e-21 Score=168.00 Aligned_cols=158 Identities=22% Similarity=0.177 Sum_probs=107.6
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHHHHH
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~ 261 (419)
||+++|.+|||||||++++.+.. +.....|.+..+.....+...+ ..+.+|||||+ ++|.... ..+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~~-~~~ 69 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV-FDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQ----------ERFKCIA-STY 69 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCh----------HHHHhhH-HHH
Confidence 79999999999999999999864 2222233334444444555555 36788999999 4444333 367
Q ss_pred HhhcCEEEEEecCCCCCCHHHH-HHHHHHHHc----CCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEecc
Q psy17089 262 ILEANVVILLLDAQQNISAQDI-NIANFIYES----GRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAI 336 (419)
Q Consensus 262 ~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~~----~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 336 (419)
++.+|++++|+|+++..+.... .|+..+.+. ..|+++|+||+|+.+........+........ ...+++++||+
T Consensus 70 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~ 148 (170)
T cd04108 70 YRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAE-MQAEYWSVSAL 148 (170)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHH-cCCeEEEEECC
Confidence 8999999999999986555543 455554432 35699999999996543321111111111111 13589999999
Q ss_pred CCCCHHHHHHHHHHHHhh
Q psy17089 337 KLNNINSFMESINHVYDS 354 (419)
Q Consensus 337 ~g~gv~~l~~~i~~~~~~ 354 (419)
+|.|++++|+.+.+.+.+
T Consensus 149 ~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 149 SGENVREFFFRVAALTFE 166 (170)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988754
No 84
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.88 E-value=1.9e-21 Score=168.81 Aligned_cols=159 Identities=13% Similarity=0.158 Sum_probs=109.1
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|||||||++++.+... .....|+...+.....+..++. .+.+|||+|+ ++|..... .
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f-~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~----------~~~~~~~~-~ 68 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEF-DEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQ----------REFINMLP-L 68 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCc----------hhHHHhhH-H
Confidence 4899999999999999999987642 2223333444554455666664 5678999999 44433322 5
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCCh---hhHHHHHHHHHHHcCCCCCCcEEEE
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIH---NQRKIIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (419)
+++.||++++|+|+++..++.+. .|+..+.. ...| ++|+||+|+... .......+...+... ..+++++++
T Consensus 69 ~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~-~~~~~~~e~ 146 (182)
T cd04128 69 VCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAK-AMKAPLIFC 146 (182)
T ss_pred HCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHH-HcCCEEEEE
Confidence 78999999999999998777775 35555544 2355 689999999632 111112222222222 223789999
Q ss_pred eccCCCCHHHHHHHHHHHHhhc
Q psy17089 334 SAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
||++|.|++++|+.+.+.+...
T Consensus 147 SAk~g~~v~~lf~~l~~~l~~~ 168 (182)
T cd04128 147 STSHSINVQKIFKIVLAKAFDL 168 (182)
T ss_pred eCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999877543
No 85
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.88 E-value=1.3e-21 Score=167.60 Aligned_cols=154 Identities=20% Similarity=0.182 Sum_probs=106.2
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCcc-ceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTT-RDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
+||+++|.+|||||||+++|.+... ...++++. .+.....+..++. .+.+|||||+ +++... ..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~-~~ 69 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQ----------ERFRAV-TR 69 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCcccceeEEEEEEEECCEEEEEEEEECCCc----------HHHHHH-HH
Confidence 7999999999999999999997642 23333332 3333334455554 6778999998 444322 23
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
.+++.+|++++|+|++++.+++.. .|+..+.. .+.|+++|+||+|+....... .++..+.... ...+++++||
T Consensus 70 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~--~~~~~~~~~~-~~~~~~e~Sa 146 (166)
T cd04122 70 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVT--YEEAKQFADE-NGLLFLECSA 146 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcC--HHHHHHHHHH-cCCEEEEEEC
Confidence 678999999999999998766665 34444433 468999999999996543211 1111111111 2368999999
Q ss_pred cCCCCHHHHHHHHHHHH
Q psy17089 336 IKLNNINSFMESINHVY 352 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~~ 352 (419)
++|.|++++|..+.+.+
T Consensus 147 ~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 147 KTGENVEDAFLETAKKI 163 (166)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999988765
No 86
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.88 E-value=3e-21 Score=164.55 Aligned_cols=154 Identities=22% Similarity=0.243 Sum_probs=105.5
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|||||||++++++... .....+.............++. .+.+|||||+ ++|... ...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~-~~~ 68 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGY-EPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQ----------ERFQTM-HAS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCc----------hhhhhh-hHH
Confidence 5899999999999999999997642 2112222222222223334443 6778999998 333322 236
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHHHc--CCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccC
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIYES--GRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIK 337 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 337 (419)
+++.+|++++|+|++++.++.+. .|+..+.+. +.|+++|+||+|+..... . ....+.+. ..++++++||++
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~-~-~~~~~~~~----~~~~~~~~Sa~~ 142 (161)
T cd04124 69 YYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVT-Q-KKFNFAEK----HNLPLYYVSAAD 142 (161)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHH-H-HHHHHHHH----cCCeEEEEeCCC
Confidence 78999999999999988776664 455666553 799999999999853211 1 11111111 236899999999
Q ss_pred CCCHHHHHHHHHHHHhh
Q psy17089 338 LNNINSFMESINHVYDS 354 (419)
Q Consensus 338 g~gv~~l~~~i~~~~~~ 354 (419)
|.|++++|+.+.+.+.+
T Consensus 143 ~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 143 GTNVVKLFQDAIKLAVS 159 (161)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999887654
No 87
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.88 E-value=7.6e-22 Score=168.94 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=102.8
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEE--eCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY--NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|||||||++++++... .. .+..+........... ....+.+|||||+.++. .. ...
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f-~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~-~~~ 68 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF-RE-SYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFP----------AM-QRL 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CC-CcCCcchheEEEEEEECCEEEEEEEEECCCCCcch----------HH-HHH
Confidence 6899999999999999999997642 22 2222222222222223 23467889999995432 11 225
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH------cCCcEEEEEEcccCCChhhHH-HHHHHHHHHcCCCCCCcEEE
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE------SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 332 (419)
+++.+|++++|+|++++.++... .++..+.+ .+.|+++|+||+|+....... .....+.. ...+++++
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~----~~~~~~~e 144 (165)
T cd04140 69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACAT----EWNCAFME 144 (165)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHH----HhCCcEEE
Confidence 67889999999999998777654 45555544 468999999999996532211 11111111 12368999
Q ss_pred EeccCCCCHHHHHHHHHHH
Q psy17089 333 ISAIKLNNINSFMESINHV 351 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~ 351 (419)
+||++|.|++++|++|.+.
T Consensus 145 ~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 145 TSAKTNHNVQELFQELLNL 163 (165)
T ss_pred eecCCCCCHHHHHHHHHhc
Confidence 9999999999999998753
No 88
>KOG0080|consensus
Probab=99.88 E-value=2.6e-22 Score=160.03 Aligned_cols=161 Identities=19% Similarity=0.194 Sum_probs=118.2
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
-.+||.++|.+|||||||+-++..... ......++..|+....+..+|. ++.||||+|| |+|+....
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~f-d~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGq----------ErFRtLTp 78 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTF-DDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQ----------ERFRTLTP 78 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhccc-CccCCceeeeeEEEEEEEEcCceEEEEEEeccch----------HhhhccCH
Confidence 458999999999999999999996532 2222223566777777777776 6667999999 78875544
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHHHHH-HHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEE
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDINIA-NFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~~~~-~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (419)
.|++.|.++|+|+|++.+.++..+.+| +.+.- .++-.++|+||+|...+ +..-.++ ...++....+-|+++
T Consensus 79 -SyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~--R~V~reE-G~kfAr~h~~LFiE~ 154 (209)
T KOG0080|consen 79 -SYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE--RVVDREE-GLKFARKHRCLFIEC 154 (209)
T ss_pred -hHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhc--ccccHHH-HHHHHHhhCcEEEEc
Confidence 899999999999999999888887544 33322 45667899999997432 1111112 222333345789999
Q ss_pred eccCCCCHHHHHHHHHHHHhhcC
Q psy17089 334 SAIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~~~ 356 (419)
|||+.+||+..|+.+.+.+.+.+
T Consensus 155 SAkt~~~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 155 SAKTRENVQCCFEELVEKIIETP 177 (209)
T ss_pred chhhhccHHHHHHHHHHHHhcCc
Confidence 99999999999999988766543
No 89
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.88 E-value=1e-21 Score=171.87 Aligned_cols=159 Identities=17% Similarity=0.107 Sum_probs=108.5
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
.||+++|.+|||||||+++|.+... ...+.++........+..++ ..+.+|||||+.... ..+. .
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~----------~l~~-~ 67 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYF--PQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFD----------RLRS-L 67 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--CCccCCcceeeeEEEEEECCEEEEEEEEECCCChhcc----------cccc-c
Confidence 3799999999999999999997643 22222222222223333444 467889999994432 1222 4
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEEcccCCChhhHHHH----------HHHHHHHcCCCC
Q psy17089 261 SILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQRKII----------KNNIKKKLNFLS 326 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~----------~~~~~~~~~~~~ 326 (419)
+++.+|++++|+|+++..+++.. .|+..+.. .+.|+++|+||+|+......... .++........+
T Consensus 68 ~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 147 (189)
T cd04134 68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRIN 147 (189)
T ss_pred cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 67899999999999998777765 35555554 47899999999999654322111 111112222333
Q ss_pred CCcEEEEeccCCCCHHHHHHHHHHHHhh
Q psy17089 327 FAMFNFISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 327 ~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
.++++++||++|.|++++|.++.+.+..
T Consensus 148 ~~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 148 ALRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred CCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 4689999999999999999999987764
No 90
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=3e-21 Score=188.07 Aligned_cols=169 Identities=19% Similarity=0.182 Sum_probs=124.3
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~ 261 (419)
...|+|+|.||||||||+|+|++.. ..++++|+||..+....+.+.+.++.+|||||+.+.... .+......+++
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~----g~gLg~~fLrh 233 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASE----GKGLGLDFLRH 233 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEECCeEEEEEECCCCccccch----hhHHHHHHHHH
Confidence 3689999999999999999999875 457899999999999999988899999999999654321 11122445678
Q ss_pred HhhcCEEEEEecCCCCC----CHHHHH-----HHHHH----------HHcCCcEEEEEEcccCCChhhHHHHHHHHHHHc
Q psy17089 262 ILEANVVILLLDAQQNI----SAQDIN-----IANFI----------YESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKL 322 (419)
Q Consensus 262 ~~~ad~~i~v~d~~~~~----~~~~~~-----~~~~~----------~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~ 322 (419)
+.++|++++|+|+++.. ..++.. +..+. ...++|+++|+||+|+.+.....+ .+...+
T Consensus 234 ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e---~l~~~l 310 (500)
T PRK12296 234 IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAE---FVRPEL 310 (500)
T ss_pred HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHH---HHHHHH
Confidence 89999999999997521 223322 21222 124689999999999965433222 222222
Q ss_pred CCCCCCcEEEEeccCCCCHHHHHHHHHHHHhhcCCCC
Q psy17089 323 NFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIHL 359 (419)
Q Consensus 323 ~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~ 359 (419)
... +.+++++||+++.|+++|+.+|.+.+...+...
T Consensus 311 ~~~-g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~~ 346 (500)
T PRK12296 311 EAR-GWPVFEVSAASREGLRELSFALAELVEEARAAE 346 (500)
T ss_pred HHc-CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccc
Confidence 222 368999999999999999999999988766443
No 91
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.88 E-value=1.6e-21 Score=174.32 Aligned_cols=161 Identities=16% Similarity=0.144 Sum_probs=110.6
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
..+||+++|.+|||||||+++|.+... ...+.++........+..++. .+.||||||+ +.|....
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F--~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~----------e~~~~~~- 78 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTAGLETEEQRVELSLWDTSGS----------PYYDNVR- 78 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCC--CCCcCCceeeeeEEEEEECCEEEEEEEEeCCCc----------hhhHHHH-
Confidence 568999999999999999999997642 223333322333334555554 5778999999 4444333
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEEcccCCChh----------hHHHHHHHHHHHcCC
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHN----------QRKIIKNNIKKKLNF 324 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~NK~Dl~~~~----------~~~~~~~~~~~~~~~ 324 (419)
..+++.||++++|+|+++..++... .|+..+.+ .+.|+++|+||+|+.... ......++..+....
T Consensus 79 ~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~ 158 (232)
T cd04174 79 PLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQ 158 (232)
T ss_pred HHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHH
Confidence 3588999999999999999888763 56666654 468999999999985320 001111122222222
Q ss_pred CCCCcEEEEeccCCC-CHHHHHHHHHHHHhh
Q psy17089 325 LSFAMFNFISAIKLN-NINSFMESINHVYDS 354 (419)
Q Consensus 325 ~~~~~~~~~SA~~g~-gv~~l~~~i~~~~~~ 354 (419)
.+..+++++||++|. ||+++|..+...+..
T Consensus 159 ~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 159 LGAEVYLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred cCCCEEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence 232369999999997 899999999887654
No 92
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.88 E-value=7.6e-22 Score=168.53 Aligned_cols=153 Identities=20% Similarity=0.175 Sum_probs=107.1
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|||||||++++..... ...+.++..+.....+..++. .+.+|||||+.++.. .. ..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~-~~ 68 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTF--IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS----------MR-DL 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccc----------hH-HH
Confidence 6899999999999999999997642 223334444444455555554 466899999855431 22 24
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHH-HHHHHHHHHcCCCCCCcEEEEe
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S 334 (419)
+++.+|++++|+|+++..+.++. .++..+.+ .++|+++|+||+|+....... .....+.+.+ +.+++++|
T Consensus 69 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~S 144 (163)
T cd04176 69 YIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEW----GCPFMETS 144 (163)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHh----CCEEEEec
Confidence 77899999999999998766664 34444443 479999999999986432211 1112222222 36899999
Q ss_pred ccCCCCHHHHHHHHHHHH
Q psy17089 335 AIKLNNINSFMESINHVY 352 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~ 352 (419)
|++|.|++++|.++.+.+
T Consensus 145 a~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 145 AKSKTMVNELFAEIVRQM 162 (163)
T ss_pred CCCCCCHHHHHHHHHHhc
Confidence 999999999999987643
No 93
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.88 E-value=1.3e-21 Score=174.67 Aligned_cols=157 Identities=15% Similarity=0.109 Sum_probs=110.5
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC---eeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN---KKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
+||+++|.+|||||||+++|.+.. +.....++.+.+.....+.+++ ..+.+|||||+. .+... ..
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~-~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~----------~~~~l-~~ 68 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEG-FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS----------IGGKM-LD 68 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH----------HHHHH-HH
Confidence 489999999999999999999764 2333344455566555566543 477889999983 33222 22
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH------cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEE
Q psy17089 260 KSILEANVVILLLDAQQNISAQDIN-IANFIYE------SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFN 331 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~------~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~ 331 (419)
.+++.||++|+|+|+++..++++.. |+..+.+ .+.|+++|+||+|+...... .+....+... .+.+++
T Consensus 69 ~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~----~~~~~~ 144 (215)
T cd04109 69 KYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQA----NGMESC 144 (215)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHH----cCCEEE
Confidence 5788999999999999987776653 4455543 23679999999999643221 1111222222 236899
Q ss_pred EEeccCCCCHHHHHHHHHHHHhhc
Q psy17089 332 FISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 332 ~~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
++||++|.|++++|+.+.+.+...
T Consensus 145 ~iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 145 LVSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999887653
No 94
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.88 E-value=8.9e-22 Score=169.82 Aligned_cols=156 Identities=15% Similarity=0.104 Sum_probs=106.0
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|||||||+.+++.... ...+..+..+.....+..++ ..+.+|||||+.+. .... ..
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~-~~ 68 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY----------DRLR-PL 68 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhh----------hhhh-hh
Confidence 6899999999999999999997532 23333344343333445555 46778999998333 2222 24
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEEcccCCChhh-HHH---------HHHHHHHHcCCCC
Q psy17089 261 SILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQ-RKI---------IKNNIKKKLNFLS 326 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~NK~Dl~~~~~-~~~---------~~~~~~~~~~~~~ 326 (419)
+++.+|++|+|+|++++.++++. .|+..+.. .+.|+++|+||+|+.+... .+. ..++..+.....+
T Consensus 69 ~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 148 (174)
T cd01871 69 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 148 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 78899999999999998877775 25554443 3689999999999954221 100 0111111222233
Q ss_pred CCcEEEEeccCCCCHHHHHHHHHHH
Q psy17089 327 FAMFNFISAIKLNNINSFMESINHV 351 (419)
Q Consensus 327 ~~~~~~~SA~~g~gv~~l~~~i~~~ 351 (419)
.++++++||++|.|++++|+.+.+.
T Consensus 149 ~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 149 AVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred CcEEEEecccccCCHHHHHHHHHHh
Confidence 3589999999999999999988753
No 95
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.88 E-value=1.9e-21 Score=166.41 Aligned_cols=155 Identities=21% Similarity=0.162 Sum_probs=106.2
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|||||||+++|.+... .....++++.+.....+..++ ..+.+|||||+ +++... ...
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~----------~~~~~~-~~~ 69 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSF-TSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQ----------ERYRTI-TTA 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCh----------HHHHHH-HHH
Confidence 6899999999999999999998753 221223333333333333433 46888999998 333322 236
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
+++.+|++++|+|+++..+.+.. .|+..+.. .+.|+++|+||+|+.+.... .+....+.+.+ +.+++++||
T Consensus 70 ~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~Sa 145 (165)
T cd01865 70 YYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQL----GFEFFEASA 145 (165)
T ss_pred HccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHc----CCEEEEEEC
Confidence 78999999999999987665554 34555543 36899999999999654321 11112222222 258999999
Q ss_pred cCCCCHHHHHHHHHHHHh
Q psy17089 336 IKLNNINSFMESINHVYD 353 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~ 353 (419)
++|.|++++|+.+.+.+.
T Consensus 146 ~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 146 KENINVKQVFERLVDIIC 163 (165)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987654
No 96
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.88 E-value=5.2e-21 Score=164.11 Aligned_cols=157 Identities=20% Similarity=0.242 Sum_probs=113.9
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEe---CeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN---NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
.|+++|.+|+|||||+|+|++... .....+++|.+.....+..+ +..+.+|||||+. .+.... ..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~----------~~~~~~-~~ 69 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNV-AAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE----------AFTNMR-AR 69 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccc-ccccCCCeEEeeccEEEecccCCcceEEEEeCCCcH----------HHHHHH-HH
Confidence 589999999999999999997653 23344566666554555553 6789999999983 232222 24
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHc-----CCCCCCcEEEEec
Q psy17089 261 SILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKL-----NFLSFAMFNFISA 335 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~SA 335 (419)
++..+|++++|+|++++...+....+..+...++|+++|+||+|+..... ......+.... ......+++++||
T Consensus 70 ~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (168)
T cd01887 70 GASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANP-ERVKNELSELGLQGEDEWGGDVQIVPTSA 148 (168)
T ss_pred HHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccH-HHHHHHHHHhhccccccccCcCcEEEeec
Confidence 66889999999999987766777777777788999999999999874321 11222222111 1123468999999
Q ss_pred cCCCCHHHHHHHHHHHHh
Q psy17089 336 IKLNNINSFMESINHVYD 353 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~ 353 (419)
++|.|++++++++.+...
T Consensus 149 ~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 149 KTGEGIDDLLEAILLLAE 166 (168)
T ss_pred ccCCCHHHHHHHHHHhhh
Confidence 999999999999987654
No 97
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.88 E-value=1.9e-21 Score=166.47 Aligned_cols=156 Identities=19% Similarity=0.135 Sum_probs=107.5
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
.+||+++|.+|+|||||+++|.+... .....+..+.+.....+..++ ..+.+|||||+ +.|.. ...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~----------~~~~~-~~~ 70 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTF-SERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQ----------ERFRT-ITQ 70 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCC-cccCCCccceEEEEEEEEECCEEEEEEEEECCCh----------HHHHH-HHH
Confidence 48999999999999999999987542 221222333344445555665 36788999998 44432 234
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
.+++.+|++++|+|++++.+++.. .++..+.. .+.|+++|+||+|+....... .+.........+..+++++||
T Consensus 71 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~e~Sa 148 (165)
T cd01864 71 SYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVL--FEEACTLAEKNGMLAVLETSA 148 (165)
T ss_pred HHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccC--HHHHHHHHHHcCCcEEEEEEC
Confidence 678899999999999998766664 45555543 468999999999996543211 111111222223357899999
Q ss_pred cCCCCHHHHHHHHHHH
Q psy17089 336 IKLNNINSFMESINHV 351 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~ 351 (419)
++|.|++++|+.+.+.
T Consensus 149 ~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 149 KESQNVEEAFLLMATE 164 (165)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999998864
No 98
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.88 E-value=3e-21 Score=167.54 Aligned_cols=155 Identities=15% Similarity=0.173 Sum_probs=107.2
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
..+||+++|.+|||||||++++..... ....|++..+ ...++.++..+.+|||||+ +++... ...
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~--~~~~pt~g~~--~~~~~~~~~~~~i~D~~Gq----------~~~~~~-~~~ 80 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIPTIGFN--VETVEYKNISFTVWDVGGQ----------DKIRPL-WRH 80 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC--ccccCCccee--EEEEEECCEEEEEEECCCC----------HHHHHH-HHH
Confidence 347999999999999999999986542 2222333322 2345667788999999998 344322 236
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCC----CCCcEE
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFL----SFAMFN 331 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~ 331 (419)
+++.+|++|+|+|+++..+..+. ..+..+.. .+.|+++|+||+|+.......++ .+.+... +...++
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~----~~~l~l~~~~~~~~~~~ 156 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI----TDKLGLHSLRQRHWYIQ 156 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHH----HHHhCccccCCCceEEE
Confidence 78999999999999987655443 23333321 46899999999998654433333 2233211 123467
Q ss_pred EEeccCCCCHHHHHHHHHHHHhh
Q psy17089 332 FISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 332 ~~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
++||++|+|++++|++|.+.+.+
T Consensus 157 ~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 157 STCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred eccCCCCCCHHHHHHHHHHHHhh
Confidence 89999999999999999887654
No 99
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.88 E-value=2e-21 Score=166.59 Aligned_cols=154 Identities=18% Similarity=0.155 Sum_probs=105.8
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|||||||+++|.+... .....+..+.+.....+..++ ..+.+|||||+ +.+... ...
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~-~~~ 68 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRF-VSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGH----------PEYLEV-RNE 68 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCeEEEEEEEECCcc----------HHHHHH-HHH
Confidence 5899999999999999999998753 223334444444444455544 46778999998 333322 235
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH--------cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcE
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE--------SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMF 330 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~--------~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~ 330 (419)
+++.+|++|+|+|++++.+.+.. .|+..+.. .+.|+++|+||+|+.+.... ......+.. . .+.++
T Consensus 69 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~-~~~~~ 144 (168)
T cd04119 69 FYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE---S-KGFKY 144 (168)
T ss_pred HhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH---H-cCCeE
Confidence 78899999999999987665554 34444432 35899999999999632211 111111111 1 23689
Q ss_pred EEEeccCCCCHHHHHHHHHHHH
Q psy17089 331 NFISAIKLNNINSFMESINHVY 352 (419)
Q Consensus 331 ~~~SA~~g~gv~~l~~~i~~~~ 352 (419)
+++||++|.|++++|+.+.+.+
T Consensus 145 ~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 145 FETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
No 100
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.88 E-value=1.9e-21 Score=166.43 Aligned_cols=155 Identities=17% Similarity=0.151 Sum_probs=109.8
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
.++|+++|.+|||||||+++|.+... .....++++.+.....+..++. .+.+|||||+ +++.... .
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~~-~ 70 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEF-NLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQ----------ERYRAIT-S 70 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCh----------HHHHHHH-H
Confidence 37999999999999999999997753 3334455555555556666664 6778999998 3333222 3
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
.+++.++++++|+|+++..+.++. +++..+.+ .+.|+++|+||+|+...... .+....+.. . ..++++++|
T Consensus 71 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~---~-~~~~~~~~S 146 (165)
T cd01868 71 AYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAE---K-NGLSFIETS 146 (165)
T ss_pred HHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHH---H-cCCEEEEEE
Confidence 577899999999999987666654 34444443 35899999999998643221 111111111 1 246899999
Q ss_pred ccCCCCHHHHHHHHHHHH
Q psy17089 335 AIKLNNINSFMESINHVY 352 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~ 352 (419)
|++|.|++++|+.+.+.+
T Consensus 147 a~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 147 ALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999988653
No 101
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.88 E-value=1.8e-21 Score=169.41 Aligned_cols=161 Identities=14% Similarity=0.116 Sum_probs=105.4
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEE---eCeeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY---NNKKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
+.++|+++|.+|||||||++++.+... ....|+.+.......+.. .+..+.+|||||+ +++...
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~----------~~~~~~- 68 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEF--VNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQ----------EKLRPL- 68 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCc--CCcCCccccceeEEEeeccCCCceEEEEEECCCc----------HhHHHH-
Confidence 358999999999999999999987643 223333333332223322 3468899999998 333322
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHHH-HHHHH----HHcCCcEEEEEEcccCCChhhHHHHHHHHH-HHcCCCCCCcEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDIN-IANFI----YESGRSLIVCVNKWDSIIHNQRKIIKNNIK-KKLNFLSFAMFN 331 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~----~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~ 331 (419)
...+++.+|++++|+|++++.+..+.. ++..+ ...++|+++|+||+|+............+. .........+++
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQ 148 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEE
Confidence 235688999999999999864444332 22222 235799999999999864322222211111 001111235689
Q ss_pred EEeccCCCCHHHHHHHHHHHHhh
Q psy17089 332 FISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 332 ~~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
++||++|.|+++++++|.+.+.+
T Consensus 149 ~~SA~~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 149 PACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred EeecccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999987753
No 102
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.88 E-value=2.8e-21 Score=189.78 Aligned_cols=155 Identities=28% Similarity=0.387 Sum_probs=122.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
++|+++|++|||||||+|+|++...+++++.+++|+|.....+.++|..+.+|||||+.+.. +............++.+
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~-~~ie~~gi~~~~~~~~~ 294 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD-DEVEKIGIERSREAIEE 294 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc-cHHHHHHHHHHHHHHHh
Confidence 58999999999999999999998777788999999999999999999999999999987432 22222223445668999
Q ss_pred CCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcchhHHhcCCCCeEEEeeccCCCHHHHHHHHHHhc
Q psy17089 83 SDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLENILTIE 162 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~vSa~~~~~v~~l~~~i~~~~ 162 (419)
+|++++|+|++++.+..+..++.. ..++|+++|+||+|+....... .....+++++||++|.|+++++++|.+.+
T Consensus 295 aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~---~~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 295 ADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE---EENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred CCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchhh---hccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 999999999987766555443333 3578999999999997644322 12223689999999999999999999865
Q ss_pred C
Q psy17089 163 L 163 (419)
Q Consensus 163 ~ 163 (419)
.
T Consensus 370 ~ 370 (449)
T PRK05291 370 F 370 (449)
T ss_pred h
Confidence 4
No 103
>PLN03118 Rab family protein; Provisional
Probab=99.88 E-value=8.6e-22 Score=175.50 Aligned_cols=158 Identities=20% Similarity=0.169 Sum_probs=109.0
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
..+||+++|.+|||||||+++|++...... .+.++.+.....+..++ ..+.+|||||+.+ |... .
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~-~ 79 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDL--APTIGVDFKIKQLTVGGKRLKLTIWDTAGQER----------FRTL-T 79 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCc--CCCceeEEEEEEEEECCEEEEEEEEECCCchh----------hHHH-H
Confidence 568999999999999999999998653222 22333333334444544 4678899999943 3222 2
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHHH-HH-HHHHH----cCCcEEEEEEcccCCChhhHH-HHHHHHHHHcCCCCCCcEE
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDIN-IA-NFIYE----SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFN 331 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~~-~~-~~~~~----~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~ 331 (419)
..+++.+|++++|+|+++..++.+.. ++ ..+.. .+.|+++|+||+|+....... .....+.. ...++++
T Consensus 80 ~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~----~~~~~~~ 155 (211)
T PLN03118 80 SSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAK----EHGCLFL 155 (211)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH----HcCCEEE
Confidence 36788999999999999987777653 23 22322 357999999999996432211 11111111 1236899
Q ss_pred EEeccCCCCHHHHHHHHHHHHhhc
Q psy17089 332 FISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 332 ~~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
++||++|.|++++|+.|.+.+...
T Consensus 156 e~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 156 ECSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999887654
No 104
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.88 E-value=3.4e-21 Score=167.38 Aligned_cols=160 Identities=17% Similarity=0.135 Sum_probs=106.5
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
..+||+++|.+|||||||++++...... ...|++. .....+...+..+.+|||||+ +++.. ....
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~--~~~~T~~--~~~~~~~~~~~~~~l~D~~G~----------~~~~~-~~~~ 80 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVV--TTIPTIG--FNVETVEYKNLKFTMWDVGGQ----------DKLRP-LWRH 80 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCccc--cceEEEEECCEEEEEEECCCC----------HhHHH-HHHH
Confidence 4489999999999999999999754322 2223222 222345566788999999999 33332 2336
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHH-HHHHH-HH---cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 261 SILEANVVILLLDAQQNISAQDIN-IANFI-YE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~-~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
+++.+|++|+|+|+++..+..+.. .+..+ .+ .+.|+++|+||.|+.+.....++...+...........++++||
T Consensus 81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa 160 (182)
T PTZ00133 81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCA 160 (182)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeC
Confidence 789999999999999865444432 23322 22 36899999999998653332223222221101112235778999
Q ss_pred cCCCCHHHHHHHHHHHHhhc
Q psy17089 336 IKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~~ 355 (419)
++|.|++++|++|.+.+...
T Consensus 161 ~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 161 TTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999876553
No 105
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.88 E-value=3.3e-21 Score=166.53 Aligned_cols=157 Identities=12% Similarity=0.096 Sum_probs=105.2
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
..+||+++|.+|||||||++++..... ....|++..+. .....++..+.+|||||+.. +.. ....
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~--~~~~~t~~~~~--~~~~~~~~~l~l~D~~G~~~----------~~~-~~~~ 76 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGES--VTTIPTIGFNV--ETVTYKNISFTVWDVGGQDK----------IRP-LWRH 76 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCC--CCcCCccccce--EEEEECCEEEEEEECCCChh----------hHH-HHHH
Confidence 358999999999999999999964432 22233333322 23445677899999999933 322 2235
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
+++.||++|+|+|++++.+..+. +++..+.. .+.|+++|+||+|+.+.....++.+.+...........++++||
T Consensus 77 ~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 156 (175)
T smart00177 77 YYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCA 156 (175)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeC
Confidence 78999999999999987555442 34443322 36899999999999654322223232221111122345778999
Q ss_pred cCCCCHHHHHHHHHHHH
Q psy17089 336 IKLNNINSFMESINHVY 352 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~~ 352 (419)
++|.|++++|++|.+.+
T Consensus 157 ~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 157 TSGDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998764
No 106
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.87 E-value=2.7e-21 Score=165.90 Aligned_cols=156 Identities=23% Similarity=0.159 Sum_probs=109.3
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
.+||+++|.+|||||||++++.+... .....++.+.+.....+..++. .+.+|||||+ +.+... ..
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~----------~~~~~~-~~ 70 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSF-NPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQ----------ERFRTI-TT 70 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcC-CcccccCccceEEEEEEEECCEEEEEEEEeCCch----------HHHHHH-HH
Confidence 48999999999999999999997642 2223344444444444555554 6778999998 333322 23
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
.+++.||++++|+|++++.++++. +++..+.. .+.|+++|+||+|+.+.... .+....+... ..++++++|
T Consensus 71 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~S 146 (167)
T cd01867 71 AYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADE----YGIKFLETS 146 (167)
T ss_pred HHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHH----cCCEEEEEe
Confidence 678899999999999988776664 34444443 46899999999999753221 1111122222 236899999
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q psy17089 335 AIKLNNINSFMESINHVYD 353 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~ 353 (419)
|++|.|++++|..+.+.+.
T Consensus 147 a~~~~~v~~~~~~i~~~~~ 165 (167)
T cd01867 147 AKANINVEEAFFTLAKDIK 165 (167)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999998764
No 107
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.87 E-value=2.3e-21 Score=166.27 Aligned_cols=156 Identities=18% Similarity=0.126 Sum_probs=105.0
Q ss_pred EEEEEeCCCCchhHHHHHHhCCcee---eecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRV---ITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+|+++|++|||||||+++|.+.... ........|.......+.+++..+.+|||||+.. +. .....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~-~~~~~ 69 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQES----------LR-SLWDK 69 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChh----------hH-HHHHH
Confidence 5899999999999999999864221 0111223333334455667788999999999943 22 22335
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHH----HcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCC--CCCCcEEEE
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIY----ESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNF--LSFAMFNFI 333 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~----~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 333 (419)
+++.+|++++|+|+++..+.... .++..+. ..+.|+++|+||+|+.......+..+.+...... ....+++++
T Consensus 70 ~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (167)
T cd04160 70 YYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPV 149 (167)
T ss_pred HhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEe
Confidence 78899999999999876443332 2333332 2579999999999986654333333333322211 134589999
Q ss_pred eccCCCCHHHHHHHHHH
Q psy17089 334 SAIKLNNINSFMESINH 350 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~ 350 (419)
||++|.|+++++++|.+
T Consensus 150 Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 150 SALEGTGVREGIEWLVE 166 (167)
T ss_pred eCCCCcCHHHHHHHHhc
Confidence 99999999999998864
No 108
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.87 E-value=9.7e-21 Score=160.30 Aligned_cols=155 Identities=33% Similarity=0.473 Sum_probs=120.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.+|+++|++|+|||||+|+|++.........+++|.+.....+.+.+.++.+|||||+.+.. ..............+..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETE-DEIEKIGIERAREAIEE 80 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCc-chHHHHHHHHHHHHHhh
Confidence 47999999999999999999988766667788999998888888889999999999987553 12222223345566789
Q ss_pred CCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcchhHHhcCCCCeEEEeeccCCCHHHHHHHHHHhc
Q psy17089 83 SDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLENILTIE 162 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~vSa~~~~~v~~l~~~i~~~~ 162 (419)
+|++++|+|+.+.....+...... ..++|+++|+||+|+...... .......+++++||+++.|+++++++|...+
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL--LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc--ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 999999999997666665544433 458999999999999865554 2222234789999999999999999988653
No 109
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.87 E-value=2.2e-21 Score=165.35 Aligned_cols=152 Identities=18% Similarity=0.156 Sum_probs=100.7
Q ss_pred EEEEEeCCCCchhHHHHHHhCCcee--eecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHH
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRV--ITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~ 261 (419)
+|+++|.+|||||||+++|.+.... ...+..|.+ ...+...+..+.+|||||+. ++... ...+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~----~~~~~~~~~~~~l~Dt~G~~----------~~~~~-~~~~ 65 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFN----VESFEKGNLSFTAFDMSGQG----------KYRGL-WEHY 65 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccc----eEEEEECCEEEEEEECCCCH----------hhHHH-HHHH
Confidence 5899999999999999999986421 222222322 22344567789999999993 33322 2357
Q ss_pred HhhcCEEEEEecCCCCCCHHHH-HHHHHHH------HcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 262 ILEANVVILLLDAQQNISAQDI-NIANFIY------ESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 262 ~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~------~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
++.+|++++|+|++++.+.... .++..+. ..++|+++|+||+|+.+.....+....+..........+++++|
T Consensus 66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~S 145 (162)
T cd04157 66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASN 145 (162)
T ss_pred HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEee
Confidence 8899999999999987654432 2333332 24799999999999975433222222211000011124689999
Q ss_pred ccCCCCHHHHHHHHHH
Q psy17089 335 AIKLNNINSFMESINH 350 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~ 350 (419)
|++|.|++++|++|.+
T Consensus 146 a~~g~gv~~~~~~l~~ 161 (162)
T cd04157 146 ALTGEGLDEGVQWLQA 161 (162)
T ss_pred CCCCCchHHHHHHHhc
Confidence 9999999999998864
No 110
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.87 E-value=3.5e-21 Score=171.18 Aligned_cols=157 Identities=20% Similarity=0.146 Sum_probs=106.6
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (419)
+||+++|.+|||||||+++|++.... ...+.+..+. ....+....+.+|||||+..+. .. ...++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~--~~~~Tig~~~--~~~~~~~~~l~iwDt~G~e~~~----------~l-~~~~~ 65 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFK--DTVSTVGGAF--YLKQWGPYNISIWDTAGREQFH----------GL-GSMYC 65 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC--CCCCccceEE--EEEEeeEEEEEEEeCCCcccch----------hh-HHHHh
Confidence 48999999999999999999977532 2233222222 2223345678899999994432 22 22578
Q ss_pred hhcCEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEEcccCCChh-----------------hHH---HHHHHH
Q psy17089 263 LEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHN-----------------QRK---IIKNNI 318 (419)
Q Consensus 263 ~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~NK~Dl~~~~-----------------~~~---~~~~~~ 318 (419)
+.+|++|+|+|+++..++.+.. ++..+.+ .+.|+++|+||+|+.... ... +....+
T Consensus 66 ~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~ 145 (220)
T cd04126 66 RGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAF 145 (220)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHH
Confidence 8999999999999988877763 4444443 468999999999996510 011 111112
Q ss_pred HHHcC----------CCCCCcEEEEeccCCCCHHHHHHHHHHHHhh
Q psy17089 319 KKKLN----------FLSFAMFNFISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 319 ~~~~~----------~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
.+... ....++++++||++|.||+++|..+.+.+..
T Consensus 146 a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 146 YKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred HHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 22211 1123689999999999999999999987654
No 111
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.87 E-value=1.4e-21 Score=165.66 Aligned_cols=150 Identities=17% Similarity=0.141 Sum_probs=103.6
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|||||||+++++.... ...++++ .......+.+++. .+.+|||+|+.. ..
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f--~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~----------------~~ 61 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSY--VQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD----------------AQ 61 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCC--CCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc----------------hh
Confidence 4899999999999999999886532 2223322 2223355666674 577899999932 13
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
+++.+|++++|+|+++..++++. .|+..+.. .+.|+++|+||.|+..........++.++.......+++++|||
T Consensus 62 ~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 141 (158)
T cd04103 62 FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCA 141 (158)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEec
Confidence 56789999999999999888884 56666654 35799999999998432111111111112222223478999999
Q ss_pred cCCCCHHHHHHHHHHH
Q psy17089 336 IKLNNINSFMESINHV 351 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~ 351 (419)
++|.||+++|..+.+.
T Consensus 142 k~~~~i~~~f~~~~~~ 157 (158)
T cd04103 142 TYGLNVERVFQEAAQK 157 (158)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999988753
No 112
>KOG0078|consensus
Probab=99.87 E-value=2.5e-21 Score=163.45 Aligned_cols=152 Identities=19% Similarity=0.129 Sum_probs=122.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecC-CCCCCccceEEEEEECCeE--EEEEEcCCCCCcchhhHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVAN-YPGLTRDRHYGEGYIGKKS--FIIIDTGGFEPEVKKGIMHEMTKQTKQ 78 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~~~~ 78 (419)
.+||+++|++|||||+++-+|.... +... ..+..+|.....+..+|.+ +++|||+|++ ++...+..
T Consensus 12 ~~kvlliGDs~vGKt~~l~rf~d~~--f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQe---------rf~ti~~s 80 (207)
T KOG0078|consen 12 LFKLLLIGDSGVGKTCLLLRFSDDS--FNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQE---------RFRTITTA 80 (207)
T ss_pred EEEEEEECCCCCchhHhhhhhhhcc--CcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccch---------hHHHHHHH
Confidence 3699999999999999999998643 3333 3457789999999999864 5599999999 88899999
Q ss_pred HHHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccC
Q psy17089 79 AIIESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYG 148 (419)
Q Consensus 79 ~~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~ 148 (419)
++++|+++++|+|.++..+.++ ..|++.+.+ .+.|.+||+||+|+...+.+ ..+. ..|. .++++||++|
T Consensus 81 YyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~-~F~EtSAk~~ 159 (207)
T KOG0078|consen 81 YYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGI-KFFETSAKTN 159 (207)
T ss_pred HHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCC-eEEEccccCC
Confidence 9999999999999886444333 335555554 37899999999999997776 2233 5666 8899999999
Q ss_pred CCHHHHHHHHHHhcCCc
Q psy17089 149 NGIKNFLENILTIELPY 165 (419)
Q Consensus 149 ~~v~~l~~~i~~~~~~~ 165 (419)
.|+++.|..+++.+.+.
T Consensus 160 ~NI~eaF~~La~~i~~k 176 (207)
T KOG0078|consen 160 FNIEEAFLSLARDILQK 176 (207)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999877643
No 113
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.87 E-value=2.3e-21 Score=175.78 Aligned_cols=156 Identities=19% Similarity=0.338 Sum_probs=110.8
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|||||||++++++... ...+.++..+.....+.+++. .+.||||||+.. |...+. .
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f--~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~----------~~~~~~-~ 67 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRF--EEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHP----------FPAMRR-L 67 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCChhHhEEEEEEECCEEEEEEEEECCCChh----------hhHHHH-H
Confidence 4899999999999999999987642 234455555655566666664 566899999843 322222 3
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH------------cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCC
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE------------SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSF 327 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~------------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 327 (419)
++..+|++|+|+|+++..++++. .+++.+.+ .+.|+++|+||+|+...... ..+++.+.+.....
T Consensus 68 ~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v--~~~ei~~~~~~~~~ 145 (247)
T cd04143 68 SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREV--QRDEVEQLVGGDEN 145 (247)
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcccc--CHHHHHHHHHhcCC
Confidence 67889999999999998777665 34455432 36899999999999642211 11223333332235
Q ss_pred CcEEEEeccCCCCHHHHHHHHHHHHh
Q psy17089 328 AMFNFISAIKLNNINSFMESINHVYD 353 (419)
Q Consensus 328 ~~~~~~SA~~g~gv~~l~~~i~~~~~ 353 (419)
++++++||++|.|++++|+.|.+...
T Consensus 146 ~~~~evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 146 CAYFEVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 68999999999999999999998654
No 114
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.87 E-value=2.4e-21 Score=165.11 Aligned_cols=153 Identities=22% Similarity=0.212 Sum_probs=107.3
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
++|+++|.+|||||||++++.+... .....++...+.....+..++. .+.+|||||+ +++... ...
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~----------~~~~~~-~~~ 68 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEF-HSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQ----------ERYQTI-TKQ 68 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCc----------HhHHhh-HHH
Confidence 4799999999999999999997643 2223444444444455566553 5678999998 333322 235
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
+++.+|++++|+|+++..++++. .|+..+.. .+.|+++|+||+|+...... .+....+.+. ..++++++||
T Consensus 69 ~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~----~~~~~~e~Sa 144 (161)
T cd04117 69 YYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKE----YGMDFFETSA 144 (161)
T ss_pred HhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHH----cCCEEEEEeC
Confidence 78899999999999998777665 34444433 36899999999999643321 1122222222 2368999999
Q ss_pred cCCCCHHHHHHHHHHH
Q psy17089 336 IKLNNINSFMESINHV 351 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~ 351 (419)
++|.|++++|.+|.+.
T Consensus 145 ~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 145 CTNSNIKESFTRLTEL 160 (161)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999999764
No 115
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.87 E-value=3.7e-21 Score=170.57 Aligned_cols=159 Identities=26% Similarity=0.374 Sum_probs=115.2
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe-eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK-KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
..++|+++|.+|||||||+|++++... .+...+++|.+.....+.+.+. .+.+|||||+.+... ....+.+. ...
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~--~~~ 115 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADV-YAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP-HQLVEAFR--STL 115 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchh-ccCCccceeccceeEEEEecCCceEEEeCCCccccCCC-HHHHHHHH--HHH
Confidence 457999999999999999999998753 4445566777766666666565 899999999854321 12223332 233
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 260 KSILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
..+..+|++++|+|++++.+..+.. +.+.+.. .++|+++|+||+|+.+..... ..+. ....+++++||
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-------~~~~-~~~~~~~~~Sa 187 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-------ERLE-AGRPDAVFISA 187 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-------HHhh-cCCCceEEEEc
Confidence 5678899999999999887666542 3344433 468999999999997654322 1112 23468999999
Q ss_pred cCCCCHHHHHHHHHHH
Q psy17089 336 IKLNNINSFMESINHV 351 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~ 351 (419)
++|.|+++++++|.+.
T Consensus 188 ~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 188 KTGEGLDELLEAIEEL 203 (204)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999998764
No 116
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.87 E-value=5.3e-21 Score=167.01 Aligned_cols=150 Identities=17% Similarity=0.226 Sum_probs=116.6
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCC------cee---------eecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcc
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGE------NRV---------ITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKT 246 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~------~~~---------~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 246 (419)
.++|+++|++++|||||+++|++. ... ......|+|.+.....++.++.++.++||||+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~----- 76 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA----- 76 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH-----
Confidence 378999999999999999999853 110 111256888888777777788899999999983
Q ss_pred hHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCc-EEEEEEcccCCChhh-HHHHHHHHHHHcCC
Q psy17089 247 FEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRS-LIVCVNKWDSIIHNQ-RKIIKNNIKKKLNF 324 (419)
Q Consensus 247 ~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~ 324 (419)
.|. ..+...+..+|++++|+|++.+...++.+++..+...++| +|+|+||+|+..... .+...+++.+.+..
T Consensus 77 -----~~~-~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~ 150 (195)
T cd01884 77 -----DYI-KNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSK 150 (195)
T ss_pred -----HHH-HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 332 4455778899999999999999888999999999999987 789999999974333 33355566666654
Q ss_pred CC----CCcEEEEeccCCCCHH
Q psy17089 325 LS----FAMFNFISAIKLNNIN 342 (419)
Q Consensus 325 ~~----~~~~~~~SA~~g~gv~ 342 (419)
.+ .++++++||++|.|..
T Consensus 151 ~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 151 YGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred hcccccCCeEEEeeCccccCCC
Confidence 43 4799999999999854
No 117
>KOG0095|consensus
Probab=99.87 E-value=1.8e-21 Score=153.24 Aligned_cols=159 Identities=21% Similarity=0.177 Sum_probs=123.7
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
--+||+++|..|||||.|+++++.. .++.+...++..++...+++.+|. ++.+|||+|+ |+|+ +.+
T Consensus 6 flfkivlvgnagvgktclvrrftqg-lfppgqgatigvdfmiktvev~gekiklqiwdtagq----------erfr-sit 73 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQG-LFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQ----------ERFR-SIT 73 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhcc-CCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccch----------HHHH-HHH
Confidence 3589999999999999999999965 456666666677887888888776 5567999999 7776 556
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
..|++.|+.+|+|+|++...++.=+ +|++.+.+ ..+--|+|+||+|+.+..+ +.+.+.+.+.......+.++|
T Consensus 74 qsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drre---vp~qigeefs~~qdmyflets 150 (213)
T KOG0095|consen 74 QSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRRE---VPQQIGEEFSEAQDMYFLETS 150 (213)
T ss_pred HHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhh---hhHHHHHHHHHhhhhhhhhhc
Confidence 6899999999999999998777665 45555544 4556799999999965433 334444444444557789999
Q ss_pred ccCCCCHHHHHHHHHHHHhh
Q psy17089 335 AIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~~ 354 (419)
|++..|++.||..++..+-.
T Consensus 151 akea~nve~lf~~~a~rli~ 170 (213)
T KOG0095|consen 151 AKEADNVEKLFLDLACRLIS 170 (213)
T ss_pred ccchhhHHHHHHHHHHHHHH
Confidence 99999999999998876554
No 118
>PRK11058 GTPase HflX; Provisional
Probab=99.87 E-value=5.2e-21 Score=185.62 Aligned_cols=162 Identities=20% Similarity=0.254 Sum_probs=121.1
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe-eEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK-KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
.++|+++|.||||||||+|+|++.+.. +.+.+++|.+.....+.+.+. .+.+|||||+.+.. ..+.++.| ..++.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~l-p~~lve~f--~~tl~ 272 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHL-PHDLVAAF--KATLQ 272 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccC-CHHHHHHH--HHHHH
Confidence 368999999999999999999998754 778899999998888877664 88999999985431 12445555 34567
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHH----HHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEecc
Q psy17089 261 SILEANVVILLLDAQQNISAQDIN----IANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAI 336 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 336 (419)
.++.||++++|+|++++.+..+.. ++..+...++|+++|+||+|+.+..... . .. . . .+...++++||+
T Consensus 273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~-~-~~-~-~---~~~~~~v~ISAk 345 (426)
T PRK11058 273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPR-I-DR-D-E---ENKPIRVWLSAQ 345 (426)
T ss_pred HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHH-H-HH-H-h---cCCCceEEEeCC
Confidence 889999999999999987666653 3333333579999999999997532111 1 11 1 1 111235889999
Q ss_pred CCCCHHHHHHHHHHHHhh
Q psy17089 337 KLNNINSFMESINHVYDS 354 (419)
Q Consensus 337 ~g~gv~~l~~~i~~~~~~ 354 (419)
+|.|+++|++.+.+.+..
T Consensus 346 tG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 346 TGAGIPLLFQALTERLSG 363 (426)
T ss_pred CCCCHHHHHHHHHHHhhh
Confidence 999999999999988753
No 119
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.87 E-value=4.7e-21 Score=166.29 Aligned_cols=153 Identities=22% Similarity=0.273 Sum_probs=109.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceec--------C------CCCCCccceEEEEEE-----CCeEEEEEEcCCCCCc
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVA--------N------YPGLTRDRHYGEGYI-----GKKSFIIIDTGGFEPE 63 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~--------~------~~~~t~~~~~~~~~~-----~~~~~~liDtpG~~~~ 63 (419)
++|+++|++|||||||+++|++..+.+.. + ..++|.+.......+ .+..+.+|||||+.
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-- 78 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHV-- 78 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCCh--
Confidence 47999999999999999999875322110 1 123444444333433 34567899999997
Q ss_pred chhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc---hhHH-hcCC--
Q psy17089 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFY-ELGI-- 137 (419)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~---~~~~-~~~~-- 137 (419)
++......++.++|++++|+|+.++....+...+..+...++|+++|+||+|+...... .++. .++.
T Consensus 79 -------~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 151 (179)
T cd01890 79 -------DFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDP 151 (179)
T ss_pred -------hhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCc
Confidence 45566677889999999999998876665544444555568999999999998654321 2222 2233
Q ss_pred CCeEEEeeccCCCHHHHHHHHHHhcCC
Q psy17089 138 GNPHIISALYGNGIKNFLENILTIELP 164 (419)
Q Consensus 138 ~~~~~vSa~~~~~v~~l~~~i~~~~~~ 164 (419)
..++++||++|.|++++++++.+.++.
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERIPP 178 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhCCC
Confidence 258999999999999999999987653
No 120
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.87 E-value=2.6e-21 Score=164.39 Aligned_cols=152 Identities=19% Similarity=0.145 Sum_probs=100.5
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHh
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~ 263 (419)
||+++|.+|||||||+++|...... ...+++... ...+...+..+.+|||||+. .+. .....++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~--~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~----------~~~-~~~~~~~~ 65 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV--TTIPTIGFN--VETVTYKNLKFQVWDLGGQT----------SIR-PYWRCYYS 65 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc--CcCCccCcC--eEEEEECCEEEEEEECCCCH----------HHH-HHHHHHhc
Confidence 5899999999999999999765432 222222222 23445567789999999993 332 22236788
Q ss_pred hcCEEEEEecCCCCCCHHH-HH-HHHHHHH---cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCC
Q psy17089 264 EANVVILLLDAQQNISAQD-IN-IANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKL 338 (419)
Q Consensus 264 ~ad~~i~v~d~~~~~~~~~-~~-~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 338 (419)
.+|++++|+|+++..+... .+ +...+.. .++|+++|+||+|+.+.....++...+..........+++++||++|
T Consensus 66 ~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~ 145 (158)
T cd04151 66 NTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKG 145 (158)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCC
Confidence 9999999999998643332 12 2222222 47999999999999654322223222211111112347999999999
Q ss_pred CCHHHHHHHHHH
Q psy17089 339 NNINSFMESINH 350 (419)
Q Consensus 339 ~gv~~l~~~i~~ 350 (419)
.|++++|+++.+
T Consensus 146 ~gi~~l~~~l~~ 157 (158)
T cd04151 146 EGLDEGMDWLVN 157 (158)
T ss_pred CCHHHHHHHHhc
Confidence 999999999864
No 121
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.87 E-value=6e-21 Score=186.27 Aligned_cols=156 Identities=28% Similarity=0.333 Sum_probs=121.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.+|+++|++|||||||+|+|++...+++++++++|++.....+.++|..+.+|||||+.+.. +...+........++.+
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~-~~ie~~gi~~~~~~~~~ 282 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA-DFVERLGIEKSFKAIKQ 282 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch-hHHHHHHHHHHHHHHhh
Confidence 58999999999999999999998777889999999999999999999999999999996443 11222223445678899
Q ss_pred CCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcchhHH-hcCCCCeEEEeeccCCCHHHHHHHHHHh
Q psy17089 83 SDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSISLDFY-ELGIGNPHIISALYGNGIKNFLENILTI 161 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~-~~~~~~~~~vSa~~~~~v~~l~~~i~~~ 161 (419)
+|++++|+|++++.+..+. ++..+...++|+++|+||+|+... ....+. ..+. +++++||++ .|++++++.+.+.
T Consensus 283 aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~-~~~~~~~~~~~-~~~~vSak~-~gI~~~~~~L~~~ 358 (442)
T TIGR00450 283 ADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN-SLEFFVSSKVL-NSSNLSAKQ-LKIKALVDLLTQK 358 (442)
T ss_pred CCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc-chhhhhhhcCC-ceEEEEEec-CCHHHHHHHHHHH
Confidence 9999999999887666555 445555568899999999999654 222222 2233 678999997 5999999888865
Q ss_pred cC
Q psy17089 162 EL 163 (419)
Q Consensus 162 ~~ 163 (419)
+.
T Consensus 359 i~ 360 (442)
T TIGR00450 359 IN 360 (442)
T ss_pred HH
Confidence 43
No 122
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.87 E-value=4e-21 Score=164.94 Aligned_cols=156 Identities=19% Similarity=0.132 Sum_probs=108.8
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
.+||+++|.+|||||||++++++... .....+..+.+.....+..++ ..+.+|||||+ +++... ..
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~-~~ 71 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ----------ESFRSI-TR 71 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCc----------HHHHHH-HH
Confidence 47999999999999999999998753 222233334444444455544 46788999998 344322 33
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
.+++.+|++++|+|++++.+.++. .|+..+.. .+.|+++|+||+|+...... .+....+... .+.+++++|
T Consensus 72 ~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~e~S 147 (168)
T cd01866 72 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKE----HGLIFMETS 147 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHH----cCCEEEEEe
Confidence 678899999999999987666665 34544544 47899999999999743221 1111112111 246899999
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q psy17089 335 AIKLNNINSFMESINHVYD 353 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~ 353 (419)
|++|.|++++|..+.+.+.
T Consensus 148 a~~~~~i~~~~~~~~~~~~ 166 (168)
T cd01866 148 AKTASNVEEAFINTAKEIY 166 (168)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999988754
No 123
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.87 E-value=2.1e-21 Score=165.58 Aligned_cols=153 Identities=22% Similarity=0.209 Sum_probs=105.3
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEe----CeeEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN----NKKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~----~~~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
+||+++|.+|+|||||++++.+... .....++.+.+.....+.+. ...+.+|||||+ ++|... .
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~-~ 68 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIF-TKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ----------EEFDAI-T 68 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch----------HHHHHh-H
Confidence 4899999999999999999997642 22223333444433444443 347888999998 444322 3
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH--cCCcEEEEEEcccCCChhhHH-HHHHHHHHHcCCCCCCcEEEEe
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDIN-IANFIYE--SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S 334 (419)
..+++.+|++++|+|++++.+++... |+..+.. .+.|+++|+||+|+....... +....+.+.+ +++++++|
T Consensus 69 ~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~----~~~~~~~S 144 (162)
T cd04106 69 KAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRL----QLPLFRTS 144 (162)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHc----CCeEEEEE
Confidence 36789999999999999876666543 3333332 479999999999996543211 1112222222 35899999
Q ss_pred ccCCCCHHHHHHHHHHH
Q psy17089 335 AIKLNNINSFMESINHV 351 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~ 351 (419)
|++|.|++++|+.+...
T Consensus 145 a~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 145 VKDDFNVTELFEYLAEK 161 (162)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999988753
No 124
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.87 E-value=3.8e-21 Score=165.45 Aligned_cols=156 Identities=19% Similarity=0.144 Sum_probs=107.4
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
..+||+++|.+|||||||++++++... .....+..+.+.....+..++. .+.+|||||+ +++.....
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~----------~~~~~~~~ 72 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ----------ERFRSLRT 72 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCC-CcCcCCceeeEEEEEEEEECCeEEEEEEEeCCCh----------HHHHHhHH
Confidence 568999999999999999999997642 2223344444444445555554 5677999998 44433333
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH-------cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcE
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDIN-IANFIYE-------SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMF 330 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~-------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (419)
.+++.+|++++|+|++++.+++... +...+.. .+.|+++|+||+|+...... .++..+.....+..++
T Consensus 73 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~ 148 (170)
T cd04116 73 -PFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVS---TEEAQAWCRENGDYPY 148 (170)
T ss_pred -HHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccC---HHHHHHHHHHCCCCeE
Confidence 5789999999999999887666653 3333322 35899999999998632211 1122222222334589
Q ss_pred EEEeccCCCCHHHHHHHHHHH
Q psy17089 331 NFISAIKLNNINSFMESINHV 351 (419)
Q Consensus 331 ~~~SA~~g~gv~~l~~~i~~~ 351 (419)
+++||++|.|+.++|+.+.+.
T Consensus 149 ~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 149 FETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 999999999999999998764
No 125
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.87 E-value=1.2e-21 Score=174.15 Aligned_cols=157 Identities=21% Similarity=0.210 Sum_probs=110.4
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEe-C--eeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN-N--KKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
+||+++|.+|||||||+++|++...... ..++++.+.....+... + ..+.+|||||+ +++... ..
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~-~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~----------~~~~~~-~~ 70 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV-SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ----------ERFRSI-TR 70 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCceeceEEEEEEEEECCCCEEEEEEEeCCcc----------hhHHHH-HH
Confidence 7999999999999999999997653222 33444455555555542 3 36788999998 333322 23
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEEE
Q psy17089 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 333 (419)
.+++.+|++++|+|++++.++.+. +++..+.+ ...|+++|+||+|+...... ......+.+. .+++++++
T Consensus 71 ~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~----~~~~~~e~ 146 (211)
T cd04111 71 SYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKD----LGMKYIET 146 (211)
T ss_pred HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHH----hCCEEEEE
Confidence 678999999999999998776665 34444433 34678999999999653221 1122222222 23789999
Q ss_pred eccCCCCHHHHHHHHHHHHhhc
Q psy17089 334 SAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
||++|.|++++|+.|.+.+.+.
T Consensus 147 Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 147 SARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999877654
No 126
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.87 E-value=3.5e-21 Score=165.55 Aligned_cols=155 Identities=25% Similarity=0.335 Sum_probs=112.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe-EEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK-SFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.|+++|++|||||||+|+|.+... .++..+++|++...+.+.+++. .+.+|||||+.+.... .+.+...+...+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--~~~~~~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASE--GKGLGHRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccc--cCCchHHHHHHHHh
Confidence 589999999999999999998653 4566777888888888888776 9999999998633210 01223344455678
Q ss_pred CCEEEEEEeCCCC-CCHhH-HHHHHHHHh-----cCCCEEEEEeccCCCCCCcc----hhHHhc-CCCCeEEEeeccCCC
Q psy17089 83 SDIIIFIVDGRQG-LVEQD-KLITNFLRK-----SGQPIVLVINKSENINSSIS----LDFYEL-GIGNPHIISALYGNG 150 (419)
Q Consensus 83 ~d~il~v~d~~~~-~~~~~-~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~----~~~~~~-~~~~~~~vSa~~~~~ 150 (419)
+|++++|+|++++ ..... ..+.+.+.. .++|+++|+||+|+...... .++... ...+++++||+++.|
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEG 158 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 9999999999875 22222 344444443 26899999999999776554 223332 234789999999999
Q ss_pred HHHHHHHHHHh
Q psy17089 151 IKNFLENILTI 161 (419)
Q Consensus 151 v~~l~~~i~~~ 161 (419)
++++++.+.+.
T Consensus 159 i~~l~~~i~~~ 169 (170)
T cd01898 159 LDELLRKLAEL 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999998864
No 127
>PTZ00369 Ras-like protein; Provisional
Probab=99.87 E-value=3.5e-21 Score=168.56 Aligned_cols=157 Identities=18% Similarity=0.144 Sum_probs=108.6
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
..+||+++|.+|||||||++++.+... ...+.++........+..++. .+.+|||||+.+.. ...
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~l~- 70 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHF--IDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYS----------AMR- 70 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC--CcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccch----------hhH-
Confidence 458999999999999999999997642 223333333333444445554 56679999995443 222
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEEcccCCChhhHH-HHHHHHHHHcCCCCCCcEEE
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 332 (419)
..+++.+|++++|+|++++.++++.. ++..+.+ .+.|+++|+||+|+....... .....+.+.+ ..++++
T Consensus 71 ~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~----~~~~~e 146 (189)
T PTZ00369 71 DQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSF----GIPFLE 146 (189)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHh----CCEEEE
Confidence 25788999999999999987666643 4444433 378999999999985432211 1111222222 258999
Q ss_pred EeccCCCCHHHHHHHHHHHHhh
Q psy17089 333 ISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
+||++|.|++++|.++.+.+..
T Consensus 147 ~Sak~~~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 147 TSAKQRVNVDEAFYELVREIRK 168 (189)
T ss_pred eeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999987654
No 128
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.87 E-value=2.4e-21 Score=190.14 Aligned_cols=163 Identities=21% Similarity=0.286 Sum_probs=132.3
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~ 261 (419)
..+||++|.||||||||+|+|+|.+ ..++++||+|.+...+.+.+.+..+.++|.||........ .|+-- +.++
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S--~DE~V---ar~~ 76 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYS--EDEKV---ARDF 76 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCC--chHHH---HHHH
Confidence 3579999999999999999999996 5899999999999999999999999999999997765432 12211 1123
Q ss_pred H--hhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCC
Q psy17089 262 I--LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLN 339 (419)
Q Consensus 262 ~--~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 339 (419)
+ ..+|+++.|+|+++- +.++.+.-++.+.++|+++++|++|..++.....-.+.+.+.++ +|++++||++|.
T Consensus 77 ll~~~~D~ivnVvDAtnL--eRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG----vPVv~tvA~~g~ 150 (653)
T COG0370 77 LLEGKPDLIVNVVDATNL--ERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLG----VPVVPTVAKRGE 150 (653)
T ss_pred HhcCCCCEEEEEcccchH--HHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhC----CCEEEEEeecCC
Confidence 3 357999999999986 67778888899999999999999998765443333344454444 899999999999
Q ss_pred CHHHHHHHHHHHHhhcC
Q psy17089 340 NINSFMESINHVYDSSI 356 (419)
Q Consensus 340 gv~~l~~~i~~~~~~~~ 356 (419)
|++++...+.+..+...
T Consensus 151 G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 151 GLEELKRAIIELAESKT 167 (653)
T ss_pred CHHHHHHHHHHhccccc
Confidence 99999999998776554
No 129
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=5.4e-21 Score=179.89 Aligned_cols=160 Identities=28% Similarity=0.372 Sum_probs=122.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEE-CCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI-GKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
+..|+|||.||||||||+|+|++.+. .+++++++|+++..+.+.+ ++.++.+|||||+.+...+ ...+...+...+
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~--~~gLg~~flrhi 234 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASE--GAGLGHRFLKHI 234 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCc--cccHHHHHHHHh
Confidence 36799999999999999999998654 4788999999999999988 5678999999999743211 113445666778
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh-----cCCCEEEEEeccCCCCCCcc----hh-HH-hcCCCCeEEEeeccC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK-----SGQPIVLVINKSENINSSIS----LD-FY-ELGIGNPHIISALYG 148 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~----~~-~~-~~~~~~~~~vSa~~~ 148 (419)
..++++++|+|+++..+..+ ..+.+.+.. .++|+++|+||+|+...... .+ +. ..+ .+++++||+++
T Consensus 235 e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~-~~i~~iSAktg 313 (335)
T PRK12299 235 ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALG-GPVFLISAVTG 313 (335)
T ss_pred hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence 89999999999886433322 445555554 36899999999999765543 11 11 222 37899999999
Q ss_pred CCHHHHHHHHHHhcCCc
Q psy17089 149 NGIKNFLENILTIELPY 165 (419)
Q Consensus 149 ~~v~~l~~~i~~~~~~~ 165 (419)
.|+++++++|.+.+.+.
T Consensus 314 ~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 314 EGLDELLRALWELLEEA 330 (335)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999877654
No 130
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.87 E-value=6.9e-21 Score=167.39 Aligned_cols=149 Identities=19% Similarity=0.213 Sum_probs=111.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCC-CCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANY-PGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.|+++|.+|||||||+++|.... +...+ ++++.+.....+.+++ ..+.+|||+|++ ++......++
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~--f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe---------~~~~l~~~y~ 70 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT--FCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQE---------RFNSITSAYY 70 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC--CCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCch---------hhHHHHHHHh
Confidence 58999999999999999999753 33333 4455676667788887 466799999997 6667778889
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hc-CCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-EL-GIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~-~~~~~~~vSa~~~~ 149 (419)
+++|++++|+|.++..+... ..|...++. .+.|+++|+||+|+...+.+ .++. .. +. .++++||++|.
T Consensus 71 ~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~-~~~etSAktg~ 149 (202)
T cd04120 71 RSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGM-RFCEASAKDNF 149 (202)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCC-EEEEecCCCCC
Confidence 99999999999887544333 233444443 36899999999999765554 2222 22 33 68999999999
Q ss_pred CHHHHHHHHHHhcCC
Q psy17089 150 GIKNFLENILTIELP 164 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~ 164 (419)
|++++|.++.+.+..
T Consensus 150 gV~e~F~~l~~~~~~ 164 (202)
T cd04120 150 NVDEIFLKLVDDILK 164 (202)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999876643
No 131
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.87 E-value=7.4e-21 Score=162.01 Aligned_cols=153 Identities=21% Similarity=0.208 Sum_probs=111.1
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
.||+++|++|||||||+++|++... .....++++.+.....+..++. .+.+|||||+ +++.. ....
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~----------~~~~~-~~~~ 68 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTF-DNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ----------ERFRS-LIPS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CccCCCceeeeEEEEEEEECCEEEEEEEEECCCc----------HHHHH-HHHH
Confidence 3899999999999999999998754 3456677777777777777664 5788999998 33332 2335
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHH-Hc--CCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIY-ES--GRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~-~~--~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
+++.+|++++|+|++++.++++. .++..+. .. +.|+++|+||+|+...... .+....+.+. .+++++++||
T Consensus 69 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa 144 (161)
T cd01861 69 YIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKE----LNAMFIETSA 144 (161)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHH----hCCEEEEEeC
Confidence 78899999999999987666654 3444443 23 4899999999999543211 1111222222 2378999999
Q ss_pred cCCCCHHHHHHHHHHH
Q psy17089 336 IKLNNINSFMESINHV 351 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~ 351 (419)
++|.|++++++++.+.
T Consensus 145 ~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 145 KAGHNVKELFRKIASA 160 (161)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999998764
No 132
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.87 E-value=5.1e-21 Score=162.38 Aligned_cols=150 Identities=30% Similarity=0.408 Sum_probs=112.3
Q ss_pred EEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEE
Q psy17089 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDII 86 (419)
Q Consensus 7 ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~i 86 (419)
|+|++|||||||+|+|++.. ...+.++++|++.....+.+++..+.+|||||+.+.........+....... .++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEE
Confidence 58999999999999999874 5567788999999888899999999999999997543221112222222221 599999
Q ss_pred EEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc----hhHH-hcCCCCeEEEeeccCCCHHHHHHHHHHh
Q psy17089 87 IFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGIKNFLENILTI 161 (419)
Q Consensus 87 l~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~----~~~~-~~~~~~~~~vSa~~~~~v~~l~~~i~~~ 161 (419)
++|+|+... .....+...+...++|+++|+||+|+...... ..+. .++. +++++||+++.|++++++.+.+.
T Consensus 79 i~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 79 VNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGV-PVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred EEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCC-CeEEEEccCCCCHHHHHHHHHHH
Confidence 999998863 22334455566678999999999999766543 2222 2344 78999999999999999998875
No 133
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.87 E-value=4.3e-21 Score=165.12 Aligned_cols=156 Identities=18% Similarity=0.147 Sum_probs=108.8
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
.++|+++|++|||||||++++++... .....++.+.+.....+..++ ..+.+|||||+ +++......
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~~ 70 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRF-PERTEATIGVDFRERTVEIDGERIKVQLWDTAGQ----------ERFRKSMVQ 70 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-CCccccceeEEEEEEEEEECCeEEEEEEEeCCCh----------HHHHHhhHH
Confidence 37999999999999999999987642 222233333444445555555 46788999998 333222233
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEEE
Q psy17089 260 KSILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 333 (419)
.+++.+|++++|+|++++.++++.. |+..+.. .+.|+++|+||+|+...... ......+.+. ..++++++
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~e~ 146 (170)
T cd04115 71 HYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADA----HSMPLFET 146 (170)
T ss_pred HhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHH----cCCcEEEE
Confidence 5778999999999999987777764 4444443 35899999999998643321 1122222222 23789999
Q ss_pred eccC---CCCHHHHHHHHHHHH
Q psy17089 334 SAIK---LNNINSFMESINHVY 352 (419)
Q Consensus 334 SA~~---g~gv~~l~~~i~~~~ 352 (419)
||++ +.|++++|..+.+.+
T Consensus 147 Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 147 SAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred eccCCcCCCCHHHHHHHHHHHh
Confidence 9999 899999999988765
No 134
>PLN03110 Rab GTPase; Provisional
Probab=99.87 E-value=4.6e-21 Score=171.13 Aligned_cols=158 Identities=17% Similarity=0.153 Sum_probs=115.1
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
..+||+++|++|||||||+++|++... .....++...+.....+.+++. .+.||||||+ +++... .
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~-~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~----------~~~~~~-~ 78 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEF-CLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ----------ERYRAI-T 78 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCc----------HHHHHH-H
Confidence 458999999999999999999998753 2333445555555566666553 7778999998 444322 3
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEEE
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 333 (419)
..+++.++++++|+|+++..+++.. .|+..+.. .+.|+++|+||+|+...... .+....+.. ...++++++
T Consensus 79 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~----~~~~~~~e~ 154 (216)
T PLN03110 79 SAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAE----KEGLSFLET 154 (216)
T ss_pred HHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHH----HcCCEEEEE
Confidence 3678999999999999988777665 35555554 47999999999998643221 112222222 234799999
Q ss_pred eccCCCCHHHHHHHHHHHHhh
Q psy17089 334 SAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~ 354 (419)
||++|.|++++|+.+.+.+..
T Consensus 155 SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 155 SALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999887755
No 135
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.87 E-value=5e-21 Score=164.48 Aligned_cols=157 Identities=14% Similarity=0.100 Sum_probs=106.4
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHh
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~ 263 (419)
||+++|.+|||||||+++|.+... ....| |.......+..++..+.+|||||+.+.. .....+++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~~~~--T~~~~~~~~~~~~~~i~l~Dt~G~~~~~-----------~~~~~~~~ 65 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQPIP--TIGFNVETVEYKNLKFTIWDVGGKHKLR-----------PLWKHYYL 65 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CCcCC--cCceeEEEEEECCEEEEEEECCCChhcc-----------hHHHHHhc
Confidence 589999999999999999998642 22222 3333334566677899999999994432 12235778
Q ss_pred hcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCC--CCCCcEEEEecc
Q psy17089 264 EANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNF--LSFAMFNFISAI 336 (419)
Q Consensus 264 ~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~SA~ 336 (419)
.+|++++|+|+++..+..+. .++..+.. .+.|+++|+||+|+.......+..+.+ ..... .....++++||+
T Consensus 66 ~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Sa~ 144 (169)
T cd04158 66 NTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELL-SLHKLCCGRSWYIQGCDAR 144 (169)
T ss_pred cCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHh-CCccccCCCcEEEEeCcCC
Confidence 99999999999987655543 33333332 358999999999996443322222221 11111 112368899999
Q ss_pred CCCCHHHHHHHHHHHHhhcC
Q psy17089 337 KLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 337 ~g~gv~~l~~~i~~~~~~~~ 356 (419)
+|.|++++|++|.+.+....
T Consensus 145 ~g~gv~~~f~~l~~~~~~~~ 164 (169)
T cd04158 145 SGMGLYEGLDWLSRQLVAAG 164 (169)
T ss_pred CCCCHHHHHHHHHHHHhhcc
Confidence 99999999999988766543
No 136
>PRK04213 GTP-binding protein; Provisional
Probab=99.87 E-value=1.2e-20 Score=166.90 Aligned_cols=167 Identities=28% Similarity=0.370 Sum_probs=112.7
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcch-HHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTF-EVIEKFSVIKTL 259 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~e~~~~~~~~ 259 (419)
..++|+++|.+|||||||+|+|.+.. +.++..+|+|...... .+. ++.+|||||+....... +..+++......
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEE--eec--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 45799999999999999999999875 4566778888765432 222 68999999974332211 123444322211
Q ss_pred ---HHHhhcCEEEEEecCCCCC-----------CHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCC
Q psy17089 260 ---KSILEANVVILLLDAQQNI-----------SAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFL 325 (419)
Q Consensus 260 ---~~~~~ad~~i~v~d~~~~~-----------~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 325 (419)
..+..++++++|+|.+... ...+..++..+...++|+++|+||+|+.+.. ....+++.+.+...
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~~~~~~~ 160 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR--DEVLDEIAERLGLY 160 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH--HHHHHHHHHHhcCC
Confidence 1234568999999986532 1234456666677799999999999996543 12223333333321
Q ss_pred ---C--CCcEEEEeccCCCCHHHHHHHHHHHHhhc
Q psy17089 326 ---S--FAMFNFISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 326 ---~--~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
. ..+++++||++| |+++++++|.+.+.+.
T Consensus 161 ~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 161 PPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred ccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 0 136899999999 9999999999876554
No 137
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.87 E-value=3.5e-21 Score=172.13 Aligned_cols=159 Identities=16% Similarity=0.177 Sum_probs=109.2
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEe--CeeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN--NKKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
...+||+++|.+|||||||+++++.... .....+++..+.....+..+ ...+.+|||||+.+ |....
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f-~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~ 79 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLR 79 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCC-CCccCCccceeEEEEEEEECCeEEEEEEEECCCchh----------hhhhh
Confidence 4679999999999999999999876532 22222223233333333333 35788899999943 32222
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH--cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE--SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
..+++.+|++|+|+|++++.+++.. .|+..+.+ .+.|+++|+||+|+.......... .+. ....++++++|
T Consensus 80 -~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~~----~~~~~~~~e~S 153 (219)
T PLN03071 80 -DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFH----RKKNLQYYEIS 153 (219)
T ss_pred -HHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHH-HHH----HhcCCEEEEcC
Confidence 2578899999999999998777665 35455443 478999999999985322111111 111 12347899999
Q ss_pred ccCCCCHHHHHHHHHHHHhhc
Q psy17089 335 AIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~~~ 355 (419)
|++|.|++++|.++.+.+...
T Consensus 154 Ak~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 154 AKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred CCCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999887643
No 138
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.87 E-value=5.6e-21 Score=164.97 Aligned_cols=154 Identities=20% Similarity=0.131 Sum_probs=103.8
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~ 261 (419)
..+|+++|.+|+|||||++++.+...... .+ |.......+..++..+.+|||||+. ++... ...+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~-~~~~ 79 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT--SP--TIGSNVEEIVYKNIRFLMWDIGGQE----------SLRSS-WNTY 79 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc--CC--ccccceEEEEECCeEEEEEECCCCH----------HHHHH-HHHH
Confidence 47999999999999999999987643222 22 2222234556667899999999993 33212 2357
Q ss_pred HhhcCEEEEEecCCCCCCHHHH-HHHHHH-HH---cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEecc
Q psy17089 262 ILEANVVILLLDAQQNISAQDI-NIANFI-YE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAI 336 (419)
Q Consensus 262 ~~~ad~~i~v~d~~~~~~~~~~-~~~~~~-~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 336 (419)
++.+|++++|+|++++.+.... ..+..+ .. .+.|+++|+||+|+.......++.+.+.........++++++||+
T Consensus 80 ~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~ 159 (174)
T cd04153 80 YTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCAL 159 (174)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccC
Confidence 8899999999999987554432 223333 22 368999999999986532222232322211111223578999999
Q ss_pred CCCCHHHHHHHHHH
Q psy17089 337 KLNNINSFMESINH 350 (419)
Q Consensus 337 ~g~gv~~l~~~i~~ 350 (419)
+|.|++++|++|.+
T Consensus 160 ~g~gi~e~~~~l~~ 173 (174)
T cd04153 160 TGEGLPEGLDWIAS 173 (174)
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999998864
No 139
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=1e-20 Score=182.30 Aligned_cols=162 Identities=21% Similarity=0.222 Sum_probs=121.4
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEe-CeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN-NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~ 261 (419)
..|+++|.||||||||+|+|++.. ..++++|++|..+....+.+. +..+.+|||||+.+...... -.....+++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~----gLg~~fLrh 233 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGV----GLGHQFLRH 233 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccc----hHHHHHHHH
Confidence 479999999999999999999875 356789999999988888877 78999999999965432111 122445677
Q ss_pred HhhcCEEEEEecCCCC---CCHHHH-HHHHHHHH-----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEE
Q psy17089 262 ILEANVVILLLDAQQN---ISAQDI-NIANFIYE-----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 262 ~~~ad~~i~v~d~~~~---~~~~~~-~~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (419)
+.+++++++|+|+++. ....+. .+.+.+.. .++|+++|+||+|+..... ..+.+.+.+. .++++
T Consensus 234 ier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e---~l~~l~~~l~----~~i~~ 306 (424)
T PRK12297 234 IERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEE---NLEEFKEKLG----PKVFP 306 (424)
T ss_pred HhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHH---HHHHHHHHhC----CcEEE
Confidence 8899999999999753 333333 34444543 4789999999999843221 1223333333 57999
Q ss_pred EeccCCCCHHHHHHHHHHHHhhcC
Q psy17089 333 ISAIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~~~ 356 (419)
+||+++.|+++|++.+.+.+...+
T Consensus 307 iSA~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 307 ISALTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhCc
Confidence 999999999999999998887654
No 140
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.87 E-value=3e-21 Score=168.82 Aligned_cols=161 Identities=14% Similarity=0.122 Sum_probs=107.3
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEe-C--eeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN-N--KKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
+||+++|.+|||||||+++|.+... . ..+.++........+... + ..+.+|||||+ +++.....
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~-~-~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~----------~~~~~~~~- 67 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKF-P-EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQ----------EEYDRLRP- 67 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcC-C-CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCc----------hhHHHHHH-
Confidence 4899999999999999999997642 2 233333332223333333 3 36788999998 33332222
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHHH--HHHHHHH--cCCcEEEEEEcccCCChhhH--HHHHHHHHHHcCCCCCCcEEEE
Q psy17089 260 KSILEANVVILLLDAQQNISAQDIN--IANFIYE--SGRSLIVCVNKWDSIIHNQR--KIIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~~--~~~~~~~--~~~~~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 333 (419)
.+++.+|++++|+|+++..++++.. |+..+.. .+.|+++|+||+|+...... .....+..+.....+..+++++
T Consensus 68 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 147 (187)
T cd04132 68 LSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLEC 147 (187)
T ss_pred HhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEc
Confidence 4778999999999999987777653 4444432 47899999999998643210 0001111111222222389999
Q ss_pred eccCCCCHHHHHHHHHHHHhhcC
Q psy17089 334 SAIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~~~ 356 (419)
||++|.|++++|..+.+.+....
T Consensus 148 Sa~~~~~v~~~f~~l~~~~~~~~ 170 (187)
T cd04132 148 SAKTMENVEEVFDTAIEEALKKE 170 (187)
T ss_pred cCCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999998876543
No 141
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.87 E-value=3.4e-21 Score=164.94 Aligned_cols=155 Identities=15% Similarity=0.138 Sum_probs=104.8
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|||||||+++++.... .....+....+.....+..++ ..+.+|||||+.+.. ... ..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~-~~ 68 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFG----------GLR-DG 68 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhc----------ccc-HH
Confidence 4899999999999999999985532 111122222233223333333 467789999995433 111 24
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH--cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccC
Q psy17089 261 SILEANVVILLLDAQQNISAQDIN-IANFIYE--SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIK 337 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 337 (419)
+++.+|++|+|+|++++.+.+... ++..+.. .+.|+++|+||+|+......... .. +.....++++++||++
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~-~~----~~~~~~~~~~e~Sa~~ 143 (166)
T cd00877 69 YYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQ-IT----FHRKKNLQYYEISAKS 143 (166)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHH-HH----HHHHcCCEEEEEeCCC
Confidence 678899999999999987776653 4444443 26999999999999633211111 11 1122457899999999
Q ss_pred CCCHHHHHHHHHHHHhh
Q psy17089 338 LNNINSFMESINHVYDS 354 (419)
Q Consensus 338 g~gv~~l~~~i~~~~~~ 354 (419)
|.|++++|+.+.+.+..
T Consensus 144 ~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 144 NYNFEKPFLWLARKLLG 160 (166)
T ss_pred CCChHHHHHHHHHHHHh
Confidence 99999999999987654
No 142
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.87 E-value=1.5e-21 Score=168.38 Aligned_cols=155 Identities=18% Similarity=0.196 Sum_probs=107.6
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+|++++|.+|+|||||++++.+.. ....+.++..+.....+..++ ..+.+|||||+.+.. ..+. .
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~-~ 67 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNG--YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFD----------KLRP-L 67 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhc----------cccc-c
Confidence 589999999999999999998754 234555565555545555555 467789999994432 2222 4
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEEcccCCChhh----------HHHHHHHHHHHcCCCC
Q psy17089 261 SILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQ----------RKIIKNNIKKKLNFLS 326 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~ 326 (419)
+++.+|++++|+|++++.+++.. .|+..+.. .+.|+++|+||+|+..... .....++........+
T Consensus 68 ~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 147 (173)
T cd04130 68 CYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIG 147 (173)
T ss_pred ccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhC
Confidence 67899999999999998777664 35655554 4689999999999964321 0001111122222223
Q ss_pred CCcEEEEeccCCCCHHHHHHHHHH
Q psy17089 327 FAMFNFISAIKLNNINSFMESINH 350 (419)
Q Consensus 327 ~~~~~~~SA~~g~gv~~l~~~i~~ 350 (419)
..+++++||++|.|++++|+.+.-
T Consensus 148 ~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 148 ACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHh
Confidence 348999999999999999988753
No 143
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.87 E-value=2.9e-21 Score=166.83 Aligned_cols=155 Identities=16% Similarity=0.145 Sum_probs=106.0
Q ss_pred EEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHHHHH
Q psy17089 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (419)
Q Consensus 185 i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (419)
|+++|.+|||||||++++.+... ...+..+..+.....+..++. .+.+|||||+.+.. ..+ ..++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~-~~~~ 67 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF--PEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYD----------RLR-PLSY 67 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC--CCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccc----------hhc-hhhc
Confidence 58999999999999999998642 223333333333444555554 57789999994432 122 2467
Q ss_pred hhcCEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEEcccCCChhhH-HH---------HHHHHHHHcCCCCCC
Q psy17089 263 LEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQR-KI---------IKNNIKKKLNFLSFA 328 (419)
Q Consensus 263 ~~ad~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~-~~---------~~~~~~~~~~~~~~~ 328 (419)
+.+|++++|+|+++..++++. .|+..+.. .+.|+++|+||+|+...... .. ..++........+..
T Consensus 68 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 147 (174)
T smart00174 68 PDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAV 147 (174)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCc
Confidence 899999999999998777765 35565554 47999999999999653210 00 011111222223334
Q ss_pred cEEEEeccCCCCHHHHHHHHHHHH
Q psy17089 329 MFNFISAIKLNNINSFMESINHVY 352 (419)
Q Consensus 329 ~~~~~SA~~g~gv~~l~~~i~~~~ 352 (419)
+++++||++|.|++++|+.+.+.+
T Consensus 148 ~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 148 KYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHh
Confidence 899999999999999999998765
No 144
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=1.8e-20 Score=161.28 Aligned_cols=159 Identities=28% Similarity=0.453 Sum_probs=122.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcch-hhHHHHH-HHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK-KGIMHEM-TKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~-~~~~~~~-~~~~~~~~ 80 (419)
.+|+++|.+|+|||||+|+|++.......+.+++|++........++..+.+|||||+.+... ....+.+ .......+
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~ 82 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAI 82 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHH
Confidence 589999999999999999999876566677888999888888888899999999999864421 1111121 12334567
Q ss_pred HhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc-----hhHH--hc---CCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-----LDFY--EL---GIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~-----~~~~--~~---~~~~~~~vSa~~~~~ 150 (419)
..+|++++|+|+.++.+.....+...+...+.|+++++||+|+...... .+.. .+ +..+++++||+++.|
T Consensus 83 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (174)
T cd01895 83 ERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQG 162 (174)
T ss_pred hhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCC
Confidence 8999999999999887877777777777678999999999999876321 1111 11 234789999999999
Q ss_pred HHHHHHHHHHh
Q psy17089 151 IKNFLENILTI 161 (419)
Q Consensus 151 v~~l~~~i~~~ 161 (419)
++++++++.+.
T Consensus 163 i~~~~~~l~~~ 173 (174)
T cd01895 163 VDKLFDAIDEV 173 (174)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 145
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.87 E-value=6.7e-21 Score=168.10 Aligned_cols=158 Identities=20% Similarity=0.133 Sum_probs=109.9
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
..++|+++|.+|||||||+++|.+... .....++.+.+.....+...+ ..+.+|||||+ +.+... .
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~----------~~~~~~-~ 72 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTF-SGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQ----------ERFRTI-T 72 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCccccceeEEEEEEECCEEEEEEEEeCCCc----------hhHHHH-H
Confidence 458999999999999999999997642 222233333344444444445 36778999998 333322 2
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH--cCCcEEEEEEcccCCChhhHH-HHHHHHHHHcCCCCCCcEEEEe
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE--SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S 334 (419)
..+++.+|++++|+|++++.++++. .|+..+.. ...|+++|+||+|+.+..... .....+... .+.+++++|
T Consensus 73 ~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~----~~~~~~e~S 148 (199)
T cd04110 73 STYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQ----MGISLFETS 148 (199)
T ss_pred HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHH----cCCEEEEEE
Confidence 3678899999999999998766664 35555443 358999999999997543211 111112221 236899999
Q ss_pred ccCCCCHHHHHHHHHHHHhh
Q psy17089 335 AIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~~ 354 (419)
|++|.|++++|+++.+.+..
T Consensus 149 a~~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 149 AKENINVEEMFNCITELVLR 168 (199)
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999987654
No 146
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.86 E-value=5.6e-21 Score=164.21 Aligned_cols=162 Identities=28% Similarity=0.380 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc---hhHHhcCCCCeEEEee
Q psy17089 69 MHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFYELGIGNPHIISA 145 (419)
Q Consensus 69 ~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~---~~~~~~~~~~~~~vSa 145 (419)
+++...++...+.++|++++|+|++.+....+..+.+.+. ++|.++|+||+|+...... .+++......++.+||
T Consensus 6 ~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~--~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa 83 (171)
T cd01856 6 MAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILG--NKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNA 83 (171)
T ss_pred HHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHhc--CCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEEC
Confidence 3466677888999999999999998766655555555543 6899999999999754332 2333333346899999
Q ss_pred ccCCCHHHHHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEee
Q psy17089 146 LYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLF 225 (419)
Q Consensus 146 ~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~ 225 (419)
+++.|++++.+.+...++.... ..........++++++|.+|+|||||+|+|.+.....+++.+++|.......+
T Consensus 84 ~~~~gi~~L~~~l~~~l~~~~~-----~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~ 158 (171)
T cd01856 84 KSGKGVKKLLKAAKKLLKDIEK-----LKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKI 158 (171)
T ss_pred CCcccHHHHHHHHHHHHHHHhh-----hhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEe
Confidence 9999999999999987653211 00011123457999999999999999999999876678888999987655443
Q ss_pred EEeCeeEEEEeCCCC
Q psy17089 226 EYNNKKYILIDTAGI 240 (419)
Q Consensus 226 ~~~~~~~~liDtpG~ 240 (419)
. ..+.+|||||+
T Consensus 159 ~---~~~~~iDtpG~ 170 (171)
T cd01856 159 S---PGIYLLDTPGI 170 (171)
T ss_pred c---CCEEEEECCCC
Confidence 2 67899999997
No 147
>KOG0079|consensus
Probab=99.86 E-value=9.3e-22 Score=154.65 Aligned_cols=160 Identities=19% Similarity=0.175 Sum_probs=121.7
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
-++..++|+||||||||+.++.... +.-+-..++..|....++.++|. ++.||||+|+ |+|+.. +.
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddt-Fs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGq----------ErFrti-ts 75 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDT-FSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQ----------ERFRTI-TS 75 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcc-cccceEEEeeeeEEEEEeecCCcEEEEEEeecccH----------HHHHHH-HH
Confidence 3578899999999999999998663 33334445667777788888775 6677999999 777644 34
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH--cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEecc
Q psy17089 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE--SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAI 336 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 336 (419)
.|++..+++++|+|++++.++.+- +|++.+.. ...|-++|+||.|+.+..... .++. ..++..-++.+|++|||
T Consensus 76 tyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~--t~dA-r~~A~~mgie~FETSaK 152 (198)
T KOG0079|consen 76 TYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVD--TEDA-RAFALQMGIELFETSAK 152 (198)
T ss_pred HHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeee--hHHH-HHHHHhcCchheehhhh
Confidence 799999999999999999888875 57777765 357889999999986543321 1122 22333345799999999
Q ss_pred CCCCHHHHHHHHHHHHhhcC
Q psy17089 337 KLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 337 ~g~gv~~l~~~i~~~~~~~~ 356 (419)
++.|++..|..|.+......
T Consensus 153 e~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 153 ENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred hcccchHHHHHHHHHHHHHH
Confidence 99999999999998866544
No 148
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.86 E-value=1.1e-20 Score=166.09 Aligned_cols=150 Identities=21% Similarity=0.196 Sum_probs=106.0
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeec---------------CCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcch
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITY---------------DTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTF 247 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 247 (419)
.+|+++|.+|+|||||+++|++....... ...|++.......+..++..+.+|||||+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~------- 75 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGH------- 75 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCc-------
Confidence 58999999999999999999862111111 12456666655666777889999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHc---C-
Q psy17089 248 EVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKL---N- 323 (419)
Q Consensus 248 ~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~---~- 323 (419)
++|. .....+++.+|++++|+|++++...+...++..+...++|+++|+||+|+..... ....+++.+.+ .
T Consensus 76 ---~~~~-~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~ 150 (194)
T cd01891 76 ---ADFG-GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARP-EEVVDEVFDLFIELGA 150 (194)
T ss_pred ---HHHH-HHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCH-HHHHHHHHHHHHHhCC
Confidence 3333 2334688999999999999987655555667777778999999999999964322 22223333322 1
Q ss_pred --CCCCCcEEEEeccCCCCHHHH
Q psy17089 324 --FLSFAMFNFISAIKLNNINSF 344 (419)
Q Consensus 324 --~~~~~~~~~~SA~~g~gv~~l 344 (419)
...+.+++++||++|.|+.++
T Consensus 151 ~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 151 TEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred ccccCccCEEEeehhcccccccc
Confidence 112468999999999987553
No 149
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.86 E-value=4.3e-21 Score=164.44 Aligned_cols=155 Identities=19% Similarity=0.187 Sum_probs=104.9
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEE--eCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY--NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|||||||+++|.+... ...++.+... ......+ .+..+.+|||||..... .....
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~~~ 66 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEF--PENVPRVLPE-ITIPADVTPERVPTTIVDTSSRPQDR-----------ANLAA 66 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcC--CccCCCcccc-eEeeeeecCCeEEEEEEeCCCchhhh-----------HHHhh
Confidence 3899999999999999999997643 2233333222 2222233 34578899999984321 11234
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEEcccCCChhhHH---HHHHHHHHHcCCCCCCcEEEE
Q psy17089 261 SILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQRK---IIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 333 (419)
+++.+|++++|+|++++.+.+.. .|...+.+ .+.|+++|+||+|+.+..... .....+...+.. ..+++++
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 144 (166)
T cd01893 67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFRE--IETCVEC 144 (166)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhc--ccEEEEe
Confidence 57889999999999998777764 35555543 478999999999997544321 111122222221 2379999
Q ss_pred eccCCCCHHHHHHHHHHHHh
Q psy17089 334 SAIKLNNINSFMESINHVYD 353 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~ 353 (419)
||++|.|++++|+.+.+.+.
T Consensus 145 Sa~~~~~v~~lf~~~~~~~~ 164 (166)
T cd01893 145 SAKTLINVSEVFYYAQKAVL 164 (166)
T ss_pred ccccccCHHHHHHHHHHHhc
Confidence 99999999999999887653
No 150
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.86 E-value=7.7e-21 Score=162.32 Aligned_cols=155 Identities=21% Similarity=0.162 Sum_probs=109.5
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|++|+|||||+++|++... .....+..+.+.....+..++ ..+.+|||||+ +++. .....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~----------~~~~-~~~~~ 68 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ----------ERFR-SITSS 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCh----------HHHH-HHHHH
Confidence 5899999999999999999998753 333444445444445556655 46778999998 3333 22335
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
+++.+|++++|+|++++.+.+.. .|+..+.. .++|+++|+||+|+...... .+....+.+. .+++++++||
T Consensus 69 ~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~e~Sa 144 (164)
T smart00175 69 YYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEE----HGLPFFETSA 144 (164)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHH----cCCeEEEEeC
Confidence 77889999999999987666654 34444443 46999999999998653211 1111222222 2367999999
Q ss_pred cCCCCHHHHHHHHHHHHh
Q psy17089 336 IKLNNINSFMESINHVYD 353 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~ 353 (419)
++|.|++++++.+.+.+.
T Consensus 145 ~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 145 KTNTNVEEAFEELAREIL 162 (164)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998764
No 151
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.86 E-value=7.6e-21 Score=162.48 Aligned_cols=155 Identities=19% Similarity=0.208 Sum_probs=104.7
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCc-cceeeeEeeEEe---CeeEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGT-TRDSIKSLFEYN---NKKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~-t~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
+||+++|.+|||||||+++|.+........+..+ ..+.....+..+ ...+.+|||||+ +.+... .
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~-~ 69 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ----------ELYSDM-V 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCH----------HHHHHH-H
Confidence 4899999999999999999986422222333333 234333333332 257888999998 333322 2
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH--cCCcEEEEEEcccCCChhhHHH-HHHHHHHHcCCCCCCcEEEEe
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE--SGRSLIVCVNKWDSIIHNQRKI-IKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~S 334 (419)
..+++.+|++++|+|+++..++.+. .|+..+.. .+.|+++|+||+|+.+...... ....+... .+++++++|
T Consensus 70 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~S 145 (164)
T cd04101 70 SNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQA----NQLKFFKTS 145 (164)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHH----cCCeEEEEe
Confidence 3577899999999999987665544 35555544 3699999999999965432211 11122211 236899999
Q ss_pred ccCCCCHHHHHHHHHHHH
Q psy17089 335 AIKLNNINSFMESINHVY 352 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~ 352 (419)
|++|.|++++|+.+.+.+
T Consensus 146 a~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 146 ALRGVGYEEPFESLARAF 163 (164)
T ss_pred CCCCCChHHHHHHHHHHh
Confidence 999999999999998764
No 152
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.86 E-value=4.7e-21 Score=168.40 Aligned_cols=159 Identities=16% Similarity=0.181 Sum_probs=107.5
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccce-eeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRD-SIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
+||+++|.+|||||||+++|++.. +...++.++... .....+..++. .+.+|||||+.+.. .. ..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~----------~~-~~ 68 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHR-FLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYE----------AM-SR 68 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-cCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhh----------hh-hH
Confidence 489999999999999999999764 233334433332 22344556665 45589999984332 11 12
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHHc--CCcEEEEEEcccCCChhh-HHHH-HHHHHHHcCCCCCCcEEEEe
Q psy17089 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYES--GRSLIVCVNKWDSIIHNQ-RKII-KNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~~--~~~~iiv~NK~Dl~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~S 334 (419)
.+++.+|++++|+|+++..++++. .|+..+... +.|+++|+||+|+.+... .... ..+...... ....+++++|
T Consensus 69 ~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~S 147 (193)
T cd04118 69 IYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFAD-EIKAQHFETS 147 (193)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHH-HcCCeEEEEe
Confidence 467889999999999988666553 355555543 689999999999864321 0000 111111111 1236799999
Q ss_pred ccCCCCHHHHHHHHHHHHhh
Q psy17089 335 AIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~~ 354 (419)
|++|.|++++|+.+.+.+..
T Consensus 148 a~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 148 SKTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999987754
No 153
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.86 E-value=1.1e-20 Score=160.58 Aligned_cols=152 Identities=16% Similarity=0.122 Sum_probs=105.3
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHh
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~ 263 (419)
||+++|.+|||||||++++++.......+ |.......+.+.+..+.+|||||+... .. ....++.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~-~~~~~~~ 65 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIP----TIGFNVETVEYKNVSFTVWDVGGQDKI----------RP-LWKHYYE 65 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CcCcceEEEEECCEEEEEEECCCChhh----------HH-HHHHHhc
Confidence 68999999999999999999886222222 222223445566789999999998432 21 1235778
Q ss_pred hcCEEEEEecCCCCCCHHHH-HHHHHHH----HcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCC
Q psy17089 264 EANVVILLLDAQQNISAQDI-NIANFIY----ESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKL 338 (419)
Q Consensus 264 ~ad~~i~v~d~~~~~~~~~~-~~~~~~~----~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 338 (419)
.+|++++|+|++++.+.... .++..+. ..+.|+++|+||+|+.......+..+.+..........+++++||++|
T Consensus 66 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 145 (158)
T cd00878 66 NTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTG 145 (158)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCC
Confidence 89999999999987444442 2333332 257999999999999765544334333332212223468999999999
Q ss_pred CCHHHHHHHHHH
Q psy17089 339 NNINSFMESINH 350 (419)
Q Consensus 339 ~gv~~l~~~i~~ 350 (419)
.|++++|++|..
T Consensus 146 ~gv~~~~~~l~~ 157 (158)
T cd00878 146 DGLDEGLDWLLQ 157 (158)
T ss_pred CCHHHHHHHHhh
Confidence 999999998864
No 154
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.86 E-value=1.1e-20 Score=161.30 Aligned_cols=148 Identities=18% Similarity=0.186 Sum_probs=107.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
+||+++|++|||||||++++++.. +...+.+++.+.....+.+++. .+.+|||||++ ++......++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 70 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTE---------QFTAMRDLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCcccCCchhhhEEEEEEECCEEEEEEEEECCCcc---------ccchHHHHHh
Confidence 689999999999999999999753 3445555555666666777775 45689999997 4445556678
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
+++|++++|+|..+..+... ..+...+.. .+.|+++|+||+|+...+.. ..+. ..+ .+++++||++|.
T Consensus 71 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 149 (163)
T cd04136 71 KNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWG-CPFYETSAKSKI 149 (163)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcC-CeEEEecCCCCC
Confidence 99999999999876433222 223333332 36899999999999765443 1222 234 478999999999
Q ss_pred CHHHHHHHHHHhc
Q psy17089 150 GIKNFLENILTIE 162 (419)
Q Consensus 150 ~v~~l~~~i~~~~ 162 (419)
|++++++++.+.+
T Consensus 150 ~v~~l~~~l~~~~ 162 (163)
T cd04136 150 NVDEVFADLVRQI 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999998653
No 155
>KOG0098|consensus
Probab=99.86 E-value=4.6e-21 Score=157.23 Aligned_cols=152 Identities=19% Similarity=0.124 Sum_probs=121.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
++|++++|++|||||+|+.+++.+. +......+...+.....+.++++ ++++|||+|++ .|...+..+
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~kr-F~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe---------~frsv~~sy 75 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKR-FQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQE---------SFRSVTRSY 75 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccC-ccccccceeeeeeceeEEEEcCceEEEEEEecCCcH---------HHHHHHHHH
Confidence 4799999999999999999999864 32223346677888888999886 56699999998 888999999
Q ss_pred HHhCCEEEEEEeCCCC--CCHhHHHHHHHHHh--cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 80 IIESDIIIFIVDGRQG--LVEQDKLITNFLRK--SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~--~~~~~~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
+++|.++|+|+|.+++ +...+.|+.+.-+. .+.-+++++||+||..++.+ ..|. ..|+ .+.++||++++
T Consensus 76 Yr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgL-ifmETSakt~~ 154 (216)
T KOG0098|consen 76 YRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGL-IFMETSAKTAE 154 (216)
T ss_pred hccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCc-eeehhhhhhhh
Confidence 9999999999998753 34444555544444 47789999999999999876 3444 5566 67899999999
Q ss_pred CHHHHHHHHHHhcCC
Q psy17089 150 GIKNFLENILTIELP 164 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~ 164 (419)
|+++.|......+..
T Consensus 155 ~VEEaF~nta~~Iy~ 169 (216)
T KOG0098|consen 155 NVEEAFINTAKEIYR 169 (216)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999887766544
No 156
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.86 E-value=1.1e-20 Score=160.80 Aligned_cols=148 Identities=24% Similarity=0.244 Sum_probs=107.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|++|||||||+|+|++.. +...+.+++.+.....+.+++. .+.+|||||++ ++......++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~l~~~~~ 70 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE---------EYSAMRDQYM 70 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CcCCcCCcchheEEEEEEECCEEEEEEEEECCCCc---------chHHHHHHHH
Confidence 589999999999999999999754 3444555555555555667765 46689999987 4555666788
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHh---cCCCEEEEEeccCCCCCCcc----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK---SGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.+++++++|+|..+..+..+ .++..+++. .+.|+++|+||+|+...... .++. ..+. +++++||++|.|
T Consensus 71 ~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 149 (162)
T cd04138 71 RTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGI-PYIETSAKTRQG 149 (162)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCC-eEEEecCCCCCC
Confidence 99999999999876433222 333333332 47899999999999764432 2222 3344 789999999999
Q ss_pred HHHHHHHHHHhc
Q psy17089 151 IKNFLENILTIE 162 (419)
Q Consensus 151 v~~l~~~i~~~~ 162 (419)
++++++.+.+.+
T Consensus 150 i~~l~~~l~~~~ 161 (162)
T cd04138 150 VEEAFYTLVREI 161 (162)
T ss_pred HHHHHHHHHHHh
Confidence 999999998643
No 157
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.86 E-value=9.5e-21 Score=160.48 Aligned_cols=150 Identities=26% Similarity=0.354 Sum_probs=114.3
Q ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcchh---HHhcCCCCeEEEeeccCCC
Q psy17089 74 KQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSISLD---FYELGIGNPHIISALYGNG 150 (419)
Q Consensus 74 ~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~---~~~~~~~~~~~vSa~~~~~ 150 (419)
+.....+.++|++++|+|++++....+..+..++...++|+++|+||+|+.......+ +......+++++||+++.|
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~g 83 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLG 83 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEcccccc
Confidence 4455567789999999999887666666777777667899999999999965432212 2221123689999999999
Q ss_pred HHHHHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe
Q psy17089 151 IKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK 230 (419)
Q Consensus 151 v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 230 (419)
++++++.+.+.++.. ....+++++|.+|+|||||+|+|.+.....+++.+|+|..... +. .+.
T Consensus 84 i~~L~~~l~~~~~~~--------------~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~--~~-~~~ 146 (156)
T cd01859 84 TKILRRTIKELAKID--------------GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQL--VK-ITS 146 (156)
T ss_pred HHHHHHHHHHHHhhc--------------CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEE--EE-cCC
Confidence 999999999887642 2446889999999999999999998776677788888765321 12 245
Q ss_pred eEEEEeCCCC
Q psy17089 231 KYILIDTAGI 240 (419)
Q Consensus 231 ~~~liDtpG~ 240 (419)
.+.+|||||+
T Consensus 147 ~~~~~DtpGi 156 (156)
T cd01859 147 KIYLLDTPGV 156 (156)
T ss_pred CEEEEECcCC
Confidence 7999999995
No 158
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.86 E-value=1.8e-20 Score=160.03 Aligned_cols=149 Identities=23% Similarity=0.251 Sum_probs=108.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
..||+++|++|||||||++++++.. +...+++++.+.......+++. .+.+|||||+. ++......+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~ 70 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSY--FVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQE---------EFSAMREQY 70 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCC--CCcccCCCccceEEEEEEECCEEEEEEEEECCCCc---------chhHHHHHH
Confidence 3589999999999999999999753 3455555555555556667774 57799999987 444556677
Q ss_pred HHhCCEEEEEEeCCCCCCHhH--HHHHHHHH---hcCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccC
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD--KLITNFLR---KSGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYG 148 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~--~~~~~~l~---~~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~ 148 (419)
+.++|++++|+|..+..+... .++..+.+ ..+.|+++|+||+|+...... .++. ..+. +++++||++|
T Consensus 71 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 149 (164)
T cd04145 71 MRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKI-PYIETSAKDR 149 (164)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCC-cEEEeeCCCC
Confidence 889999999999886433222 22222222 247899999999999765543 2222 3344 7899999999
Q ss_pred CCHHHHHHHHHHhc
Q psy17089 149 NGIKNFLENILTIE 162 (419)
Q Consensus 149 ~~v~~l~~~i~~~~ 162 (419)
.|++++|+.+.+.+
T Consensus 150 ~~i~~l~~~l~~~~ 163 (164)
T cd04145 150 LNVDKAFHDLVRVI 163 (164)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999998653
No 159
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.86 E-value=3.7e-21 Score=170.71 Aligned_cols=150 Identities=27% Similarity=0.299 Sum_probs=110.4
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeee------------------------------cCCCCccceeeeEeeEEeCeeEE
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVIT------------------------------YDTPGTTRDSIKSLFEYNNKKYI 233 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~~~~ 233 (419)
+|+++|++|+|||||+++|+....... ....|+|++.....+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999985433222 11268899888888888899999
Q ss_pred EEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCC-cEEEEEEcccCCCh--hh
Q psy17089 234 LIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGR-SLIVCVNKWDSIIH--NQ 310 (419)
Q Consensus 234 liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~iiv~NK~Dl~~~--~~ 310 (419)
+|||||+ +.|. .....+++.+|++++|+|++.+...++...+..+...+. ++|+|+||+|+... ..
T Consensus 81 liDTpG~----------~~~~-~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~ 149 (208)
T cd04166 81 IADTPGH----------EQYT-RNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEV 149 (208)
T ss_pred EEECCcH----------HHHH-HHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHH
Confidence 9999998 3332 223457889999999999999877777776777766664 47789999999742 22
Q ss_pred HHHHHHHHHHHcCCCC--CCcEEEEeccCCCCHHHH
Q psy17089 311 RKIIKNNIKKKLNFLS--FAMFNFISAIKLNNINSF 344 (419)
Q Consensus 311 ~~~~~~~~~~~~~~~~--~~~~~~~SA~~g~gv~~l 344 (419)
......++...+...+ ..+++++||++|.|+.+.
T Consensus 150 ~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 150 FEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 2233344443333332 356999999999999864
No 160
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.86 E-value=1.6e-20 Score=166.57 Aligned_cols=158 Identities=27% Similarity=0.401 Sum_probs=114.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe-EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK-SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.++|+|+|++|||||||+|+|++.. ..+...++.|.+.....+.+++. .+.+|||||+.+.......+.+.. ....+
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~-~~~~~ 118 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRS-TLEEV 118 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcch-hccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHH-HHHHH
Confidence 3799999999999999999999864 33445566777777777777665 899999999864322222233332 33457
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcchhHHhcCCCCeEEEeeccCCCHHHHHH
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLE 156 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~vSa~~~~~v~~l~~ 156 (419)
.++|++++|+|++++....+ ..+.++++. .++|+++|+||+|+...............+++++||+++.|++++++
T Consensus 119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 198 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELEERLEAGRPDAVFISAKTGEGLDELLE 198 (204)
T ss_pred hcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHHHHhhcCCCceEEEEcCCCCCHHHHHH
Confidence 78999999999987654443 334455544 36899999999999765544323333344789999999999999999
Q ss_pred HHHHh
Q psy17089 157 NILTI 161 (419)
Q Consensus 157 ~i~~~ 161 (419)
.|.+.
T Consensus 199 ~L~~~ 203 (204)
T cd01878 199 AIEEL 203 (204)
T ss_pred HHHhh
Confidence 98764
No 161
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.86 E-value=7.8e-21 Score=161.72 Aligned_cols=152 Identities=16% Similarity=0.172 Sum_probs=99.4
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEE-eCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHH
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY-NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (419)
+|+++|.+|||||||+++|.+...... .++.... ...+.. ....+.+|||||+.. +... ...++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~--~~t~~~~--~~~~~~~~~~~l~i~D~~G~~~----------~~~~-~~~~~ 65 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT--IPTVGFN--VEMLQLEKHLSLTVWDVGGQEK----------MRTV-WKCYL 65 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc--cCccCcc--eEEEEeCCceEEEEEECCCCHh----------HHHH-HHHHh
Confidence 589999999999999999998764322 2222221 222333 245889999999832 2211 22568
Q ss_pred hhcCEEEEEecCCCCCCHHHH-HHHHHH-HH---cCCcEEEEEEcccCCChhhHHHHHHHHH-HHcCCCCCCcEEEEecc
Q psy17089 263 LEANVVILLLDAQQNISAQDI-NIANFI-YE---SGRSLIVCVNKWDSIIHNQRKIIKNNIK-KKLNFLSFAMFNFISAI 336 (419)
Q Consensus 263 ~~ad~~i~v~d~~~~~~~~~~-~~~~~~-~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~SA~ 336 (419)
+.+|++++|+|++++.+.... .++..+ .. .+.|+++|+||+|+.......++...+. ..+......+++++||+
T Consensus 66 ~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~ 145 (160)
T cd04156 66 ENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAV 145 (160)
T ss_pred ccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccc
Confidence 899999999999987544443 223222 21 5799999999999964322222322221 11111123579999999
Q ss_pred CCCCHHHHHHHHHH
Q psy17089 337 KLNNINSFMESINH 350 (419)
Q Consensus 337 ~g~gv~~l~~~i~~ 350 (419)
+|.|++++|+.|.+
T Consensus 146 ~~~gv~~~~~~i~~ 159 (160)
T cd04156 146 TGEGLAEAFRKLAS 159 (160)
T ss_pred cCCChHHHHHHHhc
Confidence 99999999998864
No 162
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.86 E-value=1.8e-20 Score=159.55 Aligned_cols=148 Identities=22% Similarity=0.220 Sum_probs=111.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|++|||||||+|+|++.... ....++++.+.....+.+++. .+.+|||||+. ++.......+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~---------~~~~~~~~~~ 70 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFD-NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQE---------RFRSLIPSYI 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCceeeeEEEEEEEECCEEEEEEEEECCCcH---------HHHHHHHHHh
Confidence 48999999999999999999987532 345667777877777777774 57899999986 5555667778
Q ss_pred HhCCEEEEEEeCCCCC--CHhHHHHHHHHHhc--CCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGL--VEQDKLITNFLRKS--GQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~--~~~~~~~~~~l~~~--~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.++|++++|+|..++. .....++....... +.|+++|+||+|+...... ..+. ..+ ..++++||+++.|
T Consensus 71 ~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 149 (161)
T cd01861 71 RDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELN-AMFIETSAKAGHN 149 (161)
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhC-CEEEEEeCCCCCC
Confidence 9999999999988643 33334444444443 4899999999999654433 1222 233 3789999999999
Q ss_pred HHHHHHHHHHh
Q psy17089 151 IKNFLENILTI 161 (419)
Q Consensus 151 v~~l~~~i~~~ 161 (419)
++++++.+.+.
T Consensus 150 v~~l~~~i~~~ 160 (161)
T cd01861 150 VKELFRKIASA 160 (161)
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 163
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.86 E-value=2.8e-21 Score=165.38 Aligned_cols=154 Identities=20% Similarity=0.241 Sum_probs=105.2
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHHHH
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~ 261 (419)
||+++|.+|||||||++++++.. ....+++++..........++. .+.+|||||+.... ......+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~~~~~~~ 68 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQAD----------TEQLERS 68 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--cccccCCChHHhceEEEEECCEEEEEEEEECCCCcccc----------cchHHHH
Confidence 58999999999999999998653 2344555554333444455554 57789999995321 0112357
Q ss_pred HhhcCEEEEEecCCCCCCHHHHH-HHHHHHH-----cCCcEEEEEEcccCCChhhHH-HHHHHHHHHcCCCCCCcEEEEe
Q psy17089 262 ILEANVVILLLDAQQNISAQDIN-IANFIYE-----SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 262 ~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S 334 (419)
++.+|++++|+|++++.+++... ++..+.+ .+.|+++|+||+|+....... +....+.+.+ +.+++++|
T Consensus 69 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~----~~~~~e~S 144 (165)
T cd04146 69 IRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASEL----GCLFFEVS 144 (165)
T ss_pred HHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHc----CCEEEEeC
Confidence 78899999999999987766543 4444443 379999999999985332111 1111222222 26899999
Q ss_pred ccCC-CCHHHHHHHHHHHHh
Q psy17089 335 AIKL-NNINSFMESINHVYD 353 (419)
Q Consensus 335 A~~g-~gv~~l~~~i~~~~~ 353 (419)
|++| .|++++|..+.+.+.
T Consensus 145 a~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 145 AAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred CCCCchhHHHHHHHHHHHHh
Confidence 9999 599999999987653
No 164
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.86 E-value=5.5e-21 Score=162.84 Aligned_cols=153 Identities=18% Similarity=0.141 Sum_probs=105.3
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|||||||+++|++... .....+..+.+.....+..++ ..+.+|||||+ +++. .....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~----------~~~~-~~~~~ 68 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKF-KEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQ----------ERFR-SVTRS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeEEEEEEEECCEEEEEEEEECcch----------HHHH-HhHHH
Confidence 4899999999999999999997653 222233333333334444444 36778999998 3332 22336
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHH---HcCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIY---ESGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~---~~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
+++.+|++++|+|++++.++... .++..+. ..+.|+++|+||+|+...... ......+... .+.+++++||
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa 144 (161)
T cd04113 69 YYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQE----NGLLFLETSA 144 (161)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHH----cCCEEEEEEC
Confidence 78899999999999998766664 3444333 257899999999999653221 1111112221 2378999999
Q ss_pred cCCCCHHHHHHHHHHH
Q psy17089 336 IKLNNINSFMESINHV 351 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~ 351 (419)
++|.|++++|+++.+.
T Consensus 145 ~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 145 LTGENVEEAFLKCARS 160 (161)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999998764
No 165
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.86 E-value=1.4e-20 Score=162.09 Aligned_cols=159 Identities=19% Similarity=0.176 Sum_probs=107.1
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|||||||++++++... .....+..+.+.....+.+.+. .+.+|||||+ +.+.. ....
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~-~~~~ 68 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQ----------ERFQS-LGVA 68 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CcCcCCccceEEEEEEEEECCEEEEEEEEeCCCh----------HHHHh-HHHH
Confidence 4899999999999999999998753 2222333344444444555554 4568999998 33322 2236
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH-------cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEE
Q psy17089 261 SILEANVVILLLDAQQNISAQDIN-IANFIYE-------SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~-------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (419)
+++.+|++|+++|++++.+.+... |...+.. .++|+++|+||+|+..+... ..+.........+..++++
T Consensus 69 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~ 146 (172)
T cd01862 69 FYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQV--STKKAQQWCQSNGNIPYFE 146 (172)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccccccc--CHHHHHHHHHHcCCceEEE
Confidence 788999999999999876555442 3332222 27899999999999742211 0111122222233468999
Q ss_pred EeccCCCCHHHHHHHHHHHHhhc
Q psy17089 333 ISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
+||++|.|++++++.+.+.+.+.
T Consensus 147 ~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 147 TSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred EECCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999876554
No 166
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.86 E-value=4.3e-21 Score=165.88 Aligned_cols=157 Identities=22% Similarity=0.220 Sum_probs=111.7
Q ss_pred EEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEe-CeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhc
Q psy17089 187 IVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN-NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEA 265 (419)
Q Consensus 187 l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~a 265 (419)
++|++|||||||+|+|.+.+. .+++++++|.+.....+.++ +.++.+|||||+.+..... +. .......+++.+
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~---~~-~~~~~~~~~~~~ 75 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEG---RG-LGNQFLAHIRRA 75 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcC---CC-ccHHHHHHHhcc
Confidence 579999999999999998864 56788888888877777777 8999999999984322100 00 111234567889
Q ss_pred CEEEEEecCCCCC------CHHHHH-HHHHHHH----------cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCC
Q psy17089 266 NVVILLLDAQQNI------SAQDIN-IANFIYE----------SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFA 328 (419)
Q Consensus 266 d~~i~v~d~~~~~------~~~~~~-~~~~~~~----------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 328 (419)
|++++|+|+++.. +..+.. +...+.. .++|+++|+||+|+.......... ..........
T Consensus 76 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~ 152 (176)
T cd01881 76 DAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGA 152 (176)
T ss_pred CEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCC
Confidence 9999999999873 333332 2222221 379999999999997655433221 1122233456
Q ss_pred cEEEEeccCCCCHHHHHHHHHHH
Q psy17089 329 MFNFISAIKLNNINSFMESINHV 351 (419)
Q Consensus 329 ~~~~~SA~~g~gv~~l~~~i~~~ 351 (419)
+++++||++|.|++++++.+...
T Consensus 153 ~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 153 EVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred CEEEEehhhhcCHHHHHHHHHhh
Confidence 89999999999999999988754
No 167
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.86 E-value=3.8e-20 Score=158.04 Aligned_cols=158 Identities=33% Similarity=0.493 Sum_probs=122.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.+|+++|.+|+|||||+|+|++...+.....+.+++..........+..+.+|||||+.... ......+.......+..
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~-~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPK-KKLGERMVKAAWSALKD 82 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcch-HHHHHHHHHHHHHHHHh
Confidence 58999999999999999999998655555666677766666666677889999999987543 11222344555667899
Q ss_pred CCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc-h---hHH-h-cCCCCeEEEeeccCCCHHHHHH
Q psy17089 83 SDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-L---DFY-E-LGIGNPHIISALYGNGIKNFLE 156 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~-~---~~~-~-~~~~~~~~vSa~~~~~v~~l~~ 156 (419)
+|++++|+|+.+.......++.+.+...+.|+++|+||+|+...... . +.+ . .+..+++++|++++.|++++++
T Consensus 83 ~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~ 162 (168)
T cd04163 83 VDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLE 162 (168)
T ss_pred CCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHH
Confidence 99999999999876777778888888778999999999999843332 1 122 2 2245889999999999999999
Q ss_pred HHHHh
Q psy17089 157 NILTI 161 (419)
Q Consensus 157 ~i~~~ 161 (419)
.|.+.
T Consensus 163 ~l~~~ 167 (168)
T cd04163 163 EIVKY 167 (168)
T ss_pred HHHhh
Confidence 98764
No 168
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.86 E-value=1.4e-20 Score=160.83 Aligned_cols=149 Identities=20% Similarity=0.195 Sum_probs=107.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+|+|++|||||||+|+|++.. +...+.+++.+.......+++. .+.+|||||++ ++......++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~---------~~~~~~~~~~ 69 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGH--FVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQE---------EFSAMRDQYM 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCc--CCcccCCchhhhEEEEEEECCEEEEEEEEECCCcc---------cchHHHHHHH
Confidence 489999999999999999999754 3444445555555556666664 56699999997 4444556678
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHH----hcCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLR----KSGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~----~~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
..+|++++|+|+.+..+... ..+...+. ..+.|+++|+||+|+...... ..+. ..+ .+++++||++|.
T Consensus 70 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 148 (164)
T smart00173 70 RTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWG-CPFLETSAKERV 148 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcC-CEEEEeecCCCC
Confidence 89999999999886433222 22222222 236899999999999765433 2222 233 378999999999
Q ss_pred CHHHHHHHHHHhcC
Q psy17089 150 GIKNFLENILTIEL 163 (419)
Q Consensus 150 ~v~~l~~~i~~~~~ 163 (419)
|++++++.+.+.+.
T Consensus 149 ~i~~l~~~l~~~~~ 162 (164)
T smart00173 149 NVDEAFYDLVREIR 162 (164)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999987654
No 169
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.86 E-value=2.3e-20 Score=164.04 Aligned_cols=152 Identities=19% Similarity=0.269 Sum_probs=114.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecC---------------CCCCCccceEEEEEECCeEEEEEEcCCCCCcchh
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVAN---------------YPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKK 66 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 66 (419)
.++|+++|++|||||||+++|++..+.+... ..++|.+.....+.+.+..+.+|||||+.
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~----- 76 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHA----- 76 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcH-----
Confidence 5789999999999999999999633222222 24566777777778888999999999997
Q ss_pred hHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc------hhHH-hc----
Q psy17089 67 GIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS------LDFY-EL---- 135 (419)
Q Consensus 67 ~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~------~~~~-~~---- 135 (419)
++......+++++|++++|+|+.++......+++..+...++|+++|+||+|+...... .+++ ..
T Consensus 77 ----~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (194)
T cd01891 77 ----DFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATE 152 (194)
T ss_pred ----HHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCcc
Confidence 56667778899999999999998766566666666666678999999999999754331 1222 11
Q ss_pred ---CCCCeEEEeeccCCCH----------HHHHHHHHHhcC
Q psy17089 136 ---GIGNPHIISALYGNGI----------KNFLENILTIEL 163 (419)
Q Consensus 136 ---~~~~~~~vSa~~~~~v----------~~l~~~i~~~~~ 163 (419)
+. +++++||++|.|+ ++|+++|..++|
T Consensus 153 ~~~~~-~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (194)
T cd01891 153 EQLDF-PVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVP 192 (194)
T ss_pred ccCcc-CEEEeehhccccccccccchhhHHHHHHHHHhcCC
Confidence 23 7899999999765 566666666555
No 170
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.86 E-value=2.1e-20 Score=162.75 Aligned_cols=150 Identities=17% Similarity=0.167 Sum_probs=111.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCC-CCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANY-PGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
.||+++|..|||||||+.+|.+.. +...+ ++.+.+.....+.+++ ..+.+|||||++ ++......+
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~--~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~---------~~~~l~~~~ 75 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGS--TESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG---------RFCTIFRSY 75 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcH---------HHHHHHHHH
Confidence 589999999999999999999753 23333 3455666556677777 456799999997 566666778
Q ss_pred HHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh--cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK--SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
++++|++++|+|.+++.+... ..+.+.+.+ .+.|+++|+||+|+...+.+ .++. ..+. .++++||++|.|
T Consensus 76 ~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~-~~~e~SAk~g~~ 154 (189)
T cd04121 76 SRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGM-TFFEVSPLCNFN 154 (189)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCC-EEEEecCCCCCC
Confidence 899999999999887544333 333344433 47899999999999765443 2333 3444 799999999999
Q ss_pred HHHHHHHHHHhcCC
Q psy17089 151 IKNFLENILTIELP 164 (419)
Q Consensus 151 v~~l~~~i~~~~~~ 164 (419)
++++|+.+.+.+..
T Consensus 155 V~~~F~~l~~~i~~ 168 (189)
T cd04121 155 ITESFTELARIVLM 168 (189)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999976643
No 171
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.86 E-value=1.7e-20 Score=164.31 Aligned_cols=149 Identities=20% Similarity=0.220 Sum_probs=108.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeE--EEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKS--FIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
||+++|.+|||||||+++|+... +...+++++.+.......+++.. +.+|||||++ ++......+++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~--f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~~ 69 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH--FVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQE---------EYTALRDQWIR 69 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCccCCCchHhhEEEEEEECCEEEEEEEEECCCch---------hhHHHHHHHHH
Confidence 58999999999999999999643 34455555555555556677754 7789999986 45556667899
Q ss_pred hCCEEEEEEeCCCCCCHhH-HHHHHHHHh------cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccC
Q psy17089 82 ESDIIIFIVDGRQGLVEQD-KLITNFLRK------SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYG 148 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~~-~~~~~~l~~------~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~ 148 (419)
++|++++|+|..+..+... ..+.+.+.. .+.|+++|+||+|+...+.. .++. ..+. +++++||++|
T Consensus 70 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SAk~~ 148 (190)
T cd04144 70 EGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGC-EFIEASAKTN 148 (190)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCC-EEEEecCCCC
Confidence 9999999999876433222 233333332 35799999999999765443 2222 3344 7899999999
Q ss_pred CCHHHHHHHHHHhcCC
Q psy17089 149 NGIKNFLENILTIELP 164 (419)
Q Consensus 149 ~~v~~l~~~i~~~~~~ 164 (419)
.|++++++.+.+.+.+
T Consensus 149 ~~v~~l~~~l~~~l~~ 164 (190)
T cd04144 149 VNVERAFYTLVRALRQ 164 (190)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999976643
No 172
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.86 E-value=1.9e-20 Score=160.55 Aligned_cols=149 Identities=25% Similarity=0.337 Sum_probs=113.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEEC---CeEEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG---KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
|.|+|+|++|+|||||+|+|.+.... ....+++|.+.....+... +..+.+|||||+. .+.......
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~---------~~~~~~~~~ 70 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE---------AFTNMRARG 70 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccc-cccCCCeEEeeccEEEecccCCcceEEEEeCCCcH---------HHHHHHHHH
Confidence 67999999999999999999976422 3344566776666666664 6789999999986 344445556
Q ss_pred HHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc---hhH---Hhc-----C-CCCeEEEeecc
Q psy17089 80 IIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDF---YEL-----G-IGNPHIISALY 147 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~---~~~---~~~-----~-~~~~~~vSa~~ 147 (419)
+..+|++++|+|+.++........+.+++..++|+++|+||+|+...... ... ... + ..+++++||++
T Consensus 71 ~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (168)
T cd01887 71 ASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKT 150 (168)
T ss_pred HhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeeccc
Confidence 78999999999998776666666777788889999999999998754321 111 111 1 13689999999
Q ss_pred CCCHHHHHHHHHHh
Q psy17089 148 GNGIKNFLENILTI 161 (419)
Q Consensus 148 ~~~v~~l~~~i~~~ 161 (419)
|.|++++++++.+.
T Consensus 151 ~~gi~~l~~~l~~~ 164 (168)
T cd01887 151 GEGIDDLLEAILLL 164 (168)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999864
No 173
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.86 E-value=1.5e-20 Score=160.10 Aligned_cols=153 Identities=20% Similarity=0.164 Sum_probs=103.3
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|+|||||+++|++..... ...+..+.+.....+.+.+ ..+.+|||||+.. +. .....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~-~~~~~ 68 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP-DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQER----------FR-TLTSS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-ccCCcccceEEEEEEEECCEEEEEEEEECCCchh----------hh-hhhHH
Confidence 589999999999999999999765322 1223333333333334444 4678899999833 32 12235
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 261 SILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
+++.+|++++|+|++++.+++... ++..+.. .+.|+++|+||+|+.......+....+... ..++++++||
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~Sa 144 (161)
T cd01863 69 YYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARK----HNMLFIETSA 144 (161)
T ss_pred HhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHH----cCCEEEEEec
Confidence 678999999999999876666543 3443433 578999999999997332211111222222 2478999999
Q ss_pred cCCCCHHHHHHHHHHH
Q psy17089 336 IKLNNINSFMESINHV 351 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~ 351 (419)
++|.|++++++.+.+.
T Consensus 145 ~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 145 KTRDGVQQAFEELVEK 160 (161)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999988764
No 174
>KOG1423|consensus
Probab=99.86 E-value=8.4e-21 Score=167.77 Aligned_cols=181 Identities=20% Similarity=0.277 Sum_probs=134.6
Q ss_pred ccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcch-HHHHHHHHHH
Q psy17089 179 SIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTF-EVIEKFSVIK 257 (419)
Q Consensus 179 ~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~e~~~~~~ 257 (419)
+.+.++||++|.||||||||.|.++|...+.++....||+....+.+.-+..+++++||||........ ..++.-....
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 357899999999999999999999999999999999999999988888888899999999997765332 2222222234
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHH-cCCcEEEEEEcccCCChhhH-------------HHHHHHHHHHcC
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDINIANFIYE-SGRSLIVCVNKWDSIIHNQR-------------KIIKNNIKKKLN 323 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~iiv~NK~Dl~~~~~~-------------~~~~~~~~~~~~ 323 (419)
...++..||++++|+|+++.-....-+.+..+.+ ..+|-++|+||+|....... ....-++.+.+.
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~ 228 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFT 228 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhc
Confidence 4578889999999999996433333455555555 57999999999998754321 111122223332
Q ss_pred CC-------------CCCcEEEEeccCCCCHHHHHHHHHHHHhhcCCCC
Q psy17089 324 FL-------------SFAMFNFISAIKLNNINSFMESINHVYDSSIIHL 359 (419)
Q Consensus 324 ~~-------------~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~ 359 (419)
.. .+-.+|.+||++|+|+++|.+++...++....++
T Consensus 229 ~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y 277 (379)
T KOG1423|consen 229 DVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKY 277 (379)
T ss_pred cCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCC
Confidence 22 2345899999999999999999999988655444
No 175
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.86 E-value=2.5e-20 Score=159.52 Aligned_cols=150 Identities=17% Similarity=0.076 Sum_probs=108.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
.+||+++|++|+|||||+++|.+... .....++.+.+.....+.+++ ..+.+|||||++ .+......+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~---------~~~~~~~~~ 72 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTF-SERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQE---------RFRTITQSY 72 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCC-cccCCCccceEEEEEEEEECCEEEEEEEEECCChH---------HHHHHHHHH
Confidence 36999999999999999999987531 112223344455556677777 467899999986 555666777
Q ss_pred HHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
++.+|++++|+|+.++.+... ..++..+.. .+.|+++|+||+|+...+.. .++. ..+...++++||++|.
T Consensus 73 ~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 152 (165)
T cd01864 73 YRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQ 152 (165)
T ss_pred hccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCC
Confidence 899999999999987543222 233333333 36799999999999766543 1222 3344468999999999
Q ss_pred CHHHHHHHHHHh
Q psy17089 150 GIKNFLENILTI 161 (419)
Q Consensus 150 ~v~~l~~~i~~~ 161 (419)
|++++++.+.+.
T Consensus 153 ~v~~~~~~l~~~ 164 (165)
T cd01864 153 NVEEAFLLMATE 164 (165)
T ss_pred CHHHHHHHHHHh
Confidence 999999999864
No 176
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.86 E-value=1.3e-20 Score=167.54 Aligned_cols=159 Identities=11% Similarity=0.148 Sum_probs=108.2
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|||||||+++|.+... ...+.++..+.....+.+++. .+.+|||+|+ +.|...+. .
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f--~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~----------e~~~~l~~-~ 68 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY--PGSYVPTVFENYTASFEIDKRRIELNMWDTSGS----------SYYDNVRP-L 68 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCccCCccccceEEEEEECCEEEEEEEEeCCCc----------HHHHHHhH-H
Confidence 6899999999999999999997642 223333433334445566555 5667999999 44433333 5
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-H-HHHHHHH--cCCcEEEEEEcccCCChhh-HHH--------H-HHHHHHHcCCCC
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-N-IANFIYE--SGRSLIVCVNKWDSIIHNQ-RKI--------I-KNNIKKKLNFLS 326 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~-~~~~~~~--~~~~~iiv~NK~Dl~~~~~-~~~--------~-~~~~~~~~~~~~ 326 (419)
+++.+|++|+|+|++++.+++.. . |...+.. .+.|+++|+||+|+..... ... + .++........+
T Consensus 69 ~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~ 148 (222)
T cd04173 69 AYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVG 148 (222)
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcC
Confidence 78999999999999998777775 3 3333333 5789999999999964311 000 1 111112222233
Q ss_pred CCcEEEEeccCCCC-HHHHHHHHHHHHhh
Q psy17089 327 FAMFNFISAIKLNN-INSFMESINHVYDS 354 (419)
Q Consensus 327 ~~~~~~~SA~~g~g-v~~l~~~i~~~~~~ 354 (419)
.++++++||+++.| |+++|..+......
T Consensus 149 ~~~y~E~SAk~~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 149 AVSYVECSSRSSERSVRDVFHVATVASLG 177 (222)
T ss_pred CCEEEEcCCCcCCcCHHHHHHHHHHHHHh
Confidence 35899999999985 99999999886543
No 177
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.86 E-value=2.5e-20 Score=160.49 Aligned_cols=150 Identities=18% Similarity=0.144 Sum_probs=110.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|.+|||||||+++|.+.. +...+..+..+.....+.+++. .+.+|||||+. ++......++
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~--f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~l~~~~~ 71 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHS--FPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQA---------EFTAMRDQYM 71 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC--CCCCcCCcccceEEEEEEECCEEEEEEEEeCCCch---------hhHHHhHHHh
Confidence 589999999999999999999753 2333333443444445677774 57799999997 5556667788
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
.++|++++|+|.+++.+... ..+.+.+.. .+.|+++|+||+|+...+.. ..+. ..+. +++++||++|.
T Consensus 72 ~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sa~~~~ 150 (172)
T cd04141 72 RCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNC-PFFETSAALRH 150 (172)
T ss_pred hcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCC-EEEEEecCCCC
Confidence 99999999999887655444 233344433 46899999999998765543 2222 3444 78999999999
Q ss_pred CHHHHHHHHHHhcCC
Q psy17089 150 GIKNFLENILTIELP 164 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~ 164 (419)
|++++|+.+.+.+.+
T Consensus 151 ~v~~~f~~l~~~~~~ 165 (172)
T cd04141 151 YIDDAFHGLVREIRR 165 (172)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999876554
No 178
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.86 E-value=2.9e-20 Score=192.02 Aligned_cols=164 Identities=18% Similarity=0.237 Sum_probs=125.8
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcch--HHHHHHHHHHHH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTF--EVIEKFSVIKTL 259 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~~e~~~~~~~~ 259 (419)
.++|+++|+||||||||+|+|+|... .+++++|+|.+.....+.+++.++.+|||||+.+..... ...++.. .+..
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i-~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQI-ACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHH-HHHH
Confidence 46899999999999999999999854 788999999999988888888999999999997764211 1122211 1111
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCC
Q psy17089 260 KSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLN 339 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 339 (419)
.....+|++++|+|+++. +++..++..+.+.++|+++|+||+|+.+........+.+.+.+ ++|++++||++|.
T Consensus 81 l~~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~L----G~pVvpiSA~~g~ 154 (772)
T PRK09554 81 ILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARL----GCPVIPLVSTRGR 154 (772)
T ss_pred HhccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHh----CCCEEEEEeecCC
Confidence 123479999999999985 4556677788889999999999999875433332334444443 3799999999999
Q ss_pred CHHHHHHHHHHHHh
Q psy17089 340 NINSFMESINHVYD 353 (419)
Q Consensus 340 gv~~l~~~i~~~~~ 353 (419)
|++++++.+.+...
T Consensus 155 GIdeL~~~I~~~~~ 168 (772)
T PRK09554 155 GIEALKLAIDRHQA 168 (772)
T ss_pred CHHHHHHHHHHhhh
Confidence 99999999988754
No 179
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.86 E-value=2.5e-20 Score=159.05 Aligned_cols=154 Identities=18% Similarity=0.125 Sum_probs=106.7
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|||||||++++++... ...+.+++.+........++ ..+.+|||||+.+.. .....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----------~~~~~ 67 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA-----------AIRDN 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--ccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhh-----------HHHHH
Confidence 4899999999999999999997642 33555555555545455554 367889999984332 22235
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChh-hHHHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHN-QRKIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
+++.+|++++|+|++++.+.... .++..+.. .++|+++|+||+|+.... ........+...+ +.+++++|
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~S 143 (164)
T cd04139 68 YHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQW----GVPYVETS 143 (164)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHh----CCeEEEee
Confidence 77889999999999987555443 23333332 579999999999996521 1111111222222 25899999
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q psy17089 335 AIKLNNINSFMESINHVYD 353 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~ 353 (419)
|++|.|++++|+.+.+.+.
T Consensus 144 a~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 144 AKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987654
No 180
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.86 E-value=7.1e-21 Score=175.83 Aligned_cols=165 Identities=25% Similarity=0.374 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcch---hHHh-cCCCCeEEEee
Q psy17089 70 HEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSISL---DFYE-LGIGNPHIISA 145 (419)
Q Consensus 70 ~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~---~~~~-~~~~~~~~vSa 145 (419)
.+...++...+..+|++++|+|++.+....+..+.+.+. ++|+++|+||+|+....... +++. .+ ..++.+||
T Consensus 9 ~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~--~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~-~~vi~iSa 85 (276)
T TIGR03596 9 AKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG--NKPRLIVLNKADLADPAVTKQWLKYFEEKG-IKALAINA 85 (276)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC--CCCEEEEEEccccCCHHHHHHHHHHHHHcC-CeEEEEEC
Confidence 456677888899999999999999888877777777764 78999999999996543222 2232 23 26799999
Q ss_pred ccCCCHHHHHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEee
Q psy17089 146 LYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLF 225 (419)
Q Consensus 146 ~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~ 225 (419)
+++.|+++|.+.+.+.+++..... .........++++++|.||||||||+|+|.+.....+++.||+|+......
T Consensus 86 ~~~~gi~~L~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~- 160 (276)
T TIGR03596 86 KKGKGVKKIIKAAKKLLKEKNEKL----KAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIK- 160 (276)
T ss_pred CCcccHHHHHHHHHHHHHHhhhhh----hhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEE-
Confidence 999999999999988776542210 000011356899999999999999999999988788899999999765333
Q ss_pred EEeCeeEEEEeCCCCCCCC
Q psy17089 226 EYNNKKYILIDTAGIRRRN 244 (419)
Q Consensus 226 ~~~~~~~~liDtpG~~~~~ 244 (419)
. +..+.++||||+....
T Consensus 161 -~-~~~~~l~DtPG~~~~~ 177 (276)
T TIGR03596 161 -L-SDGLELLDTPGILWPK 177 (276)
T ss_pred -e-CCCEEEEECCCcccCC
Confidence 3 3578999999996554
No 181
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.86 E-value=1.8e-20 Score=165.28 Aligned_cols=157 Identities=17% Similarity=0.181 Sum_probs=107.5
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHHHHH
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~ 261 (419)
||+++|.+|||||||+++|++... ...+..++.+.....+.+.+ ..+.+|||||+..+. ... ..+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~----------~~~-~~~ 67 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF--EPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFP----------AMR-KLS 67 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchhhheeEEEEECCEEEEEEEEECCCchhhh----------HHH-HHH
Confidence 589999999999999999998652 23344454444445555655 467889999984332 121 247
Q ss_pred HhhcCEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEecc
Q psy17089 262 ILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAI 336 (419)
Q Consensus 262 ~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 336 (419)
+..+|++++|+|++++.+.++.. ++..+.+ .++|+++|+||+|+......... ....+........+++++||+
T Consensus 68 ~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~-~~~~~~~~~~~~~~~~~~Sa~ 146 (198)
T cd04147 68 IQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPA-KDALSTVELDWNCGFVETSAK 146 (198)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccH-HHHHHHHHhhcCCcEEEecCC
Confidence 78999999999999876666543 3333333 57999999999999653111111 111111111123689999999
Q ss_pred CCCCHHHHHHHHHHHHhh
Q psy17089 337 KLNNINSFMESINHVYDS 354 (419)
Q Consensus 337 ~g~gv~~l~~~i~~~~~~ 354 (419)
+|.|++++|+++.+.+..
T Consensus 147 ~g~gv~~l~~~l~~~~~~ 164 (198)
T cd04147 147 DNENVLEVFKELLRQANL 164 (198)
T ss_pred CCCCHHHHHHHHHHHhhc
Confidence 999999999999987764
No 182
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.86 E-value=2.2e-20 Score=188.60 Aligned_cols=162 Identities=23% Similarity=0.237 Sum_probs=127.8
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCc--eeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGEN--RVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+.|+++|++|+|||||+++|++.. .......+|+|.+.....+.+++..+.+|||||+ ++|. ..+..
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh----------e~f~-~~~~~ 69 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH----------EKFI-SNAIA 69 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH----------HHHH-HHHHh
Confidence 368999999999999999999753 1222345688888887778888889999999998 5553 44557
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCc-EEEEEEcccCCChhhHHHHHHHHHHHcCCC---CCCcEEEEecc
Q psy17089 261 SILEANVVILLLDAQQNISAQDINIANFIYESGRS-LIVCVNKWDSIIHNQRKIIKNNIKKKLNFL---SFAMFNFISAI 336 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~~~~SA~ 336 (419)
++..+|++++|+|++++...+..+.+..+...++| +++|+||+|+.+........+++.+.+... ...+++++||+
T Consensus 70 g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~ 149 (581)
T TIGR00475 70 GGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK 149 (581)
T ss_pred hhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence 88899999999999998877887878788888999 999999999987665444444444443322 25799999999
Q ss_pred CCCCHHHHHHHHHHHHhhc
Q psy17089 337 KLNNINSFMESINHVYDSS 355 (419)
Q Consensus 337 ~g~gv~~l~~~i~~~~~~~ 355 (419)
+|.|++++++.+.+.+...
T Consensus 150 tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 150 TGQGIGELKKELKNLLESL 168 (581)
T ss_pred CCCCchhHHHHHHHHHHhC
Confidence 9999999999888776543
No 183
>KOG0093|consensus
Probab=99.86 E-value=4.6e-21 Score=150.65 Aligned_cols=160 Identities=19% Similarity=0.163 Sum_probs=117.3
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
-.+|+.++|.+.+|||||+.+..+.. +...-+.+..+++...++.... .++.+|||+|+ |+++...+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddS-Ft~afvsTvGidFKvKTvyr~~kRiklQiwDTagq----------EryrtiTT 88 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDS-FTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQ----------ERYRTITT 88 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccc-cccceeeeeeeeEEEeEeeecccEEEEEEEecccc----------hhhhHHHH
Confidence 45699999999999999999999874 3333444556666666665544 36778999999 66664444
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHHH-HHHHHH---HcCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEEE
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDIN-IANFIY---ESGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~---~~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 333 (419)
.++++|+++|+++|+++..++...+ |...++ ..+.|+|+|+||||+.++... -+....+.+.++ ..+|++
T Consensus 89 -ayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LG----fefFEt 163 (193)
T KOG0093|consen 89 -AYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLG----FEFFET 163 (193)
T ss_pred -HHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhC----hHHhhh
Confidence 7999999999999999976666654 333332 368999999999999654322 112223333333 489999
Q ss_pred eccCCCCHHHHHHHHHHHHhhcC
Q psy17089 334 SAIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~~~ 356 (419)
|||.+.||+++|+.+...+....
T Consensus 164 SaK~NinVk~~Fe~lv~~Ic~km 186 (193)
T KOG0093|consen 164 SAKENINVKQVFERLVDIICDKM 186 (193)
T ss_pred cccccccHHHHHHHHHHHHHHHh
Confidence 99999999999999998876543
No 184
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.86 E-value=9.8e-21 Score=165.63 Aligned_cols=157 Identities=20% Similarity=0.152 Sum_probs=108.2
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|||||||+++|++... .....++.+.+.....+..++. .+.+|||||+ +.+.. ....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~----------~~~~~-~~~~ 68 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEF-SESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQ----------ERFRS-LNNS 68 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCc----------HHHHh-hHHH
Confidence 4899999999999999999997753 2212333334444444555544 5678999998 33332 2346
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEEcccCCChhhHH-HHHHHHHHHcCCCCCCcEEEEec
Q psy17089 261 SILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
+++.+|++++|+|++++.++.+.. |+..+.. .+.|+++|+||+|+.+..... .....+... .+++++++||
T Consensus 69 ~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~----~~~~~~evSa 144 (188)
T cd04125 69 YYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDS----LNIPFFETSA 144 (188)
T ss_pred HccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHH----cCCeEEEEeC
Confidence 788999999999999886666543 4444443 358999999999987432211 111122222 2358999999
Q ss_pred cCCCCHHHHHHHHHHHHhhc
Q psy17089 336 IKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~~ 355 (419)
++|.|++++|..+.+.+...
T Consensus 145 ~~~~~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 145 KQSINVEEAFILLVKLIIKR 164 (188)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999887643
No 185
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.86 E-value=2.1e-20 Score=159.48 Aligned_cols=153 Identities=18% Similarity=0.184 Sum_probs=104.4
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|++|+|||||+|+|++.+... ...+..........+.+++ ..+.+|||||+ +++.... ..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~----------~~~~~~~-~~ 69 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE-NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ----------ERYRSLA-PM 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCch----------HHHHHHH-HH
Confidence 799999999999999999999876322 1222222223333444444 46778999998 3333222 35
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhh--HHHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQ--RKIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+..... ..... .+... . +.+++++|
T Consensus 70 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~-~~~~~---~-~~~~~~~S 144 (163)
T cd01860 70 YYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQ-EYADE---N-GLLFFETS 144 (163)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHH-HHHHH---c-CCEEEEEE
Confidence 77889999999999987555443 34555544 3588999999999864221 11111 11111 2 26899999
Q ss_pred ccCCCCHHHHHHHHHHHH
Q psy17089 335 AIKLNNINSFMESINHVY 352 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~ 352 (419)
|++|.|++++++++.+.+
T Consensus 145 a~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 145 AKTGENVNELFTEIAKKL 162 (163)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998764
No 186
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.86 E-value=7.7e-21 Score=163.22 Aligned_cols=159 Identities=14% Similarity=0.108 Sum_probs=108.0
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCcc-ceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTT-RDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVI 256 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~ 256 (419)
++.+||+++|.+|||||||++++++... .+..+.+|+ .+.....+.+++. .+.+|||+|+.... .
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f-~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-----------~ 69 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSF-SLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAI-----------L 69 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCC-CcccCCCccCcceEEEEEEECCeEEEEEEEecCCccccc-----------c
Confidence 3568999999999999999999998753 213444443 3333344556663 57789999995443 1
Q ss_pred HHHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH-cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEEE
Q psy17089 257 KTLKSILEANVVILLLDAQQNISAQDI-NIANFIYE-SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 257 ~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~-~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 333 (419)
....+++.+|++++|+|++++.+++.. .+++.+.. .+.|+++|+||+|+.+.... ....+.+.+.+. ...++++
T Consensus 70 ~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~ 146 (169)
T cd01892 70 LNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLG---LPPPLHF 146 (169)
T ss_pred cchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcC---CCCCEEE
Confidence 122467899999999999987555443 34443322 37999999999999643221 111122333322 2346899
Q ss_pred eccCCCCHHHHHHHHHHHHh
Q psy17089 334 SAIKLNNINSFMESINHVYD 353 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~ 353 (419)
||++|.|++++|+.+.+.+.
T Consensus 147 Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 147 SSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred EeccCccHHHHHHHHHHHhh
Confidence 99999999999999988754
No 187
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.86 E-value=2.7e-20 Score=159.08 Aligned_cols=148 Identities=20% Similarity=0.223 Sum_probs=108.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeE--EEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKS--FIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|.+|||||||+++++.. .+...+++++.+.....+.+++.. +.+|||||+. ++......++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 70 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQG--IFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE---------QFTAMRDLYM 70 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhC--CCCcccCCcchheEEEEEEECCEEEEEEEEECCCcc---------cchhHHHHHH
Confidence 58999999999999999999864 334555566666555667777654 5599999997 4555666688
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
+++|++++|+|..+..+... .++..+++. .+.|+++|+||+|+...... .++. ..+. +++++||++|.
T Consensus 71 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 149 (164)
T cd04175 71 KNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGC-AFLETSAKAKI 149 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCC-EEEEeeCCCCC
Confidence 99999999999875433222 333333332 46899999999999765443 1222 3343 78999999999
Q ss_pred CHHHHHHHHHHhc
Q psy17089 150 GIKNFLENILTIE 162 (419)
Q Consensus 150 ~v~~l~~~i~~~~ 162 (419)
|+++++.++.+.+
T Consensus 150 ~v~~~~~~l~~~l 162 (164)
T cd04175 150 NVNEIFYDLVRQI 162 (164)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998654
No 188
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.86 E-value=3.2e-20 Score=164.07 Aligned_cols=161 Identities=22% Similarity=0.141 Sum_probs=108.0
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCce--eeecCCCCccceeeeEeeEEe---------------------------C----
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENR--VITYDTPGTTRDSIKSLFEYN---------------------------N---- 229 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~--~~~~~~~~~t~~~~~~~~~~~---------------------------~---- 229 (419)
++|+++|+.|+|||||+.+|.+... ..-....+.+.......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999976521 010111122222211111111 2
Q ss_pred --eeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCC-CCHHHHHHHHHHHHcCC-cEEEEEEcccC
Q psy17089 230 --KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQN-ISAQDINIANFIYESGR-SLIVCVNKWDS 305 (419)
Q Consensus 230 --~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~-~~~~~~~~~~~~~~~~~-~~iiv~NK~Dl 305 (419)
..+.+|||||+ +.|. .....++..+|++++|+|++++ ...+....+..+...+. |+++|+||+|+
T Consensus 81 ~~~~i~~iDtPG~----------~~~~-~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl 149 (203)
T cd01888 81 LVRHVSFVDCPGH----------EILM-ATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDL 149 (203)
T ss_pred cccEEEEEECCCh----------HHHH-HHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhc
Confidence 67899999998 4443 4455777889999999999974 33444455555555554 79999999999
Q ss_pred CChhhHHHHHHHHHHHcCCC--CCCcEEEEeccCCCCHHHHHHHHHHHHhh
Q psy17089 306 IIHNQRKIIKNNIKKKLNFL--SFAMFNFISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
.+........+.+.+.+... ...+++++||++|.|+++|++.+.+.++.
T Consensus 150 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 150 VKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred cCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 86554444445555544322 34689999999999999999999876654
No 189
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.85 E-value=3.5e-20 Score=162.88 Aligned_cols=160 Identities=16% Similarity=0.120 Sum_probs=108.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
||+|+|++|||||||+++|++.. +.....|+++.+.....+.++|. .+.+|||||..... .....++......++.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~-f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~-~~~~~e~~~~~~~~~~ 79 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQE-FPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP-GTAGQEWMDPRFRGLR 79 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCC-CCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCC-ccchhHHHHHHHhhhc
Confidence 79999999999999999999764 21223444445555455667774 56699999986432 1122233334555688
Q ss_pred hCCEEEEEEeCCCCCCHhH-HHHHHHHHh------cCCCEEEEEeccCCCCCCcc-----hhHHh-cCCCCeEEEeeccC
Q psy17089 82 ESDIIIFIVDGRQGLVEQD-KLITNFLRK------SGQPIVLVINKSENINSSIS-----LDFYE-LGIGNPHIISALYG 148 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~~-~~~~~~l~~------~~~p~ilv~NK~Dl~~~~~~-----~~~~~-~~~~~~~~vSa~~~ 148 (419)
++|++++|+|..++.+... ..+.+.+.. .++|+++|+||+|+...+.. .++.. ....+++++||++|
T Consensus 80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 159 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence 9999999999986533332 223333221 35799999999999665433 12222 22237899999999
Q ss_pred CCHHHHHHHHHHhcCCc
Q psy17089 149 NGIKNFLENILTIELPY 165 (419)
Q Consensus 149 ~~v~~l~~~i~~~~~~~ 165 (419)
.|++++|+.+.+.+...
T Consensus 160 ~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 160 WHILLLFKELLISATTR 176 (198)
T ss_pred CCHHHHHHHHHHHhhcc
Confidence 99999999999766543
No 190
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.85 E-value=5.7e-21 Score=159.24 Aligned_cols=140 Identities=24% Similarity=0.255 Sum_probs=93.9
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHh
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~ 263 (419)
||+++|++|||||||+|+|.+.... +..+ . ...+.+ .+|||||+.... .+.+. .....++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~~t-~-----~~~~~~---~~iDt~G~~~~~-----~~~~~--~~~~~~~ 61 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YKKT-Q-----AVEYND---GAIDTPGEYVEN-----RRLYS--ALIVTAA 61 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----cccc-e-----eEEEcC---eeecCchhhhhh-----HHHHH--HHHHHhh
Confidence 7999999999999999999987531 1111 1 122222 689999983211 12222 2224589
Q ss_pred hcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHHH
Q psy17089 264 EANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINS 343 (419)
Q Consensus 264 ~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~ 343 (419)
.||++++|+|++++.+..+..+... .+.|+++|+||+|+.+.....+. ..+.+...+..+++++||++|.|+++
T Consensus 62 ~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~gi~~ 135 (142)
T TIGR02528 62 DADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEADVDIER---AKELLETAGAEPIFEISSVDEQGLEA 135 (142)
T ss_pred cCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCcccCHHH---HHHHHHHcCCCcEEEEecCCCCCHHH
Confidence 9999999999999887766544433 24599999999999653221111 11222222334899999999999999
Q ss_pred HHHHHH
Q psy17089 344 FMESIN 349 (419)
Q Consensus 344 l~~~i~ 349 (419)
+|+.+.
T Consensus 136 l~~~l~ 141 (142)
T TIGR02528 136 LVDYLN 141 (142)
T ss_pred HHHHHh
Confidence 998874
No 191
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.85 E-value=3.3e-20 Score=158.92 Aligned_cols=149 Identities=21% Similarity=0.177 Sum_probs=108.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
+||+++|++|||||||+++|++... .....++.+.+.....+.+++. .+.+|||||++ ++......++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~ 72 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE---------RFRTITSSYY 72 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH---------hHHHHHHHHh
Confidence 6899999999999999999997642 2233445555566666777764 67899999987 5555666778
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
+++|++++|+|+++..+... ..+...++. .+.|+++|+||+|+...... ..+. ..+. +++++||++|.|
T Consensus 73 ~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 151 (166)
T cd01869 73 RGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGI-PFLETSAKNATN 151 (166)
T ss_pred CcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCC-eEEEEECCCCcC
Confidence 99999999999886332221 222333332 35799999999998765543 1222 3344 789999999999
Q ss_pred HHHHHHHHHHhc
Q psy17089 151 IKNFLENILTIE 162 (419)
Q Consensus 151 v~~l~~~i~~~~ 162 (419)
+++++..+.+.+
T Consensus 152 v~~~~~~i~~~~ 163 (166)
T cd01869 152 VEQAFMTMAREI 163 (166)
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 192
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.85 E-value=1.4e-20 Score=162.43 Aligned_cols=157 Identities=16% Similarity=0.137 Sum_probs=107.7
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCee--EEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKK--YILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|+|||||++++.+... ...+.++..+.....+..++.. +.+|||||+..... .+ ..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~-~~ 67 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR----------LR-PL 67 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc----------cc-cc
Confidence 5899999999999999999997652 2334444444444445555554 66899999955431 11 14
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEEcccCCChhhHHH----------HHHHHHHHcCCCC
Q psy17089 261 SILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQRKI----------IKNNIKKKLNFLS 326 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~----------~~~~~~~~~~~~~ 326 (419)
+++.+|++++|+|++++.++++. .|...+.. .+.|+++|+||+|+.+...... ..++........+
T Consensus 68 ~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 147 (174)
T cd04135 68 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIG 147 (174)
T ss_pred cCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 67889999999999998777665 24555543 5799999999999864321110 0111122222333
Q ss_pred CCcEEEEeccCCCCHHHHHHHHHHHH
Q psy17089 327 FAMFNFISAIKLNNINSFMESINHVY 352 (419)
Q Consensus 327 ~~~~~~~SA~~g~gv~~l~~~i~~~~ 352 (419)
..+++++||++|.|++++|+.+.+.+
T Consensus 148 ~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 148 AHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred CCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 45799999999999999999988754
No 193
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.85 E-value=1.4e-20 Score=161.65 Aligned_cols=155 Identities=19% Similarity=0.147 Sum_probs=107.8
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
..++|+++|.+|||||||++++++... .....++.+.+.....+.+.+. .+.+|||||+ +.+.. ..
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~-~~ 73 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQ----------ERFRS-IT 73 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCc----------HHHHH-HH
Confidence 458999999999999999999986532 2223344444555556666664 4677999998 33332 22
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHH---HcCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEEE
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIY---ESGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~---~~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 333 (419)
..+++.+|++++|+|++++.++... .++..+. ..+.|+++|+||+|+...... ......+.+ ....+++++
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~----~~~~~~~~~ 149 (169)
T cd04114 74 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSD----AQDMYYLET 149 (169)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHH----HcCCeEEEe
Confidence 3678899999999999987555443 2333333 347899999999998644322 112222222 223689999
Q ss_pred eccCCCCHHHHHHHHHHH
Q psy17089 334 SAIKLNNINSFMESINHV 351 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~ 351 (419)
||++|.|++++|+.+.+.
T Consensus 150 Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 150 SAKESDNVEKLFLDLACR 167 (169)
T ss_pred eCCCCCCHHHHHHHHHHH
Confidence 999999999999999865
No 194
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.85 E-value=1.5e-20 Score=161.51 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=108.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhC
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 83 (419)
||+++|.+|||||||+++|.+.. +.... .|.......+...+..+.+|||||+. ++......++.++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~--~~~~~--~T~~~~~~~~~~~~~~i~l~Dt~G~~---------~~~~~~~~~~~~a 67 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE--FMQPI--PTIGFNVETVEYKNLKFTIWDVGGKH---------KLRPLWKHYYLNT 67 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC--CCCcC--CcCceeEEEEEECCEEEEEEECCCCh---------hcchHHHHHhccC
Confidence 68999999999999999999863 22322 34444445667788899999999987 4445666778999
Q ss_pred CEEEEEEeCCCC--CCHhHHHHHHHHHh---cCCCEEEEEeccCCCCCCcc---hhHHhc-C--C---CCeEEEeeccCC
Q psy17089 84 DIIIFIVDGRQG--LVEQDKLITNFLRK---SGQPIVLVINKSENINSSIS---LDFYEL-G--I---GNPHIISALYGN 149 (419)
Q Consensus 84 d~il~v~d~~~~--~~~~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~---~~~~~~-~--~---~~~~~vSa~~~~ 149 (419)
|+++||+|+++. +.....++.+.++. .+.|+++|+||+|+...... .++... + . ..++++||++|.
T Consensus 68 d~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 147 (169)
T cd04158 68 QAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGM 147 (169)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCC
Confidence 999999998764 33333455555532 34799999999999754332 222211 1 1 146789999999
Q ss_pred CHHHHHHHHHHhcCCcc
Q psy17089 150 GIKNFLENILTIELPYK 166 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~~~ 166 (419)
|++++|++|.+.+.+.+
T Consensus 148 gv~~~f~~l~~~~~~~~ 164 (169)
T cd04158 148 GLYEGLDWLSRQLVAAG 164 (169)
T ss_pred CHHHHHHHHHHHHhhcc
Confidence 99999999998877654
No 195
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.85 E-value=5.3e-20 Score=157.65 Aligned_cols=148 Identities=18% Similarity=0.183 Sum_probs=107.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCC-CCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPG-LTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQ 78 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~-~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~ 78 (419)
..||+++|++|||||||+++|.+.. +...+++ +..+.....+..++. .+.+|||||+. ++......
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~ 70 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKK--FMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE---------RFRAVTRS 70 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC--CCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcH---------HHHHHHHH
Confidence 5799999999999999999999753 3344433 333444445566664 56799999987 56666677
Q ss_pred HHHhCCEEEEEEeCCCCCCHhHHHHHHHHH---h---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeec
Q psy17089 79 AIIESDIIIFIVDGRQGLVEQDKLITNFLR---K---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISAL 146 (419)
Q Consensus 79 ~~~~~d~il~v~d~~~~~~~~~~~~~~~l~---~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~ 146 (419)
+++++|++++|+|..++.+. ..+..|+. . .+.|+++|+||+|+...+.. .++. ..+. +++++||+
T Consensus 71 ~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~ 147 (166)
T cd04122 71 YYRGAAGALMVYDITRRSTY--NHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGL-LFLECSAK 147 (166)
T ss_pred HhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCC-EEEEEECC
Confidence 88999999999998874332 22233332 2 35799999999999776543 2222 2344 78999999
Q ss_pred cCCCHHHHHHHHHHhcC
Q psy17089 147 YGNGIKNFLENILTIEL 163 (419)
Q Consensus 147 ~~~~v~~l~~~i~~~~~ 163 (419)
+|.|++++|..+.+.+.
T Consensus 148 ~~~~i~e~f~~l~~~~~ 164 (166)
T cd04122 148 TGENVEDAFLETAKKIY 164 (166)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999886553
No 196
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.85 E-value=2.1e-20 Score=160.34 Aligned_cols=145 Identities=16% Similarity=0.206 Sum_probs=104.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.+|+++|.+|||||||+++|.... +....|+++.+. ..+...+..+.+|||||+. ++......++.+
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~~~--~~~~~~t~g~~~--~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~~~~ 76 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQ--SVTTIPTVGFNV--ETVTYKNVKFNVWDVGGQD---------KIRPLWRHYYTG 76 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHccCC--CccccCCcccce--EEEEECCEEEEEEECCCCH---------HHHHHHHHHhcc
Confidence 589999999999999999998643 233334444333 3455678899999999997 555556678899
Q ss_pred CCEEEEEEeCCCC--CCHhHHHHHHHHHh---cCCCEEEEEeccCCCCCCcc---hhHHhcC-----CCCeEEEeeccCC
Q psy17089 83 SDIIIFIVDGRQG--LVEQDKLITNFLRK---SGQPIVLVINKSENINSSIS---LDFYELG-----IGNPHIISALYGN 149 (419)
Q Consensus 83 ~d~il~v~d~~~~--~~~~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~---~~~~~~~-----~~~~~~vSa~~~~ 149 (419)
+|+++||+|+.+. +.....++.+.++. .++|+++|+||+|+...... .++.... ...++++||++|.
T Consensus 77 a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~ 156 (168)
T cd04149 77 TQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGD 156 (168)
T ss_pred CCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCC
Confidence 9999999998874 22333444455543 36899999999998754322 2222111 1157899999999
Q ss_pred CHHHHHHHHHH
Q psy17089 150 GIKNFLENILT 160 (419)
Q Consensus 150 ~v~~l~~~i~~ 160 (419)
|++++|++|.+
T Consensus 157 gv~~~~~~l~~ 167 (168)
T cd04149 157 GLYEGLTWLSS 167 (168)
T ss_pred ChHHHHHHHhc
Confidence 99999999864
No 197
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.85 E-value=3.1e-20 Score=164.24 Aligned_cols=153 Identities=16% Similarity=0.072 Sum_probs=109.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEEC-C--eEEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG-K--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
.||+++|++|||||||+++|++.. ......++++.+.....+.++ + ..+.+|||||++ ++......+
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~-~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~---------~~~~~~~~~ 70 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGI-FSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE---------RFGGMTRVY 70 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCch---------hhhhhHHHH
Confidence 489999999999999999999753 212233444445555566665 4 467799999997 555666778
Q ss_pred HHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh-------cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEee
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK-------SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISA 145 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~-------~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa 145 (419)
+++++++++|+|.+++.+... ..+...+.. .+.|+++|+||+|+...... .++. ..+...++++||
T Consensus 71 ~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 150 (201)
T cd04107 71 YRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSA 150 (201)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeC
Confidence 899999999999886433222 122222221 36799999999999743332 2333 344457899999
Q ss_pred ccCCCHHHHHHHHHHhcCCc
Q psy17089 146 LYGNGIKNFLENILTIELPY 165 (419)
Q Consensus 146 ~~~~~v~~l~~~i~~~~~~~ 165 (419)
++|.|++++|+.+.+.+...
T Consensus 151 k~~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 151 KEGINIEEAMRFLVKNILAN 170 (201)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999877554
No 198
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.85 E-value=3.6e-20 Score=158.52 Aligned_cols=149 Identities=17% Similarity=0.189 Sum_probs=106.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecC-CCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVAN-YPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
.||+++|++|||||||+++|.+.. +... .++++.+.....+..++ ..+.+|||||+. ++......+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~---------~~~~~~~~~ 70 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDS--FTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQE---------RYRTITTAY 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH---------HHHHHHHHH
Confidence 689999999999999999999864 2222 23333333334445555 467899999986 455566778
Q ss_pred HHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
++++|++++|+|..+..+... ..+.+.++. .+.|+++|+||+|+...+.. .++. ..+. +++++||++|.
T Consensus 71 ~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 149 (165)
T cd01865 71 YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGF-EFFEASAKENI 149 (165)
T ss_pred ccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCC-EEEEEECCCCC
Confidence 899999999999876422221 223333332 35799999999999766543 2222 3445 78999999999
Q ss_pred CHHHHHHHHHHhcC
Q psy17089 150 GIKNFLENILTIEL 163 (419)
Q Consensus 150 ~v~~l~~~i~~~~~ 163 (419)
|++++++.+.+.+.
T Consensus 150 gv~~l~~~l~~~~~ 163 (165)
T cd01865 150 NVKQVFERLVDIIC 163 (165)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987654
No 199
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=2.9e-20 Score=178.35 Aligned_cols=162 Identities=25% Similarity=0.350 Sum_probs=122.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC-eEEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK-KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
..|+|||.||||||||+|+|++.+ ..++++|+||+....+.+.+.+ +.+.++||||+.+.... ...+...+..++.
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~--~~~Lg~~~l~~i~ 236 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASE--GAGLGIRFLKHLE 236 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccc--hhhHHHHHHHHHH
Confidence 479999999999999999999876 4688999999999999998875 57999999999743211 1123344556789
Q ss_pred hCCEEEEEEeCCC---C-CCHhHHHHHHHHHh-----cCCCEEEEEeccCCCCCCcc----hhHH-hcCC-CCeEEEeec
Q psy17089 82 ESDIIIFIVDGRQ---G-LVEQDKLITNFLRK-----SGQPIVLVINKSENINSSIS----LDFY-ELGI-GNPHIISAL 146 (419)
Q Consensus 82 ~~d~il~v~d~~~---~-~~~~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~----~~~~-~~~~-~~~~~vSa~ 146 (419)
.++++++|+|+.. . .......+.+.+.. .++|+++|+||+|+...... .++. ..+. ..++++||+
T Consensus 237 radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~ 316 (390)
T PRK12298 237 RCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAA 316 (390)
T ss_pred hCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECC
Confidence 9999999999762 1 22223455566554 36899999999999765443 1222 2233 268999999
Q ss_pred cCCCHHHHHHHHHHhcCCcch
Q psy17089 147 YGNGIKNFLENILTIELPYKK 167 (419)
Q Consensus 147 ~~~~v~~l~~~i~~~~~~~~~ 167 (419)
++.|++++++.|.+.+++.+.
T Consensus 317 tg~GIdeLl~~I~~~L~~~~~ 337 (390)
T PRK12298 317 SGLGVKELCWDLMTFIEENPR 337 (390)
T ss_pred CCcCHHHHHHHHHHHhhhCcc
Confidence 999999999999998877543
No 200
>KOG0087|consensus
Probab=99.85 E-value=5.4e-21 Score=160.49 Aligned_cols=153 Identities=24% Similarity=0.174 Sum_probs=123.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeE--EEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKS--FIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
.|||+++|++|||||-|+.+|... .+.....+++..+.....+.++|+. .+||||+||+ +++.....+
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrn-EF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQE---------RyrAitSaY 83 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRN-EFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQE---------RYRAITSAY 83 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhccc-ccCcccccceeEEEEeeceeecCcEEEEeeecccchh---------hhccccchh
Confidence 379999999999999999999854 4445556677788888888898865 4599999999 888888999
Q ss_pred HHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHHh-cCCCCeEEEeeccCC
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFYE-LGIGNPHIISALYGN 149 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~~-~~~~~~~~vSa~~~~ 149 (419)
+++|.++++|+|.+...+.+. ..|+++|+. .++++++|+||+||.+.+.+ ..+.. .++ .++++||..+.
T Consensus 84 YrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l-~f~EtSAl~~t 162 (222)
T KOG0087|consen 84 YRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGL-FFLETSALDAT 162 (222)
T ss_pred hcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCc-eEEEecccccc
Confidence 999999999999987655554 455555654 57899999999999997665 34443 344 78999999999
Q ss_pred CHHHHHHHHHHhcCCc
Q psy17089 150 GIKNFLENILTIELPY 165 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~~ 165 (419)
|++..|..+...+...
T Consensus 163 NVe~aF~~~l~~I~~~ 178 (222)
T KOG0087|consen 163 NVEKAFERVLTEIYKI 178 (222)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999998888765543
No 201
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.85 E-value=2.5e-20 Score=158.85 Aligned_cols=150 Identities=17% Similarity=0.206 Sum_probs=105.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
||+++|.+|||||||+++|++.. ......++...+........++. .+.+|||||++ ++......++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~~~ 71 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDG-YEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE---------RFQTMHASYYH 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCch---------hhhhhhHHHhC
Confidence 79999999999999999999753 21112222222333334445554 56799999987 56666777899
Q ss_pred hCCEEEEEEeCCCCCCHhH-HHHHHHHHh--cCCCEEEEEeccCCCCCCcc--hhHH-hcCCCCeEEEeeccCCCHHHHH
Q psy17089 82 ESDIIIFIVDGRQGLVEQD-KLITNFLRK--SGQPIVLVINKSENINSSIS--LDFY-ELGIGNPHIISALYGNGIKNFL 155 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~~-~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~--~~~~-~~~~~~~~~vSa~~~~~v~~l~ 155 (419)
++|++++|+|..++.+..+ ..+...+++ .+.|+++|+||+|+...... ..+. ..+. +++++||++|.|+++++
T Consensus 72 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~ 150 (161)
T cd04124 72 KAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQKKFNFAEKHNL-PLYYVSAADGTNVVKLF 150 (161)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHH
Confidence 9999999999887544333 334444444 37899999999998543221 2222 2233 78999999999999999
Q ss_pred HHHHHhcCC
Q psy17089 156 ENILTIELP 164 (419)
Q Consensus 156 ~~i~~~~~~ 164 (419)
+.+.+.+.+
T Consensus 151 ~~l~~~~~~ 159 (161)
T cd04124 151 QDAIKLAVS 159 (161)
T ss_pred HHHHHHHHh
Confidence 999876554
No 202
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.85 E-value=3e-20 Score=174.86 Aligned_cols=157 Identities=26% Similarity=0.372 Sum_probs=118.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC-eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK-KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
+..|+|+|.||||||||+|+|++.. ..+++++++|+++..+.+.+++ .++.+|||||+.+...+ .+.+...+...+
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~--~~gLg~~flrhi 233 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASE--GAGLGHRFLKHI 233 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcc--cccHHHHHHHHH
Confidence 3679999999999999999999865 3478899999999999999877 89999999999743211 113445566678
Q ss_pred HhCCEEEEEEeCCCC---CC-HhHHHHHHHHHh-----cCCCEEEEEeccCCCCCCcc---h-hHH-hcCCCCeEEEeec
Q psy17089 81 IESDIIIFIVDGRQG---LV-EQDKLITNFLRK-----SGQPIVLVINKSENINSSIS---L-DFY-ELGIGNPHIISAL 146 (419)
Q Consensus 81 ~~~d~il~v~d~~~~---~~-~~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~---~-~~~-~~~~~~~~~vSa~ 146 (419)
..++++++|+|+++. .. .....+.+++.. .++|+++|+||+|+...... . ++. ..+. +++++||+
T Consensus 234 erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~-~vi~iSAk 312 (329)
T TIGR02729 234 ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGK-PVFPISAL 312 (329)
T ss_pred HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCC-cEEEEEcc
Confidence 899999999998753 11 122334444443 36899999999999766443 1 222 2333 78999999
Q ss_pred cCCCHHHHHHHHHHhc
Q psy17089 147 YGNGIKNFLENILTIE 162 (419)
Q Consensus 147 ~~~~v~~l~~~i~~~~ 162 (419)
+++|++++++.+.+.+
T Consensus 313 tg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 313 TGEGLDELLYALAELL 328 (329)
T ss_pred CCcCHHHHHHHHHHHh
Confidence 9999999999998754
No 203
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.85 E-value=4.9e-20 Score=158.00 Aligned_cols=151 Identities=19% Similarity=0.104 Sum_probs=108.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
..||+++|++|||||||+++|.+.. +.....++.+.+.....+.+++. .+.+|||||+. .+......+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~---------~~~~~~~~~ 72 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDS-FNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE---------RFRTITTAY 72 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCc-CCcccccCccceEEEEEEEECCEEEEEEEEeCCchH---------HHHHHHHHH
Confidence 3689999999999999999999754 22222344445555556667764 67799999986 444555677
Q ss_pred HHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
+.++|++++|+|+.++.+... ..+...+.. .+.|+++|+||+|+...... .++. ..+. +++++||++|.
T Consensus 73 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 151 (167)
T cd01867 73 YRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGI-KFLETSAKANI 151 (167)
T ss_pred hCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 899999999999876433222 223333332 36799999999999865433 1222 3344 78999999999
Q ss_pred CHHHHHHHHHHhcC
Q psy17089 150 GIKNFLENILTIEL 163 (419)
Q Consensus 150 ~v~~l~~~i~~~~~ 163 (419)
|++++|+.+.+.+.
T Consensus 152 ~v~~~~~~i~~~~~ 165 (167)
T cd01867 152 NVEEAFFTLAKDIK 165 (167)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987653
No 204
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.85 E-value=7.3e-20 Score=154.61 Aligned_cols=160 Identities=24% Similarity=0.371 Sum_probs=124.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC-CceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCc-chhhHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPE-VKKGIMHEMTKQTKQA 79 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~-~~~~~~~~~~~~~~~~ 79 (419)
.|-|+++|++|||||||+|+|++++ -+.++..||.|+...+. .+++. +.++|.||+.-. -+.+..+.+...+..+
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff--~~~~~-~~lVDlPGYGyAkv~k~~~e~w~~~i~~Y 100 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFF--EVDDE-LRLVDLPGYGYAKVPKEVKEKWKKLIEEY 100 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEE--EecCc-EEEEeCCCcccccCCHHHHHHHHHHHHHH
Confidence 3689999999999999999999965 37889999999987754 44343 889999998633 1234444555555555
Q ss_pred HH---hCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc-------hhHHhcCC-CC--eEEEeec
Q psy17089 80 II---ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-------LDFYELGI-GN--PHIISAL 146 (419)
Q Consensus 80 ~~---~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~-------~~~~~~~~-~~--~~~vSa~ 146 (419)
+. +..++++++|+++++...|.++.+++...++|+++++||+|..+..+. .+...... .. ++..|+.
T Consensus 101 L~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~ 180 (200)
T COG0218 101 LEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSL 180 (200)
T ss_pred HhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecc
Confidence 55 456899999999999999999999999999999999999999887554 11222222 12 7789999
Q ss_pred cCCCHHHHHHHHHHhcCC
Q psy17089 147 YGNGIKNFLENILTIELP 164 (419)
Q Consensus 147 ~~~~v~~l~~~i~~~~~~ 164 (419)
.+.|++++...|.+.+.+
T Consensus 181 ~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 181 KKKGIDELKAKILEWLKE 198 (200)
T ss_pred cccCHHHHHHHHHHHhhc
Confidence 999999999999876543
No 205
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.85 E-value=5.2e-20 Score=157.48 Aligned_cols=149 Identities=24% Similarity=0.183 Sum_probs=108.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|++|||||||+++|++... .....++++.+.....+..++. .+.+|||||+. ++......++
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~~ 73 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEF-NLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE---------RYRAITSAYY 73 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCChH---------HHHHHHHHHH
Confidence 5899999999999999999997642 2334556666666667777774 57799999986 5555666778
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.+++++++|+|.++..+..+ ..++..++. .+.|+++|+||+|+...+.. ..+. ..+. .++++||++|.|
T Consensus 74 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 152 (165)
T cd01868 74 RGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGL-SFIETSALDGTN 152 (165)
T ss_pred CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCC-EEEEEECCCCCC
Confidence 89999999999886433322 222333332 25899999999999765443 2222 2333 689999999999
Q ss_pred HHHHHHHHHHhc
Q psy17089 151 IKNFLENILTIE 162 (419)
Q Consensus 151 v~~l~~~i~~~~ 162 (419)
++++++.+.+.+
T Consensus 153 v~~l~~~l~~~i 164 (165)
T cd01868 153 VEEAFKQLLTEI 164 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
No 206
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.85 E-value=5.4e-20 Score=157.61 Aligned_cols=148 Identities=15% Similarity=0.200 Sum_probs=106.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
||+++|++|||||||+|+|++.. ......++++.+.....+.+++ ..+.+|||||+. ++......++.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~~ 71 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGR-FVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP---------EYLEVRNEFYK 71 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CCCCCCCccceeEEEEEEEECCeEEEEEEEECCccH---------HHHHHHHHHhc
Confidence 79999999999999999999864 2233344555555555666665 466799999986 45556667789
Q ss_pred hCCEEEEEEeCCCCCCHh--HHHHHHHHHh-------cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeec
Q psy17089 82 ESDIIIFIVDGRQGLVEQ--DKLITNFLRK-------SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISAL 146 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~--~~~~~~~l~~-------~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~ 146 (419)
++|++++|+|.+++.+.. ..|+..+.+. .+.|+++|+||+|+...... ..+. ..+ .+++++||+
T Consensus 72 ~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 150 (168)
T cd04119 72 DTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKG-FKYFETSAC 150 (168)
T ss_pred cCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcC-CeEEEEECC
Confidence 999999999988643322 2232222222 24799999999999743332 1222 334 378999999
Q ss_pred cCCCHHHHHHHHHHhc
Q psy17089 147 YGNGIKNFLENILTIE 162 (419)
Q Consensus 147 ~~~~v~~l~~~i~~~~ 162 (419)
+|.|++++++.+.+.+
T Consensus 151 ~~~gi~~l~~~l~~~l 166 (168)
T cd04119 151 TGEGVNEMFQTLFSSI 166 (168)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998765
No 207
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.85 E-value=1.1e-20 Score=159.66 Aligned_cols=150 Identities=28% Similarity=0.382 Sum_probs=112.6
Q ss_pred CEEEEEEeCCCCCCHhHHHHH-HHHHhcCCCEEEEEeccCCCCCCcchh----HHhcCCCCeEEEeeccCCCHHHHHHHH
Q psy17089 84 DIIIFIVDGRQGLVEQDKLIT-NFLRKSGQPIVLVINKSENINSSISLD----FYELGIGNPHIISALYGNGIKNFLENI 158 (419)
Q Consensus 84 d~il~v~d~~~~~~~~~~~~~-~~l~~~~~p~ilv~NK~Dl~~~~~~~~----~~~~~~~~~~~vSa~~~~~v~~l~~~i 158 (419)
|++++|+|++++....+.++. ..+...++|+++|+||+|+.......+ +.......++++||+++.|++++++.+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i 80 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAF 80 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHH
Confidence 789999999887777666666 566667899999999999976543322 223334467999999999999999998
Q ss_pred HHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCC
Q psy17089 159 LTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTA 238 (419)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtp 238 (419)
.+.+.+.... ...........+++++|.||+|||||+|+|++.....+++.+++|.+...... +..+.++|||
T Consensus 81 ~~~~~~~~~~----~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtP 153 (155)
T cd01849 81 TKQTNSNLKS----YAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTP 153 (155)
T ss_pred HHHhHHHHHH----HHhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECC
Confidence 7764322110 00011123568899999999999999999999877778889999998766543 4679999999
Q ss_pred CC
Q psy17089 239 GI 240 (419)
Q Consensus 239 G~ 240 (419)
|+
T Consensus 154 G~ 155 (155)
T cd01849 154 GI 155 (155)
T ss_pred CC
Confidence 95
No 208
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.85 E-value=4.2e-20 Score=165.02 Aligned_cols=152 Identities=18% Similarity=0.189 Sum_probs=110.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC---eEEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK---KSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
.||+++|++|||||||+++|++.. +.....++++.+.....+.+++ ..+.+|||||+. .+......+
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~-~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~---------~~~~l~~~~ 70 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEG-FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS---------IGGKMLDKY 70 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH---------HHHHHHHHH
Confidence 389999999999999999999753 2223345566676666677653 577899999986 455566677
Q ss_pred HHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh------cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeec
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK------SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISAL 146 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~------~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~ 146 (419)
++++|++++|+|.++..+... ..+...+.+ .+.|+++|+||+|+...+.. ..+. ..+. .++++||+
T Consensus 71 ~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~~iSAk 149 (215)
T cd04109 71 IYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGM-ESCLVSAK 149 (215)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEEECC
Confidence 899999999999886433322 233344433 23579999999999755443 2222 3344 68999999
Q ss_pred cCCCHHHHHHHHHHhcCCc
Q psy17089 147 YGNGIKNFLENILTIELPY 165 (419)
Q Consensus 147 ~~~~v~~l~~~i~~~~~~~ 165 (419)
+|.|++++|+.+.+.+...
T Consensus 150 tg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 150 TGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999877653
No 209
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.85 E-value=3.3e-20 Score=161.59 Aligned_cols=156 Identities=14% Similarity=0.126 Sum_probs=105.7
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+.++|+++|.+|||||||++++.+.......+ |.......+..++.++.+|||||+. .+... ...
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~-~~~ 80 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQHQP----TQHPTSEELAIGNIKFTTFDLGGHQ----------QARRL-WKD 80 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcccCC----ccccceEEEEECCEEEEEEECCCCH----------HHHHH-HHH
Confidence 44899999999999999999999864322211 2333334556677899999999983 22212 236
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHH----HcCCcEEEEEEcccCCChhhHHHHHHHHHHHc-C------CCCCC
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIY----ESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKL-N------FLSFA 328 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~----~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~-~------~~~~~ 328 (419)
+++.+|++++|+|++++.+.... ..+..+. ..+.|+++|+||+|+......+++.+.+.-.. . ..+..
T Consensus 81 ~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~ 160 (184)
T smart00178 81 YFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPL 160 (184)
T ss_pred HhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCcee
Confidence 78899999999999986443332 2333332 25799999999999864333333333322100 0 11245
Q ss_pred cEEEEeccCCCCHHHHHHHHHHH
Q psy17089 329 MFNFISAIKLNNINSFMESINHV 351 (419)
Q Consensus 329 ~~~~~SA~~g~gv~~l~~~i~~~ 351 (419)
.++++||++|.|+++++++|.+.
T Consensus 161 ~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 161 EVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEEEeecccCCChHHHHHHHHhh
Confidence 69999999999999999999753
No 210
>KOG0095|consensus
Probab=99.85 E-value=1.3e-20 Score=148.37 Aligned_cols=153 Identities=18% Similarity=0.079 Sum_probs=119.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
++||+++|..|||||.|..+|... -+......++..|.....++++|. ++.+|||+|++ +|+..+..+
T Consensus 7 lfkivlvgnagvgktclvrrftqg-lfppgqgatigvdfmiktvev~gekiklqiwdtagqe---------rfrsitqsy 76 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQG-LFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQE---------RFRSITQSY 76 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhcc-CCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchH---------HHHHHHHHH
Confidence 589999999999999999999864 343445556778888888999885 56699999998 899999999
Q ss_pred HHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHHhcCCCCeEEEeeccCCC
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFYELGIGNPHIISALYGNG 150 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~~~~~~~~~~vSa~~~~~ 150 (419)
++.|+.+++|+|.++..+..- .+|+..+.. ...-.|+|+||+|+.+++++ .+|......-++++||+...|
T Consensus 77 yrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~n 156 (213)
T KOG0095|consen 77 YRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADN 156 (213)
T ss_pred hhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhh
Confidence 999999999999886444322 334444433 23455999999999998876 455555555678899999999
Q ss_pred HHHHHHHHHHhcCC
Q psy17089 151 IKNFLENILTIELP 164 (419)
Q Consensus 151 v~~l~~~i~~~~~~ 164 (419)
++.||..++-.+..
T Consensus 157 ve~lf~~~a~rli~ 170 (213)
T KOG0095|consen 157 VEKLFLDLACRLIS 170 (213)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988765543
No 211
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.85 E-value=3.8e-20 Score=162.42 Aligned_cols=152 Identities=16% Similarity=0.208 Sum_probs=113.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC------CceecCCCCCCccceEEEEEEC--------------CeEEEEEEcCCCCCc
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSR------DALVANYPGLTRDRHYGEGYIG--------------KKSFIIIDTGGFEPE 63 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~------~~~~~~~~~~t~~~~~~~~~~~--------------~~~~~liDtpG~~~~ 63 (419)
+|+++|++|+|||||+++|++.. .......+++|.+.....+.+. +..+.+|||||+.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-- 79 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA-- 79 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH--
Confidence 79999999999999999999731 1122334577888777666665 6789999999985
Q ss_pred chhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc-------hhH----
Q psy17089 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-------LDF---- 132 (419)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~-------~~~---- 132 (419)
.+...+...+..+|++++|+|+..+....+.....+....+.|+++|+||+|+...... .+.
T Consensus 80 -------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~ 152 (192)
T cd01889 80 -------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT 152 (192)
T ss_pred -------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHH
Confidence 45555566678899999999998877666655455555568899999999999754321 111
Q ss_pred H-h--cCCCCeEEEeeccCCCHHHHHHHHHHhcCC
Q psy17089 133 Y-E--LGIGNPHIISALYGNGIKNFLENILTIELP 164 (419)
Q Consensus 133 ~-~--~~~~~~~~vSa~~~~~v~~l~~~i~~~~~~ 164 (419)
+ . ...-+++++||++|.|+++|++++...++.
T Consensus 153 ~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 153 LEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 1 1 112378999999999999999999987664
No 212
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.85 E-value=1.6e-20 Score=164.50 Aligned_cols=147 Identities=29% Similarity=0.328 Sum_probs=110.7
Q ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc----hhHH------hcC--CCC
Q psy17089 72 MTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDFY------ELG--IGN 139 (419)
Q Consensus 72 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~----~~~~------~~~--~~~ 139 (419)
+......++.++|++++|+|+++........+. ....++|+++|+||+|+...... ..+. ..+ ...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~--~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLR--LFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKD 101 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhHH--HhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCccc
Confidence 466777888999999999999875444444431 22357899999999999754432 1221 122 236
Q ss_pred eEEEeeccCCCHHHHHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCc--------eeeec
Q psy17089 140 PHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGEN--------RVITY 211 (419)
Q Consensus 140 ~~~vSa~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~--------~~~~~ 211 (419)
++++||+++.|++++++.|.+.++. +.+++++|.+|||||||+|+|++.. ...++
T Consensus 102 i~~vSA~~~~gi~eL~~~l~~~l~~-----------------~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~ 164 (190)
T cd01855 102 VILISAKKGWGVEELINAIKKLAKK-----------------GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTS 164 (190)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhc-----------------CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccC
Confidence 8999999999999999999987652 2479999999999999999999753 23567
Q ss_pred CCCCccceeeeEeeEEeCeeEEEEeCCCC
Q psy17089 212 DTPGTTRDSIKSLFEYNNKKYILIDTAGI 240 (419)
Q Consensus 212 ~~~~~t~~~~~~~~~~~~~~~~liDtpG~ 240 (419)
..||+|++.....+. ..+.+|||||+
T Consensus 165 ~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 165 PIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred CCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 889999987665552 26899999995
No 213
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.85 E-value=4.9e-20 Score=161.57 Aligned_cols=152 Identities=17% Similarity=0.147 Sum_probs=108.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecC-CCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVAN-YPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
.||+++|++|||||||+++|.+... .... .++++.+.....+.+++. .+.||||||+. ++......+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~ 70 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAF-LNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQE---------RFRSVTHAY 70 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcH---------HHHHhhHHH
Confidence 3899999999999999999997642 2223 334444554445666664 67799999986 555556677
Q ss_pred HHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
+.++|++++|+|..+..+... ..+...+.. .+.|+++|+||+|+...+.. ..+. ..+. +++++||++|.
T Consensus 71 ~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~-~~~e~Sa~~~~ 149 (191)
T cd04112 71 YRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGV-PFMETSAKTGL 149 (191)
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 889999999999886433222 223333333 36799999999999754433 1222 2343 78999999999
Q ss_pred CHHHHHHHHHHhcCCc
Q psy17089 150 GIKNFLENILTIELPY 165 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~~ 165 (419)
|+++++..|.+.+.+.
T Consensus 150 ~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 150 NVELAFTAVAKELKHR 165 (191)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999887665
No 214
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.85 E-value=4.5e-20 Score=157.52 Aligned_cols=148 Identities=21% Similarity=0.192 Sum_probs=106.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|++|||||||+++++... +...+.++..+.....+.+++. .+.+|||||++ ++......++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 70 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGT--FIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE---------QFASMRDLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCCCCCCchhheEEEEEEECCEEEEEEEEECCCcc---------cccchHHHHH
Confidence 689999999999999999999753 3344444445555566777775 46689999987 4445556678
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
.++|++++|+|..+..+..+ ..+...+.+ .++|+++|+||+|+...... ..+. ..+. +++++||++|.
T Consensus 71 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 149 (163)
T cd04176 71 KNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGC-PFMETSAKSKT 149 (163)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCC-EEEEecCCCCC
Confidence 99999999999886433222 222233332 47899999999998654432 1111 2344 78999999999
Q ss_pred CHHHHHHHHHHhc
Q psy17089 150 GIKNFLENILTIE 162 (419)
Q Consensus 150 ~v~~l~~~i~~~~ 162 (419)
|+++++..+.+.+
T Consensus 150 ~v~~l~~~l~~~l 162 (163)
T cd04176 150 MVNELFAEIVRQM 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999998653
No 215
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.85 E-value=5.5e-20 Score=159.72 Aligned_cols=150 Identities=17% Similarity=0.155 Sum_probs=106.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEEC------------CeEEEEEEcCCCCCcchhhHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG------------KKSFIIIDTGGFEPEVKKGIM 69 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~------------~~~~~liDtpG~~~~~~~~~~ 69 (419)
..||+++|++|||||||+++|.+.. +.....++++.+.....+.+. ...+.+|||||++
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-------- 74 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNK-FNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE-------- 74 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC-CCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH--------
Confidence 3589999999999999999998753 222223344444444444443 2578899999987
Q ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCC
Q psy17089 70 HEMTKQTKQAIIESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIG 138 (419)
Q Consensus 70 ~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~ 138 (419)
++......+++++|++++|+|..+..+... ..+...+.. .+.|+++|+||+|+...+.. .++. ..+.
T Consensus 75 -~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~- 152 (180)
T cd04127 75 -RFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGI- 152 (180)
T ss_pred -HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCC-
Confidence 566667778899999999999886433222 222333332 26799999999999765443 2222 3444
Q ss_pred CeEEEeeccCCCHHHHHHHHHHhc
Q psy17089 139 NPHIISALYGNGIKNFLENILTIE 162 (419)
Q Consensus 139 ~~~~vSa~~~~~v~~l~~~i~~~~ 162 (419)
+++++||++|.|++++++.+.+.+
T Consensus 153 ~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 153 PYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998754
No 216
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.85 E-value=6.2e-20 Score=160.49 Aligned_cols=152 Identities=24% Similarity=0.297 Sum_probs=118.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceec---------------CCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVA---------------NYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGI 68 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 68 (419)
+|+|+|.+|+|||||+|+|++....... ...++|.+.......+.+..+.+|||||+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~------- 73 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHE------- 73 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcH-------
Confidence 4899999999999999999876432111 123466666666777788899999999987
Q ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc-------hhHH-hc-----
Q psy17089 69 MHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-------LDFY-EL----- 135 (419)
Q Consensus 69 ~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~-------~~~~-~~----- 135 (419)
.+......+++.+|++++|+|+.++.......++..+...+.|+++|+||+|+...... .+.+ ..
T Consensus 74 --~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (189)
T cd00881 74 --DFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFIST 151 (189)
T ss_pred --HHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccch
Confidence 45556677788999999999999887777777777777789999999999999874332 1112 11
Q ss_pred --------CCCCeEEEeeccCCCHHHHHHHHHHhcCC
Q psy17089 136 --------GIGNPHIISALYGNGIKNFLENILTIELP 164 (419)
Q Consensus 136 --------~~~~~~~vSa~~~~~v~~l~~~i~~~~~~ 164 (419)
...+++++||++|.|++++++.+.+.+++
T Consensus 152 ~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 152 KEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred hhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 23578999999999999999999988764
No 217
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=5.4e-20 Score=179.33 Aligned_cols=159 Identities=19% Similarity=0.209 Sum_probs=119.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
..|+|||.||||||||+|+|++.+. .++++|++|+++..+.+.+++.++.+|||||+.+.. +..+.+...++..+..
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~~~~f~laDtPGliega--s~g~gLg~~fLrhier 236 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGA--SEGKGLGLDFLRHIER 236 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEECCeEEEEEECCCCcccc--chhhHHHHHHHHHHHh
Confidence 5899999999999999999998754 468899999999999999999999999999987432 1112344455667889
Q ss_pred CCEEEEEEeCCCCC----CH-hHHHHHHHHH--------------hcCCCEEEEEeccCCCCCCcch----hHH-hcCCC
Q psy17089 83 SDIIIFIVDGRQGL----VE-QDKLITNFLR--------------KSGQPIVLVINKSENINSSISL----DFY-ELGIG 138 (419)
Q Consensus 83 ~d~il~v~d~~~~~----~~-~~~~~~~~l~--------------~~~~p~ilv~NK~Dl~~~~~~~----~~~-~~~~~ 138 (419)
+|++++|+|++... .. ....+.+.|. ..++|+++|+||+|+....... +.+ ..+.
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~- 315 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGW- 315 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCC-
Confidence 99999999986411 11 1122222232 2468999999999997654431 122 3344
Q ss_pred CeEEEeeccCCCHHHHHHHHHHhcCCc
Q psy17089 139 NPHIISALYGNGIKNFLENILTIELPY 165 (419)
Q Consensus 139 ~~~~vSa~~~~~v~~l~~~i~~~~~~~ 165 (419)
+++++||+++.|+++|+.+|.+.+...
T Consensus 316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 316 PVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 789999999999999999999877553
No 218
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.85 E-value=5.1e-20 Score=161.38 Aligned_cols=156 Identities=15% Similarity=0.117 Sum_probs=105.9
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+..+|+++|++|||||||++++.+...... . .|.......+.+++..+.+|||||+ +.+. .....
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~--~--~T~~~~~~~i~~~~~~~~l~D~~G~----------~~~~-~~~~~ 82 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQH--V--PTLHPTSEELTIGNIKFKTFDLGGH----------EQAR-RLWKD 82 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCccc--C--CccCcceEEEEECCEEEEEEECCCC----------HHHH-HHHHH
Confidence 458999999999999999999997653221 1 1233334556677889999999998 2232 22235
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHH----HcCCcEEEEEEcccCCChhhHHHHHHHHHHHc-----------CC
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIY----ESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKL-----------NF 324 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~----~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~-----------~~ 324 (419)
+++.+|++++|+|+++..+.... .++..+. ..+.|+++|+||+|+.......+..+.+...- ..
T Consensus 83 ~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (190)
T cd00879 83 YFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSG 162 (190)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccC
Confidence 78899999999999976444332 2333332 25699999999999965333333332222100 00
Q ss_pred CCCCcEEEEeccCCCCHHHHHHHHHHH
Q psy17089 325 LSFAMFNFISAIKLNNINSFMESINHV 351 (419)
Q Consensus 325 ~~~~~~~~~SA~~g~gv~~l~~~i~~~ 351 (419)
....+++++||++|.|++++|+++.+.
T Consensus 163 ~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 163 IRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred ceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 122468999999999999999999764
No 219
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.85 E-value=3.2e-20 Score=166.14 Aligned_cols=153 Identities=15% Similarity=0.174 Sum_probs=104.5
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCcc-ceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTT-RDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
+||+++|.+|||||||+++|.+.... ...++.+. .+.....+..++ ..+.+|||||+. .+. . .
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~----------~~~--~-~ 66 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE----------MWT--E-D 66 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc----------hHH--H-h
Confidence 48999999999999999999765422 12222222 134444455543 567889999994 111 1 1
Q ss_pred HHHh-hcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHH-HHHHHHHHHcCCCCCCcEEE
Q psy17089 260 KSIL-EANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 260 ~~~~-~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 332 (419)
.+++ .+|++++|+|++++.++... .++..+.. .+.|+++|+||+|+....... +....+.. ..++++++
T Consensus 67 ~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~----~~~~~~~e 142 (221)
T cd04148 67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAV----VFDCKFIE 142 (221)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHH----HcCCeEEE
Confidence 3445 89999999999998766654 35555544 468999999999996543211 11112222 12368999
Q ss_pred EeccCCCCHHHHHHHHHHHHh
Q psy17089 333 ISAIKLNNINSFMESINHVYD 353 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~ 353 (419)
+||++|.|++++|+.+.+.+.
T Consensus 143 ~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 143 TSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred ecCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999998875
No 220
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.85 E-value=2.9e-20 Score=159.98 Aligned_cols=155 Identities=17% Similarity=0.144 Sum_probs=104.6
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|||||||+++|++... . ..+.++..+.........+ ..+.+|||||+.+... . ...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~----------~-~~~ 67 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKF-P-TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR----------L-RPL 67 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-C-CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc----------c-chh
Confidence 5899999999999999999998753 1 2222333333333444443 3688899999954321 1 113
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEEcccCCChhhHHH---------HHHHHHHHcCCCCC
Q psy17089 261 SILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQRKI---------IKNNIKKKLNFLSF 327 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~---------~~~~~~~~~~~~~~ 327 (419)
.++.+|++++|+|+++..++... .++..+.. .+.|+++|+||+|+.+...... ..+.........+.
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 147 (171)
T cd00157 68 SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGA 147 (171)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCC
Confidence 55789999999999987665553 34554444 3599999999999976543211 01222222233333
Q ss_pred CcEEEEeccCCCCHHHHHHHHHH
Q psy17089 328 AMFNFISAIKLNNINSFMESINH 350 (419)
Q Consensus 328 ~~~~~~SA~~g~gv~~l~~~i~~ 350 (419)
.+++++||++|.|++++++.+.+
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 148 IGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred eEEEEeecCCCCCHHHHHHHHhh
Confidence 48999999999999999998865
No 221
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.85 E-value=3.8e-20 Score=158.87 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=106.3
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
++|+++|.+|||||||++++.+... ...+.+++.+.....+..++ ..+.+|||||+.++. .. ...
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~-~~~ 68 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF--IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFT----------AM-REL 68 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEeCCCcccch----------hh-hHH
Confidence 6899999999999999999997642 23334444444444445544 467789999995543 11 224
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHH-HHHHHH----HcCCcEEEEEEcccCCChhhHH-HHHHHHHHHcCCCCCCcEEEEe
Q psy17089 261 SILEANVVILLLDAQQNISAQDIN-IANFIY----ESGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~----~~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S 334 (419)
+++.++++++|+|++++.+.+... +...+. ..+.|+++|+||+|+....... .....+.+ ..+.++++++|
T Consensus 69 ~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~S 145 (168)
T cd04177 69 YIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQ---QWGNVPFYETS 145 (168)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHH---HcCCceEEEee
Confidence 678899999999999876665543 333333 2479999999999986533211 11112222 22336899999
Q ss_pred ccCCCCHHHHHHHHHHHH
Q psy17089 335 AIKLNNINSFMESINHVY 352 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~ 352 (419)
|++|.|++++|+++...+
T Consensus 146 A~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 146 ARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998754
No 222
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.84 E-value=8.9e-20 Score=156.08 Aligned_cols=146 Identities=20% Similarity=0.207 Sum_probs=101.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|++|||||||++++++.. +...+.++...........++ ..+.+|||||+. ++......++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~--f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 70 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGT--FRESYIPTIEDTYRQVISCSKNICTLQITDTTGSH---------QFPAMQRLSI 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCCCcCCcchheEEEEEEECCEEEEEEEEECCCCC---------cchHHHHHHh
Confidence 489999999999999999999764 222332222222333334433 467799999997 3334445677
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh------cCCCEEEEEeccCCCCCCcc--h---hHH-hcCCCCeEEEeecc
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK------SGQPIVLVINKSENINSSIS--L---DFY-ELGIGNPHIISALY 147 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~------~~~p~ilv~NK~Dl~~~~~~--~---~~~-~~~~~~~~~vSa~~ 147 (419)
..++++++|+|..+..+... ..+.+.++. .+.|+++|+||+|+...+.. . .+. ..+. .++++||++
T Consensus 71 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA~~ 149 (165)
T cd04140 71 SKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNC-AFMETSAKT 149 (165)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCC-cEEEeecCC
Confidence 89999999999887544332 334444443 36899999999999775444 1 122 2333 789999999
Q ss_pred CCCHHHHHHHHHH
Q psy17089 148 GNGIKNFLENILT 160 (419)
Q Consensus 148 ~~~v~~l~~~i~~ 160 (419)
|.|++++|+.|..
T Consensus 150 g~~v~~~f~~l~~ 162 (165)
T cd04140 150 NHNVQELFQELLN 162 (165)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999999875
No 223
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.84 E-value=6.6e-20 Score=156.25 Aligned_cols=146 Identities=20% Similarity=0.224 Sum_probs=101.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhC
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 83 (419)
+|+++|++|||||||+++|.+.........|++ ......+...+..+.+|||||.. ++......++.++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~--g~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~~~~~ 69 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTV--GFNVESFEKGNLSFTAFDMSGQG---------KYRGLWEHYYKNI 69 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCcc--ccceEEEEECCEEEEEEECCCCH---------hhHHHHHHHHccC
Confidence 589999999999999999998532111112222 22333455678899999999987 4555666778999
Q ss_pred CEEEEEEeCCCCCCH--hHHHHHHHHHh-----cCCCEEEEEeccCCCCCCcch---hHHhcC-----CCCeEEEeeccC
Q psy17089 84 DIIIFIVDGRQGLVE--QDKLITNFLRK-----SGQPIVLVINKSENINSSISL---DFYELG-----IGNPHIISALYG 148 (419)
Q Consensus 84 d~il~v~d~~~~~~~--~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~~---~~~~~~-----~~~~~~vSa~~~ 148 (419)
|+++||+|++++.+. ...++..+++. .++|+++|+||+|+....... +..... ...++++||++|
T Consensus 70 d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g 149 (162)
T cd04157 70 QGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTG 149 (162)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCC
Confidence 999999999865432 22333333331 468999999999997653321 111111 113689999999
Q ss_pred CCHHHHHHHHHH
Q psy17089 149 NGIKNFLENILT 160 (419)
Q Consensus 149 ~~v~~l~~~i~~ 160 (419)
.|+++++++|.+
T Consensus 150 ~gv~~~~~~l~~ 161 (162)
T cd04157 150 EGLDEGVQWLQA 161 (162)
T ss_pred CchHHHHHHHhc
Confidence 999999999864
No 224
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.84 E-value=4e-20 Score=159.81 Aligned_cols=157 Identities=17% Similarity=0.144 Sum_probs=104.7
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
.||+++|.+|||||||+++|.+... ...+.++..+.....+..++. .+.+|||||+.+. .... ..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~-~~ 68 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY----------DRLR-PL 68 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCccccceEEEEEECCEEEEEEEEeCCCchhh----------hhcc-cc
Confidence 5899999999999999999997642 223333333333344555554 5678999998332 2111 13
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEEcccCCChhhHHH-H---------HHHHHHHcCCCC
Q psy17089 261 SILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQRKI-I---------KNNIKKKLNFLS 326 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~-~---------~~~~~~~~~~~~ 326 (419)
+++.+|++++|+|+++..++.+. .+...+.. .+.|+++|+||+|+.+...... + .....+.....+
T Consensus 69 ~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~ 148 (175)
T cd01870 69 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIG 148 (175)
T ss_pred ccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcC
Confidence 67889999999999987665554 24444443 4789999999999865322110 0 011111122223
Q ss_pred CCcEEEEeccCCCCHHHHHHHHHHHH
Q psy17089 327 FAMFNFISAIKLNNINSFMESINHVY 352 (419)
Q Consensus 327 ~~~~~~~SA~~g~gv~~l~~~i~~~~ 352 (419)
..+++++||++|.|++++|+.+.+.+
T Consensus 149 ~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 149 AFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred CcEEEEeccccCcCHHHHHHHHHHHh
Confidence 45899999999999999999998653
No 225
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.84 E-value=5.4e-20 Score=158.70 Aligned_cols=155 Identities=17% Similarity=0.105 Sum_probs=103.6
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+.++|+++|++|||||||++++.+.......+..|. ....+...+..+.+|||||+.. +. .....
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~----~~~~i~~~~~~~~~~D~~G~~~----------~~-~~~~~ 77 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHITPTQGF----NIKTVQSDGFKLNVWDIGGQRA----------IR-PYWRN 77 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCc----ceEEEEECCEEEEEEECCCCHH----------HH-HHHHH
Confidence 468999999999999999999998753323233332 2234556688999999999832 21 12235
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHH----HHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFI----YESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~----~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
+++.+|++++|+|+++..+..+. .++..+ ...++|+++++||+|+.......++.+.+....-.....+++++||
T Consensus 78 ~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa 157 (173)
T cd04155 78 YFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSA 157 (173)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeEC
Confidence 67889999999999975443332 222222 2357999999999999765433333332211000111235789999
Q ss_pred cCCCCHHHHHHHHHH
Q psy17089 336 IKLNNINSFMESINH 350 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~ 350 (419)
++|.|++++|++|.+
T Consensus 158 ~~~~gi~~~~~~l~~ 172 (173)
T cd04155 158 KTGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCCHHHHHHHHhc
Confidence 999999999999875
No 226
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.84 E-value=1.3e-19 Score=153.31 Aligned_cols=161 Identities=23% Similarity=0.340 Sum_probs=122.5
Q ss_pred EEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEe-CeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhc
Q psy17089 187 IVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN-NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEA 265 (419)
Q Consensus 187 l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~a 265 (419)
++|.+|+|||||+|++.+......+..++++........... +..+.+|||||+.......... .......++.+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~----~~~~~~~~~~~ 76 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRER----EELARRVLERA 76 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhH----HHHHHHHHHhC
Confidence 579999999999999998876656677788877776666555 6799999999997765332111 12334577889
Q ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHHHHH
Q psy17089 266 NVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFM 345 (419)
Q Consensus 266 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~ 345 (419)
|++++|+|+..........+.......+.|+++|+||+|+.......................+++++||+++.|+++++
T Consensus 77 d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 77 DLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHH
Confidence 99999999999887777766677777899999999999998765544332212223334456799999999999999999
Q ss_pred HHHHHH
Q psy17089 346 ESINHV 351 (419)
Q Consensus 346 ~~i~~~ 351 (419)
+.+.+.
T Consensus 157 ~~l~~~ 162 (163)
T cd00880 157 EALIEA 162 (163)
T ss_pred HHHHhh
Confidence 998764
No 227
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.84 E-value=7.1e-20 Score=158.19 Aligned_cols=147 Identities=19% Similarity=0.251 Sum_probs=104.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.||+++|.+|||||||+++|.... +....|++..+ .......+..+.+|||||+. ++......++++
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~--~~~~~~t~~~~--~~~~~~~~~~l~l~D~~G~~---------~~~~~~~~~~~~ 80 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGE--SVTTIPTIGFN--VETVTYKNISFTVWDVGGQD---------KIRPLWRHYYTN 80 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCC--CCCcCCccccc--eEEEEECCEEEEEEECCCCh---------hhHHHHHHHhCC
Confidence 589999999999999999996432 22333443333 33456678899999999987 555666777899
Q ss_pred CCEEEEEEeCCCCC--CHhHHHHHHHHHh---cCCCEEEEEeccCCCCCCcchhHH-hcCCC-------CeEEEeeccCC
Q psy17089 83 SDIIIFIVDGRQGL--VEQDKLITNFLRK---SGQPIVLVINKSENINSSISLDFY-ELGIG-------NPHIISALYGN 149 (419)
Q Consensus 83 ~d~il~v~d~~~~~--~~~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~~~~-~~~~~-------~~~~vSa~~~~ 149 (419)
+|+++||+|++++. .....++...++. .+.|+++|+||+|+.......++. .++.. .++++||++|.
T Consensus 81 ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 160 (175)
T smart00177 81 TQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGD 160 (175)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCC
Confidence 99999999988643 2233444444432 357999999999997654322221 12221 35689999999
Q ss_pred CHHHHHHHHHHhc
Q psy17089 150 GIKNFLENILTIE 162 (419)
Q Consensus 150 ~v~~l~~~i~~~~ 162 (419)
|+++++++|.+.+
T Consensus 161 gv~e~~~~l~~~~ 173 (175)
T smart00177 161 GLYEGLTWLSNNL 173 (175)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998653
No 228
>PRK04213 GTP-binding protein; Provisional
Probab=99.84 E-value=9.2e-20 Score=161.27 Aligned_cols=158 Identities=31% Similarity=0.419 Sum_probs=109.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcc--hhhHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV--KKGIMHEMTKQTKQA 79 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~--~~~~~~~~~~~~~~~ 79 (419)
.++|+++|++|||||||+|+|.+.. ...+..+++|++... +.++ .+.+|||||+.... .+...+.+...+..+
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNH--YDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceE--Eeec--ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 3689999999999999999999865 445567788877553 3333 68999999964211 111123344433333
Q ss_pred ----HHhCCEEEEEEeCCCCC-----------CHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc--hhHH-hcCC----
Q psy17089 80 ----IIESDIIIFIVDGRQGL-----------VEQDKLITNFLRKSGQPIVLVINKSENINSSIS--LDFY-ELGI---- 137 (419)
Q Consensus 80 ----~~~~d~il~v~d~~~~~-----------~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~--~~~~-~~~~---- 137 (419)
+..++++++|+|+.... ...+..+...+...++|+++|+||+|+...... .++. .++.
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 163 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPW 163 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHHHHHHHHHHHhcCCccc
Confidence 44568999999975421 123355666776678999999999999765421 2222 2232
Q ss_pred ----CCeEEEeeccCCCHHHHHHHHHHhcCCc
Q psy17089 138 ----GNPHIISALYGNGIKNFLENILTIELPY 165 (419)
Q Consensus 138 ----~~~~~vSa~~~~~v~~l~~~i~~~~~~~ 165 (419)
..++++||++| |+++++++|.+.+++.
T Consensus 164 ~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 164 RQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred cccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 14799999999 9999999999887764
No 229
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.84 E-value=9.8e-20 Score=156.31 Aligned_cols=150 Identities=19% Similarity=0.093 Sum_probs=107.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|++|||||||+++|++.... ....++.+.+.....+.+++ ..+.+|||||.+ ++......++
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~~ 74 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE---------SFRSITRSYY 74 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcH---------HHHHHHHHHh
Confidence 68999999999999999999986422 22233444555445566665 467899999986 5566667788
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
+++|++++|+|++++.+..+ ..+...++. .+.|+++|+||+|+...... ..+. ..+. .++++||+.+.|
T Consensus 75 ~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~ 153 (168)
T cd01866 75 RGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGL-IFMETSAKTASN 153 (168)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 99999999999886332222 222222332 36799999999999754433 2222 3344 789999999999
Q ss_pred HHHHHHHHHHhcC
Q psy17089 151 IKNFLENILTIEL 163 (419)
Q Consensus 151 v~~l~~~i~~~~~ 163 (419)
++++|..+.+.+.
T Consensus 154 i~~~~~~~~~~~~ 166 (168)
T cd01866 154 VEEAFINTAKEIY 166 (168)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987654
No 230
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.84 E-value=7.2e-20 Score=163.66 Aligned_cols=151 Identities=17% Similarity=0.130 Sum_probs=107.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|++|||||||+++|++.. +...+.++..+.....+.+++. .+.||||+|++ .+......++
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~~--F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e---------~~~~~~~~~~ 82 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKDC--YPETYVPTVFENYTAGLETEEQRVELSLWDTSGSP---------YYDNVRPLCY 82 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcCC--CCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCch---------hhHHHHHHHc
Confidence 589999999999999999999753 3344433322333334566664 56799999987 5555666789
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHh--cCCCEEEEEeccCCCCC------------Ccc-----hhHH-hcCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINS------------SIS-----LDFY-ELGIG 138 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~Dl~~~------------~~~-----~~~~-~~~~~ 138 (419)
+++|++++|+|.++..+... ..|.+.+++ .+.|+++|+||+|+... +.+ .++. ..+..
T Consensus 83 ~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~ 162 (232)
T cd04174 83 SDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAE 162 (232)
T ss_pred CCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCC
Confidence 99999999999987555432 234444543 36799999999998642 222 2333 34544
Q ss_pred CeEEEeeccCC-CHHHHHHHHHHhcCC
Q psy17089 139 NPHIISALYGN-GIKNFLENILTIELP 164 (419)
Q Consensus 139 ~~~~vSa~~~~-~v~~l~~~i~~~~~~ 164 (419)
.++++||++|. |++++|..++..+.+
T Consensus 163 ~~~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 163 VYLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred EEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence 58999999998 899999999876544
No 231
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=5.5e-20 Score=177.23 Aligned_cols=159 Identities=26% Similarity=0.323 Sum_probs=120.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEEC-CeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG-KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
..|+|+|.||||||||+|+|++.+.. ++++|++|+++..+.+.++ +..+.+|||||+.+... ....+...++..+.
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~k-Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~--~~~gLg~~fLrhie 235 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPK-IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGAS--EGVGLGHQFLRHIE 235 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCc-cccCCcceeceEEEEEEEeCCceEEEEECCCCccccc--ccchHHHHHHHHHh
Confidence 57999999999999999999987644 6789999999999988887 78999999999964321 11234455667788
Q ss_pred hCCEEEEEEeCCCC----CCHhHHHHHHHHHh-----cCCCEEEEEeccCCCCCCcc-hhHH-hcCCCCeEEEeeccCCC
Q psy17089 82 ESDIIIFIVDGRQG----LVEQDKLITNFLRK-----SGQPIVLVINKSENINSSIS-LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 82 ~~d~il~v~d~~~~----~~~~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~-~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.++++++|+|++.. .......+.++|.. .++|+++|+||+|+...... .++. .++ .+++++||+++.|
T Consensus 236 r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~-~~i~~iSA~tgeG 314 (424)
T PRK12297 236 RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG-PKVFPISALTGQG 314 (424)
T ss_pred hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC-CcEEEEeCCCCCC
Confidence 89999999998642 12222455566654 37899999999998543322 2333 233 3789999999999
Q ss_pred HHHHHHHHHHhcCCc
Q psy17089 151 IKNFLENILTIELPY 165 (419)
Q Consensus 151 v~~l~~~i~~~~~~~ 165 (419)
+++|++.|.+.+.+.
T Consensus 315 I~eL~~~L~~~l~~~ 329 (424)
T PRK12297 315 LDELLYAVAELLEET 329 (424)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999877654
No 232
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.84 E-value=1.5e-20 Score=164.60 Aligned_cols=156 Identities=15% Similarity=0.079 Sum_probs=101.0
Q ss_pred eeEEEEEeCCCCchhHHHH-HHhCCce---eeecCCCCcc--ceeeeEe--------eEEeC--eeEEEEeCCCCCCCCc
Q psy17089 182 YIKVAIVGKPNVGKSTLIN-SLLGENR---VITYDTPGTT--RDSIKSL--------FEYNN--KKYILIDTAGIRRRNK 245 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin-~l~~~~~---~~~~~~~~~t--~~~~~~~--------~~~~~--~~~~liDtpG~~~~~~ 245 (419)
.+||+++|.+|||||||+. ++.+... .....+.+|. .+..... ...++ ..+.+|||||+.+.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 3799999999999999996 5544311 0112222222 1211111 12344 46778999999321
Q ss_pred chHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHH--HHHHHHH--cCCcEEEEEEcccCCChh------------
Q psy17089 246 TFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDIN--IANFIYE--SGRSLIVCVNKWDSIIHN------------ 309 (419)
Q Consensus 246 ~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~--~~~~~~~--~~~~~iiv~NK~Dl~~~~------------ 309 (419)
.+ ..+++.||++++|+|++++.++++.. |+..+.. .+.|+++|+||+||....
T Consensus 80 ----------~~-~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~ 148 (195)
T cd01873 80 ----------DR-RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLA 148 (195)
T ss_pred ----------hh-cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccc
Confidence 11 14788999999999999998888763 5565554 468999999999986410
Q ss_pred -----hHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHHHHHHHHHHH
Q psy17089 310 -----QRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHV 351 (419)
Q Consensus 310 -----~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~ 351 (419)
......++.+ .++...+++++++||++|.||+++|+.+.+.
T Consensus 149 ~~~~~~~~V~~~e~~-~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 149 RPIKNADILPPETGR-AVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cccccCCccCHHHHH-HHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 0111111222 2222234699999999999999999998764
No 233
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.84 E-value=3.3e-20 Score=172.26 Aligned_cols=165 Identities=27% Similarity=0.410 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc---hhHH-hcCCCCeEEEee
Q psy17089 70 HEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFY-ELGIGNPHIISA 145 (419)
Q Consensus 70 ~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~---~~~~-~~~~~~~~~vSa 145 (419)
.+...+....+..+|++++|+|++.+....+..+.+.+. ++|+++|+||+|+...... .+++ ..+ ..++.+||
T Consensus 12 ~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~-~~vi~vSa 88 (287)
T PRK09563 12 AKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADPEVTKKWIEYFEEQG-IKALAINA 88 (287)
T ss_pred HHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCHHHHHHHHHHHHHcC-CeEEEEEC
Confidence 355667788899999999999999888877777777665 7999999999999654322 2223 223 26799999
Q ss_pred ccCCCHHHHHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEee
Q psy17089 146 LYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLF 225 (419)
Q Consensus 146 ~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~ 225 (419)
+++.|++++++.+.+.+++..... .........++++++|.||||||||+|+|.+...+.+++.||+|+.....
T Consensus 89 ~~~~gi~~L~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~-- 162 (287)
T PRK09563 89 KKGQGVKKILKAAKKLLKEKNERR----KAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWI-- 162 (287)
T ss_pred CCcccHHHHHHHHHHHHHHHHhhh----hhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEE--
Confidence 999999999999988765432100 00111235689999999999999999999998888899999999986432
Q ss_pred EEeCeeEEEEeCCCCCCCC
Q psy17089 226 EYNNKKYILIDTAGIRRRN 244 (419)
Q Consensus 226 ~~~~~~~~liDtpG~~~~~ 244 (419)
.. +..+.++||||+....
T Consensus 163 ~~-~~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 163 KL-GKGLELLDTPGILWPK 180 (287)
T ss_pred Ee-CCcEEEEECCCcCCCC
Confidence 22 4579999999997654
No 234
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.84 E-value=7.5e-20 Score=158.73 Aligned_cols=148 Identities=18% Similarity=0.248 Sum_probs=107.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.||+++|.+|||||||+++|.... +....|++.. ....+...+..+.+|||||+. ++......++++
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~--~~~~~pt~g~--~~~~~~~~~~~~~i~D~~Gq~---------~~~~~~~~~~~~ 84 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGF--NVETVEYKNISFTVWDVGGQD---------KIRPLWRHYFQN 84 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCC--CccccCCcce--eEEEEEECCEEEEEEECCCCH---------HHHHHHHHHhcc
Confidence 589999999999999999998543 2333333333 334567778899999999986 566677778999
Q ss_pred CCEEEEEEeCCCCCCH--hHHHHHHHHHh---cCCCEEEEEeccCCCCCCcchhHH-hcCCC-------CeEEEeeccCC
Q psy17089 83 SDIIIFIVDGRQGLVE--QDKLITNFLRK---SGQPIVLVINKSENINSSISLDFY-ELGIG-------NPHIISALYGN 149 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~--~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~~~~-~~~~~-------~~~~vSa~~~~ 149 (419)
+|+++||+|+++..+. ...++.+++.. .+.|+++|+||+|+.......++. .+++. .++++||++|+
T Consensus 85 a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~ 164 (181)
T PLN00223 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
T ss_pred CCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCC
Confidence 9999999998864322 22333333332 368999999999997665443322 23332 24579999999
Q ss_pred CHHHHHHHHHHhcC
Q psy17089 150 GIKNFLENILTIEL 163 (419)
Q Consensus 150 ~v~~l~~~i~~~~~ 163 (419)
|+++++++|.+.+.
T Consensus 165 gv~e~~~~l~~~~~ 178 (181)
T PLN00223 165 GLYEGLDWLSNNIA 178 (181)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999987654
No 235
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.84 E-value=5e-20 Score=181.03 Aligned_cols=155 Identities=25% Similarity=0.318 Sum_probs=116.5
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeee------------------------------cCCCCccceeeeEeeEEeCe
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVIT------------------------------YDTPGTTRDSIKSLFEYNNK 230 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~ 230 (419)
+.++|+++|++|+|||||+++|+....... ...+|+|++.....++.++.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 568999999999999999999984322211 12579999999999988899
Q ss_pred eEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCC--CCCHHHHHHHHHHHHcCC-cEEEEEEcccCCC
Q psy17089 231 KYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQ--NISAQDINIANFIYESGR-SLIVCVNKWDSII 307 (419)
Q Consensus 231 ~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~--~~~~~~~~~~~~~~~~~~-~~iiv~NK~Dl~~ 307 (419)
.+.+|||||+.++. ..+...+..+|++++|+|+++ +...+..+++..+...+. |+++|+||+|+.+
T Consensus 85 ~i~liDtpG~~~~~-----------~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 85 YFTIVDCPGHRDFV-----------KNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVN 153 (425)
T ss_pred EEEEEECCCcccch-----------hhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccccc
Confidence 99999999984432 223345678999999999998 666677777777777775 6899999999975
Q ss_pred h--hhHHHHHHHHHHHcCCCC----CCcEEEEeccCCCCHHHHHH
Q psy17089 308 H--NQRKIIKNNIKKKLNFLS----FAMFNFISAIKLNNINSFME 346 (419)
Q Consensus 308 ~--~~~~~~~~~~~~~~~~~~----~~~~~~~SA~~g~gv~~l~~ 346 (419)
. .......+++.+.+...+ ..+++++||++|.|++++++
T Consensus 154 ~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 154 YDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 2 222334445554443332 36899999999999998763
No 236
>KOG0394|consensus
Probab=99.84 E-value=1.4e-20 Score=154.21 Aligned_cols=153 Identities=19% Similarity=0.185 Sum_probs=120.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEE--EEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSF--IIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
-||+++|++|||||||+|+++..+ +......++..|+....+.++++.+ +||||+|++ +|+.+....+
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~k-F~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQE---------RFqsLg~aFY 79 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKK-FSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQE---------RFQSLGVAFY 79 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH-HHHHhccccchhheeeEEEEcCeEEEEEEEecccHH---------Hhhhccccee
Confidence 489999999999999999999764 3233445677788888899988754 499999998 8888888899
Q ss_pred HhCCEEEEEEeCCCC--CCHhHHHHHHHHHhc------CCCEEEEEeccCCCCCC--cc----hhHH--hcCCCCeEEEe
Q psy17089 81 IESDIIIFIVDGRQG--LVEQDKLITNFLRKS------GQPIVLVINKSENINSS--IS----LDFY--ELGIGNPHIIS 144 (419)
Q Consensus 81 ~~~d~il~v~d~~~~--~~~~~~~~~~~l~~~------~~p~ilv~NK~Dl~~~~--~~----~~~~--~~~~~~~~~vS 144 (419)
+++|++++|+|.... +...+.|--+++... .-|+|+++||+|+.... .+ ..-| ..|.-++|++|
T Consensus 80 RgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtS 159 (210)
T KOG0394|consen 80 RGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETS 159 (210)
T ss_pred cCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEec
Confidence 999999999986643 455556667777653 34999999999997632 22 2222 55666999999
Q ss_pred eccCCCHHHHHHHHHHhcCCc
Q psy17089 145 ALYGNGIKNFLENILTIELPY 165 (419)
Q Consensus 145 a~~~~~v~~l~~~i~~~~~~~ 165 (419)
||...|+++.|..+.+.....
T Consensus 160 AK~~~NV~~AFe~ia~~aL~~ 180 (210)
T KOG0394|consen 160 AKEATNVDEAFEEIARRALAN 180 (210)
T ss_pred ccccccHHHHHHHHHHHHHhc
Confidence 999999999999988765544
No 237
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.84 E-value=7.9e-20 Score=155.34 Aligned_cols=144 Identities=19% Similarity=0.253 Sum_probs=101.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhC
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 83 (419)
||+++|.+|||||||+++|.... +....|++..+ ...+......+.+|||||+. ++......+++++
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~--~~~~~pt~g~~--~~~~~~~~~~~~l~D~~G~~---------~~~~~~~~~~~~a 68 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFN--VETVEYKNISFTVWDVGGQD---------KIRPLWRHYFQNT 68 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CcccCCCCCcc--eEEEEECCEEEEEEECCCCH---------hHHHHHHHHhcCC
Confidence 79999999999999999997543 23333333332 34456677889999999997 5556667789999
Q ss_pred CEEEEEEeCCCCC--CHhHHHHHHHHHh---cCCCEEEEEeccCCCCCCcchh---HHhcC-----CCCeEEEeeccCCC
Q psy17089 84 DIIIFIVDGRQGL--VEQDKLITNFLRK---SGQPIVLVINKSENINSSISLD---FYELG-----IGNPHIISALYGNG 150 (419)
Q Consensus 84 d~il~v~d~~~~~--~~~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~~---~~~~~-----~~~~~~vSa~~~~~ 150 (419)
|+++||+|+++.. .....++.+.++. ...|+++|+||+|+.......+ .+... ...++++||++|.|
T Consensus 69 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~g 148 (159)
T cd04150 69 QGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDG 148 (159)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCC
Confidence 9999999987642 2223444444432 2589999999999975533212 11111 11356899999999
Q ss_pred HHHHHHHHHH
Q psy17089 151 IKNFLENILT 160 (419)
Q Consensus 151 v~~l~~~i~~ 160 (419)
++++|++|.+
T Consensus 149 v~~~~~~l~~ 158 (159)
T cd04150 149 LYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 238
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.84 E-value=4.7e-20 Score=158.78 Aligned_cols=149 Identities=17% Similarity=0.186 Sum_probs=107.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|.+|||||||+.+++... +...+.++..+.....+.+++. .+.+|||+|++ ++......++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~--f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~---------~~~~~~~~~~ 70 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQE---------DYNRLRPLSY 70 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC--CCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCc---------cccccchhhc
Confidence 389999999999999999999753 3444433333444445666664 56799999997 4445556688
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHh--cCCCEEEEEeccCCCCCC----------cc-----hhHH-hcCCCCe
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINSS----------IS-----LDFY-ELGIGNP 140 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~Dl~~~~----------~~-----~~~~-~~~~~~~ 140 (419)
+++|++++|+|.++..+... ..|...++. .+.|+++|+||+|+.+.. .+ ..+. ..+...+
T Consensus 71 ~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~ 150 (176)
T cd04133 71 RGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAY 150 (176)
T ss_pred CCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEE
Confidence 99999999999887655444 234444443 468999999999996542 12 2222 3344358
Q ss_pred EEEeeccCCCHHHHHHHHHHhc
Q psy17089 141 HIISALYGNGIKNFLENILTIE 162 (419)
Q Consensus 141 ~~vSa~~~~~v~~l~~~i~~~~ 162 (419)
+++||++|.|++++|..+.+.+
T Consensus 151 ~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 151 IECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred EECCCCcccCHHHHHHHHHHHH
Confidence 9999999999999999999865
No 239
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.84 E-value=4.3e-20 Score=153.45 Aligned_cols=131 Identities=29% Similarity=0.463 Sum_probs=104.6
Q ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhc--CCCEEEEEeccCCCCCCcc---hhHH-hcCCCCeEEEeecc
Q psy17089 74 KQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKS--GQPIVLVINKSENINSSIS---LDFY-ELGIGNPHIISALY 147 (419)
Q Consensus 74 ~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~--~~p~ilv~NK~Dl~~~~~~---~~~~-~~~~~~~~~vSa~~ 147 (419)
..+...+..+|++++|+|++++....+..+.+++... ++|+++|+||+|+...... .+++ ..+ ..++++||++
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~-~~ii~iSa~~ 81 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEG-IVVVFFSALK 81 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcC-CeEEEEEecC
Confidence 3566789999999999999988888888888888876 8999999999999754443 2323 334 3788999986
Q ss_pred CCCHHHHHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEE
Q psy17089 148 GNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY 227 (419)
Q Consensus 148 ~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~ 227 (419)
+.+ +++++|.+|+|||||+|+|++.....++..+|+|.+... +..
T Consensus 82 ~~~---------------------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~--~~~ 126 (141)
T cd01857 82 ENA---------------------------------TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQT--IFL 126 (141)
T ss_pred CCc---------------------------------EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEE--EEe
Confidence 532 699999999999999999999887778888998887544 333
Q ss_pred eCeeEEEEeCCCCC
Q psy17089 228 NNKKYILIDTAGIR 241 (419)
Q Consensus 228 ~~~~~~liDtpG~~ 241 (419)
+ ..+.+|||||+.
T Consensus 127 ~-~~~~i~DtpG~~ 139 (141)
T cd01857 127 T-PTITLCDCPGLV 139 (141)
T ss_pred C-CCEEEEECCCcC
Confidence 3 378999999983
No 240
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.84 E-value=6.2e-20 Score=158.46 Aligned_cols=148 Identities=18% Similarity=0.183 Sum_probs=105.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|.+|||||||+++|.... +...+.++..+.....+.+++ ..+.+|||||++ ++......++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~--f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 70 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE---------DYDRLRPLSY 70 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCCCCCCceeeeeEEEEEECCEEEEEEEEECCCcc---------chhhhhhhhc
Confidence 489999999999999999999753 334444444443344566777 456799999997 4444455678
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHh--cCCCEEEEEeccCCCCCCc------------c-----hhHH-hcCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINSSI------------S-----LDFY-ELGIG 138 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~------------~-----~~~~-~~~~~ 138 (419)
+++|++++|+|.+++.+... ..|...++. .+.|+++|+||+|+..... + ..+. ..+..
T Consensus 71 ~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~ 150 (175)
T cd01874 71 PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAV 150 (175)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCc
Confidence 89999999999887544433 234444543 3689999999999865421 1 1122 23334
Q ss_pred CeEEEeeccCCCHHHHHHHHHHh
Q psy17089 139 NPHIISALYGNGIKNFLENILTI 161 (419)
Q Consensus 139 ~~~~vSa~~~~~v~~l~~~i~~~ 161 (419)
.++++||++|.|++++|+.+..+
T Consensus 151 ~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 151 KYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred EEEEecCCCCCCHHHHHHHHHHH
Confidence 78999999999999999998864
No 241
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.84 E-value=7.8e-20 Score=156.55 Aligned_cols=152 Identities=20% Similarity=0.133 Sum_probs=103.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecC-CCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVAN-YPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
+||+++|++|||||||+++++... +... .++...+.....+..++ ..+.+|||||++. +.......
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------~~~~~~~~ 69 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGE--FEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK---------FGGLRDGY 69 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChh---------hccccHHH
Confidence 489999999999999999998643 1222 22222333333333333 5678999999872 22333456
Q ss_pred HHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh-c-CCCEEEEEeccCCCCCCcc---hhHHhcCCCCeEEEeeccCCCHHH
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK-S-GQPIVLVINKSENINSSIS---LDFYELGIGNPHIISALYGNGIKN 153 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~-~-~~p~ilv~NK~Dl~~~~~~---~~~~~~~~~~~~~vSa~~~~~v~~ 153 (419)
+..+|++++|+|..++.+... ..+.+.+.+ . +.|+++|+||+|+...... .++......+++++||++|.|+++
T Consensus 70 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 149 (166)
T cd00877 70 YIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEK 149 (166)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHH
Confidence 789999999999886433322 223333332 2 6899999999999744432 223333334789999999999999
Q ss_pred HHHHHHHhcCCc
Q psy17089 154 FLENILTIELPY 165 (419)
Q Consensus 154 l~~~i~~~~~~~ 165 (419)
+|++|.+.+.+.
T Consensus 150 ~f~~l~~~~~~~ 161 (166)
T cd00877 150 PFLWLARKLLGN 161 (166)
T ss_pred HHHHHHHHHHhc
Confidence 999999877654
No 242
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.84 E-value=3.5e-20 Score=162.02 Aligned_cols=152 Identities=28% Similarity=0.432 Sum_probs=123.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCce-----------------ecCCCCCCccceEEEEE--ECCeEEEEEEcCCCCCc
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDAL-----------------VANYPGLTRDRHYGEGY--IGKKSFIIIDTGGFEPE 63 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~-----------------~~~~~~~t~~~~~~~~~--~~~~~~~liDtpG~~~~ 63 (419)
++|+++|+.++|||||+++|++..... .....+.|.+.....+. ..++.+.++||||+.
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~-- 81 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE-- 81 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH--
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc--
Confidence 589999999999999999998643211 11224678888888888 899999999999997
Q ss_pred chhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc---h----hHH-hc
Q psy17089 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---L----DFY-EL 135 (419)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~---~----~~~-~~ 135 (419)
.+.......+..+|++++|+|+.++......+.+..++..++|+++|+||+|+...+.. . .+. ..
T Consensus 82 -------~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~ 154 (188)
T PF00009_consen 82 -------DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEY 154 (188)
T ss_dssp -------HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHT
T ss_pred -------ceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhcccc
Confidence 67777888899999999999999999999999999999999999999999999832221 1 221 22
Q ss_pred CC-----CCeEEEeeccCCCHHHHHHHHHHhcC
Q psy17089 136 GI-----GNPHIISALYGNGIKNFLENILTIEL 163 (419)
Q Consensus 136 ~~-----~~~~~vSa~~~~~v~~l~~~i~~~~~ 163 (419)
+. .+++++||++|.|+++|++.+.+.+|
T Consensus 155 ~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 155 GENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 22 25899999999999999999999887
No 243
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.84 E-value=8.1e-20 Score=158.27 Aligned_cols=149 Identities=17% Similarity=0.173 Sum_probs=107.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
..||+++|++|||||||+++|+... +...+.++..+.....+.+++. .+.+|||+|++ ++......+
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~--f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e---------~~~~~~~~~ 73 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDC--FPENYVPTVFENYTASFEIDTQRIELSLWDTSGSP---------YYDNVRPLS 73 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC--CCCccCCceeeeeEEEEEECCEEEEEEEEECCCch---------hhHhhhhhh
Confidence 3689999999999999999999753 3344433333333445666665 56799999997 555556678
Q ss_pred HHhCCEEEEEEeCCCCCCHhH--HHHHHHHHh--cCCCEEEEEeccCCCCC------------Ccc-----hhHH-hcCC
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINS------------SIS-----LDFY-ELGI 137 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~Dl~~~------------~~~-----~~~~-~~~~ 137 (419)
++++|++++|+|.+++.+... ..|.+.+++ .+.|+++|+||+|+... +.+ .++. ..+.
T Consensus 74 ~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 153 (182)
T cd04172 74 YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGA 153 (182)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCC
Confidence 899999999999887544433 234444444 36799999999998641 122 2233 3443
Q ss_pred CCeEEEeeccCCC-HHHHHHHHHHh
Q psy17089 138 GNPHIISALYGNG-IKNFLENILTI 161 (419)
Q Consensus 138 ~~~~~vSa~~~~~-v~~l~~~i~~~ 161 (419)
..++++||++|.| ++++|..+.+.
T Consensus 154 ~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 154 ATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred CEEEECCcCCCCCCHHHHHHHHHHH
Confidence 4789999999998 99999998764
No 244
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.84 E-value=7.4e-20 Score=157.87 Aligned_cols=145 Identities=19% Similarity=0.251 Sum_probs=104.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
++|+++|++|||||||+++|.+... ....+ |.......+.+++..+.+|||||++ .+......++.+
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~~~--~~~~~--t~g~~~~~~~~~~~~l~l~D~~G~~---------~~~~~~~~~~~~ 81 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGEDI--DTISP--TLGFQIKTLEYEGYKLNIWDVGGQK---------TLRPYWRNYFES 81 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCC--CCcCC--ccccceEEEEECCEEEEEEECCCCH---------HHHHHHHHHhCC
Confidence 5899999999999999999998632 12222 2223445566778899999999997 444556667899
Q ss_pred CCEEEEEEeCCCCCC--HhHHHHHHHHHh---cCCCEEEEEeccCCCCCCcc---hhHHhc-----CCCCeEEEeeccCC
Q psy17089 83 SDIIIFIVDGRQGLV--EQDKLITNFLRK---SGQPIVLVINKSENINSSIS---LDFYEL-----GIGNPHIISALYGN 149 (419)
Q Consensus 83 ~d~il~v~d~~~~~~--~~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~---~~~~~~-----~~~~~~~vSa~~~~ 149 (419)
+|++++|+|+.++.+ ....++..+++. .+.|+++|+||+|+...... .++... ...+++++||++|.
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 161 (173)
T cd04154 82 TDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGE 161 (173)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCc
Confidence 999999999887522 222444444432 57899999999999765432 222211 12268999999999
Q ss_pred CHHHHHHHHHH
Q psy17089 150 GIKNFLENILT 160 (419)
Q Consensus 150 ~v~~l~~~i~~ 160 (419)
|++++++++.+
T Consensus 162 gi~~l~~~l~~ 172 (173)
T cd04154 162 GLLQGIDWLVD 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999863
No 245
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.84 E-value=7.8e-20 Score=158.05 Aligned_cols=149 Identities=15% Similarity=0.133 Sum_probs=105.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
+.||+++|++|||||||+++|.+.. +...+.++..+.....+.+++. .+.+|||||++ .+......+
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~--f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~---------~~~~~~~~~ 69 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDC--YPETYVPTVFENYTASFEIDEQRIELSLWDTSGSP---------YYDNVRPLC 69 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCc--CCCCcCCceEEEEEEEEEECCEEEEEEEEECCCch---------hhhhcchhh
Confidence 3589999999999999999999753 3344433333333345666664 56699999987 444455567
Q ss_pred HHhCCEEEEEEeCCCCCCHhH--HHHHHHHHh--cCCCEEEEEeccCCCCC------------Ccc-----hhHH-hcCC
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINS------------SIS-----LDFY-ELGI 137 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~Dl~~~------------~~~-----~~~~-~~~~ 137 (419)
++++|++++|+|.+++.+... ..|...+++ .+.|+++|+||+|+... +.+ .++. ..+.
T Consensus 70 ~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~ 149 (178)
T cd04131 70 YPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGA 149 (178)
T ss_pred cCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCC
Confidence 899999999999887554443 234444443 36799999999998541 112 2233 3444
Q ss_pred CCeEEEeeccCCC-HHHHHHHHHHh
Q psy17089 138 GNPHIISALYGNG-IKNFLENILTI 161 (419)
Q Consensus 138 ~~~~~vSa~~~~~-v~~l~~~i~~~ 161 (419)
..++++||++|+| ++++|..+.+.
T Consensus 150 ~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 150 EIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred CEEEECccCcCCcCHHHHHHHHHHH
Confidence 4689999999995 99999998874
No 246
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.84 E-value=7.8e-20 Score=154.73 Aligned_cols=152 Identities=21% Similarity=0.189 Sum_probs=104.7
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEe--CeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN--NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|+|||||++++.+...... ..++.+.+.....+..+ ...+.+||+||+ +.+. .....
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~-~~~~~ 68 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQ----------ERFR-SITPS 68 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCCh----------HHHH-HHHHH
Confidence 4899999999999999999998754332 33344444444444443 357888999998 3333 23446
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHHHc---CCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEecc
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIYES---GRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAI 336 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~~---~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 336 (419)
+++.+|++++|+|++++.+.+.. .++..+... +.|+++|+||+|+...... ..+++.+.... ...+++++||+
T Consensus 69 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~-~~~~~~~~sa~ 145 (159)
T cd00154 69 YYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQV--STEEAQQFAKE-NGLLFFETSAK 145 (159)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccc--cHHHHHHHHHH-cCCeEEEEecC
Confidence 78899999999999986544443 355555553 4999999999999622211 11112222222 34789999999
Q ss_pred CCCCHHHHHHHHH
Q psy17089 337 KLNNINSFMESIN 349 (419)
Q Consensus 337 ~g~gv~~l~~~i~ 349 (419)
+|.|+++++++|.
T Consensus 146 ~~~~i~~~~~~i~ 158 (159)
T cd00154 146 TGENVEELFQSLA 158 (159)
T ss_pred CCCCHHHHHHHHh
Confidence 9999999999875
No 247
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.84 E-value=6e-20 Score=157.41 Aligned_cols=148 Identities=21% Similarity=0.315 Sum_probs=104.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCc---eecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDA---LVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
+|+++|++|||||||+|+|.+.... ........|.......+.+++..+.+|||||+. .+......++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~~ 71 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQE---------SLRSLWDKYY 71 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCCh---------hhHHHHHHHh
Confidence 5899999999999999999864321 111222345555566778889999999999997 4555666778
Q ss_pred HhCCEEEEEEeCCCCCCH--hHHHHHHHHHh---cCCCEEEEEeccCCCCCCcc---hhHHh-----cC--CCCeEEEee
Q psy17089 81 IESDIIIFIVDGRQGLVE--QDKLITNFLRK---SGQPIVLVINKSENINSSIS---LDFYE-----LG--IGNPHIISA 145 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~--~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~---~~~~~-----~~--~~~~~~vSa 145 (419)
..+|++++|+|+.+.... ...++..+++. .+.|+++|+||+|+...... .++.. .+ ..+++++||
T Consensus 72 ~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 151 (167)
T cd04160 72 AECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSA 151 (167)
T ss_pred CCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeC
Confidence 999999999998764221 11233333332 47899999999998765432 22221 11 126899999
Q ss_pred ccCCCHHHHHHHHHH
Q psy17089 146 LYGNGIKNFLENILT 160 (419)
Q Consensus 146 ~~~~~v~~l~~~i~~ 160 (419)
++|.|+++++++|.+
T Consensus 152 ~~g~gv~e~~~~l~~ 166 (167)
T cd04160 152 LEGTGVREGIEWLVE 166 (167)
T ss_pred CCCcCHHHHHHHHhc
Confidence 999999999999864
No 248
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.84 E-value=2e-19 Score=158.40 Aligned_cols=160 Identities=24% Similarity=0.376 Sum_probs=115.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC-CceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcc-hhhHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV-KKGIMHEMTKQTKQA 79 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~-~~~~~~~~~~~~~~~ 79 (419)
.++|+++|++|||||||+|+|++.. ....+..+++|++..... + +..+.+|||||+.... .+...+++......+
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 100 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEY 100 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHH
Confidence 3789999999999999999999864 344556667777655433 2 4689999999975321 112223344444444
Q ss_pred HH---hCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc-------hhHHhcCCCCeEEEeeccCC
Q psy17089 80 II---ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-------LDFYELGIGNPHIISALYGN 149 (419)
Q Consensus 80 ~~---~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~-------~~~~~~~~~~~~~vSa~~~~ 149 (419)
+. .++++++|+|+..+....+.++.+++...++|+++++||+|+...... .+........++++||+++.
T Consensus 101 ~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~ 180 (196)
T PRK00454 101 LRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQ 180 (196)
T ss_pred HHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCC
Confidence 44 446888999988877777777788888889999999999999765432 11222213478999999999
Q ss_pred CHHHHHHHHHHhcCC
Q psy17089 150 GIKNFLENILTIELP 164 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~ 164 (419)
|++++++.|.+.+.+
T Consensus 181 gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 181 GIDELRAAIAKWLAE 195 (196)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999887654
No 249
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.84 E-value=1.2e-19 Score=154.63 Aligned_cols=147 Identities=17% Similarity=0.187 Sum_probs=104.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEEC----CeEEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG----KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~----~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
||+++|++|+|||||+++|++.. +.....++.+.+.....+.+. +..+.+|||||++ ++......+
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~ 71 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGI-FTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE---------EFDAITKAY 71 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH---------HHHHhHHHH
Confidence 79999999999999999999753 212223344444444445554 3578899999986 555566778
Q ss_pred HHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh--cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK--SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
++++|++++|+|..+..+... ..+...+.. .+.|+++|+||+|+...... ..+. ..+. +++++||++|.|
T Consensus 72 ~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 150 (162)
T cd04106 72 YRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQL-PLFRTSVKDDFN 150 (162)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCC-eEEEEECCCCCC
Confidence 899999999999876432222 222222322 47899999999999765443 2223 3455 789999999999
Q ss_pred HHHHHHHHHHh
Q psy17089 151 IKNFLENILTI 161 (419)
Q Consensus 151 v~~l~~~i~~~ 161 (419)
++++++.|...
T Consensus 151 v~~l~~~l~~~ 161 (162)
T cd04106 151 VTELFEYLAEK 161 (162)
T ss_pred HHHHHHHHHHh
Confidence 99999998753
No 250
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.84 E-value=2.5e-19 Score=162.48 Aligned_cols=149 Identities=16% Similarity=0.209 Sum_probs=106.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|.+|||||||+++|++.. +...+.+++.+.....+.+++. .+.||||+|.. .+......++
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~--f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~---------~~~~~~~~~~ 69 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGR--FEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNH---------PFPAMRRLSI 69 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCChhHhEEEEEEECCEEEEEEEEECCCCh---------hhhHHHHHHh
Confidence 379999999999999999998753 3345555555666667777774 56699999987 3333444567
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh------------cCCCEEEEEeccCCCCCCcc--h---hHHhcC-CCCeE
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK------------SGQPIVLVINKSENINSSIS--L---DFYELG-IGNPH 141 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~------------~~~p~ilv~NK~Dl~~~~~~--~---~~~~~~-~~~~~ 141 (419)
.++|++++|+|..+..+... ..+.+.+.. .+.|+++|+||+|+...+.. . ++.... ...++
T Consensus 70 ~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~ 149 (247)
T cd04143 70 LTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYF 149 (247)
T ss_pred ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEE
Confidence 89999999999886433222 223333321 36799999999999764433 2 222211 23689
Q ss_pred EEeeccCCCHHHHHHHHHHhc
Q psy17089 142 IISALYGNGIKNFLENILTIE 162 (419)
Q Consensus 142 ~vSa~~~~~v~~l~~~i~~~~ 162 (419)
++||++|.|++++|+.|....
T Consensus 150 evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 150 EVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred EEeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999999754
No 251
>PLN03108 Rab family protein; Provisional
Probab=99.84 E-value=1.1e-19 Score=161.67 Aligned_cols=158 Identities=18% Similarity=0.129 Sum_probs=109.9
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
..+||+++|++|||||||+++|++... .....+++..+.....+.+++. .+.+|||||+ +.+.. ..
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~-~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~----------~~~~~-~~ 72 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ----------ESFRS-IT 72 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCccceEEEEEEEECCEEEEEEEEeCCCc----------HHHHH-HH
Confidence 348999999999999999999997643 2223344444444445555554 5678999998 33332 23
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEEE
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 333 (419)
..+++.+|++++|+|+++..+++.. .|+..+.. .+.|+++|+||+|+...... .+..+.+.+. .+++++++
T Consensus 73 ~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~e~ 148 (210)
T PLN03108 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE----HGLIFMEA 148 (210)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHH----cCCEEEEE
Confidence 3677899999999999988766665 34444433 46899999999999653221 1111122222 23689999
Q ss_pred eccCCCCHHHHHHHHHHHHhh
Q psy17089 334 SAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~ 354 (419)
||++|.|++++|.++.+.+..
T Consensus 149 Sa~~~~~v~e~f~~l~~~~~~ 169 (210)
T PLN03108 149 SAKTAQNVEEAFIKTAAKIYK 169 (210)
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999877643
No 252
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.84 E-value=2.2e-19 Score=153.34 Aligned_cols=151 Identities=22% Similarity=0.162 Sum_probs=109.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|++|+|||||+++|++... .....++.+.+.....+.+++ ..+.+|||||.. .+.......+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~---------~~~~~~~~~~ 70 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE---------RFRSITSSYY 70 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH---------HHHHHHHHHh
Confidence 3899999999999999999997642 223334455555556677777 467799999986 5555667778
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.++|++++|+|..+..+... ..++..+.. .+.|+++|+||+|+...... ..+. ..+. +++++||+++.|
T Consensus 71 ~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~ 149 (164)
T smart00175 71 RGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGL-PFFETSAKTNTN 149 (164)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 89999999999986433322 122233222 36899999999998764432 2222 3454 689999999999
Q ss_pred HHHHHHHHHHhcCC
Q psy17089 151 IKNFLENILTIELP 164 (419)
Q Consensus 151 v~~l~~~i~~~~~~ 164 (419)
++++++.|.+.+.+
T Consensus 150 i~~l~~~i~~~~~~ 163 (164)
T smart00175 150 VEEAFEELAREILK 163 (164)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987643
No 253
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.84 E-value=7.8e-20 Score=156.99 Aligned_cols=150 Identities=15% Similarity=0.161 Sum_probs=105.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCcee-cCCCCC-CccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALV-ANYPGL-TRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQ 78 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~-~~~~~~-t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 78 (419)
+||+++|++|||||||+++|++.. +. ..+.++ ..+.....+.++| ..+.+|||+|.+ .+......
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~--f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~---------~~~~~~~~ 73 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRS--FSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDE---------VAILLNDA 73 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCC--CCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcc---------cccccchh
Confidence 589999999999999999999864 33 444443 3344445566777 457799999987 33334455
Q ss_pred HHHhCCEEEEEEeCCCCCCHhH-HHHHHHHH-hcCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 79 AIIESDIIIFIVDGRQGLVEQD-KLITNFLR-KSGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 79 ~~~~~d~il~v~d~~~~~~~~~-~~~~~~l~-~~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
++.++|++++|+|+.++.+... ..+.+.+. ..+.|+++|+||+|+...... .++. .++...++++||++|.|
T Consensus 74 ~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (169)
T cd01892 74 ELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDS 153 (169)
T ss_pred hhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCcc
Confidence 6799999999999876422221 12223232 136899999999999654421 2333 34554579999999999
Q ss_pred HHHHHHHHHHhcC
Q psy17089 151 IKNFLENILTIEL 163 (419)
Q Consensus 151 v~~l~~~i~~~~~ 163 (419)
++++|+.+.+.+.
T Consensus 154 v~~lf~~l~~~~~ 166 (169)
T cd01892 154 SNELFTKLATAAQ 166 (169)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988654
No 254
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.84 E-value=1e-19 Score=154.96 Aligned_cols=154 Identities=21% Similarity=0.180 Sum_probs=104.3
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|+|||||+++|.+..... ...+.++.......+...+. .+.+|||||+ +.+..... .
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~-~ 68 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQ----------ERYHALGP-I 68 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCch----------HHHHHhhH-H
Confidence 489999999999999999999775322 22333334433444444443 6778999998 33332222 4
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 261 SILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
+++.+|++++|+|++++.+.++.. ++..+.. .++|+++|+||+|+...... ......+... .+.+++++||
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~s~ 144 (162)
T cd04123 69 YYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKS----VGAKHFETSA 144 (162)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHH----cCCEEEEEeC
Confidence 678899999999999876655543 3333333 36899999999999743221 1111112221 2467899999
Q ss_pred cCCCCHHHHHHHHHHHH
Q psy17089 336 IKLNNINSFMESINHVY 352 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~~ 352 (419)
++|.|++++++++.+.+
T Consensus 145 ~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 145 KTGKGIEELFLSLAKRM 161 (162)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999987653
No 255
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.84 E-value=1.2e-19 Score=155.65 Aligned_cols=152 Identities=22% Similarity=0.231 Sum_probs=104.8
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHh
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~ 263 (419)
+|+++|.+|||||||+++|.+.......+..| .....+..++..+.+|||||+ +++... ...+++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g----~~~~~~~~~~~~~~i~D~~G~----------~~~~~~-~~~~~~ 65 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVG----FTPTKLRLDKYEVCIFDLGGG----------ANFRGI-WVNYYA 65 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCccc----ceEEEEEECCEEEEEEECCCc----------HHHHHH-HHHHHc
Confidence 48999999999999999999762212222222 223456667789999999998 333222 236889
Q ss_pred hcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHH-HHcC-CC-CCCcEEEEec
Q psy17089 264 EANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIK-KKLN-FL-SFAMFNFISA 335 (419)
Q Consensus 264 ~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~-~~~~-~~-~~~~~~~~SA 335 (419)
.+|++++|+|+++..+..+. .++..+.. .++|+++|+||+|+.......++.+.+. +.+. .. ..++++++||
T Consensus 66 ~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa 145 (167)
T cd04161 66 EAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSA 145 (167)
T ss_pred CCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEc
Confidence 99999999999987655553 34444432 4789999999999976543333333321 1121 11 2357888999
Q ss_pred cCC------CCHHHHHHHHHH
Q psy17089 336 IKL------NNINSFMESINH 350 (419)
Q Consensus 336 ~~g------~gv~~l~~~i~~ 350 (419)
++| .|+.+.|++|.+
T Consensus 146 ~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 146 IEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred eeCCCCccccCHHHHHHHHhc
Confidence 998 899999999864
No 256
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.84 E-value=2.8e-20 Score=160.74 Aligned_cols=152 Identities=26% Similarity=0.325 Sum_probs=110.6
Q ss_pred EEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEEC-CeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCE
Q psy17089 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG-KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDI 85 (419)
Q Consensus 7 ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ 85 (419)
++|++|||||||+|+|.+... .++.++++|.++....+.+. +..+.+|||||+.+.... .+.+...+...+.++|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--~~~~~~~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASE--GRGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhc--CCCccHHHHHHHhccCE
Confidence 589999999999999998754 46677888998888888888 899999999998632100 01222344556788999
Q ss_pred EEEEEeCCCCC-----CH--hHHHHHHHHHh----------cCCCEEEEEeccCCCCCCcchh-----HHhcCCCCeEEE
Q psy17089 86 IIFIVDGRQGL-----VE--QDKLITNFLRK----------SGQPIVLVINKSENINSSISLD-----FYELGIGNPHII 143 (419)
Q Consensus 86 il~v~d~~~~~-----~~--~~~~~~~~l~~----------~~~p~ilv~NK~Dl~~~~~~~~-----~~~~~~~~~~~v 143 (419)
+++|+|+.+.. .. ....+...+.. .++|+++|+||+|+.......+ ........++++
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPI 157 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEE
Confidence 99999998752 11 11223333321 3789999999999987665522 122234578999
Q ss_pred eeccCCCHHHHHHHHHHh
Q psy17089 144 SALYGNGIKNFLENILTI 161 (419)
Q Consensus 144 Sa~~~~~v~~l~~~i~~~ 161 (419)
||+++.|++++++.+...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998753
No 257
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.84 E-value=1.8e-19 Score=158.98 Aligned_cols=153 Identities=21% Similarity=0.195 Sum_probs=109.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
..||+++|++|||||||+++|.+... .....++.+.+.....+.+++. .+.+|||||++ .+......+
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~---------~~~~~~~~~ 75 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTF-SGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE---------RFRTITSTY 75 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCccccceeEEEEEEECCEEEEEEEEeCCCch---------hHHHHHHHH
Confidence 36899999999999999999997541 1222344444555556666664 67799999987 555666778
Q ss_pred HHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh--cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK--SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
+.+++++++|+|+.++.+... ..+++.+.. ...|+++|+||+|+...... ..+. ..+. .++++||++|.|
T Consensus 76 ~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~g 154 (199)
T cd04110 76 YRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGI-SLFETSAKENIN 154 (199)
T ss_pred hCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEEECCCCcC
Confidence 899999999999886433222 223333333 35799999999999865443 1222 3343 789999999999
Q ss_pred HHHHHHHHHHhcCCc
Q psy17089 151 IKNFLENILTIELPY 165 (419)
Q Consensus 151 v~~l~~~i~~~~~~~ 165 (419)
++++|+.|.+.+...
T Consensus 155 i~~lf~~l~~~~~~~ 169 (199)
T cd04110 155 VEEMFNCITELVLRA 169 (199)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998876543
No 258
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.83 E-value=2.2e-19 Score=152.97 Aligned_cols=148 Identities=21% Similarity=0.179 Sum_probs=105.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|++|||||||++++++.. ......++.+.+.....+.+++. .+.+|||||+. ++......++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~---------~~~~~~~~~~ 70 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNE-FHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE---------RYQTITKQYY 70 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcH---------hHHhhHHHHh
Confidence 379999999999999999999754 22223344455555566677764 56799999987 4445566678
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.++|++++|+|..+.-+... ..+.+.+.. .+.|+++|+||+|+...+.. ..+. ..+ .+++++||++|.|
T Consensus 71 ~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~ 149 (161)
T cd04117 71 RRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYG-MDFFETSACTNSN 149 (161)
T ss_pred cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCC
Confidence 99999999999876432222 222222222 25799999999999766543 2222 234 3789999999999
Q ss_pred HHHHHHHHHHh
Q psy17089 151 IKNFLENILTI 161 (419)
Q Consensus 151 v~~l~~~i~~~ 161 (419)
++++|..|.+.
T Consensus 150 v~~~f~~l~~~ 160 (161)
T cd04117 150 IKESFTRLTEL 160 (161)
T ss_pred HHHHHHHHHhh
Confidence 99999999864
No 259
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.83 E-value=1.3e-19 Score=158.98 Aligned_cols=150 Identities=18% Similarity=0.216 Sum_probs=104.0
Q ss_pred EeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhc
Q psy17089 188 VGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEA 265 (419)
Q Consensus 188 ~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~a 265 (419)
+|.+|||||||+++++... +.....+++..+.....+..++ ..+.+|||||+ ++|.... ..+++.+
T Consensus 1 vG~~~vGKTsLi~r~~~~~-f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~----------e~~~~l~-~~~~~~a 68 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGE-FEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQ----------EKFGGLR-DGYYIQG 68 (200)
T ss_pred CCCCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCc----------hhhhhhh-HHHhcCC
Confidence 5999999999999999653 2211222222333334444443 47788999999 4454333 3588999
Q ss_pred CEEEEEecCCCCCCHHHH-HHHHHHHH--cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHH
Q psy17089 266 NVVILLLDAQQNISAQDI-NIANFIYE--SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNIN 342 (419)
Q Consensus 266 d~~i~v~d~~~~~~~~~~-~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 342 (419)
|++|+|+|++++.+++.. .|+..+.+ .+.|+++|+||+|+....... +.. . +.....++++++||++|.||+
T Consensus 69 d~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~---~~~-~-~~~~~~~~~~e~SAk~~~~v~ 143 (200)
T smart00176 69 QCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKA---KSI-T-FHRKKNLQYYDISAKSNYNFE 143 (200)
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCH---HHH-H-HHHHcCCEEEEEeCCCCCCHH
Confidence 999999999998777665 35555655 578999999999985322111 111 1 112234789999999999999
Q ss_pred HHHHHHHHHHhh
Q psy17089 343 SFMESINHVYDS 354 (419)
Q Consensus 343 ~l~~~i~~~~~~ 354 (419)
++|.++.+.+..
T Consensus 144 ~~F~~l~~~i~~ 155 (200)
T smart00176 144 KPFLWLARKLIG 155 (200)
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
No 260
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.83 E-value=1.4e-19 Score=158.47 Aligned_cols=153 Identities=20% Similarity=0.178 Sum_probs=107.9
Q ss_pred CC-CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHH
Q psy17089 1 MK-PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTK 77 (419)
Q Consensus 1 ~~-~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~ 77 (419)
|. .||+++|.+|||||||+++|.... +...+..+..+.....+.+++. .+.+|||||++ ++.....
T Consensus 1 ~~~~ki~~vG~~~vGKTsli~~~~~~~--f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e---------~~~~l~~ 69 (191)
T cd01875 1 MQSIKCVVVGDGAVGKTCLLICYTTNA--FPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQE---------EYDRLRT 69 (191)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCC--CCcCCCCceEeeeEEEEEECCEEEEEEEEECCCch---------hhhhhhh
Confidence 44 699999999999999999999753 3333333333333334556664 56799999997 5656667
Q ss_pred HHHHhCCEEEEEEeCCCCCCHhH--HHHHHHHHh--cCCCEEEEEeccCCCCCCc------------c-----hhHH-hc
Q psy17089 78 QAIIESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINSSI------------S-----LDFY-EL 135 (419)
Q Consensus 78 ~~~~~~d~il~v~d~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~------------~-----~~~~-~~ 135 (419)
.+++++|++++|+|.++..+... ..|...++. .+.|+++|+||+|+..... . ..+. ..
T Consensus 70 ~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 149 (191)
T cd01875 70 LSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQI 149 (191)
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 78899999999999886544333 223343332 4789999999999965432 1 1122 23
Q ss_pred CCCCeEEEeeccCCCHHHHHHHHHHhcCC
Q psy17089 136 GIGNPHIISALYGNGIKNFLENILTIELP 164 (419)
Q Consensus 136 ~~~~~~~vSa~~~~~v~~l~~~i~~~~~~ 164 (419)
+...++++||++|.|++++|..+.+.+..
T Consensus 150 ~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 150 HAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 43378999999999999999999976643
No 261
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.83 E-value=9.3e-20 Score=155.71 Aligned_cols=152 Identities=13% Similarity=0.149 Sum_probs=102.9
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHh
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~ 263 (419)
+|+++|.+|||||||+++|.+... .....|..... ...+...+..+.+|||||+.+.. .....+++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~-~~~~~pt~g~~--~~~i~~~~~~l~i~Dt~G~~~~~-----------~~~~~~~~ 66 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERS-LESVVPTTGFN--SVAIPTQDAIMELLEIGGSQNLR-----------KYWKRYLS 66 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-cccccccCCcc--eEEEeeCCeEEEEEECCCCcchh-----------HHHHHHHh
Confidence 379999999999999999997642 22222222222 23345556789999999994433 12236789
Q ss_pred hcCEEEEEecCCCCCCHHHH-HHHHHHHH--cCCcEEEEEEcccCCChhhHHHHHHHH-HHHcCCCCCCcEEEEeccC--
Q psy17089 264 EANVVILLLDAQQNISAQDI-NIANFIYE--SGRSLIVCVNKWDSIIHNQRKIIKNNI-KKKLNFLSFAMFNFISAIK-- 337 (419)
Q Consensus 264 ~ad~~i~v~d~~~~~~~~~~-~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~SA~~-- 337 (419)
.||++++|+|+++..+.... .++..+.. .++|+++|+||+|+........+...+ ...+......+++++||++
T Consensus 67 ~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~ 146 (164)
T cd04162 67 GSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDG 146 (164)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCC
Confidence 99999999999987554443 33444432 579999999999986554333332222 1222233356789999999
Q ss_pred ----CCCHHHHHHHHH
Q psy17089 338 ----LNNINSFMESIN 349 (419)
Q Consensus 338 ----g~gv~~l~~~i~ 349 (419)
++||.++|+.+.
T Consensus 147 s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 147 SPSRMEAVKDLLSQLI 162 (164)
T ss_pred ChhHHHHHHHHHHHHh
Confidence 999999998875
No 262
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.83 E-value=1.6e-19 Score=153.37 Aligned_cols=144 Identities=19% Similarity=0.258 Sum_probs=103.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhC
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 83 (419)
||+++|++|||||||+++|..... ....+ |.......+.+.+..+.+|||||+. .+......++..+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~~~~~ 67 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV--VTTIP--TIGFNVETVTYKNLKFQVWDLGGQT---------SIRPYWRCYYSNT 67 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCC--cCcCC--ccCcCeEEEEECCEEEEEEECCCCH---------HHHHHHHHHhcCC
Confidence 689999999999999999976532 22223 2223334566778899999999997 5555667788999
Q ss_pred CEEEEEEeCCCCCC--HhHHHHHHHHHh---cCCCEEEEEeccCCCCCCcc---hhHHhcC-----CCCeEEEeeccCCC
Q psy17089 84 DIIIFIVDGRQGLV--EQDKLITNFLRK---SGQPIVLVINKSENINSSIS---LDFYELG-----IGNPHIISALYGNG 150 (419)
Q Consensus 84 d~il~v~d~~~~~~--~~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~---~~~~~~~-----~~~~~~vSa~~~~~ 150 (419)
|++++|+|+++... ....++..+++. .++|+++|+||+|+.+.... ....... ..+++++||++|.|
T Consensus 68 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd04151 68 DAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEG 147 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCC
Confidence 99999999886422 223444444443 37899999999999754422 1111111 02589999999999
Q ss_pred HHHHHHHHHH
Q psy17089 151 IKNFLENILT 160 (419)
Q Consensus 151 v~~l~~~i~~ 160 (419)
++++++++.+
T Consensus 148 i~~l~~~l~~ 157 (158)
T cd04151 148 LDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHhc
Confidence 9999999874
No 263
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.83 E-value=1.4e-19 Score=156.90 Aligned_cols=147 Identities=27% Similarity=0.376 Sum_probs=106.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCC-CceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcch-hhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK-KGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~-~~~~~~~~~~~~~~~ 80 (419)
++|+|+|++|+|||||+|+|++.. ...++..+++|.++..... + ..+.+|||||+..... +.....+......++
T Consensus 19 ~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l 95 (179)
T TIGR03598 19 PEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYL 95 (179)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHHHHH
Confidence 689999999999999999999874 3445567778877665433 3 3799999999864321 111223433333444
Q ss_pred H---hCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc-------hhHHh-cCC-CCeEEEeeccC
Q psy17089 81 I---ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-------LDFYE-LGI-GNPHIISALYG 148 (419)
Q Consensus 81 ~---~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~-------~~~~~-~~~-~~~~~vSa~~~ 148 (419)
+ .++++++|+|+++++...+.++.+++...++|+++|+||+|+....+. .+... .+. .+++++||++|
T Consensus 96 ~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g 175 (179)
T TIGR03598 96 EKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKK 175 (179)
T ss_pred HhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCC
Confidence 4 468999999999888888888888888889999999999999754322 12222 221 27899999999
Q ss_pred CCHH
Q psy17089 149 NGIK 152 (419)
Q Consensus 149 ~~v~ 152 (419)
+|++
T Consensus 176 ~gi~ 179 (179)
T TIGR03598 176 TGID 179 (179)
T ss_pred CCCC
Confidence 9974
No 264
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.83 E-value=2.2e-19 Score=156.42 Aligned_cols=146 Identities=21% Similarity=0.252 Sum_probs=105.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.+|+++|.+|||||||+++|.+.... ... .|.......+.+++.++.+|||||+. .+......++.+
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~~~D~~G~~---------~~~~~~~~~~~~ 84 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDRLA--QHQ--PTQHPTSEELAIGNIKFTTFDLGGHQ---------QARRLWKDYFPE 84 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--ccC--CccccceEEEEECCEEEEEEECCCCH---------HHHHHHHHHhCC
Confidence 68999999999999999999986422 112 23444556677788999999999986 444556678899
Q ss_pred CCEEEEEEeCCCCC--CHhHHHHHHHHHh---cCCCEEEEEeccCCCCCCcchh---HHhc------------CCCCeEE
Q psy17089 83 SDIIIFIVDGRQGL--VEQDKLITNFLRK---SGQPIVLVINKSENINSSISLD---FYEL------------GIGNPHI 142 (419)
Q Consensus 83 ~d~il~v~d~~~~~--~~~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~~---~~~~------------~~~~~~~ 142 (419)
+|++++|+|+++.. .....++.+.++. .+.|+++|+||+|+.......+ .+.+ ....+++
T Consensus 85 ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~ 164 (184)
T smart00178 85 VNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFM 164 (184)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEE
Confidence 99999999997642 2222344444432 4789999999999865433211 1111 1224799
Q ss_pred EeeccCCCHHHHHHHHHHh
Q psy17089 143 ISALYGNGIKNFLENILTI 161 (419)
Q Consensus 143 vSa~~~~~v~~l~~~i~~~ 161 (419)
+||++|.|+++++++|.+.
T Consensus 165 ~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 165 CSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred eecccCCChHHHHHHHHhh
Confidence 9999999999999999753
No 265
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.83 E-value=1e-19 Score=157.98 Aligned_cols=150 Identities=16% Similarity=0.158 Sum_probs=106.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecC-CCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVAN-YPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
.||+++|.+|||||||+++|++.. +... .|++..+.....+..++. .+.+|||+|+. ++......+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~--f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~---------~~~~~~~~~ 69 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGE--FDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR---------EFINMLPLV 69 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCch---------hHHHhhHHH
Confidence 389999999999999999998753 2333 344445555566777774 56799999997 555566678
Q ss_pred HHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCC-----c-c----hhHH-hcCCCCeEEEe
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSS-----I-S----LDFY-ELGIGNPHIIS 144 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~-----~-~----~~~~-~~~~~~~~~vS 144 (419)
++++|++++|+|.++..+..+ ..+...++. ...| ++|+||+|+.... . . .++. ..+ ..++++|
T Consensus 70 ~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~e~S 147 (182)
T cd04128 70 CNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-APLIFCS 147 (182)
T ss_pred CcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC-CEEEEEe
Confidence 899999999999887544333 223333333 2345 7899999995311 1 1 1222 234 3789999
Q ss_pred eccCCCHHHHHHHHHHhcCCc
Q psy17089 145 ALYGNGIKNFLENILTIELPY 165 (419)
Q Consensus 145 a~~~~~v~~l~~~i~~~~~~~ 165 (419)
|++|.|++++|+.+.+.+.+.
T Consensus 148 Ak~g~~v~~lf~~l~~~l~~~ 168 (182)
T cd04128 148 TSHSINVQKIFKIVLAKAFDL 168 (182)
T ss_pred CCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999877654
No 266
>PTZ00369 Ras-like protein; Provisional
Probab=99.83 E-value=1.7e-19 Score=157.93 Aligned_cols=151 Identities=19% Similarity=0.193 Sum_probs=106.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
+||+++|++|||||||++++++.. +...+.++..+.....+.+++. .+.+|||||++ ++......++
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~l~~~~~ 74 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNH--FIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQE---------EYSAMRDQYM 74 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCc---------cchhhHHHHh
Confidence 799999999999999999999753 2334434433444455566664 46689999997 4445556678
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
.++|++++|+|.+++.+... ..+...+.+ .+.|+++|+||+|+...... ..+. ..+. +++++||++|.
T Consensus 75 ~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~-~~~e~Sak~~~ 153 (189)
T PTZ00369 75 RTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGI-PFLETSAKQRV 153 (189)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCC-EEEEeeCCCCC
Confidence 89999999999886543222 222222322 36799999999998655432 1222 3344 68999999999
Q ss_pred CHHHHHHHHHHhcCCc
Q psy17089 150 GIKNFLENILTIELPY 165 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~~ 165 (419)
|++++|..+.+.+.+.
T Consensus 154 gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 154 NVDEAFYELVREIRKY 169 (189)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999998776543
No 267
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.83 E-value=6.7e-20 Score=154.96 Aligned_cols=151 Identities=32% Similarity=0.379 Sum_probs=107.3
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+||+++|.+|+|||||++++++.. ......++++.+.....+..++ ..+.+|||||+.+... .. ..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----------~~-~~ 69 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRA----------IR-RL 69 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchH----------HH-HH
Confidence 699999999999999999999887 6667778888888777777777 6788899999854431 11 13
Q ss_pred HHhhcCEEEEEecCCCC-CCHHHH--HHHHHH---HHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 261 SILEANVVILLLDAQQN-ISAQDI--NIANFI---YESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~-~~~~~~--~~~~~~---~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
..+.++.++.++|.... .+..+. .+...+ ...+.|+++|+||+|+.... ........+......+++++|
T Consensus 70 ~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~s 145 (161)
T TIGR00231 70 YYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK----LKTHVAFLFAKLNGEPIIPLS 145 (161)
T ss_pred HHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch----hhHHHHHHHhhccCCceEEee
Confidence 44567777777776654 222221 122222 22388999999999997644 223333444445567899999
Q ss_pred ccCCCCHHHHHHHHH
Q psy17089 335 AIKLNNINSFMESIN 349 (419)
Q Consensus 335 A~~g~gv~~l~~~i~ 349 (419)
|++|.|++++++.|.
T Consensus 146 a~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 146 AETGKNIDSAFKIVE 160 (161)
T ss_pred cCCCCCHHHHHHHhh
Confidence 999999999998864
No 268
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.83 E-value=1.7e-19 Score=154.95 Aligned_cols=148 Identities=20% Similarity=0.246 Sum_probs=105.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCC-CCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANY-PGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
||+++|++|||||||+++|++.. +...+ +++..+.....+.++| ..+.+|||||++ ++......++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~--f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 70 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV--FDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE---------RFKCIASTYY 70 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH---------HHHhhHHHHh
Confidence 79999999999999999999853 33333 4444555555666666 457799999997 5666667789
Q ss_pred HhCCEEEEEEeCCCCCC--HhHHHHHHHHHhc---CCCEEEEEeccCCCCCCcc---h----hHH-hcCCCCeEEEeecc
Q psy17089 81 IESDIIIFIVDGRQGLV--EQDKLITNFLRKS---GQPIVLVINKSENINSSIS---L----DFY-ELGIGNPHIISALY 147 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~--~~~~~~~~~l~~~---~~p~ilv~NK~Dl~~~~~~---~----~~~-~~~~~~~~~vSa~~ 147 (419)
+++|++++|+|+.+..+ ....|+...++.. ..|+++|+||+|+...... . .+. .++. +++++||++
T Consensus 71 ~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~ 149 (170)
T cd04108 71 RGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQA-EYWSVSALS 149 (170)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCC-eEEEEECCC
Confidence 99999999999976322 2223333333321 2468999999998654332 1 222 2343 689999999
Q ss_pred CCCHHHHHHHHHHhcC
Q psy17089 148 GNGIKNFLENILTIEL 163 (419)
Q Consensus 148 ~~~v~~l~~~i~~~~~ 163 (419)
|.|++++|+.+.+...
T Consensus 150 g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 150 GENVREFFFRVAALTF 165 (170)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987654
No 269
>KOG0080|consensus
Probab=99.83 E-value=3.4e-20 Score=147.99 Aligned_cols=155 Identities=19% Similarity=0.136 Sum_probs=118.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCC-CCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYP-GLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~-~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
+||+++|++|||||||+-+|+... +....+ ++..|++...+.++|. ++.||||+|++ +|+..+..+
T Consensus 12 ~KiLlIGeSGVGKSSLllrFv~~~--fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqE---------rFRtLTpSy 80 (209)
T KOG0080|consen 12 FKILLIGESGVGKSSLLLRFVSNT--FDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQE---------RFRTLTPSY 80 (209)
T ss_pred EEEEEEccCCccHHHHHHHHHhcc--cCccCCceeeeeEEEEEEEEcCceEEEEEEeccchH---------hhhccCHhH
Confidence 699999999999999999999643 233333 3667888888999885 56699999998 899999999
Q ss_pred HHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCCEEEEEeccCCCCCCcc-----hhHHhcCCCCeEEEeeccCC
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFYELGIGNPHIISALYGN 149 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~-----~~~~~~~~~~~~~vSa~~~~ 149 (419)
+++|.++|+|+|.+.+.+... ..|++++.. .++-.++|+||+|..+.+.+ ..|.+.-..-++++||++.+
T Consensus 81 yRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~ 160 (209)
T KOG0080|consen 81 YRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRE 160 (209)
T ss_pred hccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhc
Confidence 999999999999876544333 333444432 35566899999998766554 34443222367999999999
Q ss_pred CHHHHHHHHHHhcCCcchh
Q psy17089 150 GIKNFLENILTIELPYKKF 168 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~~~~~ 168 (419)
|++..|+.+...+.+.+.+
T Consensus 161 ~V~~~FeelveKIi~tp~l 179 (209)
T KOG0080|consen 161 NVQCCFEELVEKIIETPSL 179 (209)
T ss_pred cHHHHHHHHHHHHhcCcch
Confidence 9999999998887776543
No 270
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.83 E-value=2.1e-19 Score=156.18 Aligned_cols=148 Identities=17% Similarity=0.232 Sum_probs=105.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.||+++|++|||||||++++.... +....|++ ......+...+..+.+|||||+. ++......++.+
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~--~~~~~~T~--~~~~~~~~~~~~~~~l~D~~G~~---------~~~~~~~~~~~~ 84 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGE--VVTTIPTI--GFNVETVEYKNLKFTMWDVGGQD---------KLRPLWRHYYQN 84 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCC--ccccCCcc--ccceEEEEECCEEEEEEECCCCH---------hHHHHHHHHhcC
Confidence 589999999999999999997542 22323333 23344566778899999999997 566677788999
Q ss_pred CCEEEEEEeCCCCC--CHhHHHHHHHHHh---cCCCEEEEEeccCCCCCCcchhHH-hcCCC-------CeEEEeeccCC
Q psy17089 83 SDIIIFIVDGRQGL--VEQDKLITNFLRK---SGQPIVLVINKSENINSSISLDFY-ELGIG-------NPHIISALYGN 149 (419)
Q Consensus 83 ~d~il~v~d~~~~~--~~~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~~~~-~~~~~-------~~~~vSa~~~~ 149 (419)
+|+++||+|+++.. .....++.+.++. .+.|+++|+||+|+.......+.. .++.. .++++||++|.
T Consensus 85 ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~ 164 (182)
T PTZ00133 85 TNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQ 164 (182)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCC
Confidence 99999999987532 2222344444432 367999999999986543322211 22221 24579999999
Q ss_pred CHHHHHHHHHHhcC
Q psy17089 150 GIKNFLENILTIEL 163 (419)
Q Consensus 150 ~v~~l~~~i~~~~~ 163 (419)
|+++++++|.+.+.
T Consensus 165 gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 165 GLYEGLDWLSANIK 178 (182)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987654
No 271
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.83 E-value=2.9e-19 Score=152.68 Aligned_cols=149 Identities=20% Similarity=0.195 Sum_probs=104.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCC-CCccceEEEEEEC---CeEEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPG-LTRDRHYGEGYIG---KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~-~t~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
||+++|++|||||||+++|......+...+.. +..+.....+.++ ...+.+|||||+. .+......+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~ 72 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE---------LYSDMVSNY 72 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH---------HHHHHHHHH
Confidence 79999999999999999998643223334433 3344444444443 2578899999986 445556677
Q ss_pred HHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh--cCCCEEEEEeccCCCCCCcc----hhHH--hcCCCCeEEEeeccCCC
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK--SGQPIVLVINKSENINSSIS----LDFY--ELGIGNPHIISALYGNG 150 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~----~~~~--~~~~~~~~~vSa~~~~~ 150 (419)
+.++|++++|+|.++..+... ..+.+.+.. .+.|+++|+||+|+...... ...+ ..+. +++++||+++.|
T Consensus 73 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 151 (164)
T cd04101 73 WESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQL-KFFKTSALRGVG 151 (164)
T ss_pred hCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 899999999999886433221 233333333 36899999999999766544 1222 2333 689999999999
Q ss_pred HHHHHHHHHHhc
Q psy17089 151 IKNFLENILTIE 162 (419)
Q Consensus 151 v~~l~~~i~~~~ 162 (419)
++++++.+.+.+
T Consensus 152 i~~l~~~l~~~~ 163 (164)
T cd04101 152 YEEPFESLARAF 163 (164)
T ss_pred hHHHHHHHHHHh
Confidence 999999998754
No 272
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.83 E-value=1.8e-19 Score=144.59 Aligned_cols=116 Identities=41% Similarity=0.610 Sum_probs=96.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhC
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 83 (419)
+|+|+|.+|+|||||+|+|++.+.+.++..+++|++.....+.+++..+.++||||+.+.............+...+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 68999999999999999999977777889999999998888889999999999999986542322223445566777999
Q ss_pred CEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEec
Q psy17089 84 DIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINK 120 (419)
Q Consensus 84 d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK 120 (419)
|+++||+|+.+.....+..++++++ .++|+++|+||
T Consensus 81 d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 9999999987745566688888887 79999999998
No 273
>KOG1191|consensus
Probab=99.83 E-value=1.2e-19 Score=170.51 Aligned_cols=161 Identities=27% Similarity=0.374 Sum_probs=131.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
..|+|+|+||||||||+|+|+..+.+++++.+|||+|.....++++|.++.++||+|+-+...+...........+.+..
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~ 348 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIER 348 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhh
Confidence 57999999999999999999999999999999999999999999999999999999997644345555666778888999
Q ss_pred CCEEEEEEeCCCCCCHhHHHHHHHHHh------------cCCCEEEEEeccCCCCCCcc-----hhHH---hcCCCCe-E
Q psy17089 83 SDIIIFIVDGRQGLVEQDKLITNFLRK------------SGQPIVLVINKSENINSSIS-----LDFY---ELGIGNP-H 141 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~~~~~~~~~l~~------------~~~p~ilv~NK~Dl~~~~~~-----~~~~---~~~~~~~-~ 141 (419)
+|++++|+|+....++++..+.+.+.. ...|++++.||.|+...-.. ..+. ..+..++ .
T Consensus 349 advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~ 428 (531)
T KOG1191|consen 349 ADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVV 428 (531)
T ss_pred cCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccceEE
Confidence 999999999977778888777777764 13689999999999887332 1111 1122233 4
Q ss_pred EEeeccCCCHHHHHHHHHHhcC
Q psy17089 142 IISALYGNGIKNFLENILTIEL 163 (419)
Q Consensus 142 ~vSa~~~~~v~~l~~~i~~~~~ 163 (419)
.+|+++++|++.|...+.+.+.
T Consensus 429 ~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 429 EVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred EeeechhhhHHHHHHHHHHHHH
Confidence 5999999999999999887654
No 274
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.83 E-value=2.5e-19 Score=152.59 Aligned_cols=148 Identities=19% Similarity=0.135 Sum_probs=105.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|++|||||||+++|++.... ....++.+.+.....+.+++. .+.+|||||+. .+.......+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~---------~~~~~~~~~~ 70 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFK-EDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE---------RFRSVTRSYY 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCEEEEEEEEECcchH---------HHHHhHHHHh
Confidence 37999999999999999999976421 222333444444445566663 67799999986 4555566778
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHH---hcCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLR---KSGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~---~~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
+++|++++|+|..++.+... ..+...++ ..+.|+++|+||+|+...... ..+. ..+ ..++++||+++.|
T Consensus 71 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 149 (161)
T cd04113 71 RGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENG-LLFLETSALTGEN 149 (161)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcC-CEEEEEECCCCCC
Confidence 89999999999987544332 22223232 247899999999999765443 2222 344 4799999999999
Q ss_pred HHHHHHHHHHh
Q psy17089 151 IKNFLENILTI 161 (419)
Q Consensus 151 v~~l~~~i~~~ 161 (419)
++++++.+.+.
T Consensus 150 i~~~~~~~~~~ 160 (161)
T cd04113 150 VEEAFLKCARS 160 (161)
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 275
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.83 E-value=2.6e-19 Score=181.23 Aligned_cols=160 Identities=21% Similarity=0.263 Sum_probs=126.1
Q ss_pred EEEEEeCCCCchhHHHHHHhCCc--eeeecCCCCccceeeeEeeEE-eCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGEN--RVITYDTPGTTRDSIKSLFEY-NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~--~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
-|+++|++++|||||+++|+|.+ ........|+|.+.....+.. ++..+.+|||||+ ++|. ..+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh----------e~fi-~~m~~ 70 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH----------EKFL-SNMLA 70 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH----------HHHH-HHHHH
Confidence 58999999999999999999753 222334468888876665544 4567899999999 5553 44567
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCc-EEEEEEcccCCChhhHHHHHHHHHHHcCCC--CCCcEEEEeccC
Q psy17089 261 SILEANVVILLLDAQQNISAQDINIANFIYESGRS-LIVCVNKWDSIIHNQRKIIKNNIKKKLNFL--SFAMFNFISAIK 337 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~SA~~ 337 (419)
.+..+|++++|+|++.+...++.+.+..+...++| +++|+||+|+.+........+++.+.+... ...+++++||++
T Consensus 71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~t 150 (614)
T PRK10512 71 GVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATE 150 (614)
T ss_pred HhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCC
Confidence 88899999999999999888988888888888887 579999999987655555556666655433 247899999999
Q ss_pred CCCHHHHHHHHHHHHhh
Q psy17089 338 LNNINSFMESINHVYDS 354 (419)
Q Consensus 338 g~gv~~l~~~i~~~~~~ 354 (419)
|.|+++|++.|.+....
T Consensus 151 G~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 151 GRGIDALREHLLQLPER 167 (614)
T ss_pred CCCCHHHHHHHHHhhcc
Confidence 99999999999876543
No 276
>KOG0091|consensus
Probab=99.83 E-value=4.9e-20 Score=147.55 Aligned_cols=159 Identities=20% Similarity=0.166 Sum_probs=119.3
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEe-C--eeEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN-N--KKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
.+++.++|++-||||||+..++....+.. ..|++..|+....+++. | .++.+|||+|| |+|+ +.+
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfael-sdptvgvdffarlie~~pg~riklqlwdtagq----------erfr-sit 75 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAEL-SDPTVGVDFFARLIELRPGYRIKLQLWDTAGQ----------ERFR-SIT 75 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCccccc-CCCccchHHHHHHHhcCCCcEEEEEEeeccch----------HHHH-HHH
Confidence 37899999999999999999997754444 45677777766666653 3 36778999999 7776 566
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH-----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEE
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDIN-IANFIYE-----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (419)
..|++++-++++|+|+++..+++... |+..+.. ..+-+.+|+.|+||....+. ..++ .+.++...+..+++
T Consensus 76 ksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqV--t~EE-aEklAa~hgM~FVE 152 (213)
T KOG0091|consen 76 KSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQV--TAEE-AEKLAASHGMAFVE 152 (213)
T ss_pred HHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccc--cHHH-HHHHHHhcCceEEE
Confidence 78999999999999999998888764 4444332 12346899999999754332 2222 23344445689999
Q ss_pred EeccCCCCHHHHHHHHHHHHhhc
Q psy17089 333 ISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
+||++|.||++.|..+.+.+...
T Consensus 153 TSak~g~NVeEAF~mlaqeIf~~ 175 (213)
T KOG0091|consen 153 TSAKNGCNVEEAFDMLAQEIFQA 175 (213)
T ss_pred ecccCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999988875543
No 277
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.83 E-value=4.9e-20 Score=176.06 Aligned_cols=226 Identities=27% Similarity=0.319 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc----hhH----H-hcCC--CC
Q psy17089 71 EMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDF----Y-ELGI--GN 139 (419)
Q Consensus 71 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~----~~~----~-~~~~--~~ 139 (419)
.+......+...++++++|+|+.+.......++.+.+. ++|+++|+||+|+...... .++ . ..+. ..
T Consensus 52 ~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~--~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~ 129 (360)
T TIGR03597 52 DFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVG--GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVD 129 (360)
T ss_pred HHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhC--CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCc
Confidence 56666667778999999999987655444455555443 7899999999999765431 222 2 3444 26
Q ss_pred eEEEeeccCCCHHHHHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCc-----eeeecCCC
Q psy17089 140 PHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGEN-----RVITYDTP 214 (419)
Q Consensus 140 ~~~vSa~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~-----~~~~~~~~ 214 (419)
++++||++|.|++++++.+.+.. ...+++++|.+|||||||+|+|++.. ...++..|
T Consensus 130 i~~vSAk~g~gv~eL~~~l~~~~------------------~~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~p 191 (360)
T TIGR03597 130 IILVSAKKGNGIDELLDKIKKAR------------------NKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFP 191 (360)
T ss_pred EEEecCCCCCCHHHHHHHHHHHh------------------CCCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCC
Confidence 89999999999999999997531 12589999999999999999999753 35688999
Q ss_pred CccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHH---hhcCEEEEEecCCCCCCHHHHHHHHHHHH
Q psy17089 215 GTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI---LEANVVILLLDAQQNISAQDINIANFIYE 291 (419)
Q Consensus 215 ~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~---~~ad~~i~v~d~~~~~~~~~~~~~~~~~~ 291 (419)
|+|.+.....+ +..+.++||||+.......+.++ ...+.++ +......+.+|..+.....++..++++..
T Consensus 192 gtT~~~~~~~~---~~~~~l~DtPG~~~~~~~~~~l~----~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~ 264 (360)
T TIGR03597 192 GTTLDLIEIPL---DDGHSLYDTPGIINSHQMAHYLD----KKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKG 264 (360)
T ss_pred CeEeeEEEEEe---CCCCEEEECCCCCChhHhhhhcC----HHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecC
Confidence 99998664433 34578999999976532221111 1111111 23566777777776555555544555555
Q ss_pred cCCcEEEEEEcccCCChhhHHHHHHHHHHHcC
Q psy17089 292 SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLN 323 (419)
Q Consensus 292 ~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 323 (419)
.+..+.+.++|.+.......+...+.+.+.+.
T Consensus 265 ~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~~g 296 (360)
T TIGR03597 265 EKTSFTFYVSNELNIHRTKLENADELYNKHLG 296 (360)
T ss_pred CceEEEEEccCCceeEeechhhhHHHHHhhcC
Confidence 56667788888776544333333333444433
No 278
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.83 E-value=1.2e-19 Score=183.46 Aligned_cols=154 Identities=22% Similarity=0.290 Sum_probs=116.0
Q ss_pred eCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEE
Q psy17089 189 GKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVV 268 (419)
Q Consensus 189 G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ 268 (419)
|.||||||||+|+|++.. ..+++++|+|.+.....+.+++.++.+|||||+.+...... .|+. .+.......+|++
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~-~e~v--~~~~l~~~~aDvv 76 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSL-EEEV--ARDYLLNEKPDLV 76 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccch-HHHH--HHHHHhhcCCCEE
Confidence 899999999999999885 47889999999998888888889999999999977643211 1111 1111123479999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHHHHHHHH
Q psy17089 269 ILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348 (419)
Q Consensus 269 i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i 348 (419)
++|+|+++. +.+..+...+.+.++|+++|+||+|+.+........+.+.+.+ +++++++||++|.|++++++.+
T Consensus 77 I~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l----g~pvv~tSA~tg~Gi~eL~~~i 150 (591)
T TIGR00437 77 VNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERL----GVPVVPTSATEGRGIERLKDAI 150 (591)
T ss_pred EEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHc----CCCEEEEECCCCCCHHHHHHHH
Confidence 999999874 3445566667778999999999999864433222223333333 3799999999999999999999
Q ss_pred HHHH
Q psy17089 349 NHVY 352 (419)
Q Consensus 349 ~~~~ 352 (419)
.+..
T Consensus 151 ~~~~ 154 (591)
T TIGR00437 151 RKAI 154 (591)
T ss_pred HHHh
Confidence 8764
No 279
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.83 E-value=8.2e-20 Score=152.21 Aligned_cols=136 Identities=15% Similarity=0.172 Sum_probs=94.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
+||+++|++|||||||+|+|++.... ..+ |. .+.+.+ .+|||||+... . +.+.......+++
T Consensus 1 ~kv~liG~~~vGKSsL~~~l~~~~~~---~~~--t~-----~~~~~~---~~iDt~G~~~~----~-~~~~~~~~~~~~~ 62 (142)
T TIGR02528 1 KRIMFIGSVGCGKTTLTQALQGEEIL---YKK--TQ-----AVEYND---GAIDTPGEYVE----N-RRLYSALIVTAAD 62 (142)
T ss_pred CeEEEECCCCCCHHHHHHHHcCCccc---ccc--ce-----eEEEcC---eeecCchhhhh----h-HHHHHHHHHHhhc
Confidence 48999999999999999999986421 111 11 223333 68999998421 1 1222233345899
Q ss_pred CCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc----hhHH-hcCCCCeEEEeeccCCCHHHHHHH
Q psy17089 83 SDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGIKNFLEN 157 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~----~~~~-~~~~~~~~~vSa~~~~~v~~l~~~ 157 (419)
+|++++|+|+.++.+.....+... ...|+++|+||+|+...... .++. ..+..+++++||++|.|++++++.
T Consensus 63 ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 139 (142)
T TIGR02528 63 ADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDY 139 (142)
T ss_pred CCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHH
Confidence 999999999987766555444443 34699999999999754322 2333 334447899999999999999998
Q ss_pred HH
Q psy17089 158 IL 159 (419)
Q Consensus 158 i~ 159 (419)
+.
T Consensus 140 l~ 141 (142)
T TIGR02528 140 LN 141 (142)
T ss_pred Hh
Confidence 75
No 280
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.83 E-value=1.7e-19 Score=181.15 Aligned_cols=158 Identities=19% Similarity=0.242 Sum_probs=119.2
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe-eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK-KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
.++++|+++|++|+|||||+++|.+... .....+|+|.+.....+.+++. .+.+|||||+.++. ..+
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v-~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~----------~~r- 152 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKV-AQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT----------SMR- 152 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCc-ccccCCceeecceEEEEEECCCcEEEEEECCCCcchh----------hHH-
Confidence 4668999999999999999999998643 3445678888877777777544 89999999994442 222
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHH---cCCC-CCCcEEEEe
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKK---LNFL-SFAMFNFIS 334 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~S 334 (419)
.+++..+|++++|+|++++...+..+.+..+...++|+++++||+|+.+.. .+.....+... ...+ ...+++++|
T Consensus 153 ~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~-~e~v~~~L~~~g~~~~~~~~~~~~v~iS 231 (587)
T TIGR00487 153 ARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEAN-PDRVKQELSEYGLVPEDWGGDTIFVPVS 231 (587)
T ss_pred HhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCC-HHHHHHHHHHhhhhHHhcCCCceEEEEE
Confidence 256788999999999999888888888888888899999999999996422 12222222211 0111 235799999
Q ss_pred ccCCCCHHHHHHHHHH
Q psy17089 335 AIKLNNINSFMESINH 350 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~ 350 (419)
|++|.|+++|++.+..
T Consensus 232 AktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 232 ALTGDGIDELLDMILL 247 (587)
T ss_pred CCCCCChHHHHHhhhh
Confidence 9999999999998864
No 281
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.83 E-value=2.1e-19 Score=156.10 Aligned_cols=157 Identities=20% Similarity=0.235 Sum_probs=107.4
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
.||+++|.+|||||||++++++.. ....+.+++..........++. .+.+|||||+. +|... ...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~-~~~ 68 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGH--FVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQD----------EYSIL-PQK 68 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CccccCcchhhhEEEEEEECCEEEEEEEEECCChH----------hhHHH-HHH
Confidence 589999999999999999999764 2333444444333444555544 56789999983 33222 225
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEEcccCCChhhHH-HHHHHHHHHcCCCCCCcEEEEe
Q psy17089 261 SILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S 334 (419)
++..+|++++++|.++..+.+... ++..+.+ .+.|+++|+||+|+....... .....+...+ ..+++++|
T Consensus 69 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~S 144 (180)
T cd04137 69 YSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESW----GAAFLESS 144 (180)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHc----CCeEEEEe
Confidence 778899999999999876655543 3344433 468999999999986432211 1112222222 26899999
Q ss_pred ccCCCCHHHHHHHHHHHHhhcC
Q psy17089 335 AIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~~~~ 356 (419)
|++|.|+.+++.++.+.+....
T Consensus 145 a~~~~gv~~l~~~l~~~~~~~~ 166 (180)
T cd04137 145 ARENENVEEAFELLIEEIEKVE 166 (180)
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999998775443
No 282
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.83 E-value=3.4e-19 Score=153.20 Aligned_cols=149 Identities=18% Similarity=0.158 Sum_probs=105.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|++|||||||+++|++.. ......++.+.+.....+.+++. .+.+|||||++ ++......++
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~---------~~~~~~~~~~ 75 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNK-FDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE---------RFRSLRTPFY 75 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC-CCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChH---------HHHHhHHHHh
Confidence 489999999999999999999753 22223344444544556666665 56699999987 5556667788
Q ss_pred HhCCEEEEEEeCCCCCCH--hHHHHHHHHHh------cCCCEEEEEeccCCCCCCcc----hhHH-hcCCCCeEEEeecc
Q psy17089 81 IESDIIIFIVDGRQGLVE--QDKLITNFLRK------SGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALY 147 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~--~~~~~~~~l~~------~~~p~ilv~NK~Dl~~~~~~----~~~~-~~~~~~~~~vSa~~ 147 (419)
+++|++++|+|..++.+. ...|....+.. .+.|+++|+||+|+..+... .++. ..+...++++||++
T Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 155 (170)
T cd04116 76 RGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKD 155 (170)
T ss_pred cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCC
Confidence 999999999998764322 22333333321 35799999999999744322 2232 34445789999999
Q ss_pred CCCHHHHHHHHHHh
Q psy17089 148 GNGIKNFLENILTI 161 (419)
Q Consensus 148 ~~~v~~l~~~i~~~ 161 (419)
|.|+.++|+.+.+.
T Consensus 156 ~~~v~~~~~~~~~~ 169 (170)
T cd04116 156 ATNVAAAFEEAVRR 169 (170)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998864
No 283
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.83 E-value=2.4e-19 Score=154.64 Aligned_cols=148 Identities=20% Similarity=0.199 Sum_probs=104.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|++|||||||+.+++... +...+.++..+.....+.+++ ..+.+|||||+. .+......++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~--f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 70 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE---------DYDRLRPLSY 70 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCCcCCCcceeeeEEEEEECCEEEEEEEEECCCch---------hhhhhhhhhc
Confidence 389999999999999999999743 344444444444444556666 456799999987 4444555678
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHh--cCCCEEEEEeccCCCCCCc------------c-----hhHH-hcCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINSSI------------S-----LDFY-ELGIG 138 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~------------~-----~~~~-~~~~~ 138 (419)
.++|++++|+|.+++.+... ..+...+.. .+.|+++|+||+|+..... + .++. ..+..
T Consensus 71 ~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 150 (174)
T cd01871 71 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 150 (174)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCc
Confidence 89999999999987544333 224444433 3689999999999964321 1 1122 33433
Q ss_pred CeEEEeeccCCCHHHHHHHHHHh
Q psy17089 139 NPHIISALYGNGIKNFLENILTI 161 (419)
Q Consensus 139 ~~~~vSa~~~~~v~~l~~~i~~~ 161 (419)
.++++||++|.|++++|+.+.+.
T Consensus 151 ~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 151 KYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred EEEEecccccCCHHHHHHHHHHh
Confidence 78999999999999999998764
No 284
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.83 E-value=1.3e-19 Score=153.48 Aligned_cols=147 Identities=17% Similarity=0.228 Sum_probs=97.4
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHh
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~ 263 (419)
+|+++|.+|+|||||+|+|.+... .. ..+ ..+.+.+. .+|||||+..... + + ......+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~--~~---~~~-----~~v~~~~~--~~iDtpG~~~~~~-----~-~-~~~~~~~~~ 63 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT--LA---RKT-----QAVEFNDK--GDIDTPGEYFSHP-----R-W-YHALITTLQ 63 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc--cC---ccc-----eEEEECCC--CcccCCccccCCH-----H-H-HHHHHHHHh
Confidence 799999999999999999987642 11 111 11222222 2699999854431 1 1 122235678
Q ss_pred hcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHHH
Q psy17089 264 EANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINS 343 (419)
Q Consensus 264 ~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~ 343 (419)
.||++++|+|++++.+.....++.. ..+.|+++++||+|+.+.. .....+.+ +.+.. ..|++++||++|.|+++
T Consensus 64 ~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~-~~~~~~~~-~~~~~--~~p~~~~Sa~~g~gi~~ 137 (158)
T PRK15467 64 DVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDAD-VAATRKLL-LETGF--EEPIFELNSHDPQSVQQ 137 (158)
T ss_pred cCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCccc-HHHHHHHH-HHcCC--CCCEEEEECCCccCHHH
Confidence 9999999999998765433332221 2468999999999985432 22222222 12221 25999999999999999
Q ss_pred HHHHHHHHHhhc
Q psy17089 344 FMESINHVYDSS 355 (419)
Q Consensus 344 l~~~i~~~~~~~ 355 (419)
||+.+.+.....
T Consensus 138 l~~~l~~~~~~~ 149 (158)
T PRK15467 138 LVDYLASLTKQE 149 (158)
T ss_pred HHHHHHHhchhh
Confidence 999998877543
No 285
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.83 E-value=3e-19 Score=151.69 Aligned_cols=152 Identities=22% Similarity=0.189 Sum_probs=106.6
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHHHHH
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~ 261 (419)
||+++|++|||||||++++++.. ....+.+++.+.....+..++ ..+.+||+||+.. +... ...+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~-~~~~ 67 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE----------FSAM-RDLY 67 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH----------HHHH-HHHH
Confidence 58999999999999999999775 344555666666666666654 4678899999832 2222 2357
Q ss_pred HhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEecc
Q psy17089 262 ILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAI 336 (419)
Q Consensus 262 ~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 336 (419)
++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+....... .+......... ..+++++||+
T Consensus 68 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~-~~~~~~~S~~ 144 (160)
T cd00876 68 IRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVS--KEEGKALAKEW-GCPFIETSAK 144 (160)
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceec--HHHHHHHHHHc-CCcEEEeccC
Confidence 7889999999999987655553 33443433 379999999999997532211 11111111111 2689999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy17089 337 KLNNINSFMESINHV 351 (419)
Q Consensus 337 ~g~gv~~l~~~i~~~ 351 (419)
+|.|++++++.|.+.
T Consensus 145 ~~~~i~~l~~~l~~~ 159 (160)
T cd00876 145 DNINIDEVFKLLVRE 159 (160)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999998764
No 286
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.83 E-value=2.2e-19 Score=156.26 Aligned_cols=151 Identities=21% Similarity=0.270 Sum_probs=104.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEE---CCeEEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI---GKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
.||+++|.+|||||||+++|++.. +....++.+.+.....+.+ .+..+.+|||||++ ++......+
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~---------~~~~~~~~~ 72 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNE--FVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE---------KLRPLWKSY 72 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--cCCcCCccccceeEEEeeccCCCceEEEEEECCCcH---------hHHHHHHHH
Confidence 489999999999999999998754 2333444444444444433 35689999999986 555566777
Q ss_pred HHhCCEEEEEEeCCCCCCHhH--HHHHHHH---HhcCCCEEEEEeccCCCCCCcc---hhHHh---cC---CCCeEEEee
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD--KLITNFL---RKSGQPIVLVINKSENINSSIS---LDFYE---LG---IGNPHIISA 145 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~--~~~~~~l---~~~~~p~ilv~NK~Dl~~~~~~---~~~~~---~~---~~~~~~vSa 145 (419)
+.++|++++|+|+.+..+... .++.+.. ...++|+++|+||+|+...... ..+.. .. ..+++++||
T Consensus 73 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 152 (183)
T cd04152 73 TRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACA 152 (183)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeec
Confidence 889999999999886422211 2222222 2357899999999998754322 12221 11 124689999
Q ss_pred ccCCCHHHHHHHHHHhcCC
Q psy17089 146 LYGNGIKNFLENILTIELP 164 (419)
Q Consensus 146 ~~~~~v~~l~~~i~~~~~~ 164 (419)
++|.|++++++.|.+.+.+
T Consensus 153 ~~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 153 IIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred ccCCCHHHHHHHHHHHHHH
Confidence 9999999999999977744
No 287
>KOG0079|consensus
Probab=99.83 E-value=3.8e-20 Score=145.64 Aligned_cols=151 Identities=23% Similarity=0.267 Sum_probs=118.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCC-CCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYP-GLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~-~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
++.+|+|++|||||||+.+|... .+...|. ++..|...+.+.++|. .+.||||+|++ +|...+..+
T Consensus 9 fkllIigDsgVGKssLl~rF~dd--tFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqE---------rFrtitsty 77 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADD--TFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQE---------RFRTITSTY 77 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhc--ccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHH---------HHHHHHHHH
Confidence 57889999999999999999864 3445544 5667899999999885 56699999998 888999999
Q ss_pred HHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh--cCCCEEEEEeccCCCCCCcc--h---hHH-hcCCCCeEEEeeccCCC
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK--SGQPIVLVINKSENINSSIS--L---DFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~--~---~~~-~~~~~~~~~vSa~~~~~ 150 (419)
+++.+++++|+|.+++.+..+ ..|++.++. -..|-++|+||+|+..++.+ . .|. ..|+ +.|++||+...|
T Consensus 78 yrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgi-e~FETSaKe~~N 156 (198)
T KOG0079|consen 78 YRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGI-ELFETSAKENEN 156 (198)
T ss_pred ccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCc-hheehhhhhccc
Confidence 999999999999887544333 333333332 25688999999999998876 2 222 3455 789999999999
Q ss_pred HHHHHHHHHHhcCCc
Q psy17089 151 IKNFLENILTIELPY 165 (419)
Q Consensus 151 v~~l~~~i~~~~~~~ 165 (419)
++.+|.-|.+.+...
T Consensus 157 vE~mF~cit~qvl~~ 171 (198)
T KOG0079|consen 157 VEAMFHCITKQVLQA 171 (198)
T ss_pred chHHHHHHHHHHHHH
Confidence 999999888765543
No 288
>KOG1423|consensus
Probab=99.83 E-value=1.5e-19 Score=159.87 Aligned_cols=163 Identities=25% Similarity=0.411 Sum_probs=133.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcc---hhhHHHHHHHHHHHHH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV---KKGIMHEMTKQTKQAI 80 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~---~~~~~~~~~~~~~~~~ 80 (419)
.|+++|.||||||||.|.++|.+.+.++....||+....+.+.-+..++.+.||||..... .+.....+......++
T Consensus 74 ~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~ 153 (379)
T KOG1423|consen 74 YVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAA 153 (379)
T ss_pred EEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999997553 2233334455678899
Q ss_pred HhCCEEEEEEeCCCCCCHhHHHHHHHHHh-cCCCEEEEEeccCCCCCCcc-----------------hhHH----h----
Q psy17089 81 IESDIIIFIVDGRQGLVEQDKLITNFLRK-SGQPIVLVINKSENINSSIS-----------------LDFY----E---- 134 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~~~~~~~l~~-~~~p~ilv~NK~Dl~~~~~~-----------------~~~~----~---- 134 (419)
.+||++++|+|+.+.-......++..+++ ..+|.++|.||.|....... .++. .
T Consensus 154 q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~ 233 (379)
T KOG1423|consen 154 QNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSD 233 (379)
T ss_pred hhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcc
Confidence 99999999999987556666777777776 57899999999998765532 0111 0
Q ss_pred ---------cCCCCeEEEeeccCCCHHHHHHHHHHhcCCcc
Q psy17089 135 ---------LGIGNPHIISALYGNGIKNFLENILTIELPYK 166 (419)
Q Consensus 135 ---------~~~~~~~~vSa~~~~~v~~l~~~i~~~~~~~~ 166 (419)
.++..+|.+||+.|.|++++.+++....+..+
T Consensus 234 ~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp 274 (379)
T KOG1423|consen 234 EKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP 274 (379)
T ss_pred cccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCC
Confidence 12456899999999999999999998888765
No 289
>KOG0086|consensus
Probab=99.83 E-value=1.8e-19 Score=142.60 Aligned_cols=159 Identities=18% Similarity=0.125 Sum_probs=114.3
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
--+|+.++|..|.|||.|+.++..... .-...-.+..++....+...+ .++.+|||+|| |+|+ .-+
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kf-kDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQ----------ErFR-SVt 75 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKF-KDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQ----------ERFR-SVT 75 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhh-cccccceeeeeecceeeeecCcEEEEEEeecccH----------HHHH-HHH
Confidence 347999999999999999999986532 211112234444444455544 47788999999 7776 455
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHHH-HHHHHH---HcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDIN-IANFIY---ESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~---~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
..|+++|.++++|+|++++.++..+. |+.-++ ..++.+++++||-||....+.. + .-...+.+-+...+.++|
T Consensus 76 RsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~Vt-f--lEAs~FaqEnel~flETS 152 (214)
T KOG0086|consen 76 RSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVT-F--LEASRFAQENELMFLETS 152 (214)
T ss_pred HHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhh-H--HHHHhhhcccceeeeeec
Confidence 68999999999999999998887763 444333 3678899999999996544322 1 112344445556889999
Q ss_pred ccCCCCHHHHHHHHHHHHhh
Q psy17089 335 AIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~~ 354 (419)
|++|+||+|.|-...+.+..
T Consensus 153 a~TGeNVEEaFl~c~~tIl~ 172 (214)
T KOG0086|consen 153 ALTGENVEEAFLKCARTILN 172 (214)
T ss_pred ccccccHHHHHHHHHHHHHH
Confidence 99999999999887776543
No 290
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.82 E-value=3.6e-19 Score=150.70 Aligned_cols=152 Identities=19% Similarity=0.142 Sum_probs=101.5
Q ss_pred EEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhh
Q psy17089 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILE 264 (419)
Q Consensus 185 i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ 264 (419)
|+++|++|||||||+|+|.+.+. .....+++..+. ..+...+..+.+|||||+. .+. .....+++.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~----------~~~-~~~~~~~~~ 67 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF-SEDTIPTVGFNM--RKVTKGNVTLKVWDLGGQP----------RFR-SMWERYCRG 67 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC-CcCccCCCCcce--EEEEECCEEEEEEECCCCH----------hHH-HHHHHHHhc
Confidence 79999999999999999998753 222333333332 2344556788999999983 332 122357889
Q ss_pred cCEEEEEecCCCCCCHHHH-HHHHHHH----HcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCC
Q psy17089 265 ANVVILLLDAQQNISAQDI-NIANFIY----ESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLN 339 (419)
Q Consensus 265 ad~~i~v~d~~~~~~~~~~-~~~~~~~----~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 339 (419)
+|++++|+|+++..+.... .++..+. ..++|+++|+||+|+.+..........+..........+++++||++|.
T Consensus 68 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 147 (159)
T cd04159 68 VNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKT 147 (159)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCC
Confidence 9999999999875433322 2333322 2578999999999987654333222222111112234678999999999
Q ss_pred CHHHHHHHHHH
Q psy17089 340 NINSFMESINH 350 (419)
Q Consensus 340 gv~~l~~~i~~ 350 (419)
|++++++++.+
T Consensus 148 gi~~l~~~l~~ 158 (159)
T cd04159 148 NIDIVLDWLIK 158 (159)
T ss_pred ChHHHHHHHhh
Confidence 99999998865
No 291
>PLN03110 Rab GTPase; Provisional
Probab=99.82 E-value=3.9e-19 Score=158.68 Aligned_cols=151 Identities=19% Similarity=0.122 Sum_probs=111.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|++|||||||+++|++... .....++++.+.....+.+++ ..+.+|||||++ ++......++
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~-~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~---------~~~~~~~~~~ 82 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEF-CLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE---------RYRAITSAYY 82 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcH---------HHHHHHHHHh
Confidence 5899999999999999999997642 223345555666666777776 467799999987 5666677788
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
++++++++|+|..+..+... ..++..++. .+.|+++|+||+|+...+.. ..+. ..+. +++++||++|.|
T Consensus 83 ~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~-~~~e~SA~~g~~ 161 (216)
T PLN03110 83 RGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGL-SFLETSALEATN 161 (216)
T ss_pred CCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 99999999999876433322 223333333 36899999999998765543 1122 2333 789999999999
Q ss_pred HHHHHHHHHHhcCC
Q psy17089 151 IKNFLENILTIELP 164 (419)
Q Consensus 151 v~~l~~~i~~~~~~ 164 (419)
++++|+.+.+.+..
T Consensus 162 v~~lf~~l~~~i~~ 175 (216)
T PLN03110 162 VEKAFQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877654
No 292
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.82 E-value=4.9e-19 Score=157.99 Aligned_cols=156 Identities=21% Similarity=0.222 Sum_probs=113.1
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceee------e--c-----CCCCcccee------------------------eeEeeE
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVI------T--Y-----DTPGTTRDS------------------------IKSLFE 226 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~------~--~-----~~~~~t~~~------------------------~~~~~~ 226 (419)
||+++|+.++|||||+++|....... . . -..|.|... ....++
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999998421100 0 0 001221100 012234
Q ss_pred EeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHh--hcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEccc
Q psy17089 227 YNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL--EANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWD 304 (419)
Q Consensus 227 ~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~--~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~D 304 (419)
..+..+.++||||+ ++|. ..+...+. .+|++++|+|+..+...++.+++.++...++|+++|+||+|
T Consensus 81 ~~~~~i~liDtpG~----------~~~~-~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D 149 (224)
T cd04165 81 KSSKLVTFIDLAGH----------ERYL-KTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKID 149 (224)
T ss_pred eCCcEEEEEECCCc----------HHHH-HHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 45778999999998 3442 33334443 68999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHcC-------------------------CCCCCcEEEEeccCCCCHHHHHHHHHH
Q psy17089 305 SIIHNQRKIIKNNIKKKLN-------------------------FLSFAMFNFISAIKLNNINSFMESINH 350 (419)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~SA~~g~gv~~l~~~i~~ 350 (419)
+.+........+++.+.+. ....+|++.+||.+|.|+++|...|..
T Consensus 150 ~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 150 LAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 9877666666666665554 223459999999999999999887754
No 293
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.82 E-value=4.8e-19 Score=151.13 Aligned_cols=148 Identities=17% Similarity=0.186 Sum_probs=109.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
+||+++|.+|||||||+++|++.. +...+.+++.+........++ ..+.+|||||+. .+......++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~~ 69 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQE---------DYAAIRDNYH 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CccccCCcchhhEEEEEEECCEEEEEEEEECCChh---------hhhHHHHHHh
Confidence 589999999999999999999753 345555666665555566665 467899999987 4445566788
Q ss_pred HhCCEEEEEEeCCCCCC--HhHHHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLV--EQDKLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~--~~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
+.++++++|+|..++.+ ....++..+++. .++|+++|+||+|+...... ..+. ..+. +++++||++|.
T Consensus 70 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (164)
T cd04139 70 RSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGV-PYVETSAKTRQ 148 (164)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCC-eEEEeeCCCCC
Confidence 99999999999875322 223444444443 57899999999999763222 1222 3344 78999999999
Q ss_pred CHHHHHHHHHHhc
Q psy17089 150 GIKNFLENILTIE 162 (419)
Q Consensus 150 ~v~~l~~~i~~~~ 162 (419)
|++++++.+.+.+
T Consensus 149 gi~~l~~~l~~~~ 161 (164)
T cd04139 149 NVEKAFYDLVREI 161 (164)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998755
No 294
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.82 E-value=6.9e-20 Score=156.32 Aligned_cols=142 Identities=26% Similarity=0.307 Sum_probs=98.0
Q ss_pred CEEEEEEeCCCCCCHhHHHHHHH--HHhcCCCEEEEEeccCCCCCCcch---hHHhcCCCCeEEEee-------------
Q psy17089 84 DIIIFIVDGRQGLVEQDKLITNF--LRKSGQPIVLVINKSENINSSISL---DFYELGIGNPHIISA------------- 145 (419)
Q Consensus 84 d~il~v~d~~~~~~~~~~~~~~~--l~~~~~p~ilv~NK~Dl~~~~~~~---~~~~~~~~~~~~vSa------------- 145 (419)
|++++|+|++.+....+..+.+. +...++|+++|+||+|+....... +++......+...|+
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV 80 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence 78999999999888888888887 555679999999999997655542 222222212222222
Q ss_pred ------------ccCCCHHHHHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCC
Q psy17089 146 ------------LYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDT 213 (419)
Q Consensus 146 ------------~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~ 213 (419)
..+.|.+.+++.+.+.... ......++++++|.||+|||||+|+|++...+.+++.
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~------------~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~ 148 (172)
T cd04178 81 KVEAASADLLRSSVCFGADCLLKLLKNYSRN------------KDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGAT 148 (172)
T ss_pred ccchhhhhhhhhccccCHHHHHHHHHHHhhc------------cccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCC
Confidence 2222333333333221111 1113568999999999999999999999988899999
Q ss_pred CCccceeeeEeeEEeCeeEEEEeCCCC
Q psy17089 214 PGTTRDSIKSLFEYNNKKYILIDTAGI 240 (419)
Q Consensus 214 ~~~t~~~~~~~~~~~~~~~~liDtpG~ 240 (419)
||+|........ +.++.++||||+
T Consensus 149 pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 149 PGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred CCeEcceEEEEe---CCCEEEEECcCC
Confidence 999997655443 357999999995
No 295
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.82 E-value=5.5e-19 Score=152.09 Aligned_cols=152 Identities=19% Similarity=0.160 Sum_probs=107.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|++|||||||+|+|++... .....++.+.+.......+.+. .+.+|||||+. .+......++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~~~ 70 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQE---------RFQSLGVAFY 70 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CcCcCCccceEEEEEEEEECCEEEEEEEEeCCChH---------HHHhHHHHHh
Confidence 4899999999999999999998642 1223334445555556667765 45599999986 4555666788
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHh------cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeec
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK------SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISAL 146 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~------~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~ 146 (419)
+++|++++|+|+.++.+... .+...++.. .++|+++|+||+|+...... ..+. ..+..+++++||+
T Consensus 71 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 150 (172)
T cd01862 71 RGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAK 150 (172)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECC
Confidence 99999999999886543221 222222332 26899999999999853322 2222 3343589999999
Q ss_pred cCCCHHHHHHHHHHhcCC
Q psy17089 147 YGNGIKNFLENILTIELP 164 (419)
Q Consensus 147 ~~~~v~~l~~~i~~~~~~ 164 (419)
+|.|++++++.+.+.+.+
T Consensus 151 ~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 151 EAINVEQAFETIARKALE 168 (172)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999876554
No 296
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.82 E-value=2.6e-19 Score=160.08 Aligned_cols=153 Identities=20% Similarity=0.126 Sum_probs=106.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|++|||||||+++++... +.....+++..+.....+..++ ..+.+|||||++ ++......++
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~-f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 83 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE---------KFGGLRDGYY 83 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCC-CCCccCCccceeEEEEEEEECCeEEEEEEEECCCch---------hhhhhhHHHc
Confidence 599999999999999999998653 2122233333344444444443 578899999997 4445556678
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh--cCCCEEEEEeccCCCCCCcc---hhHHhcCCCCeEEEeeccCCCHHHH
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK--SGQPIVLVINKSENINSSIS---LDFYELGIGNPHIISALYGNGIKNF 154 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~---~~~~~~~~~~~~~vSa~~~~~v~~l 154 (419)
+++|++++|+|..+..+... ..|.+.+++ .+.|+++|+||+|+...... ..+......+++++||++|.|++++
T Consensus 84 ~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i~~~ 163 (219)
T PLN03071 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (219)
T ss_pred ccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCHHHH
Confidence 89999999999887543332 223333332 46899999999999654332 2222222237899999999999999
Q ss_pred HHHHHHhcCCc
Q psy17089 155 LENILTIELPY 165 (419)
Q Consensus 155 ~~~i~~~~~~~ 165 (419)
|.+|.+.+.+.
T Consensus 164 f~~l~~~~~~~ 174 (219)
T PLN03071 164 FLYLARKLAGD 174 (219)
T ss_pred HHHHHHHHHcC
Confidence 99999877654
No 297
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.82 E-value=3.9e-19 Score=158.04 Aligned_cols=147 Identities=19% Similarity=0.187 Sum_probs=103.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhC
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 83 (419)
||+++|.+|||||||+++|++... ....+++..+ .....+....+.+|||||++ .+......+++++
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f--~~~~~Tig~~--~~~~~~~~~~l~iwDt~G~e---------~~~~l~~~~~~~a 68 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRF--KDTVSTVGGA--FYLKQWGPYNISIWDTAGRE---------QFHGLGSMYCRGA 68 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC--CCCCCccceE--EEEEEeeEEEEEEEeCCCcc---------cchhhHHHHhccC
Confidence 799999999999999999997642 2233333333 23334556778999999997 3444556678999
Q ss_pred CEEEEEEeCCCCCCHhH--HHHHHHHHh--cCCCEEEEEeccCCCC-------------------CCcc-----hhHH-h
Q psy17089 84 DIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENIN-------------------SSIS-----LDFY-E 134 (419)
Q Consensus 84 d~il~v~d~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~Dl~~-------------------~~~~-----~~~~-~ 134 (419)
|++++|+|.++..+... .++..+.+. .+.|+++|+||+|+.. .+.+ ..+. .
T Consensus 69 d~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~ 148 (220)
T cd04126 69 AAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKR 148 (220)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHH
Confidence 99999999887544333 444444433 3579999999999975 2222 1222 2
Q ss_pred cC-------------CCCeEEEeeccCCCHHHHHHHHHHhcC
Q psy17089 135 LG-------------IGNPHIISALYGNGIKNFLENILTIEL 163 (419)
Q Consensus 135 ~~-------------~~~~~~vSa~~~~~v~~l~~~i~~~~~ 163 (419)
.+ ...++++||++|.|++++|..+.+.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 149 INKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred hCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 22 126899999999999999999987654
No 298
>KOG0088|consensus
Probab=99.82 E-value=1.3e-20 Score=149.89 Aligned_cols=160 Identities=18% Similarity=0.135 Sum_probs=114.1
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
-.+||+++|..-||||||+-++.... +......+....+....+...++ ++.||||+|| |+|...-.
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~Enk-Fn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQ----------ErfHALGP 80 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENK-FNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQ----------ERFHALGP 80 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhh-cchhhHHHHHHHHhhcccccccceeeeeeeeccch----------HhhhccCc
Confidence 45899999999999999999998543 33333333333344444555554 6778999999 77765544
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
-|++.++++++|+|+++..+++..+ |...++. ..+.++||+||+||..+... ..++ .+.++...+..++++|
T Consensus 81 -IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~V--t~qe-Ae~YAesvGA~y~eTS 156 (218)
T KOG0088|consen 81 -IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQV--TRQE-AEAYAESVGALYMETS 156 (218)
T ss_pred -eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhh--hHHH-HHHHHHhhchhheecc
Confidence 5899999999999999998888753 5555544 34778999999999543322 1122 2233334457899999
Q ss_pred ccCCCCHHHHHHHHHHHHhhc
Q psy17089 335 AIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~~~ 355 (419)
|+.+.|+.+||..+...+-+.
T Consensus 157 Ak~N~Gi~elFe~Lt~~MiE~ 177 (218)
T KOG0088|consen 157 AKDNVGISELFESLTAKMIEH 177 (218)
T ss_pred cccccCHHHHHHHHHHHHHHH
Confidence 999999999999998865543
No 299
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.82 E-value=4.8e-19 Score=152.88 Aligned_cols=145 Identities=20% Similarity=0.275 Sum_probs=104.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.+|+++|++|||||||+++|++... ....+ |.........+.+..+.+|||||+. ++......++.+
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~l~D~~G~~---------~~~~~~~~~~~~ 82 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEV--VHTSP--TIGSNVEEIVYKNIRFLMWDIGGQE---------SLRSSWNTYYTN 82 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCC--CCcCC--ccccceEEEEECCeEEEEEECCCCH---------HHHHHHHHHhhc
Confidence 6899999999999999999987542 22223 3333445677788899999999997 555666677899
Q ss_pred CCEEEEEEeCCCCCC--HhHHHHHHHHHh---cCCCEEEEEeccCCCCCCcchhHH-hcCC-------CCeEEEeeccCC
Q psy17089 83 SDIIIFIVDGRQGLV--EQDKLITNFLRK---SGQPIVLVINKSENINSSISLDFY-ELGI-------GNPHIISALYGN 149 (419)
Q Consensus 83 ~d~il~v~d~~~~~~--~~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~~~~-~~~~-------~~~~~vSa~~~~ 149 (419)
+|+++||+|+++... ....++.+.++. .++|+++++||+|+.......+.. .++. .+++++||++|.
T Consensus 83 ~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~ 162 (174)
T cd04153 83 TDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGE 162 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCC
Confidence 999999999886432 222344444443 358999999999987643221111 1111 147899999999
Q ss_pred CHHHHHHHHHH
Q psy17089 150 GIKNFLENILT 160 (419)
Q Consensus 150 ~v~~l~~~i~~ 160 (419)
|+++++++|.+
T Consensus 163 gi~e~~~~l~~ 173 (174)
T cd04153 163 GLPEGLDWIAS 173 (174)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 300
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.82 E-value=2.5e-19 Score=151.70 Aligned_cols=144 Identities=15% Similarity=0.189 Sum_probs=100.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.+|+++|++|||||||+|+|.|.... . + ....+.+.+. .+|||||+..... ++......++.+
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~~---~-----~--~~~~v~~~~~--~~iDtpG~~~~~~-----~~~~~~~~~~~~ 64 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYTL---A-----R--KTQAVEFNDK--GDIDTPGEYFSHP-----RWYHALITTLQD 64 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCcc---C-----c--cceEEEECCC--CcccCCccccCCH-----HHHHHHHHHHhc
Confidence 48999999999999999999875311 1 1 1122233332 2799999863331 233444456889
Q ss_pred CCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc--hhHH-hcCC-CCeEEEeeccCCCHHHHHHHH
Q psy17089 83 SDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS--LDFY-ELGI-GNPHIISALYGNGIKNFLENI 158 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~--~~~~-~~~~-~~~~~vSa~~~~~v~~l~~~i 158 (419)
+|++++|+|++...+....++.+. ..++|+++++||+|+...... .++. ..+. .+++++||++|.|++++++++
T Consensus 65 ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l 142 (158)
T PRK15467 65 VDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYL 142 (158)
T ss_pred CCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHH
Confidence 999999999987655554544443 236799999999998654322 2332 4444 389999999999999999999
Q ss_pred HHhcCCc
Q psy17089 159 LTIELPY 165 (419)
Q Consensus 159 ~~~~~~~ 165 (419)
.+.+...
T Consensus 143 ~~~~~~~ 149 (158)
T PRK15467 143 ASLTKQE 149 (158)
T ss_pred HHhchhh
Confidence 9877654
No 301
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.82 E-value=4.2e-19 Score=155.30 Aligned_cols=152 Identities=21% Similarity=0.225 Sum_probs=108.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
+||+++|++|||||||+++|++.... ....++.+.+.....+.+++. .+.+|||||+. .+.......+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~---------~~~~~~~~~~ 70 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFS-ESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQE---------RFRSLNNSYY 70 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH---------HHHhhHHHHc
Confidence 48999999999999999999976421 113344445555556666664 56799999986 5555667788
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.++|++++|+|..++.+... ..++..+.. .+.|+++|+||+|+.+.... ..+. ..+. +++++||++|.|
T Consensus 71 ~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~~~~~ 149 (188)
T cd04125 71 RGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNI-PFFETSAKQSIN 149 (188)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 99999999999876433222 223333332 25799999999999865443 1222 3345 799999999999
Q ss_pred HHHHHHHHHHhcCCc
Q psy17089 151 IKNFLENILTIELPY 165 (419)
Q Consensus 151 v~~l~~~i~~~~~~~ 165 (419)
++++|..+.+.+...
T Consensus 150 i~~~f~~l~~~~~~~ 164 (188)
T cd04125 150 VEEAFILLVKLIIKR 164 (188)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998876543
No 302
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.82 E-value=1.5e-19 Score=157.90 Aligned_cols=162 Identities=16% Similarity=0.106 Sum_probs=106.8
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
.||+++|.+|+|||||++++..... . ..+..+..+.....+..++. .+.+|||||+.... .... .
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~----------~~~~-~ 68 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEF-P-EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYE----------RLRP-L 68 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-C-cccCCcccceEEEEEEECCEEEEEEEEECCCChhcc----------ccch-h
Confidence 5899999999999999999985432 1 22222333333344455544 56789999984432 1111 3
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEEcccCCChhh--------HHHHHHHHHHHcCCCCCC
Q psy17089 261 SILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQ--------RKIIKNNIKKKLNFLSFA 328 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~ 328 (419)
++..+|++++++|+++..++++. .|+..+.. .+.|+++|+||+|+.+... .....+.........+.+
T Consensus 69 ~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (187)
T cd04129 69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAK 148 (187)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCc
Confidence 56789999999999987776665 35565554 3699999999999853210 000001111112223335
Q ss_pred cEEEEeccCCCCHHHHHHHHHHHHhhcCC
Q psy17089 329 MFNFISAIKLNNINSFMESINHVYDSSII 357 (419)
Q Consensus 329 ~~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 357 (419)
+++++||++|.|++++|+.+.+.+....+
T Consensus 149 ~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~ 177 (187)
T cd04129 149 KYMECSALTGEGVDDVFEAATRAALLVRK 177 (187)
T ss_pred EEEEccCCCCCCHHHHHHHHHHHHhcccC
Confidence 89999999999999999999987655443
No 303
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.82 E-value=5.6e-19 Score=151.92 Aligned_cols=150 Identities=16% Similarity=0.097 Sum_probs=106.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHH-HHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMT-KQTKQA 79 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~-~~~~~~ 79 (419)
.||+++|++|||||||+++|++.. ......++.+.+.....+.+++ ..+.+|||||++ ++. .....+
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~~ 72 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGR-FPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE---------RFRKSMVQHY 72 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCccccceeEEEEEEEEEECCeEEEEEEEeCCChH---------HHHHhhHHHh
Confidence 589999999999999999998754 2122333444455555667777 567899999986 333 234566
Q ss_pred HHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCCEEEEEeccCCCCCCcc-----hhHHhcCCCCeEEEeecc--
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFYELGIGNPHIISALY-- 147 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~-----~~~~~~~~~~~~~vSa~~-- 147 (419)
++++|++++|+|..++.+... ..+.+.+.. .+.|+++|+||+|+...+.. .++......+++++||++
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 152 (170)
T cd04115 73 YRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPS 152 (170)
T ss_pred hcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCc
Confidence 789999999999986543333 233333332 35899999999999766543 223322224789999998
Q ss_pred -CCCHHHHHHHHHHhc
Q psy17089 148 -GNGIKNFLENILTIE 162 (419)
Q Consensus 148 -~~~v~~l~~~i~~~~ 162 (419)
+.+++++|..+.+.+
T Consensus 153 ~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 153 ENDHVEAIFMTLAHKL 168 (170)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 899999999988654
No 304
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.82 E-value=1.2e-19 Score=161.09 Aligned_cols=141 Identities=32% Similarity=0.429 Sum_probs=108.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceec------------------------------CCCCCCccceEEEEEECCeEEE
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVA------------------------------NYPGLTRDRHYGEGYIGKKSFI 53 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~~~~~ 53 (419)
+|+|+|++|+|||||+++|+...+.+.. ...++|++.....+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999876544331 1257899988888999999999
Q ss_pred EEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCC-CEEEEEeccCCCCCCcc---
Q psy17089 54 IIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQ-PIVLVINKSENINSSIS--- 129 (419)
Q Consensus 54 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~-p~ilv~NK~Dl~~~~~~--- 129 (419)
+|||||+. ++...+..++..+|++++|+|+..+..........++...+. ++++|+||+|+......
T Consensus 81 liDTpG~~---------~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~ 151 (208)
T cd04166 81 IADTPGHE---------QYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFE 151 (208)
T ss_pred EEECCcHH---------HHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHH
Confidence 99999986 444555667899999999999998877777777777776665 47889999998753321
Q ss_pred ------hhHH-hcCC--CCeEEEeeccCCCHHH
Q psy17089 130 ------LDFY-ELGI--GNPHIISALYGNGIKN 153 (419)
Q Consensus 130 ------~~~~-~~~~--~~~~~vSa~~~~~v~~ 153 (419)
.++. .++. .+++++||++|.|+++
T Consensus 152 ~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 152 EIVADYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 1111 3343 2489999999999874
No 305
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.82 E-value=3.6e-19 Score=182.89 Aligned_cols=159 Identities=22% Similarity=0.270 Sum_probs=122.5
Q ss_pred ccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 179 SIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 179 ~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
..++..|+++|++|+|||||+++|.+... ..+..+|+|.+.....+.+++..+.||||||+..+. ...
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v-~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~----------~m~- 354 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNV-AAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT----------AMR- 354 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCc-cccccCceeeeccEEEEEECCEEEEEEECCCCccch----------hHH-
Confidence 35778999999999999999999987643 344567788877777788888999999999995543 222
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHH--c-CC-CCCCcEEEEe
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKK--L-NF-LSFAMFNFIS 334 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~--~-~~-~~~~~~~~~S 334 (419)
..++..+|++|+|+|++++...+....+..+...++|+|+|+||+|+...+ ...+...+... + .. ....+++++|
T Consensus 355 ~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~-~e~V~~eL~~~~~~~e~~g~~vp~vpvS 433 (787)
T PRK05306 355 ARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGAN-PDRVKQELSEYGLVPEEWGGDTIFVPVS 433 (787)
T ss_pred HhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccC-HHHHHHHHHHhcccHHHhCCCceEEEEe
Confidence 256788999999999999888888888888888999999999999996432 22222222211 0 01 1236899999
Q ss_pred ccCCCCHHHHHHHHHH
Q psy17089 335 AIKLNNINSFMESINH 350 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~ 350 (419)
|++|.|+++|++.|..
T Consensus 434 AktG~GI~eLle~I~~ 449 (787)
T PRK05306 434 AKTGEGIDELLEAILL 449 (787)
T ss_pred CCCCCCchHHHHhhhh
Confidence 9999999999998875
No 306
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.82 E-value=3.5e-19 Score=151.96 Aligned_cols=150 Identities=21% Similarity=0.145 Sum_probs=104.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|++|||||||+|+|++.... ....++...+.....+.+++ ..+.+|||||++ ++......++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~ 71 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFS-ENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE---------RYRSLAPMYY 71 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEeCCchH---------HHHHHHHHHh
Confidence 48999999999999999999986522 11223333333344555655 467799999986 4445555678
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
+++|++++|+|+.+..+... ..++..+.. .+.|+++++||+|+...... ..+. ..+. .++++||++|.|
T Consensus 72 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 150 (163)
T cd01860 72 RGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGL-LFFETSAKTGEN 150 (163)
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCC-EEEEEECCCCCC
Confidence 89999999999886432221 223333333 35789999999998754332 1222 3444 789999999999
Q ss_pred HHHHHHHHHHhcC
Q psy17089 151 IKNFLENILTIEL 163 (419)
Q Consensus 151 v~~l~~~i~~~~~ 163 (419)
++++++.+.+.++
T Consensus 151 v~~l~~~l~~~l~ 163 (163)
T cd01860 151 VNELFTEIAKKLP 163 (163)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999987653
No 307
>PLN03118 Rab family protein; Provisional
Probab=99.82 E-value=2.9e-19 Score=159.20 Aligned_cols=152 Identities=19% Similarity=0.139 Sum_probs=110.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+|+|++|||||||+++|++... ....++++.+.....+.+++ ..+.+|||||+. ++......++
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~---------~~~~~~~~~~ 83 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSV--EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQE---------RFRTLTSSYY 83 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC--CCcCCCceeEEEEEEEEECCEEEEEEEEECCCch---------hhHHHHHHHH
Confidence 5899999999999999999998642 22333444445455566665 467899999997 5555667788
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHh----cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYG 148 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~ 148 (419)
+++|++++|+|..+..+... ..+...+.. .+.|+++|+||+|+...... .++. ..+. .++++||+++
T Consensus 84 ~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~-~~~e~SAk~~ 162 (211)
T PLN03118 84 RNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGC-LFLECSAKTR 162 (211)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCC-EEEEEeCCCC
Confidence 99999999999886433333 223333332 35799999999999765443 1222 3343 6899999999
Q ss_pred CCHHHHHHHHHHhcCCcc
Q psy17089 149 NGIKNFLENILTIELPYK 166 (419)
Q Consensus 149 ~~v~~l~~~i~~~~~~~~ 166 (419)
.|++++++.|.+.+.+.+
T Consensus 163 ~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 163 ENVEQCFEELALKIMEVP 180 (211)
T ss_pred CCHHHHHHHHHHHHHhhh
Confidence 999999999998876654
No 308
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.82 E-value=5.3e-19 Score=154.95 Aligned_cols=146 Identities=22% Similarity=0.245 Sum_probs=105.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
++|+++|++|||||||+++|.+... .... .|.......+.+++..+.+|||||+. .+......++++
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~~~~~--~~~~--~T~~~~~~~i~~~~~~~~l~D~~G~~---------~~~~~~~~~~~~ 86 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKDDRL--AQHV--PTLHPTSEELTIGNIKFKTFDLGGHE---------QARRLWKDYFPE 86 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--cccC--CccCcceEEEEECCEEEEEEECCCCH---------HHHHHHHHHhcc
Confidence 6899999999999999999997642 2222 24444556778889999999999986 444556677899
Q ss_pred CCEEEEEEeCCCCCC--HhHHHHHHHHH---hcCCCEEEEEeccCCCCCCcc---hhHHhc----------------CCC
Q psy17089 83 SDIIIFIVDGRQGLV--EQDKLITNFLR---KSGQPIVLVINKSENINSSIS---LDFYEL----------------GIG 138 (419)
Q Consensus 83 ~d~il~v~d~~~~~~--~~~~~~~~~l~---~~~~p~ilv~NK~Dl~~~~~~---~~~~~~----------------~~~ 138 (419)
+|++++|+|..+..+ ....++...++ ..+.|+++|+||+|+...... .++... ...
T Consensus 87 ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (190)
T cd00879 87 VDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPI 166 (190)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeE
Confidence 999999999876422 22244444443 246899999999998653222 222211 112
Q ss_pred CeEEEeeccCCCHHHHHHHHHHh
Q psy17089 139 NPHIISALYGNGIKNFLENILTI 161 (419)
Q Consensus 139 ~~~~vSa~~~~~v~~l~~~i~~~ 161 (419)
.++++||++|.|++++|+++.+.
T Consensus 167 ~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 167 EVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EEEEeEecCCCChHHHHHHHHhh
Confidence 47999999999999999999864
No 309
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.82 E-value=8.2e-19 Score=149.38 Aligned_cols=148 Identities=21% Similarity=0.187 Sum_probs=103.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|++|||||||+|+|++.... ....+..+.+.....+.+++ ..+.+|||||+. .+.......+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~~ 70 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFD-PDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQE---------RFRTLTSSYY 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-cccCCcccceEEEEEEEECCEEEEEEEEECCCch---------hhhhhhHHHh
Confidence 38999999999999999999976422 22333344444444455555 467899999986 4444556677
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCCEEEEEeccCCCCCCcc----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
+++|++++|+|..+..+... ..+...+.. .+.|+++|+||+|+...... .++. ..+. +++++||++|.|
T Consensus 71 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 149 (161)
T cd01863 71 RGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNM-LFIETSAKTRDG 149 (161)
T ss_pred CCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCC-EEEEEecCCCCC
Confidence 89999999999876433322 223333332 46899999999999844433 2222 3344 689999999999
Q ss_pred HHHHHHHHHHh
Q psy17089 151 IKNFLENILTI 161 (419)
Q Consensus 151 v~~l~~~i~~~ 161 (419)
++++++.+.+.
T Consensus 150 i~~~~~~~~~~ 160 (161)
T cd01863 150 VQQAFEELVEK 160 (161)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 310
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.82 E-value=3.6e-19 Score=151.40 Aligned_cols=144 Identities=23% Similarity=0.340 Sum_probs=100.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEEC-CeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG-KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
+|+++|.+|||||||+++|.+... ....++.. .....+... +..+.+|||||+. .+......++.+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~--~~~~~t~~--~~~~~~~~~~~~~l~i~D~~G~~---------~~~~~~~~~~~~ 67 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAEL--VTTIPTVG--FNVEMLQLEKHLSLTVWDVGGQE---------KMRTVWKCYLEN 67 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCc--ccccCccC--cceEEEEeCCceEEEEEECCCCH---------hHHHHHHHHhcc
Confidence 589999999999999999998653 22333322 223344443 4688999999986 455556667889
Q ss_pred CCEEEEEEeCCCCC--CHhHHHHHHHHHh---cCCCEEEEEeccCCCCCCcchhH---Hh-cCC-----CCeEEEeeccC
Q psy17089 83 SDIIIFIVDGRQGL--VEQDKLITNFLRK---SGQPIVLVINKSENINSSISLDF---YE-LGI-----GNPHIISALYG 148 (419)
Q Consensus 83 ~d~il~v~d~~~~~--~~~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~~~---~~-~~~-----~~~~~vSa~~~ 148 (419)
+|++++|+|+.+.. .....++.+.++. .+.|+++|+||+|+.......+. .. ... .+++++||++|
T Consensus 68 ~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~ 147 (160)
T cd04156 68 TDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTG 147 (160)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccC
Confidence 99999999988753 2333445555443 47899999999998653322111 11 111 14788999999
Q ss_pred CCHHHHHHHHHH
Q psy17089 149 NGIKNFLENILT 160 (419)
Q Consensus 149 ~~v~~l~~~i~~ 160 (419)
.|+++++++|.+
T Consensus 148 ~gv~~~~~~i~~ 159 (160)
T cd04156 148 EGLAEAFRKLAS 159 (160)
T ss_pred CChHHHHHHHhc
Confidence 999999999864
No 311
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.82 E-value=2.8e-19 Score=153.01 Aligned_cols=148 Identities=21% Similarity=0.264 Sum_probs=104.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
||+++|++|||||||+++++... +...+++++.........+++. .+.+|||||+.... ......+++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~~ 70 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQAD--------TEQLERSIR 70 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--cccccCCChHHhceEEEEECCEEEEEEEEECCCCcccc--------cchHHHHHH
Confidence 68999999999999999998743 3445555554444555666665 46799999987311 122345678
Q ss_pred hCCEEEEEEeCCCCCCHhH-HHHHHHHHh-----cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 82 ESDIIIFIVDGRQGLVEQD-KLITNFLRK-----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~~-~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
.+|++++|+|..++.+... ..+..++.. .+.|+++|+||+|+...+.. ..+. ..+. +++++||++|.
T Consensus 71 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~ 149 (165)
T cd04146 71 WADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGC-LFFEVSAAEDY 149 (165)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCC-EEEEeCCCCCc
Confidence 9999999999987533332 233334433 36899999999998655433 1222 3443 78999999995
Q ss_pred -CHHHHHHHHHHhc
Q psy17089 150 -GIKNFLENILTIE 162 (419)
Q Consensus 150 -~v~~l~~~i~~~~ 162 (419)
|++++|..+.+.+
T Consensus 150 ~~v~~~f~~l~~~~ 163 (165)
T cd04146 150 DGVHSVFHELCREV 163 (165)
T ss_pred hhHHHHHHHHHHHH
Confidence 9999999998754
No 312
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.82 E-value=7e-19 Score=177.75 Aligned_cols=161 Identities=25% Similarity=0.282 Sum_probs=117.6
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceee--------ec------CCCCccceeeeEeeEEe---C--eeEEEEeCCCCCC
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVI--------TY------DTPGTTRDSIKSLFEYN---N--KKYILIDTAGIRR 242 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~--------~~------~~~~~t~~~~~~~~~~~---~--~~~~liDtpG~~~ 242 (419)
..+|+++|++++|||||+++|+...... .. ...|+|.......+.+. + ..+.||||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4689999999999999999998642111 11 12377776655555553 3 5788999999943
Q ss_pred CCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHc
Q psy17089 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKL 322 (419)
Q Consensus 243 ~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~ 322 (419)
|. .....+++.||++++|+|++++.+.++...+..+.+.++|+++|+||+|+.... .....+++.+.+
T Consensus 83 ----------F~-~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~-~~~~~~el~~~l 150 (595)
T TIGR01393 83 ----------FS-YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSAD-PERVKKEIEEVI 150 (595)
T ss_pred ----------HH-HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccC-HHHHHHHHHHHh
Confidence 32 233467889999999999999988888776666667889999999999986432 222334444444
Q ss_pred CCCCCCcEEEEeccCCCCHHHHHHHHHHHHhhc
Q psy17089 323 NFLSFAMFNFISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 323 ~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
. ....+++++||++|.|+++|++.+.+.++..
T Consensus 151 g-~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 151 G-LDASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred C-CCcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 3 2223589999999999999999999877643
No 313
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.82 E-value=2e-18 Score=147.81 Aligned_cols=164 Identities=27% Similarity=0.365 Sum_probs=115.2
Q ss_pred EEEEEeCCCCchhHHHHHHhC-CceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHH
Q psy17089 184 KVAIVGKPNVGKSTLINSLLG-ENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (419)
.|+++|.+|+|||||+|.+.+ ......+..+++|..... +.. +..+.+|||||+..........+.+.. ....++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~~-~~~~~~ 76 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNV-NDKFRLVDLPGYGYAKVSKEVKEKWGK-LIEEYL 76 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEc-cCeEEEecCCCccccccCHHHHHHHHH-HHHHHH
Confidence 389999999999999999994 333345556666554322 222 238999999998554221112233321 112233
Q ss_pred ---hhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcC-CCCCCcEEEEeccCC
Q psy17089 263 ---LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLN-FLSFAMFNFISAIKL 338 (419)
Q Consensus 263 ---~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~SA~~g 338 (419)
...+++++++|.+...+..+.++.+++...+.|+++|+||+|+............+...+. .....+++++||+++
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~ 156 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKG 156 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCC
Confidence 3467899999999877777778888888888999999999999766554444444444443 345578999999999
Q ss_pred CCHHHHHHHHHHH
Q psy17089 339 NNINSFMESINHV 351 (419)
Q Consensus 339 ~gv~~l~~~i~~~ 351 (419)
.|++++++.+.+.
T Consensus 157 ~~~~~l~~~l~~~ 169 (170)
T cd01876 157 QGIDELRALIEKW 169 (170)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998764
No 314
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.82 E-value=4.6e-19 Score=159.30 Aligned_cols=158 Identities=29% Similarity=0.391 Sum_probs=123.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
.|.|+|.|.||||||||++++++.+.. +.+||+||...+.+.+..++.++++|||||+.+.. .+.++.+..+...+++
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpE-vA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRP-l~ErN~IE~qAi~AL~ 245 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPE-VAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRP-LEERNEIERQAILALR 245 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCc-cCCCCccccceeEeeeecCCceEEEecCCcccCCC-hHHhcHHHHHHHHHHH
Confidence 479999999999999999999988654 88999999999999999999999999999998665 3445566677766666
Q ss_pred hC-CEEEEEEeCCCC--CCH-hHHHHHHHHHh-cCCCEEEEEeccCCCCCCcc--h--hHHhcCCCCeEEEeeccCCCHH
Q psy17089 82 ES-DIIIFIVDGRQG--LVE-QDKLITNFLRK-SGQPIVLVINKSENINSSIS--L--DFYELGIGNPHIISALYGNGIK 152 (419)
Q Consensus 82 ~~-d~il~v~d~~~~--~~~-~~~~~~~~l~~-~~~p~ilv~NK~Dl~~~~~~--~--~~~~~~~~~~~~vSa~~~~~v~ 152 (419)
+. ++|+|++|.+.. ++- ....+++.++. .+.|+++|+||+|....+.. . .....+......+|+..+.+++
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 325 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCGLD 325 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHHHHHHHHHhhccccccceeeeehhhHH
Confidence 54 689999997743 332 23555555554 57899999999999866665 2 2224455456788999999998
Q ss_pred HHHHHHHHh
Q psy17089 153 NFLENILTI 161 (419)
Q Consensus 153 ~l~~~i~~~ 161 (419)
.+...+...
T Consensus 326 ~~~~~v~~~ 334 (346)
T COG1084 326 KLREEVRKT 334 (346)
T ss_pred HHHHHHHHH
Confidence 888777765
No 315
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.82 E-value=6e-19 Score=151.51 Aligned_cols=149 Identities=17% Similarity=0.083 Sum_probs=107.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
++|+++|++|||||||+++|.+.. ......++++.+.....+.+++. .+.+|||||+. .+......++
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~~~ 77 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE---------RFRSITQSYY 77 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH---------HHHHHHHHHh
Confidence 689999999999999999998653 11223344555666667777774 46789999986 4555556788
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHHhcCCCCeEEEeeccCCCH
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFYELGIGNPHIISALYGNGI 151 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~~~~~~~~~~vSa~~~~~v 151 (419)
..+|++++|+|..++.+... ..+...++. .+.|+++|+||+|+...+.. ..+.......++++||++|.|+
T Consensus 78 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv 157 (169)
T cd04114 78 RSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNV 157 (169)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCH
Confidence 99999999999876433221 223333332 46899999999999765543 2222322247899999999999
Q ss_pred HHHHHHHHHh
Q psy17089 152 KNFLENILTI 161 (419)
Q Consensus 152 ~~l~~~i~~~ 161 (419)
+++++.|.+.
T Consensus 158 ~~l~~~i~~~ 167 (169)
T cd04114 158 EKLFLDLACR 167 (169)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 316
>CHL00071 tufA elongation factor Tu
Probab=99.82 E-value=5.2e-19 Score=172.33 Aligned_cols=151 Identities=16% Similarity=0.196 Sum_probs=117.3
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCce---------------eeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCC
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENR---------------VITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~---------------~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 244 (419)
.+.++|+++|++|+|||||+++|++... .......|+|.+.....+..++.++.++||||+
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh---- 85 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGH---- 85 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCCh----
Confidence 3668999999999999999999996411 111233688888877777777889999999998
Q ss_pred cchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCc-EEEEEEcccCCChhh-HHHHHHHHHHHc
Q psy17089 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRS-LIVCVNKWDSIIHNQ-RKIIKNNIKKKL 322 (419)
Q Consensus 245 ~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~-~~~~~~~~~~~~ 322 (419)
+.|. ..+...+..+|++++|+|+..+...++.+++..+...++| +|+|+||+|+.+... .+...+++...+
T Consensus 86 ------~~~~-~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l 158 (409)
T CHL00071 86 ------ADYV-KNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELL 158 (409)
T ss_pred ------HHHH-HHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 2332 4445778899999999999999989999999999999999 778999999986443 233445566665
Q ss_pred CCCC----CCcEEEEeccCCCCH
Q psy17089 323 NFLS----FAMFNFISAIKLNNI 341 (419)
Q Consensus 323 ~~~~----~~~~~~~SA~~g~gv 341 (419)
.... ..+++++||.+|.|+
T Consensus 159 ~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 159 SKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHhCCCCCcceEEEcchhhcccc
Confidence 5443 378999999999764
No 317
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.82 E-value=7.2e-19 Score=158.24 Aligned_cols=154 Identities=25% Similarity=0.229 Sum_probs=112.7
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHh
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~ 263 (419)
+|+++|.+|+|||||+|+|++.. ..++.++++|.+...+.+.+++..+.+|||||+.+...... ......+.+++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~----~~~~~~l~~~~ 76 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK----GRGRQVIAVAR 76 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEECCeEEEEEECCCcccccccch----hHHHHHHHhhc
Confidence 78999999999999999999875 45678899999888888888999999999999865431110 11233456889
Q ss_pred hcCEEEEEecCCCCCCHHHHHHHHHHH--------------------------------------------H--------
Q psy17089 264 EANVVILLLDAQQNISAQDINIANFIY--------------------------------------------E-------- 291 (419)
Q Consensus 264 ~ad~~i~v~d~~~~~~~~~~~~~~~~~--------------------------------------------~-------- 291 (419)
.+|++++|+|+++.....+ .+.+.+. +
T Consensus 77 ~ad~il~V~D~t~~~~~~~-~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v 155 (233)
T cd01896 77 TADLILMVLDATKPEGHRE-ILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADV 155 (233)
T ss_pred cCCEEEEEecCCcchhHHH-HHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEE
Confidence 9999999999986532111 1111111 0
Q ss_pred -------------------cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHHHHHHHHHHHH
Q psy17089 292 -------------------SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVY 352 (419)
Q Consensus 292 -------------------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 352 (419)
..+|+++|+||+|+.+...... +.. ..+++++||++|.|++++++.+.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~--------~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 156 LIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDL--------LAR--QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred EEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHH--------Hhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 1268999999999976544331 111 24689999999999999999998765
Q ss_pred h
Q psy17089 353 D 353 (419)
Q Consensus 353 ~ 353 (419)
.
T Consensus 226 ~ 226 (233)
T cd01896 226 G 226 (233)
T ss_pred C
Confidence 3
No 318
>PRK12736 elongation factor Tu; Reviewed
Probab=99.82 E-value=5.2e-19 Score=171.48 Aligned_cols=162 Identities=17% Similarity=0.216 Sum_probs=120.0
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCce------e---------eecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCC
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENR------V---------ITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~------~---------~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 244 (419)
.+.++|+++|++++|||||+++|++... . ......|+|.+.....+..++..+.+|||||+
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh---- 85 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGH---- 85 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCH----
Confidence 3668999999999999999999986310 0 01125688888877777667789999999998
Q ss_pred cchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCc-EEEEEEcccCCChhhH-HHHHHHHHHHc
Q psy17089 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRS-LIVCVNKWDSIIHNQR-KIIKNNIKKKL 322 (419)
Q Consensus 245 ~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~~-~~~~~~~~~~~ 322 (419)
++|. ..+...+..+|++++|+|++.+...++.+++..+...++| +|+|+||+|+.+.... +...+++...+
T Consensus 86 ------~~f~-~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l 158 (394)
T PRK12736 86 ------ADYV-KNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELL 158 (394)
T ss_pred ------HHHH-HHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHH
Confidence 4443 4445677889999999999999888999999999989999 6789999999754333 22344555554
Q ss_pred CCCC----CCcEEEEeccCCC--------CHHHHHHHHHHHH
Q psy17089 323 NFLS----FAMFNFISAIKLN--------NINSFMESINHVY 352 (419)
Q Consensus 323 ~~~~----~~~~~~~SA~~g~--------gv~~l~~~i~~~~ 352 (419)
.... ..+++++||++|. ++++|++.+.+.+
T Consensus 159 ~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 159 SEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred HHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 4333 3689999999983 3455555555443
No 319
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.82 E-value=6.3e-19 Score=149.64 Aligned_cols=144 Identities=22% Similarity=0.276 Sum_probs=103.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhC
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 83 (419)
||+++|.+|||||||++++++... .... .|.........+.+..+.+|||||+. .+......++..+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~~~~ 67 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--VTTI--PTIGFNVETVEYKNVSFTVWDVGGQD---------KIRPLWKHYYENT 67 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--CCCC--CCcCcceEEEEECCEEEEEEECCCCh---------hhHHHHHHHhccC
Confidence 689999999999999999998752 2222 23333444566778899999999987 4444566678899
Q ss_pred CEEEEEEeCCCCC--CHhHHHHHHHHH---hcCCCEEEEEeccCCCCCCcc---hhHHhc-----CCCCeEEEeeccCCC
Q psy17089 84 DIIIFIVDGRQGL--VEQDKLITNFLR---KSGQPIVLVINKSENINSSIS---LDFYEL-----GIGNPHIISALYGNG 150 (419)
Q Consensus 84 d~il~v~d~~~~~--~~~~~~~~~~l~---~~~~p~ilv~NK~Dl~~~~~~---~~~~~~-----~~~~~~~vSa~~~~~ 150 (419)
|++++|+|+.++. .....++...++ ..+.|+++|+||+|+...... .+.... ...+++++||++|.|
T Consensus 68 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd00878 68 NGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDG 147 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCC
Confidence 9999999998642 222233444433 247899999999999875533 122111 122689999999999
Q ss_pred HHHHHHHHHH
Q psy17089 151 IKNFLENILT 160 (419)
Q Consensus 151 v~~l~~~i~~ 160 (419)
+++++++|..
T Consensus 148 v~~~~~~l~~ 157 (158)
T cd00878 148 LDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHhh
Confidence 9999999874
No 320
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.82 E-value=5.7e-19 Score=179.74 Aligned_cols=160 Identities=26% Similarity=0.334 Sum_probs=119.4
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEE----eCeeEEEEeCCCCCCCCcchHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY----NNKKYILIDTAGIRRRNKTFEVIEKFSV 255 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~liDtpG~~~~~~~~~~~e~~~~ 255 (419)
.+++.|+++|++|+|||||+++|.+... .....+|+|.+.....+.+ .+..+.||||||+ +.|..
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~-~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh----------e~F~~ 310 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQI-AQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH----------EAFSS 310 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccC-ccccCCccccccceEEEEEEecCCceEEEEEECCcH----------HHHHH
Confidence 4678999999999999999999987643 3344566776554444433 2478999999998 55543
Q ss_pred HHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHH--c-CC-CCCCcEE
Q psy17089 256 IKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKK--L-NF-LSFAMFN 331 (419)
Q Consensus 256 ~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~--~-~~-~~~~~~~ 331 (419)
.+ ..++..+|++++|+|++++...+..+.+..+...++|+|+|+||+|+.... .......+... + .. ...++++
T Consensus 311 mr-~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g~~vpvv 388 (742)
T CHL00189 311 MR-SRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANAN-TERIKQQLAKYNLIPEKWGGDTPMI 388 (742)
T ss_pred HH-HHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccC-HHHHHHHHHHhccchHhhCCCceEE
Confidence 33 367889999999999999888888888888888899999999999996532 12222222211 0 11 1246899
Q ss_pred EEeccCCCCHHHHHHHHHHHH
Q psy17089 332 FISAIKLNNINSFMESINHVY 352 (419)
Q Consensus 332 ~~SA~~g~gv~~l~~~i~~~~ 352 (419)
++||++|.|+++|++.+....
T Consensus 389 ~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 389 PISASQGTNIDKLLETILLLA 409 (742)
T ss_pred EEECCCCCCHHHHHHhhhhhh
Confidence 999999999999999987764
No 321
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.82 E-value=3.6e-19 Score=174.88 Aligned_cols=160 Identities=26% Similarity=0.360 Sum_probs=127.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
+.+|+++|+||||||||+|+|+|.+ ..++++||+|.+.+.+.....|+.+.++|+||.......+..+...+.+.. =.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll-~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLL-EG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHh-cC
Confidence 4579999999999999999999984 569999999999999999999999999999998765433333333322222 24
Q ss_pred hCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc---hhHH--hcCCCCeEEEeeccCCCHHHHHH
Q psy17089 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFY--ELGIGNPHIISALYGNGIKNFLE 156 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~---~~~~--~~~~~~~~~vSa~~~~~v~~l~~ 156 (419)
.+|+++-|+|+++ .+.+..+.-.+.+.++|+++++|++|..+++-. .+.. .+|. +++++||+.|+|++++++
T Consensus 81 ~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv-PVv~tvA~~g~G~~~l~~ 157 (653)
T COG0370 81 KPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLGV-PVVPTVAKRGEGLEELKR 157 (653)
T ss_pred CCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhCC-CEEEEEeecCCCHHHHHH
Confidence 6799999999986 445555555566789999999999999888765 2222 5677 999999999999999999
Q ss_pred HHHHhcCCcc
Q psy17089 157 NILTIELPYK 166 (419)
Q Consensus 157 ~i~~~~~~~~ 166 (419)
++.+..+++.
T Consensus 158 ~i~~~~~~~~ 167 (653)
T COG0370 158 AIIELAESKT 167 (653)
T ss_pred HHHHhccccc
Confidence 9987655543
No 322
>COG2262 HflX GTPases [General function prediction only]
Probab=99.82 E-value=4.8e-19 Score=164.08 Aligned_cols=161 Identities=30% Similarity=0.431 Sum_probs=130.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEEC-CeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG-KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
|.|.++|.+|+|||||+|+|++.. ..+.+..+.|.|+..+.+.+. |+.+.+-||-|+...-+..+...| ..++....
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~-~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AF-ksTLEE~~ 270 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGAD-VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAF-KSTLEEVK 270 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccC-eeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHH-HHHHHHhh
Confidence 789999999999999999999764 457788899999999999987 699999999999988777777777 46777899
Q ss_pred hCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcchhHHhcCCCCeEEEeeccCCCHHHHHHH
Q psy17089 82 ESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLEN 157 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~vSa~~~~~v~~l~~~ 157 (419)
+||++++|+|++++..... ....+.|.+ ..+|+++|.||+|+............+....+++||++|.|++.|++.
T Consensus 271 ~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~~~~v~iSA~~~~gl~~L~~~ 350 (411)
T COG2262 271 EADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERGSPNPVFISAKTGEGLDLLRER 350 (411)
T ss_pred cCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhcCCCeEEEEeccCcCHHHHHHH
Confidence 9999999999998633333 444455554 567999999999988766642222222226899999999999999999
Q ss_pred HHHhcCCc
Q psy17089 158 ILTIELPY 165 (419)
Q Consensus 158 i~~~~~~~ 165 (419)
|...++..
T Consensus 351 i~~~l~~~ 358 (411)
T COG2262 351 IIELLSGL 358 (411)
T ss_pred HHHHhhhc
Confidence 99887754
No 323
>KOG0093|consensus
Probab=99.82 E-value=3.5e-19 Score=140.08 Aligned_cols=151 Identities=19% Similarity=0.180 Sum_probs=116.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
++|+.|+|++.||||||+-+.++.. +...-+.++..+.+...+.-.. ..+++|||+|++ +++..+..+
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddS-Ft~afvsTvGidFKvKTvyr~~kRiklQiwDTagqE---------ryrtiTTay 90 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDS-FTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQE---------RYRTITTAY 90 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccc-cccceeeeeeeeEEEeEeeecccEEEEEEEecccch---------hhhHHHHHH
Confidence 4699999999999999999999863 2233445566777666555444 367799999998 777888899
Q ss_pred HHhCCEEEEEEeCCCCCCHhHHHHHHHHHh------cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeecc
Q psy17089 80 IIESDIIIFIVDGRQGLVEQDKLITNFLRK------SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALY 147 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~~~~~~~l~~------~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~ 147 (419)
+++++++++++|.++..+ ...+..|... -+.|+|+|+||||+...+.+ ..+. .+|+ ++|++||+.
T Consensus 91 yRgamgfiLmyDitNeeS--f~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf-efFEtSaK~ 167 (193)
T KOG0093|consen 91 YRGAMGFILMYDITNEES--FNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGF-EFFETSAKE 167 (193)
T ss_pred hhccceEEEEEecCCHHH--HHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhCh-HHhhhcccc
Confidence 999999999999886322 2223333322 47899999999999888776 2333 6777 899999999
Q ss_pred CCCHHHHHHHHHHhcCCc
Q psy17089 148 GNGIKNFLENILTIELPY 165 (419)
Q Consensus 148 ~~~v~~l~~~i~~~~~~~ 165 (419)
+-|++++|+.+...+.+.
T Consensus 168 NinVk~~Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 168 NINVKQVFERLVDIICDK 185 (193)
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 999999999998776654
No 324
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.82 E-value=6.9e-19 Score=154.62 Aligned_cols=150 Identities=21% Similarity=0.229 Sum_probs=104.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCC-ccceEEEEEECCeE--EEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLT-RDRHYGEGYIGKKS--FIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
||+|+|++|||||||+++|++.. .....+.++. .+.....+.+++.. +.+|||||+. ++......++
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~---------~~~~~~~~~~ 71 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHR-FLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE---------RYEAMSRIYY 71 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-cCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCch---------hhhhhhHhhc
Confidence 79999999999999999999764 2222333333 23334456777754 4599999986 3334445567
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh--cCCCEEEEEeccCCCCCCc----c-----hhHH-hcCCCCeEEEeecc
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK--SGQPIVLVINKSENINSSI----S-----LDFY-ELGIGNPHIISALY 147 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~----~-----~~~~-~~~~~~~~~vSa~~ 147 (419)
.++|++++|+|..+..+... ..+++.++. .+.|+++|+||+|+..... . .++. ..+. +++++||++
T Consensus 72 ~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~ 150 (193)
T cd04118 72 RGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKA-QHFETSSKT 150 (193)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 89999999999876433322 234444443 2689999999999865321 1 1222 2233 689999999
Q ss_pred CCCHHHHHHHHHHhcCC
Q psy17089 148 GNGIKNFLENILTIELP 164 (419)
Q Consensus 148 ~~~v~~l~~~i~~~~~~ 164 (419)
|.|++++++.+.+.+..
T Consensus 151 ~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 151 GQNVDELFQKVAEDFVS 167 (193)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999977643
No 325
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.81 E-value=4.6e-19 Score=154.91 Aligned_cols=152 Identities=15% Similarity=0.109 Sum_probs=106.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEEC-C--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG-K--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
||+++|++|||||||+++|++.. +...+.+++.+.....+... + ..+.+|||||++ ++......++
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~--~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 70 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGK--FPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQE---------EYDRLRPLSY 70 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCc--CCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCch---------hHHHHHHHhC
Confidence 79999999999999999999754 23333333333333344444 3 367899999987 4445555678
Q ss_pred HhCCEEEEEEeCCCCCCHhHH--HHHHHHHh--cCCCEEEEEeccCCCCCCc----c-----hhHH-hcCCCCeEEEeec
Q psy17089 81 IESDIIIFIVDGRQGLVEQDK--LITNFLRK--SGQPIVLVINKSENINSSI----S-----LDFY-ELGIGNPHIISAL 146 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~~--~~~~~l~~--~~~p~ilv~NK~Dl~~~~~----~-----~~~~-~~~~~~~~~vSa~ 146 (419)
.++|++++|+|.++..+.... .+...+.. .+.|+++|+||+|+..... . .++. ..+..+++++||+
T Consensus 71 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 150 (187)
T cd04132 71 PDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAK 150 (187)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCC
Confidence 899999999998865443331 23333332 3689999999999866431 1 2222 3445478999999
Q ss_pred cCCCHHHHHHHHHHhcCCcc
Q psy17089 147 YGNGIKNFLENILTIELPYK 166 (419)
Q Consensus 147 ~~~~v~~l~~~i~~~~~~~~ 166 (419)
+|.|++++|..+.+.+....
T Consensus 151 ~~~~v~~~f~~l~~~~~~~~ 170 (187)
T cd04132 151 TMENVEEVFDTAIEEALKKE 170 (187)
T ss_pred CCCCHHHHHHHHHHHHHhhh
Confidence 99999999999998776543
No 326
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.81 E-value=3.5e-19 Score=153.74 Aligned_cols=147 Identities=18% Similarity=0.222 Sum_probs=103.1
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 5 i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
|+|+|++|||||||+++|++.. +...+..+..+.....+.+++. .+.+|||||++ ++.......+.+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~~~~ 69 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA--FPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQE---------DYDRLRPLSYPD 69 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC--CCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCc---------ccchhchhhcCC
Confidence 6899999999999999999854 2333333333434445566665 47799999987 333344556789
Q ss_pred CCEEEEEEeCCCCCCHhH--HHHHHHHHh--cCCCEEEEEeccCCCCCCc------------c-----hhHH-hcCCCCe
Q psy17089 83 SDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINSSI------------S-----LDFY-ELGIGNP 140 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~------------~-----~~~~-~~~~~~~ 140 (419)
+|++++|+|.++..+... ..+...+.. .+.|+++|+||+|+..... . .++. ..+...+
T Consensus 70 ~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 149 (174)
T smart00174 70 TDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKY 149 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEE
Confidence 999999999886533332 223444433 4789999999999975322 1 1122 3444478
Q ss_pred EEEeeccCCCHHHHHHHHHHhc
Q psy17089 141 HIISALYGNGIKNFLENILTIE 162 (419)
Q Consensus 141 ~~vSa~~~~~v~~l~~~i~~~~ 162 (419)
+++||++|.|++++|+.+.+.+
T Consensus 150 ~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 150 LECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred EEecCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998754
No 327
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.81 E-value=7.4e-19 Score=150.85 Aligned_cols=149 Identities=17% Similarity=0.172 Sum_probs=105.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
+||+++|.+|||||||+++|++.. +...+.+++.+.......+++ ..+.+|||||+. ++......++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~~ 70 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNV--FIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTE---------QFTAMRELYI 70 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcchheEEEEEEECCEEEEEEEEeCCCcc---------cchhhhHHHH
Confidence 489999999999999999999754 334444444444445566666 467799999987 4445566678
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHH----hcCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLR----KSGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~----~~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
.+++++++|+|..++.+... ..+...+. ..+.|+++++||+|+...+.. ..+. ..+..+++++||+++.
T Consensus 71 ~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 150 (168)
T cd04177 71 KSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRT 150 (168)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCC
Confidence 89999999999876432222 22223232 247899999999999765543 1121 2332468999999999
Q ss_pred CHHHHHHHHHHhc
Q psy17089 150 GIKNFLENILTIE 162 (419)
Q Consensus 150 ~v~~l~~~i~~~~ 162 (419)
|++++|+++.+.+
T Consensus 151 ~i~~~f~~i~~~~ 163 (168)
T cd04177 151 NVDEVFIDLVRQI 163 (168)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998754
No 328
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.81 E-value=6.7e-19 Score=141.31 Aligned_cols=116 Identities=41% Similarity=0.649 Sum_probs=95.7
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHh
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~ 263 (419)
+|+++|.+|+|||||+|+|++.....+++.+++|.......+.+++..+.++||||+.+........+ ........+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~--~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGK--EIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHH--HHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHH--HHHHHHHHHH
Confidence 68999999999999999999977778999999999997777888899999999999977653221111 2234556778
Q ss_pred hcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEc
Q psy17089 264 EANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302 (419)
Q Consensus 264 ~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK 302 (419)
.+|++++|+|+.++....+.++++++. .++|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 999999999988866666778888886 89999999998
No 329
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.81 E-value=4.3e-19 Score=155.28 Aligned_cols=151 Identities=17% Similarity=0.206 Sum_probs=104.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|++|||||||+++|.+.. +...+.++..+.....+..++ ..+.+|||||++ ++......++
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~--~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~---------~~~~l~~~~~ 69 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGY--FPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQE---------EFDRLRSLSY 69 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC--CCCccCCcceeeeEEEEEECCEEEEEEEEECCCCh---------hccccccccc
Confidence 489999999999999999999754 233332222222333445555 467899999997 3333444567
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHh--cCCCEEEEEeccCCCCCCcc-----------------hhHH-hcCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINSSIS-----------------LDFY-ELGIG 138 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~-----------------~~~~-~~~~~ 138 (419)
.++|++++|+|..+..+... ..++..+.. .+.|+++|+||+|+...... .++. ..+..
T Consensus 70 ~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 149 (189)
T cd04134 70 ADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINAL 149 (189)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCC
Confidence 89999999999876544332 223444443 37899999999999765421 1111 22333
Q ss_pred CeEEEeeccCCCHHHHHHHHHHhcCC
Q psy17089 139 NPHIISALYGNGIKNFLENILTIELP 164 (419)
Q Consensus 139 ~~~~vSa~~~~~v~~l~~~i~~~~~~ 164 (419)
.++++||++|.|++++|..+.+.+..
T Consensus 150 ~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 150 RYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred EEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 68999999999999999999987654
No 330
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.81 E-value=1.5e-18 Score=147.66 Aligned_cols=149 Identities=21% Similarity=0.197 Sum_probs=104.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|.+|||||||+|+|++.... ....++++.+.......+.+. .+.+|||||+. .+......++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~~~ 70 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFN-EKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE---------RYHALGPIYY 70 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCcCCccceeEEEEEEEECCEEEEEEEEECCchH---------HHHHhhHHHh
Confidence 38999999999999999999976432 122233444444445555554 57799999986 4455566677
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.++|++++|+|..++.+... ..+.+.++. .++|+++|+||+|+...... .++. ..+. .++++||+++.|
T Consensus 71 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~g 149 (162)
T cd04123 71 RDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGA-KHFETSAKTGKG 149 (162)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 89999999999876543322 222333332 26899999999999865443 1222 2333 689999999999
Q ss_pred HHHHHHHHHHhc
Q psy17089 151 IKNFLENILTIE 162 (419)
Q Consensus 151 v~~l~~~i~~~~ 162 (419)
++++++.+.+.+
T Consensus 150 i~~~~~~l~~~~ 161 (162)
T cd04123 150 IEELFLSLAKRM 161 (162)
T ss_pred HHHHHHHHHHHh
Confidence 999999998653
No 331
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.81 E-value=6.1e-19 Score=156.81 Aligned_cols=153 Identities=20% Similarity=0.155 Sum_probs=108.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEEC-C--eEEEEEEcCCCCCcchhhHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG-K--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQ 78 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 78 (419)
..||+++|++|||||||+++|++.... ....++++.+.....+.+. + ..+.+|||||++ .+......
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~-~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~ 71 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFA-EVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE---------RFRSITRS 71 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCceeceEEEEEEEEECCCCEEEEEEEeCCcch---------hHHHHHHH
Confidence 368999999999999999999976422 2223455556555556553 3 467899999987 55556667
Q ss_pred HHHhCCEEEEEEeCCCCCCHhH--HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeecc
Q psy17089 79 AIIESDIIIFIVDGRQGLVEQD--KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALY 147 (419)
Q Consensus 79 ~~~~~d~il~v~d~~~~~~~~~--~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~ 147 (419)
++.++|++++|+|.++..+... .|+....+. ...|+++|+||+|+...... ..+. ..+ ..++++||++
T Consensus 72 ~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sak~ 150 (211)
T cd04111 72 YYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLG-MKYIETSART 150 (211)
T ss_pred HhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhC-CEEEEEeCCC
Confidence 8899999999999886433222 222222222 24578999999999775443 2222 344 3789999999
Q ss_pred CCCHHHHHHHHHHhcCCc
Q psy17089 148 GNGIKNFLENILTIELPY 165 (419)
Q Consensus 148 ~~~v~~l~~~i~~~~~~~ 165 (419)
|.|++++|+.|.+.+.+.
T Consensus 151 g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 151 GDNVEEAFELLTQEIYER 168 (211)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999876543
No 332
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.81 E-value=4.2e-19 Score=158.77 Aligned_cols=149 Identities=26% Similarity=0.325 Sum_probs=107.2
Q ss_pred EEEEEeCCCCchhHHHHHHhCCce------------------------------eeecCCCCccceeeeEeeEEeCeeEE
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENR------------------------------VITYDTPGTTRDSIKSLFEYNNKKYI 233 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~------------------------------~~~~~~~~~t~~~~~~~~~~~~~~~~ 233 (419)
+|+++|++++|||||+.+|+.... .......|+|++.....+.+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999999962210 00112458899998999999999999
Q ss_pred EEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCC-------CCHHHHHHHHHHHHcC-CcEEEEEEcccC
Q psy17089 234 LIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQN-------ISAQDINIANFIYESG-RSLIVCVNKWDS 305 (419)
Q Consensus 234 liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~-------~~~~~~~~~~~~~~~~-~~~iiv~NK~Dl 305 (419)
+|||||+. .|. .....++..+|++++|+|++++ ...+..+.+..+...+ +|+++|+||+|+
T Consensus 81 liDtpG~~----------~~~-~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl 149 (219)
T cd01883 81 ILDAPGHR----------DFV-PNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDD 149 (219)
T ss_pred EEECCChH----------HHH-HHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcccc
Confidence 99999983 232 3344677889999999999984 3334455555555555 689999999999
Q ss_pred CC----hhhHHHHHHHHHHHcCCCC----CCcEEEEeccCCCCHHH
Q psy17089 306 II----HNQRKIIKNNIKKKLNFLS----FAMFNFISAIKLNNINS 343 (419)
Q Consensus 306 ~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~SA~~g~gv~~ 343 (419)
.. ......+.+.+...+.... ..+++++||++|.|+++
T Consensus 150 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 150 VTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred ccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence 73 2333445555544443332 36899999999999873
No 333
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.81 E-value=6e-19 Score=152.20 Aligned_cols=147 Identities=20% Similarity=0.197 Sum_probs=106.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.|++++|++|||||||++++.+.. +...+.+++.+.....+.+++ ..+.+|||||+. ++......++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~~ 69 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNG--YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQD---------EFDKLRPLCY 69 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCCh---------hhcccccccc
Confidence 379999999999999999998753 345555666665555667776 466789999997 3334445577
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHh--cCCCEEEEEeccCCCCCC------------cc-----hhHH-hcCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINSS------------IS-----LDFY-ELGIG 138 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~Dl~~~~------------~~-----~~~~-~~~~~ 138 (419)
.++|++++|+|..++.+... ..+...++. .+.|+++|+||+|+.... .+ ..+. ..+..
T Consensus 70 ~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~ 149 (173)
T cd04130 70 PDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGAC 149 (173)
T ss_pred CCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCC
Confidence 89999999999887544332 234444443 468999999999986532 11 1222 34455
Q ss_pred CeEEEeeccCCCHHHHHHHHHH
Q psy17089 139 NPHIISALYGNGIKNFLENILT 160 (419)
Q Consensus 139 ~~~~vSa~~~~~v~~l~~~i~~ 160 (419)
.++++||++|.|++++|+.+..
T Consensus 150 ~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 150 EYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred eEEEEeCCCCCCHHHHHHHHHh
Confidence 7899999999999999998753
No 334
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.81 E-value=1.5e-19 Score=163.51 Aligned_cols=148 Identities=20% Similarity=0.254 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCC-CHhH-HHHHHHHHhcCCCEEEEEeccCCCCCCcc----hhHH-hcCCCCeEEE
Q psy17089 71 EMTKQTKQAIIESDIIIFIVDGRQGL-VEQD-KLITNFLRKSGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHII 143 (419)
Q Consensus 71 ~~~~~~~~~~~~~d~il~v~d~~~~~-~~~~-~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~----~~~~-~~~~~~~~~v 143 (419)
++......+++++|.+++|+|+.++. +... ..++..+...++|+++|+||+|+...... .+.+ ..+. +++++
T Consensus 25 R~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~-~v~~~ 103 (245)
T TIGR00157 25 RKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGY-QVLMT 103 (245)
T ss_pred ccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCC-eEEEE
Confidence 44445556799999999999988544 2222 23334455578999999999999754433 2222 4454 78999
Q ss_pred eeccCCCHHHHHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCC-------Cc
Q psy17089 144 SALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTP-------GT 216 (419)
Q Consensus 144 Sa~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~-------~~ 216 (419)
||++|.|++++++.+.. ..++++|.+|||||||+|+|++.....+++.+ +|
T Consensus 104 SAktg~gi~eLf~~l~~----------------------~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hT 161 (245)
T TIGR00157 104 SSKNQDGLKELIEALQN----------------------RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHT 161 (245)
T ss_pred ecCCchhHHHHHhhhcC----------------------CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCc
Confidence 99999999999987652 25889999999999999999987554444333 36
Q ss_pred cceeeeEeeEEeCeeEEEEeCCCCCCCCc
Q psy17089 217 TRDSIKSLFEYNNKKYILIDTAGIRRRNK 245 (419)
Q Consensus 217 t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 245 (419)
|+......+ . ...++||||+..+..
T Consensus 162 T~~~~l~~l--~--~~~liDtPG~~~~~l 186 (245)
T TIGR00157 162 TTHVELFHF--H--GGLIADTPGFNEFGL 186 (245)
T ss_pred CCceEEEEc--C--CcEEEeCCCccccCC
Confidence 666544443 2 348999999977653
No 335
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.81 E-value=7.6e-19 Score=181.50 Aligned_cols=156 Identities=24% Similarity=0.319 Sum_probs=119.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcch----hhHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK----KGIMHEMTKQTK 77 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~----~~~~~~~~~~~~ 77 (419)
..+|+++|++|||||||+|+|+|.+. .+++++++|.+...+.+.+++.++.+|||||+.+... ....+.+....
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~- 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY- 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH-
Confidence 46899999999999999999998754 5788999999999999999999999999999975431 11222222111
Q ss_pred HHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc----hhHH-hcCCCCeEEEeeccCCCHH
Q psy17089 78 QAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGIK 152 (419)
Q Consensus 78 ~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~----~~~~-~~~~~~~~~vSa~~~~~v~ 152 (419)
.....+|++++|+|+++. ..+..+...+.+.++|+++|+||+|+.+.+.. .++. .+|. +++++||++|.|++
T Consensus 81 l~~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~-pVvpiSA~~g~GId 157 (772)
T PRK09554 81 ILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGC-PVIPLVSTRGRGIE 157 (772)
T ss_pred HhccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCC-CEEEEEeecCCCHH
Confidence 113589999999999863 33344556667789999999999999765443 2222 4565 88999999999999
Q ss_pred HHHHHHHHhc
Q psy17089 153 NFLENILTIE 162 (419)
Q Consensus 153 ~l~~~i~~~~ 162 (419)
++++.+.+..
T Consensus 158 eL~~~I~~~~ 167 (772)
T PRK09554 158 ALKLAIDRHQ 167 (772)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 336
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.81 E-value=8.8e-19 Score=157.84 Aligned_cols=159 Identities=25% Similarity=0.266 Sum_probs=117.3
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeee-----------------cCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcc
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVIT-----------------YDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKT 246 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~-----------------~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 246 (419)
+|+++|++|+|||||+++|+....... ....+.+.......+.+++.++.+|||||+.++.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~-- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI-- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH--
Confidence 489999999999999999985321110 1123455566667778888999999999995442
Q ss_pred hHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHc----
Q psy17089 247 FEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKL---- 322 (419)
Q Consensus 247 ~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~---- 322 (419)
.....+++.+|++++|+|++++...+...+++.+...++|+++|+||+|+..... ....+++++.+
T Consensus 79 ---------~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~-~~~~~~i~~~~~~~~ 148 (237)
T cd04168 79 ---------AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADL-EKVYQEIKEKLSSDI 148 (237)
T ss_pred ---------HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCH-HHHHHHHHHHHCCCe
Confidence 2344688999999999999999888888899999889999999999999874221 11222222111
Q ss_pred --------------------------------------------------------CCCCCCcEEEEeccCCCCHHHHHH
Q psy17089 323 --------------------------------------------------------NFLSFAMFNFISAIKLNNINSFME 346 (419)
Q Consensus 323 --------------------------------------------------------~~~~~~~~~~~SA~~g~gv~~l~~ 346 (419)
......|++..||.++.|+..|++
T Consensus 149 ~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~ 228 (237)
T cd04168 149 VPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLE 228 (237)
T ss_pred EEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHH
Confidence 112246888889999999999999
Q ss_pred HHHHHHhh
Q psy17089 347 SINHVYDS 354 (419)
Q Consensus 347 ~i~~~~~~ 354 (419)
.+.+.++.
T Consensus 229 ~~~~~~p~ 236 (237)
T cd04168 229 GITKLFPT 236 (237)
T ss_pred HHHHhcCC
Confidence 99887653
No 337
>KOG1489|consensus
Probab=99.81 E-value=5.3e-19 Score=157.43 Aligned_cols=160 Identities=21% Similarity=0.227 Sum_probs=122.9
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe-eEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK-KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
...|+++|.||+|||||+|+|+.... .+.+|++||..+...++.+++. ++.+-|.||+.+...+ .+-+....++
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~----nkGlG~~FLr 270 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHM----NKGLGYKFLR 270 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccc----cCcccHHHHH
Confidence 34699999999999999999998864 8899999999999999888765 5999999999877643 3333466779
Q ss_pred HHhhcCEEEEEecCCCC---CCHHHHHHH-HHHHH-----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEE
Q psy17089 261 SILEANVVILLLDAQQN---ISAQDINIA-NFIYE-----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFN 331 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~---~~~~~~~~~-~~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (419)
++.+|+..++|+|.+.+ ...+..+.+ ..+.. ...|.++|+||+|+.+. .....+++.+.+. ...++
T Consensus 271 HiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea--e~~~l~~L~~~lq---~~~V~ 345 (366)
T KOG1489|consen 271 HIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA--EKNLLSSLAKRLQ---NPHVV 345 (366)
T ss_pred HHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH--HHHHHHHHHHHcC---CCcEE
Confidence 99999999999999987 434444332 22221 46899999999999522 2223345555444 34699
Q ss_pred EEeccCCCCHHHHHHHHHHH
Q psy17089 332 FISAIKLNNINSFMESINHV 351 (419)
Q Consensus 332 ~~SA~~g~gv~~l~~~i~~~ 351 (419)
++||++++|+.+|.+.+.+.
T Consensus 346 pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 346 PVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred EeeeccccchHHHHHHHhhc
Confidence 99999999999999888753
No 338
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.81 E-value=1.1e-18 Score=153.79 Aligned_cols=151 Identities=21% Similarity=0.221 Sum_probs=106.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
||+++|++|||||||+++|++.. +...+..++.+.....+.+++ ..+.+|||||.. .+......++.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~---------~~~~~~~~~~~ 69 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDT--FEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSY---------SFPAMRKLSIQ 69 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCccCCCchhhheeEEEEECCEEEEEEEEECCCch---------hhhHHHHHHhh
Confidence 68999999999999999999864 334444555555666677777 467799999987 33334455788
Q ss_pred hCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCCEEEEEeccCCCCC-Ccc-----hhHHhcC-CCCeEEEeeccCC
Q psy17089 82 ESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINS-SIS-----LDFYELG-IGNPHIISALYGN 149 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~Dl~~~-~~~-----~~~~~~~-~~~~~~vSa~~~~ 149 (419)
++|++++|+|..+..+... ..+...+.. .++|+++|+||+|+... ... ....... ...++++||++|.
T Consensus 70 ~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~ 149 (198)
T cd04147 70 NSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNE 149 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCC
Confidence 9999999999886433222 222222222 47899999999999763 222 1111111 1367899999999
Q ss_pred CHHHHHHHHHHhcCCc
Q psy17089 150 GIKNFLENILTIELPY 165 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~~ 165 (419)
|++++++++.+.+...
T Consensus 150 gv~~l~~~l~~~~~~~ 165 (198)
T cd04147 150 NVLEVFKELLRQANLP 165 (198)
T ss_pred CHHHHHHHHHHHhhcc
Confidence 9999999999876543
No 339
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.80 E-value=1.8e-18 Score=146.89 Aligned_cols=146 Identities=23% Similarity=0.206 Sum_probs=107.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
||+++|++|||||||+++|++.. +...+.+++.+........++ ..+.+||+||.. .+.......+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~~~ 69 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQE---------EFSAMRDLYIR 69 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChH---------HHHHHHHHHHh
Confidence 68999999999999999999764 455556666666666677764 467899999987 44455667788
Q ss_pred hCCEEEEEEeCCCCCCHhH--HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 82 ESDIIIFIVDGRQGLVEQD--KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~~--~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.+|++++|+|..+..+..+ .++..+... .+.|+++|+||+|+...... ..+. ..+ .+++++||+++.|
T Consensus 70 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~ 148 (160)
T cd00876 70 QGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWG-CPFIETSAKDNIN 148 (160)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcC-CcEEEeccCCCCC
Confidence 9999999999876432222 222223222 36899999999999874433 2222 233 3789999999999
Q ss_pred HHHHHHHHHHh
Q psy17089 151 IKNFLENILTI 161 (419)
Q Consensus 151 v~~l~~~i~~~ 161 (419)
++++++.|.+.
T Consensus 149 i~~l~~~l~~~ 159 (160)
T cd00876 149 IDEVFKLLVRE 159 (160)
T ss_pred HHHHHHHHHhh
Confidence 99999999864
No 340
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.80 E-value=1.3e-18 Score=152.73 Aligned_cols=146 Identities=19% Similarity=0.164 Sum_probs=105.2
Q ss_pred EcCCCCCHHHHHHHHhCCCCceecCC-CCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCC
Q psy17089 8 VGRPNVGKSTLFNRLTNSRDALVANY-PGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESD 84 (419)
Q Consensus 8 vG~~~vGKSsl~n~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d 84 (419)
+|.+|||||||+++|+... +...+ +++..+.....+.+++ ..+.+|||||++ ++......+++++|
T Consensus 1 vG~~~vGKTsLi~r~~~~~--f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e---------~~~~l~~~~~~~ad 69 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGE--FEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQE---------KFGGLRDGYYIQGQ 69 (200)
T ss_pred CCCCCCCHHHHHHHHhcCC--CCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCch---------hhhhhhHHHhcCCC
Confidence 6999999999999999643 23332 3333444444555554 577799999997 56666777899999
Q ss_pred EEEEEEeCCCCCCHhH-HHHHHHHHh--cCCCEEEEEeccCCCCCCcc---hhHH-hcCCCCeEEEeeccCCCHHHHHHH
Q psy17089 85 IIIFIVDGRQGLVEQD-KLITNFLRK--SGQPIVLVINKSENINSSIS---LDFY-ELGIGNPHIISALYGNGIKNFLEN 157 (419)
Q Consensus 85 ~il~v~d~~~~~~~~~-~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~---~~~~-~~~~~~~~~vSa~~~~~v~~l~~~ 157 (419)
++++|+|.+++.+... ..|...+++ .+.|+++|+||+|+...... .++. ..+. .++++||++|.|++++|.+
T Consensus 70 ~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~-~~~e~SAk~~~~v~~~F~~ 148 (200)
T smart00176 70 CAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNL-QYYDISAKSNYNFEKPFLW 148 (200)
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHH
Confidence 9999999987544332 234444443 46899999999998654322 2222 2333 7899999999999999999
Q ss_pred HHHhcCCc
Q psy17089 158 ILTIELPY 165 (419)
Q Consensus 158 i~~~~~~~ 165 (419)
|.+.+.+.
T Consensus 149 l~~~i~~~ 156 (200)
T smart00176 149 LARKLIGD 156 (200)
T ss_pred HHHHHHhc
Confidence 99877554
No 341
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.80 E-value=1.5e-18 Score=152.71 Aligned_cols=173 Identities=15% Similarity=0.153 Sum_probs=124.7
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecC-CCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYD-TPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~ 261 (419)
++|+++|.+|+|||||+|+++|.+.+..+. .+++|.........+.+.++.++||||+.+.....+.+...........
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 479999999999999999999987655442 4578888877878888999999999999877543333333333333344
Q ss_pred HhhcCEEEEEecCCCCCCHHHHHHHHHHHHc-----CCcEEEEEEcccCCChhhHHHH----HHHHHHHcCCCCCCcEEE
Q psy17089 262 ILEANVVILLLDAQQNISAQDINIANFIYES-----GRSLIVCVNKWDSIIHNQRKII----KNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 262 ~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~~~iiv~NK~Dl~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 332 (419)
...+|++++|+|+.+ .+..+...++.+.+. -.++++|+|++|.......++. ...+......+++ .++.
T Consensus 81 ~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~-r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGG-RYVA 158 (196)
T ss_pred CCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCC-eEEE
Confidence 567899999999987 888888888888763 2688999999998765433322 1233444444332 2333
Q ss_pred E-----eccCCCCHHHHHHHHHHHHhhcCC
Q psy17089 333 I-----SAIKLNNINSFMESINHVYDSSII 357 (419)
Q Consensus 333 ~-----SA~~g~gv~~l~~~i~~~~~~~~~ 357 (419)
. |+..+.++++|++.+.+...+...
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~ 188 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKENGG 188 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHhcCC
Confidence 3 356678999999999999887443
No 342
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.80 E-value=1.2e-18 Score=175.10 Aligned_cols=149 Identities=23% Similarity=0.355 Sum_probs=117.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe-EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK-SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.|+|+++|++|+|||||+++|.+.... ....+++|.+.....+.+.+. .+.+|||||++ .+.......+
T Consensus 87 ~p~V~I~Ghvd~GKTSLl~~l~~~~v~-~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe---------~F~~~r~rga 156 (587)
T TIGR00487 87 PPVVTIMGHVDHGKTSLLDSIRKTKVA-QGEAGGITQHIGAYHVENEDGKMITFLDTPGHE---------AFTSMRARGA 156 (587)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCcc-cccCCceeecceEEEEEECCCcEEEEEECCCCc---------chhhHHHhhh
Confidence 379999999999999999999986432 344567888887777887554 89999999998 4445556678
Q ss_pred HhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc--h-hHHhcC--------CCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS--L-DFYELG--------IGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~--~-~~~~~~--------~~~~~~vSa~~~~ 149 (419)
..+|++++|+|+.++..++..+.+..++..++|+++++||+|+...... . .+...+ ..+++++||++|.
T Consensus 157 ~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe 236 (587)
T TIGR00487 157 KVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD 236 (587)
T ss_pred ccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence 8999999999999888888877788887789999999999999654321 1 111111 1258999999999
Q ss_pred CHHHHHHHHHH
Q psy17089 150 GIKNFLENILT 160 (419)
Q Consensus 150 ~v~~l~~~i~~ 160 (419)
|++++++.+..
T Consensus 237 GI~eLl~~I~~ 247 (587)
T TIGR00487 237 GIDELLDMILL 247 (587)
T ss_pred ChHHHHHhhhh
Confidence 99999999864
No 343
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.80 E-value=4.5e-19 Score=151.13 Aligned_cols=155 Identities=20% Similarity=0.237 Sum_probs=109.2
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHHHH
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~ 261 (419)
||+++|.+|||||||+++|.+... .....+....+.....+..++. .+.+||++|+. ++...+ ...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~----------~~~~~~-~~~ 68 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQE----------RFDSLR-DIF 68 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSG----------GGHHHH-HHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-ccccccccccccccccccccccccccccccccccc----------cccccc-ccc
Confidence 799999999999999999997642 2223333335666666766665 56779999983 332222 257
Q ss_pred HhhcCEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccC
Q psy17089 262 ILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIK 337 (419)
Q Consensus 262 ~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 337 (419)
++.+|++++|+|.++..+..... |+..+.. .+.|+++|+||.|+.+..... .++..+.....+ .+++++||++
T Consensus 69 ~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~--~~~~~~~~~~~~-~~~~e~Sa~~ 145 (162)
T PF00071_consen 69 YRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVS--VEEAQEFAKELG-VPYFEVSAKN 145 (162)
T ss_dssp HTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSC--HHHHHHHHHHTT-SEEEEEBTTT
T ss_pred ccccccccccccccccccccccccccccccccccccccceeeeccccccccccch--hhHHHHHHHHhC-CEEEEEECCC
Confidence 88999999999999987666653 4444443 258999999999986532211 111222222233 7999999999
Q ss_pred CCCHHHHHHHHHHHHh
Q psy17089 338 LNNINSFMESINHVYD 353 (419)
Q Consensus 338 g~gv~~l~~~i~~~~~ 353 (419)
+.|+.++|..+.+.+.
T Consensus 146 ~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 146 GENVKEIFQELIRKIL 161 (162)
T ss_dssp TTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999988753
No 344
>PLN03108 Rab family protein; Provisional
Probab=99.80 E-value=3e-18 Score=152.40 Aligned_cols=151 Identities=17% Similarity=0.120 Sum_probs=108.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+|+|++|||||||+++|++... .....++++.+.....+.+++. .+.+|||||.+ .+......++
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~-~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~---------~~~~~~~~~~ 76 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE---------SFRSITRSYY 76 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcH---------HHHHHHHHHh
Confidence 5899999999999999999997642 2223344555555556677764 46699999987 5555667778
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHh--cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.++|++++|+|..+..+... .|+...... ...|+++|+||+|+...+.. .++. ..+. .++++||+++.|
T Consensus 77 ~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~ 155 (210)
T PLN03108 77 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQN 155 (210)
T ss_pred ccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 89999999999886433332 222222222 36899999999999765443 2233 3444 789999999999
Q ss_pred HHHHHHHHHHhcCC
Q psy17089 151 IKNFLENILTIELP 164 (419)
Q Consensus 151 v~~l~~~i~~~~~~ 164 (419)
++++|..+.+.+..
T Consensus 156 v~e~f~~l~~~~~~ 169 (210)
T PLN03108 156 VEEAFIKTAAKIYK 169 (210)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998876643
No 345
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.80 E-value=1.5e-18 Score=154.37 Aligned_cols=149 Identities=15% Similarity=0.110 Sum_probs=105.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+|||++|||||||+++|.+.. +...+.++..+.....+.+++. .+.+|||+|++ .+......++
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~--f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e---------~~~~l~~~~~ 70 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA--YPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSS---------YYDNVRPLAY 70 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCCccCCccccceEEEEEECCEEEEEEEEeCCCcH---------HHHHHhHHhc
Confidence 589999999999999999999753 3444444434444445667765 46689999997 4555556678
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHh--cCCCEEEEEeccCCCCCC------------cc-----hhHH-hcCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINSS------------IS-----LDFY-ELGIG 138 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~Dl~~~~------------~~-----~~~~-~~~~~ 138 (419)
+++|++++|+|..+..+... ..|...++. .+.|+++|+||+|+.... .+ ..+. ..+..
T Consensus 71 ~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~ 150 (222)
T cd04173 71 PDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAV 150 (222)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCC
Confidence 99999999999887533332 233333333 468999999999996531 11 1222 34434
Q ss_pred CeEEEeeccCCC-HHHHHHHHHHhc
Q psy17089 139 NPHIISALYGNG-IKNFLENILTIE 162 (419)
Q Consensus 139 ~~~~vSa~~~~~-v~~l~~~i~~~~ 162 (419)
.++++||+++.+ ++++|.......
T Consensus 151 ~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 151 SYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred EEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 789999999885 999999987654
No 346
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.80 E-value=1.5e-18 Score=174.12 Aligned_cols=159 Identities=20% Similarity=0.290 Sum_probs=109.4
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCC-CccceeeeEeeEEe------------------CeeEEEEeCCCCC
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTP-GTTRDSIKSLFEYN------------------NKKYILIDTAGIR 241 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~-~~t~~~~~~~~~~~------------------~~~~~liDtpG~~ 241 (419)
++.-|+++|++|+|||||+|+|.+... ....+ ++|.+.....+..+ ...+.+|||||+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v--~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~- 79 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAV--AKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGH- 79 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc--ccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCc-
Confidence 345799999999999999999998743 22223 34443222222111 124889999999
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhh-----------
Q psy17089 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQ----------- 310 (419)
Q Consensus 242 ~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~----------- 310 (419)
+.|...+. .+++.+|++++|+|++++...++.+.+..+...++|+++|+||+|+.....
T Consensus 80 ---------e~f~~l~~-~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~s 149 (590)
T TIGR00491 80 ---------EAFTNLRK-RGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESF 149 (590)
T ss_pred ---------HhHHHHHH-HHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHH
Confidence 44433333 577899999999999998888888888888888999999999999964210
Q ss_pred ---HHHHHH-----------HHHHH------c----CCCCCCcEEEEeccCCCCHHHHHHHHHHHH
Q psy17089 311 ---RKIIKN-----------NIKKK------L----NFLSFAMFNFISAIKLNNINSFMESINHVY 352 (419)
Q Consensus 311 ---~~~~~~-----------~~~~~------~----~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 352 (419)
...... ++.+. + ......+++++||++|.|+++|...+....
T Consensus 150 ak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 150 SKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 000000 11100 0 122347999999999999999999886543
No 347
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.80 E-value=2.1e-18 Score=150.70 Aligned_cols=139 Identities=20% Similarity=0.211 Sum_probs=109.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC------Cc---------eecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSR------DA---------LVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGI 68 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~------~~---------~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 68 (419)
+|+++|++|+|||||+++|++.. .. ......++|.+.....+++++.++.++||||+.
T Consensus 4 ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~------- 76 (195)
T cd01884 4 NVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA------- 76 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH-------
Confidence 69999999999999999998531 00 011245788888777777888999999999986
Q ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCC-EEEEEeccCCCCCCcc--------hhHH-hcCC-
Q psy17089 69 MHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQP-IVLVINKSENINSSIS--------LDFY-ELGI- 137 (419)
Q Consensus 69 ~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p-~ilv~NK~Dl~~~~~~--------~~~~-~~~~- 137 (419)
.+.......+..+|++++|+|+..+....+.+++..+...++| +++|+||+|+...... ..++ ..++
T Consensus 77 --~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~ 154 (195)
T cd01884 77 --DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFD 154 (195)
T ss_pred --HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccc
Confidence 5667778889999999999999998889889999999988987 7799999999743322 1111 2333
Q ss_pred ---CCeEEEeeccCCCH
Q psy17089 138 ---GNPHIISALYGNGI 151 (419)
Q Consensus 138 ---~~~~~vSa~~~~~v 151 (419)
-+++++||++|.|.
T Consensus 155 ~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 155 GDNTPIVRGSALKALEG 171 (195)
T ss_pred ccCCeEEEeeCccccCC
Confidence 36899999999874
No 348
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.80 E-value=2.9e-18 Score=145.08 Aligned_cols=147 Identities=20% Similarity=0.143 Sum_probs=103.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|++|||||||+|+|.+..... ...++.+.+.....+...+ ..+.+||+||+. .+......++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~~ 70 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDE-NYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE---------RFRSITPSYY 70 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCC-ccCCceeeeeEEEEEEECCEEEEEEEEecCChH---------HHHHHHHHHh
Confidence 379999999999999999999865321 1233444444444555543 678899999986 5556677788
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHhc---CCCEEEEEeccCCCCCCcc-----hhHHhcCCCCeEEEeeccCCCH
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRKS---GQPIVLVINKSENINSSIS-----LDFYELGIGNPHIISALYGNGI 151 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~~---~~p~ilv~NK~Dl~~~~~~-----~~~~~~~~~~~~~vSa~~~~~v 151 (419)
+++|++++|+|+.+...... ..+...+... +.|+++|+||+|+...... .++......+++++||+++.|+
T Consensus 71 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 150 (159)
T cd00154 71 RGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENV 150 (159)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCH
Confidence 99999999999886322111 2233333332 5899999999999733322 2333332348999999999999
Q ss_pred HHHHHHHH
Q psy17089 152 KNFLENIL 159 (419)
Q Consensus 152 ~~l~~~i~ 159 (419)
+++++.|.
T Consensus 151 ~~~~~~i~ 158 (159)
T cd00154 151 EELFQSLA 158 (159)
T ss_pred HHHHHHHh
Confidence 99999876
No 349
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.80 E-value=1.5e-18 Score=149.96 Aligned_cols=149 Identities=19% Similarity=0.226 Sum_probs=102.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
++||+++|++|||||||+++|++.. +...+.++..+.....+.+++. .+.+|||||++ .+.......
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~ 69 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQ--FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQE---------DYDRLRPLS 69 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCccccceEEEEEECCEEEEEEEEeCCCch---------hhhhccccc
Confidence 4799999999999999999999753 2333434444444455666665 56799999986 333333346
Q ss_pred HHhCCEEEEEEeCCCCCCHhH--HHHHHHHHh--cCCCEEEEEeccCCCCCCcc-----------------hhHH-hcCC
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINSSIS-----------------LDFY-ELGI 137 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~-----------------~~~~-~~~~ 137 (419)
+.++|++++|+|..+..+... ..+...++. .+.|+++|+||+|+...... ..+. ..+.
T Consensus 70 ~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~ 149 (175)
T cd01870 70 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGA 149 (175)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCC
Confidence 789999999999875432222 223333443 47899999999998654221 1111 2234
Q ss_pred CCeEEEeeccCCCHHHHHHHHHHh
Q psy17089 138 GNPHIISALYGNGIKNFLENILTI 161 (419)
Q Consensus 138 ~~~~~vSa~~~~~v~~l~~~i~~~ 161 (419)
..++++||++|.|++++|..+.+.
T Consensus 150 ~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 150 FGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred cEEEEeccccCcCHHHHHHHHHHH
Confidence 478999999999999999999864
No 350
>KOG0083|consensus
Probab=99.80 E-value=2.8e-20 Score=143.75 Aligned_cols=160 Identities=21% Similarity=0.156 Sum_probs=115.3
Q ss_pred EEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhh
Q psy17089 187 IVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILE 264 (419)
Q Consensus 187 l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ 264 (419)
++|++++|||.|+-++-......-.-...+.++.....+..++. ++++|||+|| |+|++ -+..|++.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagq----------erfrs-vt~ayyrd 70 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQ----------ERFRS-VTHAYYRD 70 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccch----------HHHhh-hhHhhhcc
Confidence 68999999999988876543211122334556666666666665 5677999999 77763 44589999
Q ss_pred cCEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCC
Q psy17089 265 ANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNN 340 (419)
Q Consensus 265 ad~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 340 (419)
||..++++|+++..++.+.+ |+..+.+ ..+.+++++||||+..+.... .+-.+.++...++||+++|||+|.|
T Consensus 71 a~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~---~ddg~kla~~y~ipfmetsaktg~n 147 (192)
T KOG0083|consen 71 ADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVK---RDDGEKLAEAYGIPFMETSAKTGFN 147 (192)
T ss_pred cceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccc---cchHHHHHHHHCCCceecccccccc
Confidence 99999999999999998864 6666554 567889999999996533211 1111222223348999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCC
Q psy17089 341 INSFMESINHVYDSSIIHLS 360 (419)
Q Consensus 341 v~~l~~~i~~~~~~~~~~~~ 360 (419)
++..|-.|++.+.......+
T Consensus 148 vd~af~~ia~~l~k~~~~~~ 167 (192)
T KOG0083|consen 148 VDLAFLAIAEELKKLKMGAP 167 (192)
T ss_pred HhHHHHHHHHHHHHhccCCC
Confidence 99999999998876654443
No 351
>PRK12735 elongation factor Tu; Reviewed
Probab=99.80 E-value=1.7e-18 Score=167.99 Aligned_cols=150 Identities=18% Similarity=0.220 Sum_probs=112.6
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCC------cee---------eecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCC
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGE------NRV---------ITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~------~~~---------~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 244 (419)
.+.++|+++|++++|||||+++|++. ... ......|+|.+.....+..++.++.++||||+
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh---- 85 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGH---- 85 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCH----
Confidence 36689999999999999999999852 111 11125588888777767677789999999998
Q ss_pred cchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEE-EEEEcccCCChhh-HHHHHHHHHHHc
Q psy17089 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLI-VCVNKWDSIIHNQ-RKIIKNNIKKKL 322 (419)
Q Consensus 245 ~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i-iv~NK~Dl~~~~~-~~~~~~~~~~~~ 322 (419)
+.|. ..+...+..+|++++|+|+..+...++.+++..+...++|.+ +|+||+|+.+... .+....++...+
T Consensus 86 ------~~f~-~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l 158 (396)
T PRK12735 86 ------ADYV-KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELL 158 (396)
T ss_pred ------HHHH-HHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHH
Confidence 3443 444567788999999999999888888888888888899966 5799999975432 233334555555
Q ss_pred CCCC----CCcEEEEeccCCCC
Q psy17089 323 NFLS----FAMFNFISAIKLNN 340 (419)
Q Consensus 323 ~~~~----~~~~~~~SA~~g~g 340 (419)
.... ..+++++||++|.|
T Consensus 159 ~~~~~~~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 159 SKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HHcCCCcCceeEEecchhcccc
Confidence 4332 37899999999976
No 352
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.80 E-value=2.1e-18 Score=147.71 Aligned_cols=148 Identities=20% Similarity=0.183 Sum_probs=102.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEE--CCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI--GKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
||+++|++|||||||+++|.+.. +...++.+..+. .....+ .+..+.+|||||.+ +.......++.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~~~ 69 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEE--FPENVPRVLPEI-TIPADVTPERVPTTIVDTSSRP---------QDRANLAAEIR 69 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--CCccCCCcccce-EeeeeecCCeEEEEEEeCCCch---------hhhHHHhhhcc
Confidence 79999999999999999999764 233344332222 222233 34678899999987 23334455678
Q ss_pred hCCEEEEEEeCCCCCCHhH--HHHHHHHHh--cCCCEEEEEeccCCCCCCcc------hhH-H-hc-CCCCeEEEeeccC
Q psy17089 82 ESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINSSIS------LDF-Y-EL-GIGNPHIISALYG 148 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~------~~~-~-~~-~~~~~~~vSa~~~ 148 (419)
.+|++++|+|..++.+... ..+...++. .+.|+++|+||+|+.+.... ... . .. ....++++||+++
T Consensus 70 ~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 149 (166)
T cd01893 70 KANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTL 149 (166)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccc
Confidence 9999999999887554443 234454543 36899999999999765541 111 1 12 2247899999999
Q ss_pred CCHHHHHHHHHHhcC
Q psy17089 149 NGIKNFLENILTIEL 163 (419)
Q Consensus 149 ~~v~~l~~~i~~~~~ 163 (419)
.|++++|+.+.+.+.
T Consensus 150 ~~v~~lf~~~~~~~~ 164 (166)
T cd01893 150 INVSEVFYYAQKAVL 164 (166)
T ss_pred cCHHHHHHHHHHHhc
Confidence 999999999987653
No 353
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.80 E-value=1.6e-18 Score=178.22 Aligned_cols=149 Identities=25% Similarity=0.372 Sum_probs=120.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
.|.|+|+|++|+|||||+++|.+.... ....+++|.+.....+.+++..+.+|||||+. .|.......+.
T Consensus 290 ~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe---------~F~~m~~rga~ 359 (787)
T PRK05306 290 PPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGHE---------AFTAMRARGAQ 359 (787)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCCc---------cchhHHHhhhh
Confidence 379999999999999999999875432 34456788888888888889999999999998 44455566788
Q ss_pred hCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc---hhHHhc-------C-CCCeEEEeeccCCC
Q psy17089 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFYEL-------G-IGNPHIISALYGNG 150 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~---~~~~~~-------~-~~~~~~vSa~~~~~ 150 (419)
.+|++++|+|+.++...+..+.+..++..++|+++++||+|+...... .++... + ..+++++||++|.|
T Consensus 360 ~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~G 439 (787)
T PRK05306 360 VTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEG 439 (787)
T ss_pred hCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCC
Confidence 999999999999988888888888888889999999999999654321 121111 1 13689999999999
Q ss_pred HHHHHHHHHH
Q psy17089 151 IKNFLENILT 160 (419)
Q Consensus 151 v~~l~~~i~~ 160 (419)
+++|++.|..
T Consensus 440 I~eLle~I~~ 449 (787)
T PRK05306 440 IDELLEAILL 449 (787)
T ss_pred chHHHHhhhh
Confidence 9999999874
No 354
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.80 E-value=2.9e-18 Score=154.31 Aligned_cols=154 Identities=27% Similarity=0.270 Sum_probs=113.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhC
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 83 (419)
+|+++|.+|+|||||+|+|++.. ..+..++++|.++..+.+.+++..+.+|||||+.+..... ..+..+....++++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~--~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADG--KGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEECCeEEEEEECCCcccccccc--hhHHHHHHHhhccC
Confidence 79999999999999999999875 3467788999999999999999999999999986433111 13344556789999
Q ss_pred CEEEEEEeCCCCCCHhH-------------------------------------------HHHHHHHHhc----------
Q psy17089 84 DIIIFIVDGRQGLVEQD-------------------------------------------KLITNFLRKS---------- 110 (419)
Q Consensus 84 d~il~v~d~~~~~~~~~-------------------------------------------~~~~~~l~~~---------- 110 (419)
|++++|+|+.+...... ..+.+.|++.
T Consensus 79 d~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~ 158 (233)
T cd01896 79 DLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred CEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence 99999999865321110 1122222211
Q ss_pred -----------------CCCEEEEEeccCCCCCCcchhHHhcCCCCeEEEeeccCCCHHHHHHHHHHhc
Q psy17089 111 -----------------GQPIVLVINKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLENILTIE 162 (419)
Q Consensus 111 -----------------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~vSa~~~~~v~~l~~~i~~~~ 162 (419)
.+|+++|+||+|+....+...+ ... ..++++||+++.|++++++.+.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~~-~~~-~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDLL-ARQ-PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred cCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHHH-hcC-CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 2589999999999765544332 222 3689999999999999999999754
No 355
>KOG0086|consensus
Probab=99.80 E-value=1.2e-18 Score=138.00 Aligned_cols=150 Identities=19% Similarity=0.163 Sum_probs=116.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
++|++++|+.|.|||.|+.+|...+ .......++..++..+.+.++++ +++||||+|++ +|+..+..+
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~k-fkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQE---------rFRSVtRsY 78 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENK-FKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQE---------RFRSVTRSY 78 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhh-hcccccceeeeeecceeeeecCcEEEEEEeecccHH---------HHHHHHHHH
Confidence 4799999999999999999999653 22223335667778888888885 56699999998 899999999
Q ss_pred HHhCCEEEEEEeCCCCCCHhHHHHHHHHHh------cCCCEEEEEeccCCCCCCcc--h---hHH-hcCCCCeEEEeecc
Q psy17089 80 IIESDIIIFIVDGRQGLVEQDKLITNFLRK------SGQPIVLVINKSENINSSIS--L---DFY-ELGIGNPHIISALY 147 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~~~~~~~l~~------~~~p~ilv~NK~Dl~~~~~~--~---~~~-~~~~~~~~~vSa~~ 147 (419)
+++|.++++|+|.+.+ ....++.+||.. .++-+++++||.|+...+++ . +|. ...+ ..+++||++
T Consensus 79 YRGAAGAlLVYD~Tsr--dsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel-~flETSa~T 155 (214)
T KOG0086|consen 79 YRGAAGALLVYDITSR--DSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENEL-MFLETSALT 155 (214)
T ss_pred hccccceEEEEeccch--hhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccce-eeeeecccc
Confidence 9999999999998863 333455566654 46778999999999988887 2 222 2233 678999999
Q ss_pred CCCHHHHHHHHHHhcCC
Q psy17089 148 GNGIKNFLENILTIELP 164 (419)
Q Consensus 148 ~~~v~~l~~~i~~~~~~ 164 (419)
|+|+++.|-.+.+.+..
T Consensus 156 GeNVEEaFl~c~~tIl~ 172 (214)
T KOG0086|consen 156 GENVEEAFLKCARTILN 172 (214)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 99999999887765543
No 356
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.80 E-value=7.6e-19 Score=142.19 Aligned_cols=137 Identities=18% Similarity=0.212 Sum_probs=105.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
|.||+++|++|+|||||+++|.+.... ...|.. +.+.+ .+|||||.+-.. +++.........
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~~~~~-----~~KTq~-----i~~~~---~~IDTPGEyiE~-----~~~y~aLi~ta~ 62 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNGEEIR-----YKKTQA-----IEYYD---NTIDTPGEYIEN-----PRFYHALIVTAQ 62 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcCCCCC-----cCccce-----eEecc---cEEECChhheeC-----HHHHHHHHHHHh
Confidence 359999999999999999999986421 112222 23323 259999976332 367778888889
Q ss_pred hCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc----hhHH-hcCCCCeEEEeeccCCCHHHHHH
Q psy17089 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGIKNFLE 156 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~----~~~~-~~~~~~~~~vSa~~~~~v~~l~~ 156 (419)
+||+|++|.|++++.......+.+.+ ++|+|-|+||+|+...... ..++ ..|..++|++|+.+|+|+++|.+
T Consensus 63 dad~V~ll~dat~~~~~~pP~fa~~f---~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 63 DADVVLLLQDATEPRSVFPPGFASMF---NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD 139 (143)
T ss_pred hCCEEEEEecCCCCCccCCchhhccc---CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence 99999999999988777777777665 6899999999999943332 2333 56888999999999999999999
Q ss_pred HHH
Q psy17089 157 NIL 159 (419)
Q Consensus 157 ~i~ 159 (419)
+|.
T Consensus 140 ~L~ 142 (143)
T PF10662_consen 140 YLE 142 (143)
T ss_pred HHh
Confidence 875
No 357
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.79 E-value=3.7e-18 Score=152.79 Aligned_cols=149 Identities=20% Similarity=0.190 Sum_probs=103.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCC-ccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLT-RDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
.||+++|++|||||||+++|++.... ...+.++. .+.....+.+++ ..+.+|||||++ . ... ..+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~------~~~---~~~ 68 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--M------WTE---DSC 68 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--h------HHH---hHH
Confidence 48999999999999999999764321 12332222 245555666655 567899999996 1 111 123
Q ss_pred HH-hCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeecc
Q psy17089 80 II-ESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALY 147 (419)
Q Consensus 80 ~~-~~d~il~v~d~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~ 147 (419)
+. ++|++++|+|..+..+... ..+...+.. .+.|+++|+||+|+...+.. ..+. ..+. +++++||++
T Consensus 69 ~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~SA~~ 147 (221)
T cd04148 69 MQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDC-KFIETSAGL 147 (221)
T ss_pred hhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCC-eEEEecCCC
Confidence 44 8999999999987543332 333444443 36899999999999766544 1222 2344 789999999
Q ss_pred CCCHHHHHHHHHHhcCC
Q psy17089 148 GNGIKNFLENILTIELP 164 (419)
Q Consensus 148 ~~~v~~l~~~i~~~~~~ 164 (419)
+.|++++|+.+.+.+..
T Consensus 148 ~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 148 QHNVDELLEGIVRQIRL 164 (221)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987754
No 358
>PRK12289 GTPase RsgA; Reviewed
Probab=99.79 E-value=1.5e-18 Score=163.83 Aligned_cols=146 Identities=25% Similarity=0.324 Sum_probs=105.8
Q ss_pred HHHHHHHHhCCEEEEEEeCCCCC-CHhH-HHHHHHHHhcCCCEEEEEeccCCCCCCcc---hhHH-hcCCCCeEEEeecc
Q psy17089 74 KQTKQAIIESDIIIFIVDGRQGL-VEQD-KLITNFLRKSGQPIVLVINKSENINSSIS---LDFY-ELGIGNPHIISALY 147 (419)
Q Consensus 74 ~~~~~~~~~~d~il~v~d~~~~~-~~~~-~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~---~~~~-~~~~~~~~~vSa~~ 147 (419)
.....++.++|.+++|+|..++. .... ..++......++|+++|+||+|+...... .+.+ ..+. .++++||++
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~-~v~~iSA~t 159 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGY-QPLFISVET 159 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCC-eEEEEEcCC
Confidence 33445689999999999987542 2211 22333334568999999999999765433 2222 4566 789999999
Q ss_pred CCCHHHHHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCC-------cccee
Q psy17089 148 GNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPG-------TTRDS 220 (419)
Q Consensus 148 ~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~-------~t~~~ 220 (419)
+.|+++|++.+.. ..++|+|.||||||||+|+|++.....++..++ ||.+.
T Consensus 160 g~GI~eL~~~L~~----------------------ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~ 217 (352)
T PRK12289 160 GIGLEALLEQLRN----------------------KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHV 217 (352)
T ss_pred CCCHHHHhhhhcc----------------------ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCcee
Confidence 9999999888752 137999999999999999999887777777777 67765
Q ss_pred eeEeeEEeCeeEEEEeCCCCCCCCc
Q psy17089 221 IKSLFEYNNKKYILIDTAGIRRRNK 245 (419)
Q Consensus 221 ~~~~~~~~~~~~~liDtpG~~~~~~ 245 (419)
... .+.+ ...|+||||+..+..
T Consensus 218 ~l~--~l~~-g~~liDTPG~~~~~l 239 (352)
T PRK12289 218 ELF--ELPN-GGLLADTPGFNQPDL 239 (352)
T ss_pred EEE--ECCC-CcEEEeCCCcccccc
Confidence 333 3322 237999999987764
No 359
>PLN03127 Elongation factor Tu; Provisional
Probab=99.79 E-value=3.5e-18 Score=167.14 Aligned_cols=162 Identities=18% Similarity=0.257 Sum_probs=117.8
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCC------ceee---------ecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCC
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGE------NRVI---------TYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~------~~~~---------~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 244 (419)
.+.++|+++|++++|||||+++|++. .... ....+|+|++.....++.++.++.++||||+.+
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~-- 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD-- 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc--
Confidence 36689999999999999999999732 1111 123468999988888877888999999999943
Q ss_pred cchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCc-EEEEEEcccCCChhhH-HHHHHHHHHHc
Q psy17089 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRS-LIVCVNKWDSIIHNQR-KIIKNNIKKKL 322 (419)
Q Consensus 245 ~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~~-~~~~~~~~~~~ 322 (419)
|. ..+...+..+|++++|+|++.+...++.+++..+...++| +|+|+||+|+++.... +.+..++.+.+
T Consensus 137 --------f~-~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l 207 (447)
T PLN03127 137 --------YV-KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELL 207 (447)
T ss_pred --------hH-HHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence 22 3333556679999999999999889999999999999999 5789999999864332 22333454444
Q ss_pred CCC----CCCcEEEEecc---CCCC-------HHHHHHHHHHHH
Q psy17089 323 NFL----SFAMFNFISAI---KLNN-------INSFMESINHVY 352 (419)
Q Consensus 323 ~~~----~~~~~~~~SA~---~g~g-------v~~l~~~i~~~~ 352 (419)
... ...|++++||. +|.| +.+|++.+.+.+
T Consensus 208 ~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 208 SFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred HHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 332 23688999886 4444 455555555543
No 360
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.79 E-value=2.1e-18 Score=147.32 Aligned_cols=142 Identities=18% Similarity=0.229 Sum_probs=100.4
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCC
Q psy17089 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESD 84 (419)
Q Consensus 5 i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d 84 (419)
|+++|++|||||||+++|.+.. ......|+...+ ...+...+..+.+|||||+. ++......+++++|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~-~~~~~~pt~g~~--~~~i~~~~~~l~i~Dt~G~~---------~~~~~~~~~~~~ad 69 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSER-SLESVVPTTGFN--SVAIPTQDAIMELLEIGGSQ---------NLRKYWKRYLSGSQ 69 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC-CcccccccCCcc--eEEEeeCCeEEEEEECCCCc---------chhHHHHHHHhhCC
Confidence 7999999999999999999763 212222333332 34456677889999999997 45556667899999
Q ss_pred EEEEEEeCCCCCC--HhHHHHHHHHHh-cCCCEEEEEeccCCCCCCcchh---------HH-hcCCCCeEEEeecc----
Q psy17089 85 IIIFIVDGRQGLV--EQDKLITNFLRK-SGQPIVLVINKSENINSSISLD---------FY-ELGIGNPHIISALY---- 147 (419)
Q Consensus 85 ~il~v~d~~~~~~--~~~~~~~~~l~~-~~~p~ilv~NK~Dl~~~~~~~~---------~~-~~~~~~~~~vSa~~---- 147 (419)
++++|+|+.+... ....++.+++.. .++|+++|+||+|+.......+ +. ..+. .++++||++
T Consensus 70 ~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~Sa~~~~s~ 148 (164)
T cd04162 70 GLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRW-ILQGTSLDDDGSP 148 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCce-EEEEeeecCCCCh
Confidence 9999999876432 222334444433 5789999999999876554311 11 1222 568888888
Q ss_pred --CCCHHHHHHHHH
Q psy17089 148 --GNGIKNFLENIL 159 (419)
Q Consensus 148 --~~~v~~l~~~i~ 159 (419)
++|++++|+.+.
T Consensus 149 ~~~~~v~~~~~~~~ 162 (164)
T cd04162 149 SRMEAVKDLLSQLI 162 (164)
T ss_pred hHHHHHHHHHHHHh
Confidence 999999998875
No 361
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.79 E-value=3e-18 Score=166.41 Aligned_cols=149 Identities=17% Similarity=0.220 Sum_probs=112.7
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCC------ceee---------ecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCC
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGE------NRVI---------TYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~------~~~~---------~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 244 (419)
.+.++|+++|+.++|||||+++|++. .... .....|+|.+.....++.++.++.+|||||+
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh---- 85 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGH---- 85 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCch----
Confidence 46689999999999999999999842 1111 1123688998877777667788999999999
Q ss_pred cchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEE-EEEEcccCCChhhH-HHHHHHHHHHc
Q psy17089 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLI-VCVNKWDSIIHNQR-KIIKNNIKKKL 322 (419)
Q Consensus 245 ~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i-iv~NK~Dl~~~~~~-~~~~~~~~~~~ 322 (419)
++|. ..+...+..+|++++|+|++.+...++.+++..+...++|.+ +|+||+|+.+.... +...+++.+.+
T Consensus 86 ------~~f~-~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l 158 (394)
T TIGR00485 86 ------ADYV-KNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELL 158 (394)
T ss_pred ------HHHH-HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHH
Confidence 4443 344566778999999999999888888889999988899866 68999999864432 33344555555
Q ss_pred CCCC----CCcEEEEeccCCC
Q psy17089 323 NFLS----FAMFNFISAIKLN 339 (419)
Q Consensus 323 ~~~~----~~~~~~~SA~~g~ 339 (419)
.... .++++++||++|.
T Consensus 159 ~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 159 SEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HhcCCCccCccEEECcccccc
Confidence 5443 2789999999985
No 362
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.79 E-value=2.6e-18 Score=173.60 Aligned_cols=155 Identities=22% Similarity=0.259 Sum_probs=115.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcee--------cC------CCCCCccceEEEEEE---CC--eEEEEEEcCCCCC
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALV--------AN------YPGLTRDRHYGEGYI---GK--KSFIIIDTGGFEP 62 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~--------~~------~~~~t~~~~~~~~~~---~~--~~~~liDtpG~~~ 62 (419)
.++|+|+|++|+|||||+++|+...+.+. .+ ..++|.+.....+.| ++ ..+.+|||||+.
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~- 81 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV- 81 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH-
Confidence 46899999999999999999986532211 11 136677666555655 23 578899999998
Q ss_pred cchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc---hhHH-hcCC-
Q psy17089 63 EVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFY-ELGI- 137 (419)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~---~~~~-~~~~- 137 (419)
.+...+..++..+|++++|+|++++........+......++|+++|+||+|+...... .++. .++.
T Consensus 82 --------dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~ 153 (595)
T TIGR01393 82 --------DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLD 153 (595)
T ss_pred --------HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC
Confidence 55666777899999999999999887777655444444568999999999998654321 1222 2233
Q ss_pred -CCeEEEeeccCCCHHHHHHHHHHhcCCc
Q psy17089 138 -GNPHIISALYGNGIKNFLENILTIELPY 165 (419)
Q Consensus 138 -~~~~~vSa~~~~~v~~l~~~i~~~~~~~ 165 (419)
.+++++||++|.|++++++.|.+.+|..
T Consensus 154 ~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 154 ASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred cceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 3589999999999999999999988754
No 363
>KOG0395|consensus
Probab=99.79 E-value=1.2e-18 Score=151.66 Aligned_cols=158 Identities=20% Similarity=0.178 Sum_probs=120.9
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCee--EEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKK--YILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
...||+++|.+|||||+|+.++++.. .+..+.++..+.+...+..++.. +.|+||+|+.++. ..+.
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~--f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~----------~~~~ 69 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGR--FVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFS----------AMRD 69 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccc--cccccCCCccccceEEEEECCEEEEEEEEcCCCcccCh----------HHHH
Confidence 35799999999999999999999875 46678888888888888888764 4569999974443 2333
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEE
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (419)
.+++.+|++++|+++++..++++.. +...+.. ...|+++|+||+|+...... ..++ ...++....++++++
T Consensus 70 -~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V--~~ee-g~~la~~~~~~f~E~ 145 (196)
T KOG0395|consen 70 -LYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQV--SEEE-GKALARSWGCAFIET 145 (196)
T ss_pred -HhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhcccc--CHHH-HHHHHHhcCCcEEEe
Confidence 5889999999999999999888864 4444422 45799999999999653221 1122 222334445789999
Q ss_pred eccCCCCHHHHHHHHHHHHhh
Q psy17089 334 SAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~ 354 (419)
||+.+.+++++|..+.+....
T Consensus 146 Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 146 SAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred eccCCcCHHHHHHHHHHHHHh
Confidence 999999999999999987765
No 364
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.79 E-value=1.7e-18 Score=149.51 Aligned_cols=148 Identities=20% Similarity=0.181 Sum_probs=104.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeE--EEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKS--FIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|++|+|||||+++|++.. +...+.++..+.....+.+++.. +.+|||||.... ......++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~ 69 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDA--FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY---------DRLRPLSY 69 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccc---------cccccccC
Confidence 389999999999999999999754 33444444444444556677654 569999998732 22333457
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHh--cCCCEEEEEeccCCCCCCc------------c-----hhHH-hcCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINSSI------------S-----LDFY-ELGIG 138 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~------------~-----~~~~-~~~~~ 138 (419)
.++|++++|+|..++-+... ..+...++. .+.|+++|+||+|+..... . ..+. ..+..
T Consensus 70 ~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 149 (174)
T cd04135 70 PMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAH 149 (174)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCC
Confidence 89999999999876544332 234455543 5789999999999865421 1 1111 34555
Q ss_pred CeEEEeeccCCCHHHHHHHHHHh
Q psy17089 139 NPHIISALYGNGIKNFLENILTI 161 (419)
Q Consensus 139 ~~~~vSa~~~~~v~~l~~~i~~~ 161 (419)
.++++||++|.|++++|+.+.+.
T Consensus 150 ~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 150 CYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred EEEEecCCcCCCHHHHHHHHHHH
Confidence 68999999999999999998864
No 365
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.79 E-value=3.2e-18 Score=150.56 Aligned_cols=160 Identities=14% Similarity=0.174 Sum_probs=122.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecC-CCCCCccceEEEEEECCeEEEEEEcCCCCCcc--hhhHHHHHHHHHHHHH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVAN-YPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV--KKGIMHEMTKQTKQAI 80 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~--~~~~~~~~~~~~~~~~ 80 (419)
+|+++|++|||||||+|+|+|...+.+.. .+++|.++......++|+.+.+|||||+.+.. .+...+++........
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~ 81 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSA 81 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcC
Confidence 79999999999999999999987654443 45789999999999999999999999998653 2334445555555556
Q ss_pred HhCCEEEEEEeCCCCCCHhHHHHHHHHHhc-----CCCEEEEEeccCCCCCCcchhH-----------H-hcCCCCeEEE
Q psy17089 81 IESDIIIFIVDGRQGLVEQDKLITNFLRKS-----GQPIVLVINKSENINSSISLDF-----------Y-ELGIGNPHII 143 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~~~~~~~l~~~-----~~p~ilv~NK~Dl~~~~~~~~~-----------~-~~~~~~~~~v 143 (419)
.++|+++||+++.+ ++..+...++.+++. ..++++|+|++|........++ . ..+. .++..
T Consensus 82 ~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~-r~~~f 159 (196)
T cd01852 82 PGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGG-RYVAF 159 (196)
T ss_pred CCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCC-eEEEE
Confidence 78999999999887 888888888888762 3689999999998765433111 1 1222 33344
Q ss_pred e-----eccCCCHHHHHHHHHHhcCCc
Q psy17089 144 S-----ALYGNGIKNFLENILTIELPY 165 (419)
Q Consensus 144 S-----a~~~~~v~~l~~~i~~~~~~~ 165 (419)
+ +..+.++++|+++|.+.+++.
T Consensus 160 ~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 160 NNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred eCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 3 566788999999999988873
No 366
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.79 E-value=3.5e-18 Score=146.46 Aligned_cols=144 Identities=24% Similarity=0.300 Sum_probs=101.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhC
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 83 (419)
+|+++|.+|||||||+++|.+... ....| |.......+...+..+.+|||||.. ++......++.++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~--~~~~~--t~g~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~~~a 67 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP--KKVAP--TVGFTPTKLRLDKYEVCIFDLGGGA---------NFRGIWVNYYAEA 67 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC--ccccC--cccceEEEEEECCEEEEEEECCCcH---------HHHHHHHHHHcCC
Confidence 489999999999999999997521 12222 2223344667788899999999986 5556677889999
Q ss_pred CEEEEEEeCCCCCCHh--HHHHHHHHHh---cCCCEEEEEeccCCCCCCcc---hhHH---h----cCC-CCeEEEeecc
Q psy17089 84 DIIIFIVDGRQGLVEQ--DKLITNFLRK---SGQPIVLVINKSENINSSIS---LDFY---E----LGI-GNPHIISALY 147 (419)
Q Consensus 84 d~il~v~d~~~~~~~~--~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~---~~~~---~----~~~-~~~~~vSa~~ 147 (419)
|+++||+|+++..... ..++...++. .++|+++|+||+|+...... .+.. . .+. -.++++||++
T Consensus 68 ~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~ 147 (167)
T cd04161 68 HGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIE 147 (167)
T ss_pred CEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEcee
Confidence 9999999988643222 2333333332 37899999999999876633 1111 1 111 1457799999
Q ss_pred C------CCHHHHHHHHHH
Q psy17089 148 G------NGIKNFLENILT 160 (419)
Q Consensus 148 ~------~~v~~l~~~i~~ 160 (419)
| .|+.+.|++|..
T Consensus 148 g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 148 GLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCCCccccCHHHHHHHHhc
Confidence 8 899999999864
No 367
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.79 E-value=1.9e-18 Score=148.57 Aligned_cols=146 Identities=20% Similarity=0.199 Sum_probs=101.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
||+++|++|||||||+++|++... ...+.++..+.........+ ..+.+|||||++.. .......+.
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~---------~~~~~~~~~ 70 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKF--PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEY---------DRLRPLSYP 70 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccc---------cccchhhcC
Confidence 799999999999999999998642 23333333444444555554 45789999999732 223334568
Q ss_pred hCCEEEEEEeCCCCCCHhH--HHHHHHHHh--cCCCEEEEEeccCCCCCCcc----------------hhHH-hcCCCCe
Q psy17089 82 ESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINSSIS----------------LDFY-ELGIGNP 140 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~----------------~~~~-~~~~~~~ 140 (419)
.+|++++|+|..+..+... ..+...+.. .+.|+++|+||+|+...... .++. ..+..++
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 150 (171)
T cd00157 71 NTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGY 150 (171)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEE
Confidence 8999999999876433222 333444433 35899999999998766531 1122 3344478
Q ss_pred EEEeeccCCCHHHHHHHHHH
Q psy17089 141 HIISALYGNGIKNFLENILT 160 (419)
Q Consensus 141 ~~vSa~~~~~v~~l~~~i~~ 160 (419)
+++||++|.|++++++.|.+
T Consensus 151 ~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 151 MECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EEeecCCCCCHHHHHHHHhh
Confidence 99999999999999999875
No 368
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.79 E-value=6.6e-17 Score=148.25 Aligned_cols=113 Identities=17% Similarity=0.222 Sum_probs=95.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCce-----------------ecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchh
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDAL-----------------VANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKK 66 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~-----------------~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 66 (419)
+|+++|++|+|||||+++|+...+.. .....++|++.....+.|++.++.+|||||+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~----- 75 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHV----- 75 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcH-----
Confidence 48999999999999999997422211 11234788888889999999999999999987
Q ss_pred hHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCC
Q psy17089 67 GIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENIN 125 (419)
Q Consensus 67 ~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~ 125 (419)
.+......+++.+|++++|+|+..+....+..+++.++..++|+++++||+|+..
T Consensus 76 ----df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 76 ----DFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTG 130 (270)
T ss_pred ----HHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 4556678899999999999999998888888888999888999999999999764
No 369
>KOG0081|consensus
Probab=99.79 E-value=1.9e-19 Score=143.47 Aligned_cols=157 Identities=20% Similarity=0.172 Sum_probs=113.2
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEe---------C--eeEEEEeCCCCCCCCcchHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN---------N--KKYILIDTAGIRRRNKTFEVIE 251 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---------~--~~~~liDtpG~~~~~~~~~~~e 251 (419)
+|...+|++||||||++.+++... +...-..++.+++....+-++ + ..+.+|||+|| |
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~-F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQ----------E 78 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGK-FNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQ----------E 78 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCc-ccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccH----------H
Confidence 567778999999999999988653 233233345566666655553 1 24667999999 8
Q ss_pred HHHHHHHHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCC
Q psy17089 252 KFSVIKTLKSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLS 326 (419)
Q Consensus 252 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 326 (419)
+|++..+ ..++.|-++++++|.++..++.+. .|+..++. .+.-+|+++||+||.+.... ..++ ...++...
T Consensus 79 RFRSLTT-AFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~V--s~~q-a~~La~ky 154 (219)
T KOG0081|consen 79 RFRSLTT-AFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVV--SEDQ-AAALADKY 154 (219)
T ss_pred HHHHHHH-HHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhh--hHHH-HHHHHHHh
Confidence 8886655 799999999999999998777665 46666664 46779999999999544322 1122 22223333
Q ss_pred CCcEEEEeccCCCCHHHHHHHHHHHHhh
Q psy17089 327 FAMFNFISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 327 ~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
+.|+|++||-+|.||++..+.+...+.+
T Consensus 155 glPYfETSA~tg~Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 155 GLPYFETSACTGTNVEKAVELLLDLVMK 182 (219)
T ss_pred CCCeeeeccccCcCHHHHHHHHHHHHHH
Confidence 4899999999999999988888776654
No 370
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.79 E-value=3.5e-18 Score=151.04 Aligned_cols=153 Identities=19% Similarity=0.123 Sum_probs=107.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC-c-eecCCCCCCccceEEEEEEC---------------------------C-----
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRD-A-LVANYPGLTRDRHYGEGYIG---------------------------K----- 49 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~-~-~~~~~~~~t~~~~~~~~~~~---------------------------~----- 49 (419)
+|+++|+.|+|||||+.+|.+... . ......+.|..+....+.+. +
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 689999999999999999986521 0 11111233444443333332 3
Q ss_pred -eEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCC-CCHhHHHHHHHHHhcCC-CEEEEEeccCCCCC
Q psy17089 50 -KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQG-LVEQDKLITNFLRKSGQ-PIVLVINKSENINS 126 (419)
Q Consensus 50 -~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-~~~~~~~~~~~l~~~~~-p~ilv~NK~Dl~~~ 126 (419)
..+.+|||||+. .+...+...+.++|++++|+|+.++ ........+..+...+. |+++|+||+|+...
T Consensus 82 ~~~i~~iDtPG~~---------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~ 152 (203)
T cd01888 82 VRHVSFVDCPGHE---------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKE 152 (203)
T ss_pred ccEEEEEECCChH---------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCH
Confidence 789999999986 6677788888999999999999874 34444455555555454 78999999999764
Q ss_pred Ccc-------hhHHhc---CCCCeEEEeeccCCCHHHHHHHHHHhcCCc
Q psy17089 127 SIS-------LDFYEL---GIGNPHIISALYGNGIKNFLENILTIELPY 165 (419)
Q Consensus 127 ~~~-------~~~~~~---~~~~~~~vSa~~~~~v~~l~~~i~~~~~~~ 165 (419)
... .++... ...+++++||++|.|++++++.+.+.+++.
T Consensus 153 ~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 153 EQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred HHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 332 111211 123689999999999999999999888763
No 371
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.79 E-value=6.4e-18 Score=145.68 Aligned_cols=145 Identities=18% Similarity=0.306 Sum_probs=102.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
++|+++|++|||||||+++|.+...... .+ |.......+.+.+..+.+|||||+. .+.......+.+
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~~~~~--~~--t~g~~~~~i~~~~~~~~~~D~~G~~---------~~~~~~~~~~~~ 81 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDISHI--TP--TQGFNIKTVQSDGFKLNVWDIGGQR---------AIRPYWRNYFEN 81 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCCCccc--CC--CCCcceEEEEECCEEEEEEECCCCH---------HHHHHHHHHhcC
Confidence 5899999999999999999998642211 11 2223344667778999999999986 455556667889
Q ss_pred CCEEEEEEeCCCCCC--HhHHHHHHHHH---hcCCCEEEEEeccCCCCCCcchhHH-hcCCC-------CeEEEeeccCC
Q psy17089 83 SDIIIFIVDGRQGLV--EQDKLITNFLR---KSGQPIVLVINKSENINSSISLDFY-ELGIG-------NPHIISALYGN 149 (419)
Q Consensus 83 ~d~il~v~d~~~~~~--~~~~~~~~~l~---~~~~p~ilv~NK~Dl~~~~~~~~~~-~~~~~-------~~~~vSa~~~~ 149 (419)
+|++++|+|+.+... ....++...++ ..++|+++++||+|+.......++. .++.. .++++||++|.
T Consensus 82 ~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~ 161 (173)
T cd04155 82 TDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGE 161 (173)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCC
Confidence 999999999875322 12233333332 2468999999999987654432221 12221 36789999999
Q ss_pred CHHHHHHHHHH
Q psy17089 150 GIKNFLENILT 160 (419)
Q Consensus 150 ~v~~l~~~i~~ 160 (419)
|+++++++|.+
T Consensus 162 gi~~~~~~l~~ 172 (173)
T cd04155 162 GLQEGMNWVCK 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999875
No 372
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.79 E-value=5e-18 Score=147.38 Aligned_cols=151 Identities=19% Similarity=0.142 Sum_probs=107.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|.+|||||||+++|++.. +...+.+++.+........++ ..+.+|||||+. ++......++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~~ 70 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGH--FVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQD---------EYSILPQKYS 70 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CccccCcchhhhEEEEEEECCEEEEEEEEECCChH---------hhHHHHHHHH
Confidence 589999999999999999999754 334444455444455566665 356799999987 4444555678
Q ss_pred HhCCEEEEEEeCCCCCCH--hHHHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVE--QDKLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~--~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
..++++++|+|..+..+. ...++..+++. .+.|+++|+||+|+...+.. ..+. ..+ .+++++||+++.
T Consensus 71 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 149 (180)
T cd04137 71 IGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWG-AAFLESSARENE 149 (180)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 899999999998864322 22333334332 36799999999999764433 1122 223 378999999999
Q ss_pred CHHHHHHHHHHhcCCc
Q psy17089 150 GIKNFLENILTIELPY 165 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~~ 165 (419)
|+.+++.++.+.+...
T Consensus 150 gv~~l~~~l~~~~~~~ 165 (180)
T cd04137 150 NVEEAFELLIEEIEKV 165 (180)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999998766543
No 373
>PRK00049 elongation factor Tu; Reviewed
Probab=99.79 E-value=4.7e-18 Score=164.78 Aligned_cols=150 Identities=17% Similarity=0.211 Sum_probs=114.1
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCc------ee---------eecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCC
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGEN------RV---------ITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~------~~---------~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 244 (419)
.+.++|+++|++++|||||+++|++.. .. ......|+|.+.....+..++.++.++||||+
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~---- 85 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGH---- 85 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCH----
Confidence 356899999999999999999998631 00 11125688888877777667789999999998
Q ss_pred cchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEE-EEEEcccCCChhh-HHHHHHHHHHHc
Q psy17089 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLI-VCVNKWDSIIHNQ-RKIIKNNIKKKL 322 (419)
Q Consensus 245 ~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i-iv~NK~Dl~~~~~-~~~~~~~~~~~~ 322 (419)
++|. ..+...+..+|++++|+|+..+...++.+++..+...++|.+ +++||+|+.+... .+....++...+
T Consensus 86 ------~~f~-~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l 158 (396)
T PRK00049 86 ------ADYV-KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELL 158 (396)
T ss_pred ------HHHH-HHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHH
Confidence 3343 344467789999999999999988999999999999999976 5899999985332 233444566555
Q ss_pred CCCC----CCcEEEEeccCCCC
Q psy17089 323 NFLS----FAMFNFISAIKLNN 340 (419)
Q Consensus 323 ~~~~----~~~~~~~SA~~g~g 340 (419)
...+ ..+++++||++|.+
T Consensus 159 ~~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 159 SKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HhcCCCccCCcEEEeecccccC
Confidence 5432 47899999999864
No 374
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.79 E-value=4.8e-18 Score=165.41 Aligned_cols=162 Identities=19% Similarity=0.170 Sum_probs=111.3
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCce--eeecCCCCccceeeeEeeE--------------------------EeCeeE
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENR--VITYDTPGTTRDSIKSLFE--------------------------YNNKKY 232 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~--~~~~~~~~~t~~~~~~~~~--------------------------~~~~~~ 232 (419)
+.++|+++|++++|||||+++|.+... .......|.|.+.....+. ..+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 568999999999999999999986421 0111122333332211110 014678
Q ss_pred EEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCC-CHHHHHHHHHHHHcC-CcEEEEEEcccCCChhh
Q psy17089 233 ILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNI-SAQDINIANFIYESG-RSLIVCVNKWDSIIHNQ 310 (419)
Q Consensus 233 ~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~-~~~~~~~~~~~~~~~-~~~iiv~NK~Dl~~~~~ 310 (419)
.+|||||+ ++|. ..+...+..+|++++|+|++++. ..+..+.+..+...+ .|+++|+||+|+.+...
T Consensus 83 ~liDtPGh----------~~f~-~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~ 151 (406)
T TIGR03680 83 SFVDAPGH----------ETLM-ATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEK 151 (406)
T ss_pred EEEECCCH----------HHHH-HHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHH
Confidence 99999999 4553 34456777899999999999876 556666666666665 46899999999986544
Q ss_pred HHHHHHHHHHHcCC--CCCCcEEEEeccCCCCHHHHHHHHHHHHh
Q psy17089 311 RKIIKNNIKKKLNF--LSFAMFNFISAIKLNNINSFMESINHVYD 353 (419)
Q Consensus 311 ~~~~~~~~~~~~~~--~~~~~~~~~SA~~g~gv~~l~~~i~~~~~ 353 (419)
..+..+++.+.+.. ...++++++||++|.|+++|++.|...++
T Consensus 152 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 152 ALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 33333344433332 12468999999999999999999988654
No 375
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.78 E-value=1.8e-18 Score=146.10 Aligned_cols=146 Identities=27% Similarity=0.273 Sum_probs=104.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|.+|+|||||+|+|++.. ......+++|.+.....+..++ ..+.+|||||+.+ +........
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~---------~~~~~~~~~ 71 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQED---------YRAIRRLYY 71 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCccc---------chHHHHHHH
Confidence 589999999999999999999876 5566677888888877788888 6788999999763 223334445
Q ss_pred HhCCEEEEEEeCCCCCC-------HhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc----hhHHhcCCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLV-------EQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDFYELGIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~-------~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~----~~~~~~~~~~~~~vSa~~~~ 149 (419)
..++.+++++|...... .....+...+.. +.|+++++||+|+...... ..+...+..+++++||+++.
T Consensus 72 ~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 150 (161)
T TIGR00231 72 RAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGK 150 (161)
T ss_pred hhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCC
Confidence 66777777777543311 111222222222 7899999999999775432 12224444579999999999
Q ss_pred CHHHHHHHHH
Q psy17089 150 GIKNFLENIL 159 (419)
Q Consensus 150 ~v~~l~~~i~ 159 (419)
|++++++.|.
T Consensus 151 gv~~~~~~l~ 160 (161)
T TIGR00231 151 NIDSAFKIVE 160 (161)
T ss_pred CHHHHHHHhh
Confidence 9999998864
No 376
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=9.1e-18 Score=150.99 Aligned_cols=166 Identities=23% Similarity=0.249 Sum_probs=125.3
Q ss_pred ccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcch-HHHHHHHHHH
Q psy17089 179 SIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTF-EVIEKFSVIK 257 (419)
Q Consensus 179 ~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~e~~~~~~ 257 (419)
+...+.|++.|.||||||||++.+++.+ ..+.+||+||.....++++.++.+++++||||+.+..... ..+|+ +
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~----q 239 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIER----Q 239 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHH----H
Confidence 3466899999999999999999999986 4788999999999999999999999999999998776433 23343 2
Q ss_pred HHHHHh-hcCEEEEEecCCC--CCCHHH-HHHHHHHHH-cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEE
Q psy17089 258 TLKSIL-EANVVILLLDAQQ--NISAQD-INIANFIYE-SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 258 ~~~~~~-~ad~~i~v~d~~~--~~~~~~-~~~~~~~~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (419)
+..+++ -++++++++|.+. +.+-++ ..+++.+.. .+.|+++|+||+|+.+.+..++....+. ..+......
T Consensus 240 Ai~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~----~~~~~~~~~ 315 (346)
T COG1084 240 AILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVL----EEGGEEPLK 315 (346)
T ss_pred HHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHHHHHHHHH----hhccccccc
Confidence 222333 3788999999885 555544 356666665 4689999999999987666554443322 223344677
Q ss_pred EeccCCCCHHHHHHHHHHHHh
Q psy17089 333 ISAIKLNNINSFMESINHVYD 353 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~ 353 (419)
+|+..+.+++.+...+.....
T Consensus 316 ~~~~~~~~~d~~~~~v~~~a~ 336 (346)
T COG1084 316 ISATKGCGLDKLREEVRKTAL 336 (346)
T ss_pred eeeeehhhHHHHHHHHHHHhh
Confidence 899999999988887777643
No 377
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.78 E-value=3.1e-18 Score=156.97 Aligned_cols=143 Identities=18% Similarity=0.137 Sum_probs=111.7
Q ss_pred EEEEEeCCCCchhHHHHHHhCCce-----ee------------ecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcc
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENR-----VI------------TYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKT 246 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~-----~~------------~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 246 (419)
+|+++|++|+|||||+++|+.... .. .....|+|.+.....+++++.++.+|||||+.++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df--- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF--- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH---
Confidence 489999999999999999973211 00 1134588888888889999999999999998432
Q ss_pred hHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCC
Q psy17089 247 FEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLS 326 (419)
Q Consensus 247 ~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 326 (419)
. .....+++.+|++++|+|+..+...++..+++.+...++|+++++||+|+.... .....+.+++.+....
T Consensus 78 -------~-~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~-~~~~~~~l~~~l~~~~ 148 (270)
T cd01886 78 -------T-IEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGAD-FFRVVEQIREKLGANP 148 (270)
T ss_pred -------H-HHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCc
Confidence 2 334578899999999999999988888899999999999999999999987532 3345666777776655
Q ss_pred CCcEEEEeccCC
Q psy17089 327 FAMFNFISAIKL 338 (419)
Q Consensus 327 ~~~~~~~SA~~g 338 (419)
....+++||..+
T Consensus 149 ~~~~~Pisa~~~ 160 (270)
T cd01886 149 VPLQLPIGEEDD 160 (270)
T ss_pred eEEEeccccCCC
Confidence 556788888744
No 378
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.78 E-value=6.6e-18 Score=170.24 Aligned_cols=161 Identities=20% Similarity=0.208 Sum_probs=122.3
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceee---------------ecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcch
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVI---------------TYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTF 247 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 247 (419)
.+|+++|+.++|||||+++|+...... .....|+|.......+.+++..+.+|||||+.+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~D----- 76 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHAD----- 76 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHH-----
Confidence 479999999999999999998521111 112347888888888899999999999999943
Q ss_pred HHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCC---
Q psy17089 248 EVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNF--- 324 (419)
Q Consensus 248 ~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~--- 324 (419)
|. .....+++.+|++++|+|++.+...+...++..+.+.++|+++|+||+|+.... ..+..+++.+.+..
T Consensus 77 -----F~-~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~-~~~v~~ei~~l~~~~g~ 149 (594)
T TIGR01394 77 -----FG-GEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSAR-PDEVVDEVFDLFAELGA 149 (594)
T ss_pred -----HH-HHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcC-HHHHHHHHHHHHHhhcc
Confidence 32 334578889999999999999888888889999999999999999999986432 22233333333321
Q ss_pred ---CCCCcEEEEeccCCC----------CHHHHHHHHHHHHhhc
Q psy17089 325 ---LSFAMFNFISAIKLN----------NINSFMESINHVYDSS 355 (419)
Q Consensus 325 ---~~~~~~~~~SA~~g~----------gv~~l~~~i~~~~~~~ 355 (419)
...+|++++||++|. |++.|++.+.+.++..
T Consensus 150 ~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 150 DDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred ccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 123689999999996 7888888888876643
No 379
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.78 E-value=8.9e-18 Score=142.35 Aligned_cols=141 Identities=20% Similarity=0.190 Sum_probs=99.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
||+++|++|||||||+.+++... +...++++ .......+.++|. .+.+|||+|+.. ..++.
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~--f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~--------------~~~~~ 64 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGS--YVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD--------------AQFAS 64 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCC--CCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc--------------hhHHh
Confidence 79999999999999999998642 23333332 3333456777884 577999999962 12457
Q ss_pred hCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCCEEEEEeccCCCC--CCcc-----hhHH-hcCCCCeEEEeeccC
Q psy17089 82 ESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENIN--SSIS-----LDFY-ELGIGNPHIISALYG 148 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~Dl~~--~~~~-----~~~~-~~~~~~~~~vSa~~~ 148 (419)
++|++++|+|.++..+... ..+...+.. .+.|+++|+||+|+.. .+.+ .++. ..+...++++||++|
T Consensus 65 ~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 144 (158)
T cd04103 65 WVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYG 144 (158)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCC
Confidence 8999999999887554444 333444433 3579999999999853 2222 1233 223247899999999
Q ss_pred CCHHHHHHHHHHh
Q psy17089 149 NGIKNFLENILTI 161 (419)
Q Consensus 149 ~~v~~l~~~i~~~ 161 (419)
.|++++|..+.+.
T Consensus 145 ~~i~~~f~~~~~~ 157 (158)
T cd04103 145 LNVERVFQEAAQK 157 (158)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998854
No 380
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.78 E-value=5.4e-18 Score=172.65 Aligned_cols=149 Identities=25% Similarity=0.397 Sum_probs=117.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEE----CCeEEEEEEcCCCCCcchhhHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI----GKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQ 78 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 78 (419)
|+|+|+|++|+|||||+++|.+.... ....+++|.+.....+.+ .+..+.+|||||+. .|......
T Consensus 245 p~V~IvGhvdvGKTSLld~L~~~~~~-~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe---------~F~~mr~r 314 (742)
T CHL00189 245 PIVTILGHVDHGKTTLLDKIRKTQIA-QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE---------AFSSMRSR 314 (742)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCc-cccCCccccccceEEEEEEecCCceEEEEEECCcHH---------HHHHHHHH
Confidence 79999999999999999999976533 334456777655555444 24889999999997 66677777
Q ss_pred HHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc---hhHHh-------cC-CCCeEEEeecc
Q psy17089 79 AIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFYE-------LG-IGNPHIISALY 147 (419)
Q Consensus 79 ~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~---~~~~~-------~~-~~~~~~vSa~~ 147 (419)
++..+|++++|+|+.++...+..+.+..+...++|+++|+||+|+...... .++.. .+ ..+++++||++
T Consensus 315 g~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 315 GANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred HHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 889999999999999888888877788888889999999999999764321 11111 11 23689999999
Q ss_pred CCCHHHHHHHHHHh
Q psy17089 148 GNGIKNFLENILTI 161 (419)
Q Consensus 148 ~~~v~~l~~~i~~~ 161 (419)
|.|+++|++.|...
T Consensus 395 G~GIdeLle~I~~l 408 (742)
T CHL00189 395 GTNIDKLLETILLL 408 (742)
T ss_pred CCCHHHHHHhhhhh
Confidence 99999999998764
No 381
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.78 E-value=1.3e-17 Score=141.10 Aligned_cols=153 Identities=29% Similarity=0.430 Sum_probs=116.3
Q ss_pred EEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEEC-CeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCE
Q psy17089 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG-KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDI 85 (419)
Q Consensus 7 ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ 85 (419)
++|++|+|||||+|+|++.........+++|.+......... +..+.+|||||+.+..... .........++..+|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~--~~~~~~~~~~~~~~d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLG--REREELARRVLERADL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccch--hhHHHHHHHHHHhCCE
Confidence 589999999999999998765545566777777777666665 6789999999997553111 1112455667889999
Q ss_pred EEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcchhH--------HhcCCCCeEEEeeccCCCHHHHHHH
Q psy17089 86 IIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSISLDF--------YELGIGNPHIISALYGNGIKNFLEN 157 (419)
Q Consensus 86 il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~--------~~~~~~~~~~vSa~~~~~v~~l~~~ 157 (419)
+++|+|+..........+.......+.|+++|+||+|+......... ......+++++||+++.|++++++.
T Consensus 79 il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~ 158 (163)
T cd00880 79 ILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREA 158 (163)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHH
Confidence 99999999877776665555666679999999999999877655221 1223357899999999999999999
Q ss_pred HHHh
Q psy17089 158 ILTI 161 (419)
Q Consensus 158 i~~~ 161 (419)
+.+.
T Consensus 159 l~~~ 162 (163)
T cd00880 159 LIEA 162 (163)
T ss_pred HHhh
Confidence 8764
No 382
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.78 E-value=3.7e-18 Score=167.78 Aligned_cols=156 Identities=26% Similarity=0.291 Sum_probs=111.3
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceee------------------------------ecCCCCccceeeeEeeEEeC
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVI------------------------------TYDTPGTTRDSIKSLFEYNN 229 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~ 229 (419)
.+.++|+++|++++|||||+++|+...... .....|+|.+.....+..++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 356899999999999999999998421100 11244888888888888888
Q ss_pred eeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCC---CHHHHHHHHHHHHcC-CcEEEEEEcccC
Q psy17089 230 KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNI---SAQDINIANFIYESG-RSLIVCVNKWDS 305 (419)
Q Consensus 230 ~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~---~~~~~~~~~~~~~~~-~~~iiv~NK~Dl 305 (419)
..+.+|||||+ +.|. ..+..++..+|++++|+|++++. ..+....+..+...+ .++++|+||+|+
T Consensus 85 ~~i~iiDtpGh----------~~f~-~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl 153 (426)
T TIGR00483 85 YEVTIVDCPGH----------RDFI-KNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDS 153 (426)
T ss_pred eEEEEEECCCH----------HHHH-HHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhc
Confidence 99999999998 3342 33445678899999999999883 333334444444445 468999999999
Q ss_pred CC--hhhHHHHHHHHHHHcCCCC----CCcEEEEeccCCCCHHHHHH
Q psy17089 306 II--HNQRKIIKNNIKKKLNFLS----FAMFNFISAIKLNNINSFME 346 (419)
Q Consensus 306 ~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~SA~~g~gv~~l~~ 346 (419)
.+ ........+++.+.+...+ ..+++++||++|.|+++++.
T Consensus 154 ~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 154 VNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred cCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 74 2333344445554443332 36899999999999998664
No 383
>PRK10218 GTP-binding protein; Provisional
Probab=99.78 E-value=9.2e-18 Score=168.92 Aligned_cols=162 Identities=17% Similarity=0.186 Sum_probs=120.8
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceee---------------ecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCc
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVI---------------TYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNK 245 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 245 (419)
...+|+++|+.++|||||+++|+...... .....|+|.......+.+++..+.+|||||+.++.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~- 82 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG- 82 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH-
Confidence 34689999999999999999999632111 11235777777777888889999999999995543
Q ss_pred chHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCC-
Q psy17089 246 TFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNF- 324 (419)
Q Consensus 246 ~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~- 324 (419)
.....+++.+|++++|+|++++...+...++..+...++|.++|+||+|+.... .....+++...+..
T Consensus 83 ----------~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~-~~~vl~ei~~l~~~l 151 (607)
T PRK10218 83 ----------GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGAR-PDWVVDQVFDLFVNL 151 (607)
T ss_pred ----------HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCc-hhHHHHHHHHHHhcc
Confidence 233467899999999999999888888888888888999999999999986432 22233334433321
Q ss_pred -----CCCCcEEEEeccCCC----------CHHHHHHHHHHHHhh
Q psy17089 325 -----LSFAMFNFISAIKLN----------NINSFMESINHVYDS 354 (419)
Q Consensus 325 -----~~~~~~~~~SA~~g~----------gv~~l~~~i~~~~~~ 354 (419)
...+|++++||++|. |+..|++.+.+.++.
T Consensus 152 ~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 152 DATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred CccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 123689999999998 466777766666553
No 384
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.78 E-value=4.6e-18 Score=171.89 Aligned_cols=149 Identities=28% Similarity=0.377 Sum_probs=111.7
Q ss_pred cCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEE
Q psy17089 9 GRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIF 88 (419)
Q Consensus 9 G~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~ 88 (419)
|++|||||||+|+|+|.. ..+++++++|.+...+.+.+++..+.+|||||+.+.......+++..... ...++|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l-~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYL-LNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHH-hhcCCCEEEE
Confidence 899999999999999875 45788999999999999999999999999999975432222222222221 1347899999
Q ss_pred EEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc----hhHH-hcCCCCeEEEeeccCCCHHHHHHHHHHhc
Q psy17089 89 IVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGIKNFLENILTIE 162 (419)
Q Consensus 89 v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~----~~~~-~~~~~~~~~vSa~~~~~v~~l~~~i~~~~ 162 (419)
|+|+++. .....+...+.+.++|+++|+||+|+.+.... ..+. .++. +++++||++|.|++++++.+.+..
T Consensus 79 VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~-pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 79 VVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGV-PVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred EecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCC-CEEEEECCCCCCHHHHHHHHHHHh
Confidence 9998862 22333444455678999999999999765443 1222 3454 789999999999999999998753
No 385
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.78 E-value=2.1e-17 Score=139.87 Aligned_cols=144 Identities=19% Similarity=0.234 Sum_probs=101.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCC
Q psy17089 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESD 84 (419)
Q Consensus 5 i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d 84 (419)
|+++|++|||||||+|+|.+.. ......+++..+ ...+..++..+.+|||||+. .+......++..+|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~~~~~~d 69 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ-FSEDTIPTVGFN--MRKVTKGNVTLKVWDLGGQP---------RFRSMWERYCRGVN 69 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC-CCcCccCCCCcc--eEEEEECCEEEEEEECCCCH---------hHHHHHHHHHhcCC
Confidence 7999999999999999999864 222233333333 33466677889999999986 55566777889999
Q ss_pred EEEEEEeCCCCCCH--hHHHHHHHHHh---cCCCEEEEEeccCCCCCCcch---hHHhc-----CCCCeEEEeeccCCCH
Q psy17089 85 IIIFIVDGRQGLVE--QDKLITNFLRK---SGQPIVLVINKSENINSSISL---DFYEL-----GIGNPHIISALYGNGI 151 (419)
Q Consensus 85 ~il~v~d~~~~~~~--~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~---~~~~~-----~~~~~~~vSa~~~~~v 151 (419)
++++|+|+.+.... ...++..++.. .++|+++|+||+|+....... ..... ...+++++||++|.|+
T Consensus 70 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 149 (159)
T cd04159 70 AIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNI 149 (159)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCCh
Confidence 99999998763221 11333333332 478999999999987654431 11111 1125699999999999
Q ss_pred HHHHHHHHH
Q psy17089 152 KNFLENILT 160 (419)
Q Consensus 152 ~~l~~~i~~ 160 (419)
++++++|.+
T Consensus 150 ~~l~~~l~~ 158 (159)
T cd04159 150 DIVLDWLIK 158 (159)
T ss_pred HHHHHHHhh
Confidence 999999864
No 386
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.78 E-value=9.3e-18 Score=163.23 Aligned_cols=163 Identities=20% Similarity=0.177 Sum_probs=112.6
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCc--eeeecCCCCccceeeeEeeEE------------------e--------CeeE
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGEN--RVITYDTPGTTRDSIKSLFEY------------------N--------NKKY 232 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~--~~~~~~~~~~t~~~~~~~~~~------------------~--------~~~~ 232 (419)
+.++|+++|+.++|||||+.+|.+.. ........|.|.+.......+ + ...+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 56899999999999999999997631 111112335555433211111 0 2578
Q ss_pred EEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCC-CHHHHHHHHHHHHcCC-cEEEEEEcccCCChhh
Q psy17089 233 ILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNI-SAQDINIANFIYESGR-SLIVCVNKWDSIIHNQ 310 (419)
Q Consensus 233 ~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~-~~~~~~~~~~~~~~~~-~~iiv~NK~Dl~~~~~ 310 (419)
.+|||||+ +.|. ..++.....+|++++|+|++++. ..+....+..+...+. |+++|+||+|+.+...
T Consensus 88 ~liDtPG~----------~~f~-~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~ 156 (411)
T PRK04000 88 SFVDAPGH----------ETLM-ATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKER 156 (411)
T ss_pred EEEECCCH----------HHHH-HHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchh
Confidence 99999998 4443 34456667789999999999876 5666666667766664 6899999999986544
Q ss_pred HHHHHHHHHHHcCC--CCCCcEEEEeccCCCCHHHHHHHHHHHHhh
Q psy17089 311 RKIIKNNIKKKLNF--LSFAMFNFISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 311 ~~~~~~~~~~~~~~--~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
.....+.+...+.. ....+++++||++|.|+++|++.|.+.++.
T Consensus 157 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 157 ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 33333444444332 234789999999999999999999886543
No 387
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.78 E-value=4.8e-18 Score=171.62 Aligned_cols=151 Identities=21% Similarity=0.233 Sum_probs=122.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC--ceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRD--ALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
.|+++|++|+|||||+++|++... ......+++|.+..+..+.+++..+.+|||||++ .+...+...+.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe---------~f~~~~~~g~~ 72 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE---------KFISNAIAGGG 72 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH---------HHHHHHHhhhc
Confidence 589999999999999999997531 1122346889999888888889999999999986 67777788889
Q ss_pred hCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCC-EEEEEeccCCCCCCcc-------hhHH-hcC---CCCeEEEeeccCC
Q psy17089 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQP-IVLVINKSENINSSIS-------LDFY-ELG---IGNPHIISALYGN 149 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p-~ilv~NK~Dl~~~~~~-------~~~~-~~~---~~~~~~vSa~~~~ 149 (419)
++|++++|+|+.++..++..+.+.+++..++| +++|+||+|+.+.... .++. ..+ ..+++++||++|.
T Consensus 73 ~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~ 152 (581)
T TIGR00475 73 GIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQ 152 (581)
T ss_pred cCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCC
Confidence 99999999999998888888888888888898 9999999999765432 1222 222 2478999999999
Q ss_pred CHHHHHHHHHHhcC
Q psy17089 150 GIKNFLENILTIEL 163 (419)
Q Consensus 150 ~v~~l~~~i~~~~~ 163 (419)
|+++++..+...+.
T Consensus 153 GI~eL~~~L~~l~~ 166 (581)
T TIGR00475 153 GIGELKKELKNLLE 166 (581)
T ss_pred CchhHHHHHHHHHH
Confidence 99999988876543
No 388
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.78 E-value=1.3e-17 Score=168.67 Aligned_cols=162 Identities=22% Similarity=0.242 Sum_probs=118.3
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceee--------e------cCCCCccceeeeEeeEEe-----CeeEEEEeCCCCC
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVI--------T------YDTPGTTRDSIKSLFEYN-----NKKYILIDTAGIR 241 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~--------~------~~~~~~t~~~~~~~~~~~-----~~~~~liDtpG~~ 241 (419)
...+++++|+.++|||||+++|+...... . ....|.|.......+.+. +..+.||||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 44689999999999999999998531110 0 123467776655555553 4578899999994
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHH
Q psy17089 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKK 321 (419)
Q Consensus 242 ~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~ 321 (419)
++ . .....+++.+|++|+|+|++++.+.++...+..+...++|+++|+||+|+.... .....+++.+.
T Consensus 86 dF----------~-~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~-~~~v~~ei~~~ 153 (600)
T PRK05433 86 DF----------S-YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAAD-PERVKQEIEDV 153 (600)
T ss_pred HH----------H-HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCccc-HHHHHHHHHHH
Confidence 43 2 223467889999999999999988888777777777899999999999986432 22233444444
Q ss_pred cCCCCCCcEEEEeccCCCCHHHHHHHHHHHHhhc
Q psy17089 322 LNFLSFAMFNFISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 322 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
+.. ....++++||++|.|+++|++.|.+.++..
T Consensus 154 lg~-~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 154 IGI-DASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred hCC-CcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 332 223589999999999999999999887654
No 389
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.78 E-value=7.9e-18 Score=145.14 Aligned_cols=158 Identities=18% Similarity=0.123 Sum_probs=112.9
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
.+..+|+++|..|+||||++++|.......+.+ |.......+.+++..+.+||.+|+......| .
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~p----T~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w-----------~ 76 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIP----TIGFNIEEIKYKGYSLTIWDLGGQESFRPLW-----------K 76 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEE----ESSEEEEEEEETTEEEEEEEESSSGGGGGGG-----------G
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCc----ccccccceeeeCcEEEEEEeccccccccccc-----------e
Confidence 366899999999999999999999765433322 3334445677788999999999995544322 1
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHH-HHcCCCCCCcEEEE
Q psy17089 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIK-KKLNFLSFAMFNFI 333 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 333 (419)
.++..+|++|+|+|.++.....+. ..+..+.. .+.|+++++||.|+.+.....++.+.+. ..+.......++.+
T Consensus 77 ~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~ 156 (175)
T PF00025_consen 77 SYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSC 156 (175)
T ss_dssp GGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEE
T ss_pred eeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEee
Confidence 467889999999999986443332 23333322 4799999999999976554444444432 22222234678999
Q ss_pred eccCCCCHHHHHHHHHHHH
Q psy17089 334 SAIKLNNINSFMESINHVY 352 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~ 352 (419)
||++|.|+.+.+++|.+.+
T Consensus 157 sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 157 SAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp BTTTTBTHHHHHHHHHHHH
T ss_pred eccCCcCHHHHHHHHHhcC
Confidence 9999999999999998753
No 390
>PRK09866 hypothetical protein; Provisional
Probab=99.77 E-value=7e-17 Score=158.10 Aligned_cols=116 Identities=22% Similarity=0.218 Sum_probs=86.5
Q ss_pred eeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCC--cEEEEEEcccCCC
Q psy17089 230 KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGR--SLIVCVNKWDSII 307 (419)
Q Consensus 230 ~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~iiv~NK~Dl~~ 307 (419)
.+++++||||+..... ..+.+++ ...+..||++++|+|++.+.+..+..+++.+.+.+. |+++|+||+|+.+
T Consensus 230 ~QIIFVDTPGIhk~~~--~~L~k~M----~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~d 303 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--PHLQKML----NQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQD 303 (741)
T ss_pred CCEEEEECCCCCCccc--hHHHHHH----HHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCC
Confidence 5899999999976531 1123322 247899999999999999888899889998888774 9999999999975
Q ss_pred hhh--HHHHHHHHHHHcC--CCCCCcEEEEeccCCCCHHHHHHHHHHH
Q psy17089 308 HNQ--RKIIKNNIKKKLN--FLSFAMFNFISAIKLNNINSFMESINHV 351 (419)
Q Consensus 308 ~~~--~~~~~~~~~~~~~--~~~~~~~~~~SA~~g~gv~~l~~~i~~~ 351 (419)
... .+.+.+.+...+. ...+..++++||++|.|+++|++.|.+.
T Consensus 304 reeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 304 RNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred cccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 322 3334444433322 2345689999999999999999888763
No 391
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.77 E-value=2.7e-18 Score=153.69 Aligned_cols=158 Identities=28% Similarity=0.282 Sum_probs=120.7
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
....+|+++|.|+||||||+|.|++.+ ..+.+|++||..++.+.++++|.+++++|+||+....+.. +-+..+.+
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g----~grG~~vl 135 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSG----RGRGRQVL 135 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCC-ccccccCceecccccceEeecCceEEEEcCcccccCcccC----CCCcceee
Confidence 356799999999999999999999985 5788999999999999999999999999999997655321 22235567
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHHHHHHH--------------------------------------------HHH----
Q psy17089 260 KSILEANVVILLLDAQQNISAQDINIANF--------------------------------------------IYE---- 291 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~~~~~~--------------------------------------------~~~---- 291 (419)
..++.||++++|+|+.......+ .+.+. +.+
T Consensus 136 sv~R~ADlIiiVld~~~~~~~~~-~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~ 214 (365)
T COG1163 136 SVARNADLIIIVLDVFEDPHHRD-IIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIH 214 (365)
T ss_pred eeeccCCEEEEEEecCCChhHHH-HHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcc
Confidence 78899999999999986532110 01111 111
Q ss_pred -----------------------cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHHHHHHHH
Q psy17089 292 -----------------------SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348 (419)
Q Consensus 292 -----------------------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i 348 (419)
..+|.+.|+||+|+.+.+....+ .+. ...+++||+++.|+++|.+.|
T Consensus 215 nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l----~~~------~~~v~isa~~~~nld~L~e~i 284 (365)
T COG1163 215 NADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERL----ARK------PNSVPISAKKGINLDELKERI 284 (365)
T ss_pred cceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHH----Hhc------cceEEEecccCCCHHHHHHHH
Confidence 13799999999999874443322 211 278999999999999999999
Q ss_pred HHHHh
Q psy17089 349 NHVYD 353 (419)
Q Consensus 349 ~~~~~ 353 (419)
.+.+.
T Consensus 285 ~~~L~ 289 (365)
T COG1163 285 WDVLG 289 (365)
T ss_pred HHhhC
Confidence 88754
No 392
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.77 E-value=1e-17 Score=146.74 Aligned_cols=147 Identities=22% Similarity=0.181 Sum_probs=97.1
Q ss_pred CEEEEEcCCCCCHHHHHH-HHhCCC---CceecCCCCCC--ccceEEE--------EEECC--eEEEEEEcCCCCCcchh
Q psy17089 3 PVLVLVGRPNVGKSTLFN-RLTNSR---DALVANYPGLT--RDRHYGE--------GYIGK--KSFIIIDTGGFEPEVKK 66 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n-~l~~~~---~~~~~~~~~~t--~~~~~~~--------~~~~~--~~~~liDtpG~~~~~~~ 66 (419)
.||+++|++|||||||+. ++.+.. ..+...+.++. .+..... ..++| ..+.+|||||++..
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh---
Confidence 589999999999999996 555431 11122222222 1222111 13455 46679999999621
Q ss_pred hHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHH--HHHHHHHh--cCCCEEEEEeccCCCCC----------------
Q psy17089 67 GIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDK--LITNFLRK--SGQPIVLVINKSENINS---------------- 126 (419)
Q Consensus 67 ~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~--~~~~~l~~--~~~p~ilv~NK~Dl~~~---------------- 126 (419)
....+++++|++++|+|..+..+.... .|.+.++. .+.|+++|+||+|+...
T Consensus 80 --------~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~ 151 (195)
T cd01873 80 --------DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPI 151 (195)
T ss_pred --------hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhccccccccc
Confidence 122367899999999998875544432 34455544 36799999999998641
Q ss_pred ---Ccc-----hhHH-hcCCCCeEEEeeccCCCHHHHHHHHHHh
Q psy17089 127 ---SIS-----LDFY-ELGIGNPHIISALYGNGIKNFLENILTI 161 (419)
Q Consensus 127 ---~~~-----~~~~-~~~~~~~~~vSa~~~~~v~~l~~~i~~~ 161 (419)
+.+ ..+. ..+. .++++||++|.|++++|+.+.++
T Consensus 152 ~~~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 152 KNADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred ccCCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 222 2222 4555 79999999999999999998763
No 393
>PLN03126 Elongation factor Tu; Provisional
Probab=99.77 E-value=1.6e-17 Score=163.29 Aligned_cols=151 Identities=16% Similarity=0.195 Sum_probs=117.4
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCce---------------eeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCC
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENR---------------VITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~---------------~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 244 (419)
.+.++|+++|++++|||||+++|++... .......|+|.+.....+..++..+.+|||||+
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh---- 154 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH---- 154 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCH----
Confidence 3568999999999999999999995211 011234578888877777788889999999999
Q ss_pred cchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCc-EEEEEEcccCCChhh-HHHHHHHHHHHc
Q psy17089 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRS-LIVCVNKWDSIIHNQ-RKIIKNNIKKKL 322 (419)
Q Consensus 245 ~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~-~~~~~~~~~~~~ 322 (419)
++|. ..+...+..+|++++|+|+..+...+..+++..+...++| +++++||+|+.+... .+.+.+++...+
T Consensus 155 ------~~f~-~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l 227 (478)
T PLN03126 155 ------ADYV-KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELL 227 (478)
T ss_pred ------HHHH-HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHH
Confidence 4443 4456778899999999999999989999999999999998 778999999986443 333444666665
Q ss_pred CCC----CCCcEEEEeccCCCCH
Q psy17089 323 NFL----SFAMFNFISAIKLNNI 341 (419)
Q Consensus 323 ~~~----~~~~~~~~SA~~g~gv 341 (419)
... ...+++++||.+|.++
T Consensus 228 ~~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 228 SSYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred HhcCCCcCcceEEEEEccccccc
Confidence 543 2578999999998654
No 394
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.77 E-value=6.1e-18 Score=166.27 Aligned_cols=141 Identities=23% Similarity=0.304 Sum_probs=109.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceec------------------------------CCCCCCccceEEEEEECCeEEE
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVA------------------------------NYPGLTRDRHYGEGYIGKKSFI 53 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~~~~~ 53 (419)
+|+++|++|+|||||+++|+...+.+.. ..+++|++.....+.+++..+.
T Consensus 8 ~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i~ 87 (425)
T PRK12317 8 NLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYFT 87 (425)
T ss_pred EEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeEEE
Confidence 6999999999999999999855433211 1568999999999999999999
Q ss_pred EEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCC--CCCHhHHHHHHHHHhcCC-CEEEEEeccCCCCCCcc-
Q psy17089 54 IIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQ--GLVEQDKLITNFLRKSGQ-PIVLVINKSENINSSIS- 129 (419)
Q Consensus 54 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~--~~~~~~~~~~~~l~~~~~-p~ilv~NK~Dl~~~~~~- 129 (419)
+|||||+. .+...+...+..+|++++|+|+.+ +......+.+.++...+. |+++|+||+|+......
T Consensus 88 liDtpG~~---------~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 158 (425)
T PRK12317 88 IVDCPGHR---------DFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKR 158 (425)
T ss_pred EEECCCcc---------cchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHH
Confidence 99999986 333444555789999999999988 677777777777777775 68999999999753221
Q ss_pred --------hhHH-hcCC----CCeEEEeeccCCCHHH
Q psy17089 130 --------LDFY-ELGI----GNPHIISALYGNGIKN 153 (419)
Q Consensus 130 --------~~~~-~~~~----~~~~~vSa~~~~~v~~ 153 (419)
.+++ ..++ .+++++||++|.|+++
T Consensus 159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 1222 2333 3589999999999986
No 395
>COG2262 HflX GTPases [General function prediction only]
Probab=99.77 E-value=2.4e-17 Score=152.84 Aligned_cols=164 Identities=27% Similarity=0.356 Sum_probs=127.6
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEe-CeeEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN-NKKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
..-+.|+++|-+|+|||||+|+|++.. ..+.+..+.|.++....+.+. |.++.+-||-|+.+.-+ +..++.| ..+
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~-~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP-~~LV~AF--ksT 265 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGAD-VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLP-HPLVEAF--KST 265 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccC-eeccccccccccCceeEEEeCCCceEEEecCccCcccCC-hHHHHHH--HHH
Confidence 466799999999999999999999875 356688899999998888886 68999999999977653 3566777 567
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
+.....||++++|+|++++...+..+ ..+.+.+ ..+|+|+|.||+|++.+.. ....+... . ...+++|
T Consensus 266 LEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~~----~-~~~v~iS 337 (411)
T COG2262 266 LEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELERG----S-PNPVFIS 337 (411)
T ss_pred HHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh---hhhhhhhc----C-CCeEEEE
Confidence 78899999999999999985444433 3334444 5689999999999876544 11111111 1 1589999
Q ss_pred ccCCCCHHHHHHHHHHHHhhc
Q psy17089 335 AIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~~~ 355 (419)
|++|.|++.|.+.|.+.+...
T Consensus 338 A~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 338 AKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred eccCcCHHHHHHHHHHHhhhc
Confidence 999999999999999988744
No 396
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.76 E-value=2.1e-17 Score=167.25 Aligned_cols=154 Identities=22% Similarity=0.264 Sum_probs=116.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCcee--------c------CCCCCCccceEEEEEEC-----CeEEEEEEcCCCCCc
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALV--------A------NYPGLTRDRHYGEGYIG-----KKSFIIIDTGGFEPE 63 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~--------~------~~~~~t~~~~~~~~~~~-----~~~~~liDtpG~~~~ 63 (419)
++|+|+|+.++|||||+++|+...+.+. . ...++|.......+.|. +..+.+|||||+.
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~-- 85 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV-- 85 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH--
Confidence 6899999999999999999986432211 1 12366776666566553 4678999999998
Q ss_pred chhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc---hhHH-hcCC--
Q psy17089 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFY-ELGI-- 137 (419)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~---~~~~-~~~~-- 137 (419)
.+...+..++..+|++++|+|++++....+...+.++...+.|+++|+||+|+...... .++. .++.
T Consensus 86 -------dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~ 158 (600)
T PRK05433 86 -------DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDA 158 (600)
T ss_pred -------HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCc
Confidence 55566777899999999999999888777765556666678999999999998654322 2222 1233
Q ss_pred CCeEEEeeccCCCHHHHHHHHHHhcCCc
Q psy17089 138 GNPHIISALYGNGIKNFLENILTIELPY 165 (419)
Q Consensus 138 ~~~~~vSa~~~~~v~~l~~~i~~~~~~~ 165 (419)
.+++++||++|.|++++++.|.+.+|..
T Consensus 159 ~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 159 SDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 3589999999999999999999888754
No 397
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.76 E-value=7.8e-18 Score=163.82 Aligned_cols=151 Identities=26% Similarity=0.316 Sum_probs=111.1
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeee--------------------------------cCCCCccceeeeEeeEEeCe
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVIT--------------------------------YDTPGTTRDSIKSLFEYNNK 230 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~--------------------------------~~~~~~t~~~~~~~~~~~~~ 230 (419)
++|+++|++++|||||+++|+....... ....|.|.+.....+++++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 4899999999999999999973321110 11236778888888888889
Q ss_pred eEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCC-cEEEEEEcccCCChh
Q psy17089 231 KYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGR-SLIVCVNKWDSIIHN 309 (419)
Q Consensus 231 ~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~iiv~NK~Dl~~~~ 309 (419)
++.+|||||+ ++|. ..+...+..+|++++|+|+..+...++.+.+..+...+. ++++|+||+|+.+..
T Consensus 81 ~~~liDtPGh----------~~f~-~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~ 149 (406)
T TIGR02034 81 KFIVADTPGH----------EQYT-RNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYD 149 (406)
T ss_pred EEEEEeCCCH----------HHHH-HHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccch
Confidence 9999999998 4443 334467889999999999999988888877777777665 488899999997532
Q ss_pred --hHHHHHHHHHHHcCCC--CCCcEEEEeccCCCCHHHH
Q psy17089 310 --QRKIIKNNIKKKLNFL--SFAMFNFISAIKLNNINSF 344 (419)
Q Consensus 310 --~~~~~~~~~~~~~~~~--~~~~~~~~SA~~g~gv~~l 344 (419)
......+.+...+... ...+++++||++|.|++++
T Consensus 150 ~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 150 EEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 2233344444333222 2468999999999999864
No 398
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.76 E-value=3.8e-17 Score=149.69 Aligned_cols=114 Identities=28% Similarity=0.383 Sum_probs=87.3
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceee---------------ecC------CCCccceeeeEeeEEeCeeEEEEeCCCCC
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVI---------------TYD------TPGTTRDSIKSLFEYNNKKYILIDTAGIR 241 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~---------------~~~------~~~~t~~~~~~~~~~~~~~~~liDtpG~~ 241 (419)
.+|+++|++|+|||||+++|+...... +.+ ..+.+.......+++++.++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 579999999999999999998432111 111 11334445555778889999999999993
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCC
Q psy17089 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSII 307 (419)
Q Consensus 242 ~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 307 (419)
+ |. .....+++.+|++++|+|++.+...+...+++.+...++|+++++||+|+..
T Consensus 83 d----------f~-~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 D----------FS-EDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREG 137 (267)
T ss_pred H----------HH-HHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCC
Confidence 3 32 2344678899999999999998877777888888888999999999999854
No 399
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.76 E-value=7.7e-18 Score=166.30 Aligned_cols=155 Identities=25% Similarity=0.289 Sum_probs=112.3
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeec--------------------------------CCCCccceeeeEeeEE
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITY--------------------------------DTPGTTRDSIKSLFEY 227 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~--------------------------------~~~~~t~~~~~~~~~~ 227 (419)
...++|+++|++++|||||+++|+........ ...|+|.+.....+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 46699999999999999999999854321111 1225667777777777
Q ss_pred eCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcC-CcEEEEEEcccCC
Q psy17089 228 NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESG-RSLIVCVNKWDSI 306 (419)
Q Consensus 228 ~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~iiv~NK~Dl~ 306 (419)
++.++.+|||||+ +.|. ..+...+..+|++++|+|++.+...++.+.+..+...+ .++++|+||+|+.
T Consensus 105 ~~~~i~~iDTPGh----------~~f~-~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~ 173 (474)
T PRK05124 105 EKRKFIIADTPGH----------EQYT-RNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLV 173 (474)
T ss_pred CCcEEEEEECCCc----------HHHH-HHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccc
Confidence 8889999999998 3343 23345678999999999999988777766666666655 4688999999997
Q ss_pred Ch--hhHHHHHHHHHHHcCC---CCCCcEEEEeccCCCCHHHHH
Q psy17089 307 IH--NQRKIIKNNIKKKLNF---LSFAMFNFISAIKLNNINSFM 345 (419)
Q Consensus 307 ~~--~~~~~~~~~~~~~~~~---~~~~~~~~~SA~~g~gv~~l~ 345 (419)
+. .......+++...+.. ....+++++||++|.|++++.
T Consensus 174 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 174 DYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred cchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 42 2233444444443332 235789999999999998754
No 400
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.76 E-value=2e-17 Score=144.54 Aligned_cols=152 Identities=19% Similarity=0.212 Sum_probs=101.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+|+|++|+|||||+++|.... +...+..+..+.....+.+++. .+.+|||||+.... ......+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---------~~~~~~~ 70 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGE--FPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYE---------RLRPLSY 70 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcccceEEEEEEECCEEEEEEEEECCCChhcc---------ccchhhc
Confidence 589999999999999999998542 2222223333333445566664 46799999986322 1222356
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHh--cCCCEEEEEeccCCCCCC----------cc-----hhHH-hcCCCCe
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINSS----------IS-----LDFY-ELGIGNP 140 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~Dl~~~~----------~~-----~~~~-~~~~~~~ 140 (419)
.+++++++++|..+..+... ..+...++. .+.|+++|+||+|+.... .. ..+. ..+...+
T Consensus 71 ~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (187)
T cd04129 71 SKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKY 150 (187)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEE
Confidence 88999999999875433322 234444443 368999999999985421 11 1111 3444578
Q ss_pred EEEeeccCCCHHHHHHHHHHhcCCc
Q psy17089 141 HIISALYGNGIKNFLENILTIELPY 165 (419)
Q Consensus 141 ~~vSa~~~~~v~~l~~~i~~~~~~~ 165 (419)
+++||++|.|++++|+.+.+.....
T Consensus 151 ~e~Sa~~~~~v~~~f~~l~~~~~~~ 175 (187)
T cd04129 151 MECSALTGEGVDDVFEAATRAALLV 175 (187)
T ss_pred EEccCCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999766543
No 401
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.76 E-value=2.8e-17 Score=166.57 Aligned_cols=152 Identities=20% Similarity=0.314 Sum_probs=120.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC--ceecCCCCCCccceEEEEEE-CCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRD--ALVANYPGLTRDRHYGEGYI-GKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~--~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.|+++|++++|||||+++|+|... .......++|.+..+..... ++..+.+|||||++ .+...+...+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe---------~fi~~m~~g~ 72 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE---------KFLSNMLAGV 72 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH---------HHHHHHHHHh
Confidence 489999999999999999997532 22233458888877766654 56788999999996 6667777888
Q ss_pred HhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCE-EEEEeccCCCCCCcc-------hhHH-hcCC--CCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPI-VLVINKSENINSSIS-------LDFY-ELGI--GNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~-ilv~NK~Dl~~~~~~-------~~~~-~~~~--~~~~~vSa~~~~ 149 (419)
.++|++++|+|+.++..+++.+.+.+++..++|. ++|+||+|+.+.... .++. ..++ .+++++||++|.
T Consensus 73 ~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~ 152 (614)
T PRK10512 73 GGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGR 152 (614)
T ss_pred hcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Confidence 9999999999999999999988899988888874 799999999764322 1222 2232 478999999999
Q ss_pred CHHHHHHHHHHhcCC
Q psy17089 150 GIKNFLENILTIELP 164 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~ 164 (419)
|+++|++.|......
T Consensus 153 gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 153 GIDALREHLLQLPER 167 (614)
T ss_pred CCHHHHHHHHHhhcc
Confidence 999999999876554
No 402
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.76 E-value=2.9e-17 Score=165.63 Aligned_cols=155 Identities=19% Similarity=0.231 Sum_probs=124.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceec---------------CCCCCCccceEEEEEECCeEEEEEEcCCCCCcchh
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVA---------------NYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKK 66 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 66 (419)
.++|+|+|+.++|||||+++|+...+.+.. ...++|.......+.|.+..+.+|||||+.
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~----- 75 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHA----- 75 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHH-----
Confidence 368999999999999999999864332211 123688888888899999999999999997
Q ss_pred hHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc------hhHH-hcC---
Q psy17089 67 GIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS------LDFY-ELG--- 136 (419)
Q Consensus 67 ~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~------~~~~-~~~--- 136 (419)
.|......++..+|++++|+|+..+...+...++..+...++|.++|+||+|+...+.. .+++ ..+
T Consensus 76 ----DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~ 151 (594)
T TIGR01394 76 ----DFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADD 151 (594)
T ss_pred ----HHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccc
Confidence 56667788899999999999999888888888888888889999999999998754421 2222 111
Q ss_pred ---CCCeEEEeeccCC----------CHHHHHHHHHHhcCCc
Q psy17089 137 ---IGNPHIISALYGN----------GIKNFLENILTIELPY 165 (419)
Q Consensus 137 ---~~~~~~vSa~~~~----------~v~~l~~~i~~~~~~~ 165 (419)
..+++++||++|. |++.+++.|.+.+|..
T Consensus 152 e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 152 EQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred ccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 1267999999996 7999999999988764
No 403
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.76 E-value=4e-17 Score=145.89 Aligned_cols=160 Identities=16% Similarity=0.135 Sum_probs=106.1
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEe--CeeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN--NKKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
...+||+++|++|||||||+++++.... .....++...+.....+..+ ...+.+|||||+.++ ...+
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~----------~~~~ 75 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEF-EKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF----------GGLR 75 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhh----------hhhh
Confidence 3568999999999999999987765431 22222223333333333333 346778999998433 2122
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH--cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDIN-IANFIYE--SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
..+++.++++++|+|+++..++.+.. ++..+.. .+.|+++|+||+|+.+........ .+.. ..+..++++|
T Consensus 76 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~-~~~~----~~~~~~~e~S 149 (215)
T PTZ00132 76 -DGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQI-TFHR----KKNLQYYDIS 149 (215)
T ss_pred -HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHH-HHHH----HcCCEEEEEe
Confidence 35677899999999999887776653 3333332 478999999999986432111111 1111 1236899999
Q ss_pred ccCCCCHHHHHHHHHHHHhhcC
Q psy17089 335 AIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~~~~ 356 (419)
|++|.|+++.|.++++.+....
T Consensus 150 a~~~~~v~~~f~~ia~~l~~~p 171 (215)
T PTZ00132 150 AKSNYNFEKPFLWLARRLTNDP 171 (215)
T ss_pred CCCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999998876543
No 404
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.75 E-value=3.8e-17 Score=164.71 Aligned_cols=158 Identities=20% Similarity=0.296 Sum_probs=106.2
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCC-CccceeeeEeeEEe------------------CeeEEEEeCCCCC
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTP-GTTRDSIKSLFEYN------------------NKKYILIDTAGIR 241 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~-~~t~~~~~~~~~~~------------------~~~~~liDtpG~~ 241 (419)
+++.|+++|++|+|||||+++|.+.. .....+ +.|.+.....+..+ -..+.+|||||+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~--v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~- 81 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTA--VAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH- 81 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcc--cccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh-
Confidence 56789999999999999999998764 222232 23322211111110 013789999999
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhh-----------
Q psy17089 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQ----------- 310 (419)
Q Consensus 242 ~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~----------- 310 (419)
+.|...+. ..+..+|++++|+|++++...+....+..+...++|+++|+||+|+.....
T Consensus 82 ---------e~f~~~~~-~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~ 151 (586)
T PRK04004 82 ---------EAFTNLRK-RGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESI 151 (586)
T ss_pred ---------HHHHHHHH-HhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHH
Confidence 44433322 567889999999999998878888888888888999999999999853211
Q ss_pred -------HHHH---HHHHHHHcC--------------CCCCCcEEEEeccCCCCHHHHHHHHHHH
Q psy17089 311 -------RKII---KNNIKKKLN--------------FLSFAMFNFISAIKLNNINSFMESINHV 351 (419)
Q Consensus 311 -------~~~~---~~~~~~~~~--------------~~~~~~~~~~SA~~g~gv~~l~~~i~~~ 351 (419)
...+ ..++...+. .....+++++||++|.|+++|++.+...
T Consensus 152 ~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 152 EKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 0000 011111111 1234789999999999999999887543
No 405
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.75 E-value=2.5e-17 Score=140.39 Aligned_cols=147 Identities=30% Similarity=0.357 Sum_probs=106.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCC-CCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANY-PGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
||+++|++|||||||+++|.+.. + ...+ ++...+.....+..++. .+.+||++|++ ++.......+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~---------~~~~~~~~~~ 69 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE-F-PENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQE---------RFDSLRDIFY 69 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS-T-TSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSG---------GGHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhc-c-ccccccccccccccccccccccccccccccccccc---------cccccccccc
Confidence 79999999999999999999753 2 3333 33336666677777775 46699999987 3334445678
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh-c--CCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK-S--GQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~-~--~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.++|++++|+|..+..+... ..|.+.+.. . +.|+++|+||+|+...+.+ .++. ..+ .+++++||+++.|
T Consensus 70 ~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~ 148 (162)
T PF00071_consen 70 RNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG-VPYFEVSAKNGEN 148 (162)
T ss_dssp TTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT-SEEEEEBTTTTTT
T ss_pred cccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhC-CEEEEEECCCCCC
Confidence 99999999999876322222 223333332 2 4799999999999875544 2233 445 5899999999999
Q ss_pred HHHHHHHHHHhc
Q psy17089 151 IKNFLENILTIE 162 (419)
Q Consensus 151 v~~l~~~i~~~~ 162 (419)
+.++|..+.+.+
T Consensus 149 v~~~f~~~i~~i 160 (162)
T PF00071_consen 149 VKEIFQELIRKI 160 (162)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 406
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.75 E-value=4.4e-17 Score=143.30 Aligned_cols=165 Identities=19% Similarity=0.230 Sum_probs=109.9
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeec-CCCC---ccceeeeEeeEE-eCeeEEEEeCCCCCCCCcchHHHHHHHHH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITY-DTPG---TTRDSIKSLFEY-NNKKYILIDTAGIRRRNKTFEVIEKFSVI 256 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~-~~~~---~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~e~~~~~ 256 (419)
+++|+++|++|+|||||+|+|++....... ...+ +|.... .+.. ....+.+|||||+.+.... .+.+. .
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~~---~~~~l-~ 74 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT--PYPHPKFPNVTLWDLPGIGSTAFP---PDDYL-E 74 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce--eeecCCCCCceEEeCCCCCcccCC---HHHHH-H
Confidence 479999999999999999999985421111 1111 122211 1111 1347899999999765422 22331 1
Q ss_pred HHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhh-------------HHHHHHHHHHHcC
Q psy17089 257 KTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQ-------------RKIIKNNIKKKLN 323 (419)
Q Consensus 257 ~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~-------------~~~~~~~~~~~~~ 323 (419)
. ..+..+|+++++.| .+.+..+..+++.+.+.+.|+++|+||+|+..... .+.+.+.+...+.
T Consensus 75 -~-~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~ 150 (197)
T cd04104 75 -E-MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQ 150 (197)
T ss_pred -H-hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHH
Confidence 1 23567899888854 45778888899999988999999999999964211 1223333333333
Q ss_pred C--CCCCcEEEEecc--CCCCHHHHHHHHHHHHhhcC
Q psy17089 324 F--LSFAMFNFISAI--KLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 324 ~--~~~~~~~~~SA~--~g~gv~~l~~~i~~~~~~~~ 356 (419)
. ....++|.+|+. .+.|+..|.+.+...+++..
T Consensus 151 ~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 151 EAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred HcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 2 334689999998 67999999999999888754
No 407
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.75 E-value=5.2e-17 Score=146.34 Aligned_cols=113 Identities=19% Similarity=0.294 Sum_probs=92.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceec-----------------CCCCCCccceEEEEEECCeEEEEEEcCCCCCcchh
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVA-----------------NYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKK 66 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~-----------------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 66 (419)
+|+++|++|+|||||+++|+...+.+.. ...++|.......+.+.+.++.+|||||+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~----- 75 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHM----- 75 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCcc-----
Confidence 4899999999999999999864332110 122455566677888999999999999997
Q ss_pred hHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCC
Q psy17089 67 GIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENIN 125 (419)
Q Consensus 67 ~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~ 125 (419)
.+......+++.+|++++|+|+..+.......+.+.+.+.++|+++++||+|+..
T Consensus 76 ----~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~ 130 (237)
T cd04168 76 ----DFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAG 130 (237)
T ss_pred ----chHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence 4555667788999999999999988887778888888888999999999999864
No 408
>PRK10218 GTP-binding protein; Provisional
Probab=99.75 E-value=5.6e-17 Score=163.29 Aligned_cols=155 Identities=19% Similarity=0.232 Sum_probs=123.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceec---------------CCCCCCccceEEEEEECCeEEEEEEcCCCCCcchh
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVA---------------NYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKK 66 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 66 (419)
.++|+|+|+.++|||||+++|+...+.+.. ...++|.......+.+++..+.+|||||+.
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~----- 79 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHA----- 79 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcc-----
Confidence 479999999999999999999974433221 134677777778888999999999999998
Q ss_pred hHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc------hhHH-hcC---
Q psy17089 67 GIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS------LDFY-ELG--- 136 (419)
Q Consensus 67 ~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~------~~~~-~~~--- 136 (419)
.+...+..+++.+|++++|+|+..+.......++..+...++|.++|+||+|+...+.. .+.+ .++
T Consensus 80 ----df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~ 155 (607)
T PRK10218 80 ----DFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATD 155 (607)
T ss_pred ----hhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccc
Confidence 45566677899999999999999888888888888888889999999999998765432 2222 111
Q ss_pred ---CCCeEEEeeccCC----------CHHHHHHHHHHhcCCc
Q psy17089 137 ---IGNPHIISALYGN----------GIKNFLENILTIELPY 165 (419)
Q Consensus 137 ---~~~~~~vSa~~~~----------~v~~l~~~i~~~~~~~ 165 (419)
..+++++||++|. ++..|++.|.+.+|..
T Consensus 156 ~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 156 EQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred cccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 1258999999998 5889999999988754
No 409
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.75 E-value=3.2e-17 Score=146.13 Aligned_cols=148 Identities=18% Similarity=0.245 Sum_probs=98.8
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeee------------------cCCCCccceeeeEeeEEe-----CeeEEEEeCCCC
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVIT------------------YDTPGTTRDSIKSLFEYN-----NKKYILIDTAGI 240 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~------------------~~~~~~t~~~~~~~~~~~-----~~~~~liDtpG~ 240 (419)
+|+++|++|+|||||+++|+....... ....|++.......+.+. ...+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 699999999999999999986432111 011234443333333332 257889999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCC-------hh---h
Q psy17089 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSII-------HN---Q 310 (419)
Q Consensus 241 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~-------~~---~ 310 (419)
.++. .....++..+|++++|+|++.+.+....++++.+...+.|+++|+||+|++. .+ .
T Consensus 82 ~~f~-----------~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~~~ 150 (213)
T cd04167 82 VNFM-----------DEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFK 150 (213)
T ss_pred cchH-----------HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHHHH
Confidence 5442 2344678899999999999998887777777777777899999999999861 11 1
Q ss_pred HHHHHHHHHHHcCCCC----------CCcEEEEeccCCCCHH
Q psy17089 311 RKIIKNNIKKKLNFLS----------FAMFNFISAIKLNNIN 342 (419)
Q Consensus 311 ~~~~~~~~~~~~~~~~----------~~~~~~~SA~~g~gv~ 342 (419)
..+..+.+...+.... ..++++.||+.+.++.
T Consensus 151 l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 151 LRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 1222233332222111 1248899999988764
No 410
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.74 E-value=2.1e-17 Score=169.77 Aligned_cols=153 Identities=26% Similarity=0.324 Sum_probs=111.4
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeec--------------------------------CCCCccceeeeEeeEEe
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITY--------------------------------DTPGTTRDSIKSLFEYN 228 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~--------------------------------~~~~~t~~~~~~~~~~~ 228 (419)
..++|+++|++|+|||||+++|+........ ...|+|++.....++.+
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 5589999999999999999999864332221 11356666666677778
Q ss_pred CeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcC-CcEEEEEEcccCCC
Q psy17089 229 NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESG-RSLIVCVNKWDSII 307 (419)
Q Consensus 229 ~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~iiv~NK~Dl~~ 307 (419)
+.++.++||||+ +.|. ......+..+|++++|+|++.+...++.+.+..+...+ .++++|+||+|+.+
T Consensus 103 ~~~~~liDtPG~----------~~f~-~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 103 KRKFIVADTPGH----------EQYT-RNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVD 171 (632)
T ss_pred CceEEEEECCCh----------HHHH-HHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEeccccc
Confidence 889999999998 3342 33345678999999999999988777777777777666 56889999999974
Q ss_pred --hhhHHHHHHHHHHHcCCC--CCCcEEEEeccCCCCHHHH
Q psy17089 308 --HNQRKIIKNNIKKKLNFL--SFAMFNFISAIKLNNINSF 344 (419)
Q Consensus 308 --~~~~~~~~~~~~~~~~~~--~~~~~~~~SA~~g~gv~~l 344 (419)
.........++.+.+... ...+++++||++|.|++++
T Consensus 172 ~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~ 212 (632)
T PRK05506 172 YDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVTR 212 (632)
T ss_pred chhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCcccc
Confidence 222333444444333222 3367999999999999864
No 411
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.74 E-value=4.9e-17 Score=163.18 Aligned_cols=148 Identities=27% Similarity=0.336 Sum_probs=108.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCC-CCCccceEEEEEEC------------------CeEEEEEEcCCCCC
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYP-GLTRDRHYGEGYIG------------------KKSFIIIDTGGFEP 62 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~-~~t~~~~~~~~~~~------------------~~~~~liDtpG~~~ 62 (419)
.|.|+++|++|+|||||+|+|.+... ....+ ++|++.....+.++ ...+.+|||||++
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v--~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e- 80 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAV--AKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE- 80 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccc--ccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH-
Confidence 37899999999999999999998642 23333 35554333332221 0238899999987
Q ss_pred cchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCc--------------
Q psy17089 63 EVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSI-------------- 128 (419)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~-------------- 128 (419)
.+.......+..+|++++|+|++++...++.+.+++++..++|+++++||+|+.....
T Consensus 81 --------~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~ 152 (590)
T TIGR00491 81 --------AFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQ 152 (590)
T ss_pred --------hHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhh
Confidence 5555666678999999999999988888888888888888999999999999964210
Q ss_pred ---c-h-----------hHHhc--------------CCCCeEEEeeccCCCHHHHHHHHHH
Q psy17089 129 ---S-L-----------DFYEL--------------GIGNPHIISALYGNGIKNFLENILT 160 (419)
Q Consensus 129 ---~-~-----------~~~~~--------------~~~~~~~vSa~~~~~v~~l~~~i~~ 160 (419)
. . ++... +.-+++++||++|+|+++|+..+..
T Consensus 153 ~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 153 EIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 0 0 01111 1236799999999999999988753
No 412
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.74 E-value=3.6e-17 Score=160.33 Aligned_cols=152 Identities=24% Similarity=0.296 Sum_probs=116.6
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCce------------------------------eeecCCCCccceeeeEeeEEeCe
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENR------------------------------VITYDTPGTTRDSIKSLFEYNNK 230 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~------------------------------~~~~~~~~~t~~~~~~~~~~~~~ 230 (419)
+.++|+++|+.++|||||+.+|+..-. .......|+|.+.....+++++.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 568999999999999999999974100 00112347788887788888889
Q ss_pred eEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCC-------CHHHHHHHHHHHHcCCc-EEEEEEc
Q psy17089 231 KYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNI-------SAQDINIANFIYESGRS-LIVCVNK 302 (419)
Q Consensus 231 ~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~-------~~~~~~~~~~~~~~~~~-~iiv~NK 302 (419)
.+.|+||||+ ++|. ..+...+..+|++++|+|++.+. ..+..+.+..+...++| +|+|+||
T Consensus 86 ~i~lIDtPGh----------~~f~-~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNK 154 (446)
T PTZ00141 86 YFTIIDAPGH----------RDFI-KNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINK 154 (446)
T ss_pred EEEEEECCCh----------HHHH-HHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEc
Confidence 9999999998 4442 45557788999999999999875 35777888889889987 6789999
Q ss_pred ccCC----ChhhHHHHHHHHHHHcCCCC----CCcEEEEeccCCCCHHH
Q psy17089 303 WDSI----IHNQRKIIKNNIKKKLNFLS----FAMFNFISAIKLNNINS 343 (419)
Q Consensus 303 ~Dl~----~~~~~~~~~~~~~~~~~~~~----~~~~~~~SA~~g~gv~~ 343 (419)
+|.. +.....++.+++...+...+ ..+++++||.+|.|+.+
T Consensus 155 mD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 155 MDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 9943 23445666677776665443 37899999999999865
No 413
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.74 E-value=1e-16 Score=137.06 Aligned_cols=155 Identities=25% Similarity=0.347 Sum_probs=107.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC-CceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcc-hhhHHHHHHHHHHHHH-
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV-KKGIMHEMTKQTKQAI- 80 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~-~~~~~~~~~~~~~~~~- 80 (419)
.|+++|++|+|||||+|+|++.. ....+..+++|.+... ...++ .+.+|||||+.... +.+..+.+......++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 38999999999999999999532 2333444455554432 33333 89999999986431 1112223333333333
Q ss_pred --HhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc-------hhHHh--cCCCCeEEEeeccCC
Q psy17089 81 --IESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-------LDFYE--LGIGNPHIISALYGN 149 (419)
Q Consensus 81 --~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~-------~~~~~--~~~~~~~~vSa~~~~ 149 (419)
.+++++++++|...........+.+++...+.|+++|+||+|+...... ..... ....+++++||+++.
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~ 157 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQ 157 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCC
Confidence 4567899999998777777778888898888999999999999655443 11111 233478899999999
Q ss_pred CHHHHHHHHHHh
Q psy17089 150 GIKNFLENILTI 161 (419)
Q Consensus 150 ~v~~l~~~i~~~ 161 (419)
++.++++.|.+.
T Consensus 158 ~~~~l~~~l~~~ 169 (170)
T cd01876 158 GIDELRALIEKW 169 (170)
T ss_pred CHHHHHHHHHHh
Confidence 999999999864
No 414
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.74 E-value=8.3e-17 Score=142.97 Aligned_cols=112 Identities=20% Similarity=0.276 Sum_probs=85.9
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeee---------------cCCCCccceeeeEeeEEe----------CeeEEEEeCC
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVIT---------------YDTPGTTRDSIKSLFEYN----------NKKYILIDTA 238 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~---------------~~~~~~t~~~~~~~~~~~----------~~~~~liDtp 238 (419)
+|+++|+.++|||||+.+|+....... ....|.|.......+.+. +..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999985421111 112245554443344443 5678899999
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCC
Q psy17089 239 GIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSI 306 (419)
Q Consensus 239 G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~ 306 (419)
|+.++. ..+..+++.+|++++|+|++.+...+...+++.+...++|+++|+||+|+.
T Consensus 82 G~~~f~-----------~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFS-----------SEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CccccH-----------HHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 995543 345578899999999999999999998888888888899999999999985
No 415
>PRK12288 GTPase RsgA; Reviewed
Probab=99.74 E-value=2.8e-17 Score=155.24 Aligned_cols=140 Identities=24% Similarity=0.303 Sum_probs=100.0
Q ss_pred HHhCCEEEEEEeCCCCCCHhH-HHHHHHHHhcCCCEEEEEeccCCCCCCcc------hhHH-hcCCCCeEEEeeccCCCH
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRKSGQPIVLVINKSENINSSIS------LDFY-ELGIGNPHIISALYGNGI 151 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~------~~~~-~~~~~~~~~vSa~~~~~v 151 (419)
+.++|.+++|++....+.... ..++......++|.++|+||+|+...... ...+ ..+. +++++||+++.|+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~-~v~~vSA~tg~Gi 196 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGY-RVLMVSSHTGEGL 196 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCC-eEEEEeCCCCcCH
Confidence 578999999998665444322 22333455678999999999999765421 1222 4455 8899999999999
Q ss_pred HHHHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCC-------ccceeeeEe
Q psy17089 152 KNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPG-------TTRDSIKSL 224 (419)
Q Consensus 152 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~-------~t~~~~~~~ 224 (419)
++|++.+.. ..++++|.||||||||+|+|++.....++..++ ||.......
T Consensus 197 deL~~~L~~----------------------ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~ 254 (347)
T PRK12288 197 EELEAALTG----------------------RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYH 254 (347)
T ss_pred HHHHHHHhh----------------------CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEE
Confidence 999988863 127899999999999999999987766666553 444433332
Q ss_pred eEEeCeeEEEEeCCCCCCCCc
Q psy17089 225 FEYNNKKYILIDTAGIRRRNK 245 (419)
Q Consensus 225 ~~~~~~~~~liDtpG~~~~~~ 245 (419)
+. ....|+||||+..+..
T Consensus 255 --l~-~~~~liDTPGir~~~l 272 (347)
T PRK12288 255 --FP-HGGDLIDSPGVREFGL 272 (347)
T ss_pred --ec-CCCEEEECCCCCcccC
Confidence 22 2346999999987764
No 416
>KOG1707|consensus
Probab=99.74 E-value=3.3e-16 Score=150.08 Aligned_cols=143 Identities=20% Similarity=0.200 Sum_probs=91.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCC----CCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYP----GLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
+|+++|+.|||||||+-+|+... ++...| -+++- ..+.-......++||+.-. +-.......
T Consensus 11 RIvliGD~G~GKtSLImSL~~ee--f~~~VP~rl~~i~IP---advtPe~vpt~ivD~ss~~---------~~~~~l~~E 76 (625)
T KOG1707|consen 11 RIVLIGDEGVGKTSLIMSLLEEE--FVDAVPRRLPRILIP---ADVTPENVPTSIVDTSSDS---------DDRLCLRKE 76 (625)
T ss_pred EEEEECCCCccHHHHHHHHHhhh--ccccccccCCccccC---CccCcCcCceEEEeccccc---------chhHHHHHH
Confidence 79999999999999999999753 222222 23332 2233344568899998654 223455667
Q ss_pred HHhCCEEEEEEeCCCC--CCHhHHHHHHHHHh-----cCCCEEEEEeccCCCCCCcc--hh-HH--hc---CCCCeEEEe
Q psy17089 80 IIESDIIIFIVDGRQG--LVEQDKLITNFLRK-----SGQPIVLVINKSENINSSIS--LD-FY--EL---GIGNPHIIS 144 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~--~~~~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~--~~-~~--~~---~~~~~~~vS 144 (419)
++.||++.+|++.+++ .......|+-+++. .+.|+|+|+||+|+...... .. .. .. .....+++|
T Consensus 77 irkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecS 156 (625)
T KOG1707|consen 77 IRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECS 156 (625)
T ss_pred HhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhh
Confidence 8999999999976653 23334556666665 36799999999998765433 11 10 01 122346677
Q ss_pred eccCCCHHHHHHHHHH
Q psy17089 145 ALYGNGIKNFLENILT 160 (419)
Q Consensus 145 a~~~~~v~~l~~~i~~ 160 (419)
|++-.++.++|.+..+
T Consensus 157 A~~~~n~~e~fYyaqK 172 (625)
T KOG1707|consen 157 ALTLANVSELFYYAQK 172 (625)
T ss_pred hhhhhhhHhhhhhhhh
Confidence 7776676666655543
No 417
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.74 E-value=5.2e-17 Score=146.72 Aligned_cols=165 Identities=21% Similarity=0.301 Sum_probs=124.0
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEE-eCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHH
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY-NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (419)
-|+++|.||+|||||+++++..+ ..+.+||+||..+.-..+.. .+..+++-|.||+.+..+..- -...+.++++
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak-PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~----GLG~~FLrHI 235 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK-PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGV----GLGLRFLRHI 235 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC-CcccCCccccccCcccEEEecCCCcEEEecCcccccccccCC----CccHHHHHHH
Confidence 58999999999999999999875 57889999999999888886 456799999999977653221 1235667999
Q ss_pred hhcCEEEEEecCCCCCC---HHHHH-HHHHHHH-----cCCcEEEEEEcccCC-ChhhHHHHHHHHHHHcCCCCCCcEEE
Q psy17089 263 LEANVVILLLDAQQNIS---AQDIN-IANFIYE-----SGRSLIVCVNKWDSI-IHNQRKIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 263 ~~ad~~i~v~d~~~~~~---~~~~~-~~~~~~~-----~~~~~iiv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (419)
.++.+.++|+|++.... .++.+ +...+.. .++|.++|+||+|+. ..+..+...+.+.+... +...++
T Consensus 236 ERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~---~~~~~~ 312 (369)
T COG0536 236 ERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALG---WEVFYL 312 (369)
T ss_pred HhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcC---CCccee
Confidence 99999999999986432 34443 3333333 579999999999954 44554555555554333 233334
Q ss_pred EeccCCCCHHHHHHHHHHHHhhcC
Q psy17089 333 ISAIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~~~ 356 (419)
+||.++.|+++|...+.+.+....
T Consensus 313 ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 313 ISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred eehhcccCHHHHHHHHHHHHHHhh
Confidence 999999999999999998877654
No 418
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.74 E-value=1.4e-17 Score=149.05 Aligned_cols=155 Identities=26% Similarity=0.272 Sum_probs=119.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhC
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 83 (419)
.+++||.|+||||||+|+|++.. +.+.++++||..+..+.+.++|.+++++|+||+.+...... ..-.++...+++|
T Consensus 65 ~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~--grG~~vlsv~R~A 141 (365)
T COG1163 65 TVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGR--GRGRQVLSVARNA 141 (365)
T ss_pred EEEEEcCCCccHHHHHHHHhCCC-ccccccCceecccccceEeecCceEEEEcCcccccCcccCC--CCcceeeeeeccC
Confidence 68999999999999999999875 45889999999999999999999999999999975431111 1124567789999
Q ss_pred CEEEEEEeCCCCCCHhHHHHHHHHHhc-----------------------------------------------------
Q psy17089 84 DIIIFIVDGRQGLVEQDKLITNFLRKS----------------------------------------------------- 110 (419)
Q Consensus 84 d~il~v~d~~~~~~~~~~~~~~~l~~~----------------------------------------------------- 110 (419)
|++++|+|....... -..+.++|...
T Consensus 142 DlIiiVld~~~~~~~-~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 142 DLIIIVLDVFEDPHH-RDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CEEEEEEecCCChhH-HHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999997743322 12233333321
Q ss_pred ------------------CCCEEEEEeccCCCCCCcchhHHhcCCCCeEEEeeccCCCHHHHHHHHHHhcCC
Q psy17089 111 ------------------GQPIVLVINKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLENILTIELP 164 (419)
Q Consensus 111 ------------------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~vSa~~~~~v~~l~~~i~~~~~~ 164 (419)
.+|.+.|+||+|+...+......... +.+++||+.+.|+++|.+.|++.+.-
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~l 290 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP--NSVPISAKKGINLDELKERIWDVLGL 290 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCe
Confidence 16999999999999844433333222 88999999999999999999987643
No 419
>KOG0073|consensus
Probab=99.74 E-value=1.6e-16 Score=127.80 Aligned_cols=158 Identities=18% Similarity=0.188 Sum_probs=117.9
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+.++|.++|..|+||||++++|++.....+++ |..+...+..+++.++.+||..|+.... +.| ..
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~p----t~gf~Iktl~~~~~~L~iwDvGGq~~lr------~~W-----~n 79 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTISP----TLGFQIKTLEYKGYTLNIWDVGGQKTLR------SYW-----KN 79 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccccCC----ccceeeEEEEecceEEEEEEcCCcchhH------HHH-----HH
Confidence 57999999999999999999999987544444 3445557788899999999999995443 222 26
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHH-HHHHH---cCCcEEEEEEcccCCChhhHHHHH--HHHHHHcCCCCCCcEEEE
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIA-NFIYE---SGRSLIVCVNKWDSIIHNQRKIIK--NNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~-~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 333 (419)
|+..+|+.|+|+|.+++...++- ..+ +.+.+ .+.|+++++||.|+.+.-..+++. ..+.+.+ ....++++-|
T Consensus 80 YfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~-ks~~~~l~~c 158 (185)
T KOG0073|consen 80 YFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELA-KSHHWRLVKC 158 (185)
T ss_pred hhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhc-cccCceEEEE
Confidence 88999999999999987655552 222 22222 679999999999997543333333 2334443 3345799999
Q ss_pred eccCCCCHHHHHHHHHHHHhh
Q psy17089 334 SAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~ 354 (419)
||.+|+++.+-+++++..+.+
T Consensus 159 s~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 159 SAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred eccccccHHHHHHHHHHHHHH
Confidence 999999999999999987765
No 420
>KOG0462|consensus
Probab=99.73 E-value=5.7e-17 Score=153.93 Aligned_cols=164 Identities=22% Similarity=0.244 Sum_probs=132.3
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCcee--------------eecCCCCccceeeeEeeEEeC---eeEEEEeCCCCCC
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRV--------------ITYDTPGTTRDSIKSLFEYNN---KKYILIDTAGIRR 242 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~---~~~~liDtpG~~~ 242 (419)
++-.+++++.+...|||||..+|+....+ .+....|+|+......+.+.+ ..+.+|||||+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 45678999999999999999999843211 133566999988888877766 6777899999988
Q ss_pred CCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHc
Q psy17089 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKL 322 (419)
Q Consensus 243 ~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~ 322 (419)
++ .+..+.+..+|++|+|+|++++...|...-+..+.+.+..+|.|+||+|+... +.+....++.+.+
T Consensus 138 Fs-----------~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~a-dpe~V~~q~~~lF 205 (650)
T KOG0462|consen 138 FS-----------GEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSA-DPERVENQLFELF 205 (650)
T ss_pred cc-----------ceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCC-CHHHHHHHHHHHh
Confidence 87 22234566699999999999999999988888888899999999999999653 3455667777777
Q ss_pred CCCCCCcEEEEeccCCCCHHHHHHHHHHHHhhcC
Q psy17089 323 NFLSFAMFNFISAIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 323 ~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 356 (419)
.... .+++.+|||+|.|+++++++|.+.++...
T Consensus 206 ~~~~-~~~i~vSAK~G~~v~~lL~AII~rVPpP~ 238 (650)
T KOG0462|consen 206 DIPP-AEVIYVSAKTGLNVEELLEAIIRRVPPPK 238 (650)
T ss_pred cCCc-cceEEEEeccCccHHHHHHHHHhhCCCCC
Confidence 7554 48899999999999999999999887654
No 421
>KOG1489|consensus
Probab=99.73 E-value=2.5e-17 Score=146.85 Aligned_cols=155 Identities=23% Similarity=0.282 Sum_probs=118.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe-EEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK-SFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
..|.+||-||+|||||+|+|+..+. .+.+|++||..++.+.+.+++. .+.+-|.||+.+.. +..+-+-..+++.+.
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GA--h~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGA--HMNKGLGYKFLRHIE 273 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccc--cccCcccHHHHHHHH
Confidence 4688999999999999999998765 5899999999999999888775 49999999998653 222345567788899
Q ss_pred hCCEEEEEEeCCCCCCHhH----HHHHHHHHh-----cCCCEEEEEeccCCCCCCcc--hhHH-hcCCCCeEEEeeccCC
Q psy17089 82 ESDIIIFIVDGRQGLVEQD----KLITNFLRK-----SGQPIVLVINKSENINSSIS--LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~~----~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~--~~~~-~~~~~~~~~vSa~~~~ 149 (419)
.|+..+||+|......... ..+..+|.. .++|.++|+||+|+...+.. .++. .++-..++++||+.++
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvsA~~~e 353 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVSAKSGE 353 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCCcEEEeeecccc
Confidence 9999999999876522121 223333332 47899999999999644433 3333 3343358999999999
Q ss_pred CHHHHHHHHHH
Q psy17089 150 GIKNFLENILT 160 (419)
Q Consensus 150 ~v~~l~~~i~~ 160 (419)
|+++|++.|.+
T Consensus 354 gl~~ll~~lr~ 364 (366)
T KOG1489|consen 354 GLEELLNGLRE 364 (366)
T ss_pred chHHHHHHHhh
Confidence 99999998875
No 422
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=8.3e-17 Score=154.13 Aligned_cols=162 Identities=22% Similarity=0.298 Sum_probs=129.5
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEe---CeeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN---NKKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
+++-|+++|+...|||||+..+-+... .....-|.|++...+++..+ ...+.++||||+ |.|..++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~V-a~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH----------eAFt~mR 72 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNV-AAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH----------EAFTAMR 72 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCcc-ccccCCceeeEeeeEEEEeccCCCceEEEEcCCcH----------HHHHHHH
Confidence 567899999999999999999987754 34466789999988888874 468999999999 7777676
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHH-c---CCCCCCcEEEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKK-L---NFLSFAMFNFI 333 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~ 333 (419)
+ +...-+|+++||+|++++...|..+.++.++..+.|+++++||+|..+.+- .....++.+. + .+.+...++++
T Consensus 73 a-RGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np-~~v~~el~~~gl~~E~~gg~v~~Vpv 150 (509)
T COG0532 73 A-RGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANP-DKVKQELQEYGLVPEEWGGDVIFVPV 150 (509)
T ss_pred h-cCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCH-HHHHHHHHHcCCCHhhcCCceEEEEe
Confidence 6 566779999999999999999999999999999999999999999975432 2222222211 1 12234689999
Q ss_pred eccCCCCHHHHHHHHHHHHhhc
Q psy17089 334 SAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
||++|.|+++|++.+.-..+..
T Consensus 151 SA~tg~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 151 SAKTGEGIDELLELILLLAEVL 172 (509)
T ss_pred eccCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999888765543
No 423
>PRK13796 GTPase YqeH; Provisional
Probab=99.73 E-value=7.6e-17 Score=154.27 Aligned_cols=145 Identities=35% Similarity=0.444 Sum_probs=105.5
Q ss_pred HHHHHHhCC-EEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc----hhH----H-hcCC--CCeEEE
Q psy17089 76 TKQAIIESD-IIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDF----Y-ELGI--GNPHII 143 (419)
Q Consensus 76 ~~~~~~~~d-~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~----~~~----~-~~~~--~~~~~v 143 (419)
....+..++ +|++|+|+.+........+.+.. .++|+++|+||+|+...... .++ . ..+. ..++.+
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~v 139 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLI 139 (365)
T ss_pred HHHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEE
Confidence 455667666 99999998874444434444433 27899999999999754321 222 1 2343 368999
Q ss_pred eeccCCCHHHHHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCC-----ceeeecCCCCccc
Q psy17089 144 SALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGE-----NRVITYDTPGTTR 218 (419)
Q Consensus 144 Sa~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~-----~~~~~~~~~~~t~ 218 (419)
||+++.|++++++.+.+.. ...++.++|.+|||||||+|+|++. ....+++.||||.
T Consensus 140 SAk~g~gI~eL~~~I~~~~------------------~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~ 201 (365)
T PRK13796 140 SAQKGHGIDELLEAIEKYR------------------EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTL 201 (365)
T ss_pred ECCCCCCHHHHHHHHHHhc------------------CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccc
Confidence 9999999999999997642 1247999999999999999999853 2345789999999
Q ss_pred eeeeEeeEEeCeeEEEEeCCCCCCC
Q psy17089 219 DSIKSLFEYNNKKYILIDTAGIRRR 243 (419)
Q Consensus 219 ~~~~~~~~~~~~~~~liDtpG~~~~ 243 (419)
+.....+. ....++||||+...
T Consensus 202 ~~~~~~l~---~~~~l~DTPGi~~~ 223 (365)
T PRK13796 202 DKIEIPLD---DGSFLYDTPGIIHR 223 (365)
T ss_pred eeEEEEcC---CCcEEEECCCcccc
Confidence 87655442 34589999999644
No 424
>PRK12736 elongation factor Tu; Reviewed
Probab=99.73 E-value=1.1e-16 Score=155.26 Aligned_cols=153 Identities=19% Similarity=0.193 Sum_probs=118.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCc---------------eecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDA---------------LVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKG 67 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 67 (419)
.+|+++|+.++|||||+++|++.... ......++|++.....+..++..+.+|||||+.
T Consensus 13 ~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~------ 86 (394)
T PRK12736 13 VNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA------ 86 (394)
T ss_pred eEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH------
Confidence 36999999999999999999863110 011245788888766666678899999999986
Q ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCC-EEEEEeccCCCCCCcc--------hhHH-hcCC
Q psy17089 68 IMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQP-IVLVINKSENINSSIS--------LDFY-ELGI 137 (419)
Q Consensus 68 ~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p-~ilv~NK~Dl~~~~~~--------~~~~-~~~~ 137 (419)
++...+...+..+|++++|+|+..+...++.+++.++...++| +++|+||+|+....+. .+++ ..++
T Consensus 87 ---~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 87 ---DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred ---HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 5666667778899999999999998888988999999888998 5788999999754332 1111 2232
Q ss_pred ----CCeEEEeeccCC--------CHHHHHHHHHHhcCC
Q psy17089 138 ----GNPHIISALYGN--------GIKNFLENILTIELP 164 (419)
Q Consensus 138 ----~~~~~vSa~~~~--------~v~~l~~~i~~~~~~ 164 (419)
.+++++||++|. ++.+|++.+.+.++.
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~ 202 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPT 202 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCC
Confidence 378999999983 578899998887764
No 425
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.73 E-value=1.5e-16 Score=146.78 Aligned_cols=113 Identities=27% Similarity=0.364 Sum_probs=86.6
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceee-----ec------C------CCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcc
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVI-----TY------D------TPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKT 246 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~-----~~------~------~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 246 (419)
+|+++|++|+|||||+++|+...... +. + ..+.+.......+.+++..+.+|||||+.+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~---- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYAD---- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHH----
Confidence 48999999999999999997532111 10 0 113344445566777888999999999832
Q ss_pred hHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCC
Q psy17089 247 FEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSII 307 (419)
Q Consensus 247 ~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 307 (419)
|. .....+++.+|++++|+|++.+...+...+++.+...++|.++|+||+|+..
T Consensus 77 ------f~-~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~ 130 (268)
T cd04170 77 ------FV-GETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRER 130 (268)
T ss_pred ------HH-HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCC
Confidence 22 3345678899999999999998888888888888889999999999999874
No 426
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.73 E-value=9e-17 Score=140.98 Aligned_cols=144 Identities=17% Similarity=0.119 Sum_probs=93.1
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEe-----C--eeEEEEeCCCCCCCCcchHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN-----N--KKYILIDTAGIRRRNKTFEVIEKFSV 255 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-----~--~~~~liDtpG~~~~~~~~~~~e~~~~ 255 (419)
+||+++|.+|||||||++++.+... .....+++..+.....+.++ + ..+.+|||+|+ ++|..
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f-~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~----------e~~~~ 69 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQV-LGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGS----------ESVKS 69 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCc----------hhHHH
Confidence 4899999999999999999997642 22222333323333333432 2 35778999999 44443
Q ss_pred HHHHHHHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH----------------------cCCcEEEEEEcccCCChhhHH
Q psy17089 256 IKTLKSILEANVVILLLDAQQNISAQDIN-IANFIYE----------------------SGRSLIVCVNKWDSIIHNQRK 312 (419)
Q Consensus 256 ~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~----------------------~~~~~iiv~NK~Dl~~~~~~~ 312 (419)
.+ ..+++.+|++|+|+|++++.+++... |+..+.. .+.|+++|+||+|+.+.....
T Consensus 70 l~-~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~ 148 (202)
T cd04102 70 TR-AVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESS 148 (202)
T ss_pred HH-HHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccc
Confidence 33 36889999999999999998888764 5555533 258999999999996542111
Q ss_pred H--HHHHHHHHcCCCCCCcEEEEeccCCC
Q psy17089 313 I--IKNNIKKKLNFLSFAMFNFISAIKLN 339 (419)
Q Consensus 313 ~--~~~~~~~~~~~~~~~~~~~~SA~~g~ 339 (419)
. .... ...++...+.+.++.+++.+.
T Consensus 149 ~~~~~~~-~~~ia~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 149 GNLVLTA-RGFVAEQGNAEEINLNCTNGR 176 (202)
T ss_pred hHHHhhH-hhhHHHhcCCceEEEecCCcc
Confidence 1 1111 111222234677888888654
No 427
>KOG0088|consensus
Probab=99.73 E-value=1.9e-18 Score=137.70 Aligned_cols=153 Identities=20% Similarity=0.140 Sum_probs=110.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
.|||+++|..-||||||.-+++..+ +.-....+....+....+.+.+. .+.||||+|++ +|...-.-+
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~Enk-Fn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQE---------rfHALGPIY 82 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENK-FNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQE---------RFHALGPIY 82 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhh-cchhhHHHHHHHHhhcccccccceeeeeeeeccchH---------hhhccCceE
Confidence 4799999999999999999998653 21111111122234445555554 56699999998 777777778
Q ss_pred HHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc----hhHH--hcCCCCeEEEeeccCC
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS----LDFY--ELGIGNPHIISALYGN 149 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~----~~~~--~~~~~~~~~vSa~~~~ 149 (419)
+++++++++|+|.+++.+.+. +.|...|+. ..+-+++|+||+|+...+.+ .+.+ ..|. .++++||+++.
T Consensus 83 YRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA-~y~eTSAk~N~ 161 (218)
T KOG0088|consen 83 YRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGA-LYMETSAKDNV 161 (218)
T ss_pred EeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhch-hheeccccccc
Confidence 999999999999887544443 444444554 35678999999999887766 2333 2343 78999999999
Q ss_pred CHHHHHHHHHHhcCCc
Q psy17089 150 GIKNFLENILTIELPY 165 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~~ 165 (419)
|+.++|+.+...+.+.
T Consensus 162 Gi~elFe~Lt~~MiE~ 177 (218)
T KOG0088|consen 162 GISELFESLTAKMIEH 177 (218)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999988766554
No 428
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=1.5e-16 Score=139.92 Aligned_cols=179 Identities=13% Similarity=0.134 Sum_probs=128.1
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
..+++|.++|.+|+|||||+|+|+..+...++..+.++.........++++.++||||||+.+....+ .++ .....
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D---~~~-r~~~~ 112 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKD---AEH-RQLYR 112 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhh---HHH-HHHHH
Confidence 47799999999999999999999976666665554444433334455678899999999998866322 112 23455
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHHHHHHHHHH--cCCcEEEEEEcccCCChh------------hH----HHHHHHHHHH
Q psy17089 260 KSILEANVVILLLDAQQNISAQDINIANFIYE--SGRSLIVCVNKWDSIIHN------------QR----KIIKNNIKKK 321 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~NK~Dl~~~~------------~~----~~~~~~~~~~ 321 (419)
.++.+.|++++++|+.++.-..+..+++.+.- .+.++++|+|.+|...+. .. ++..+.+.+.
T Consensus 113 d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 113 DYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred HHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 78899999999999999877777777766554 458999999999986431 11 1122223333
Q ss_pred cCCCCCCcEEEEeccCCCCHHHHHHHHHHHHhhcCCCCCHHHH
Q psy17089 322 LNFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIHLSTSRI 364 (419)
Q Consensus 322 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l 364 (419)
+.. -.|++..|+..+.|+++|...+...++...+..-...+
T Consensus 193 ~q~--V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs~~a~~~ 233 (296)
T COG3596 193 FQE--VKPVVAVSGRLPWGLKELVRALITALPVEARSPLAARL 233 (296)
T ss_pred Hhh--cCCeEEeccccCccHHHHHHHHHHhCcccccchhhhhh
Confidence 332 34889999999999999999999998866554443333
No 429
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=5.7e-17 Score=142.56 Aligned_cols=162 Identities=14% Similarity=0.148 Sum_probs=127.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhC
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 83 (419)
+|+++|.+|+|||||+|+|++.....++..+.+|....+....+++..+++|||||+++.. ....+....+..++...
T Consensus 41 nvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~--~~D~~~r~~~~d~l~~~ 118 (296)
T COG3596 41 NVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGK--DKDAEHRQLYRDYLPKL 118 (296)
T ss_pred eEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccch--hhhHHHHHHHHHHhhhc
Confidence 5779999999999999999987666677776667666666777788999999999998653 22335777889999999
Q ss_pred CEEEEEEeCCCCCCHhHHHHHHHHHh--cCCCEEEEEeccCCCCCCcc------------hhHH----------hcCCCC
Q psy17089 84 DIIIFIVDGRQGLVEQDKLITNFLRK--SGQPIVLVINKSENINSSIS------------LDFY----------ELGIGN 139 (419)
Q Consensus 84 d~il~v~d~~~~~~~~~~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~------------~~~~----------~~~~~~ 139 (419)
|++++++++.++....+..+++-+.. .++++++++|.+|...+-.. .++. -....+
T Consensus 119 DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~p 198 (296)
T COG3596 119 DLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKP 198 (296)
T ss_pred cEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999998888888777666554 35899999999998776311 1111 123457
Q ss_pred eEEEeeccCCCHHHHHHHHHHhcCCcch
Q psy17089 140 PHIISALYGNGIKNFLENILTIELPYKK 167 (419)
Q Consensus 140 ~~~vSa~~~~~v~~l~~~i~~~~~~~~~ 167 (419)
++.+|...++|++.+..++...+|.+..
T Consensus 199 V~~~~~r~~wgl~~l~~ali~~lp~e~r 226 (296)
T COG3596 199 VVAVSGRLPWGLKELVRALITALPVEAR 226 (296)
T ss_pred eEEeccccCccHHHHHHHHHHhCccccc
Confidence 7888889999999999999999997654
No 430
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.73 E-value=4.5e-17 Score=152.91 Aligned_cols=166 Identities=27% Similarity=0.363 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcch---hHH-hcCCCCeEEEeec
Q psy17089 71 EMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSISL---DFY-ELGIGNPHIISAL 146 (419)
Q Consensus 71 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~---~~~-~~~~~~~~~vSa~ 146 (419)
.+..+....+...|+|+.|+|++++.......+.+++. ++|.++|+||+|+....... .++ .......+.+|++
T Consensus 23 k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~--~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~ 100 (322)
T COG1161 23 KAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK--EKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAK 100 (322)
T ss_pred HHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHc--cCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEee
Confidence 56677788899999999999999998888888888887 45669999999999877762 222 2222267889999
Q ss_pred cCCCHHHHHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeE
Q psy17089 147 YGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFE 226 (419)
Q Consensus 147 ~~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~ 226 (419)
.+.+...+..++.......-... ...-......+++++|.||||||||||+|.+...+.+++.||+|.........
T Consensus 101 ~~~~~~~i~~~~~~~~~~~i~~~----~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~ 176 (322)
T COG1161 101 SRQGGKKIRKALEKLSEEKIKRL----KKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD 176 (322)
T ss_pred cccCccchHHHHHHHHHHHHHHH----hhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC
Confidence 98888777754443221110000 00000124578999999999999999999999999999999999987665543
Q ss_pred EeCeeEEEEeCCCCCCCCc
Q psy17089 227 YNNKKYILIDTAGIRRRNK 245 (419)
Q Consensus 227 ~~~~~~~liDtpG~~~~~~ 245 (419)
..+.|+||||+.....
T Consensus 177 ---~~i~LlDtPGii~~~~ 192 (322)
T COG1161 177 ---DGIYLLDTPGIIPPKF 192 (322)
T ss_pred ---CCeEEecCCCcCCCCc
Confidence 4599999999976653
No 431
>KOG0091|consensus
Probab=99.73 E-value=5.4e-17 Score=130.21 Aligned_cols=149 Identities=19% Similarity=0.184 Sum_probs=114.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEEC-C--eEEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG-K--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
++++++|++-||||||+..++..+-+.. ..|++..|...+.++.. | .++++|||+|++ +|+..+..+
T Consensus 9 frlivigdstvgkssll~~ft~gkfael-sdptvgvdffarlie~~pg~riklqlwdtagqe---------rfrsitksy 78 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAEL-SDPTVGVDFFARLIELRPGYRIKLQLWDTAGQE---------RFRSITKSY 78 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCccccc-CCCccchHHHHHHHhcCCCcEEEEEEeeccchH---------HHHHHHHHH
Confidence 5899999999999999999987653322 34677777776666654 3 467799999998 899999999
Q ss_pred HHhCCEEEEEEeCCCCCCHhHHHHHHHHHh----cC---C-CEEEEEeccCCCCCCcc----hhHH--hcCCCCeEEEee
Q psy17089 80 IIESDIIIFIVDGRQGLVEQDKLITNFLRK----SG---Q-PIVLVINKSENINSSIS----LDFY--ELGIGNPHIISA 145 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~~~~~~~l~~----~~---~-p~ilv~NK~Dl~~~~~~----~~~~--~~~~~~~~~vSa 145 (419)
++++=++++|+|.++. .....+..|+.+ .. + -+.||+.|+|+...+.+ .+.+ .+|. .++++||
T Consensus 79 yrnsvgvllvyditnr--~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM-~FVETSa 155 (213)
T KOG0091|consen 79 YRNSVGVLLVYDITNR--ESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGM-AFVETSA 155 (213)
T ss_pred hhcccceEEEEeccch--hhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCc-eEEEecc
Confidence 9999999999998763 233344444443 22 2 35889999999988776 2333 4555 8899999
Q ss_pred ccCCCHHHHHHHHHHhcCC
Q psy17089 146 LYGNGIKNFLENILTIELP 164 (419)
Q Consensus 146 ~~~~~v~~l~~~i~~~~~~ 164 (419)
++|.|+++.|..+.+.+..
T Consensus 156 k~g~NVeEAF~mlaqeIf~ 174 (213)
T KOG0091|consen 156 KNGCNVEEAFDMLAQEIFQ 174 (213)
T ss_pred cCCCcHHHHHHHHHHHHHH
Confidence 9999999999998876544
No 432
>CHL00071 tufA elongation factor Tu
Probab=99.73 E-value=1.3e-16 Score=155.49 Aligned_cols=151 Identities=20% Similarity=0.216 Sum_probs=116.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCce---------------ecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDAL---------------VANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGI 68 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 68 (419)
+|+++|++|+|||||+|+|++..... .....++|++.....+..++.++.++||||+.
T Consensus 14 ~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~------- 86 (409)
T CHL00071 14 NIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA------- 86 (409)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH-------
Confidence 69999999999999999999752211 11235788887777777788899999999976
Q ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCC-EEEEEeccCCCCCCcc--------hhHH-hcCC-
Q psy17089 69 MHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQP-IVLVINKSENINSSIS--------LDFY-ELGI- 137 (419)
Q Consensus 69 ~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p-~ilv~NK~Dl~~~~~~--------~~~~-~~~~- 137 (419)
.+...+...+..+|++++|+|+..+...++.+++.++...++| +++++||+|+....+. .+++ ..++
T Consensus 87 --~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 87 --DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred --HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 5666777888999999999999999999999999999888999 6789999999864432 1111 2232
Q ss_pred ---CCeEEEeeccCCC------------------HHHHHHHHHHhcC
Q psy17089 138 ---GNPHIISALYGNG------------------IKNFLENILTIEL 163 (419)
Q Consensus 138 ---~~~~~vSa~~~~~------------------v~~l~~~i~~~~~ 163 (419)
-+++++||.+|.+ +..|++.|...++
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~ 211 (409)
T CHL00071 165 GDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIP 211 (409)
T ss_pred CCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCC
Confidence 3679999998863 4567777766553
No 433
>KOG0097|consensus
Probab=99.72 E-value=8.3e-17 Score=125.81 Aligned_cols=159 Identities=19% Similarity=0.152 Sum_probs=112.5
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCC-ccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPG-TTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~-~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
-.+|-.++|+-|||||.|+..++.+. ...+.|. +...+....++..|. ++.+|||+|+ |+|+ .-
T Consensus 10 yifkyiiigdmgvgkscllhqftekk--fmadcphtigvefgtriievsgqkiklqiwdtagq----------erfr-av 76 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKK--FMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ----------ERFR-AV 76 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHH--HhhcCCcccceecceeEEEecCcEEEEEEeecccH----------HHHH-HH
Confidence 35788999999999999999998764 2334443 234444555666665 5667999999 7776 34
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (419)
+..|++.|.++++|+|++.+.+...+. |+...+. .+..+++++||.||....+. ..++ .+.++..++..|+++
T Consensus 77 trsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv--~yee-ak~faeengl~fle~ 153 (215)
T KOG0097|consen 77 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDV--TYEE-AKEFAEENGLMFLEA 153 (215)
T ss_pred HHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccC--cHHH-HHHHHhhcCeEEEEe
Confidence 558999999999999999987666653 3333333 45668999999999543322 1222 223344466789999
Q ss_pred eccCCCCHHHHHHHHHHHHhhc
Q psy17089 334 SAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
|||+|.|+++.|-...+.+...
T Consensus 154 saktg~nvedafle~akkiyqn 175 (215)
T KOG0097|consen 154 SAKTGQNVEDAFLETAKKIYQN 175 (215)
T ss_pred cccccCcHHHHHHHHHHHHHHh
Confidence 9999999999887666655443
No 434
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.72 E-value=4.2e-17 Score=136.42 Aligned_cols=149 Identities=23% Similarity=0.169 Sum_probs=100.6
Q ss_pred EEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEE--eCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhh
Q psy17089 187 IVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY--NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILE 264 (419)
Q Consensus 187 l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ 264 (419)
++|.+|+|||||+|++.+.... ......+..+........ .+..+.+|||||+.... ......++.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-----------~~~~~~~~~ 68 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFR-----------SLRRLYYRG 68 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC-CcccccchhheeeEEEEECCEEEEEEEEecCChHHHH-----------hHHHHHhcC
Confidence 5799999999999999987532 122222223333333332 25688999999983221 122457788
Q ss_pred cCEEEEEecCCCCCCHHHHHHH-----HHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCC
Q psy17089 265 ANVVILLLDAQQNISAQDINIA-----NFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLN 339 (419)
Q Consensus 265 ad~~i~v~d~~~~~~~~~~~~~-----~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 339 (419)
+|++++|+|++++.+..+...+ ......+.|+++|+||+|+.......... ...........+++++||+++.
T Consensus 69 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~ 146 (157)
T cd00882 69 ADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE--LAEQLAKELGVPYFETSAKTGE 146 (157)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH--HHHHHHhhcCCcEEEEecCCCC
Confidence 9999999999987665555432 23334689999999999997654433221 1112223345799999999999
Q ss_pred CHHHHHHHHH
Q psy17089 340 NINSFMESIN 349 (419)
Q Consensus 340 gv~~l~~~i~ 349 (419)
|++++++++.
T Consensus 147 ~i~~~~~~l~ 156 (157)
T cd00882 147 NVEELFEELA 156 (157)
T ss_pred ChHHHHHHHh
Confidence 9999999875
No 435
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.72 E-value=2e-16 Score=147.66 Aligned_cols=161 Identities=22% Similarity=0.180 Sum_probs=111.5
Q ss_pred EEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEE------------------------eCeeEEEEeCCCC
Q psy17089 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY------------------------NNKKYILIDTAGI 240 (419)
Q Consensus 185 i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~------------------------~~~~~~liDtpG~ 240 (419)
|+++|.||||||||+|+|++.. +.++++|++|.++..+.... ...++.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 5899999999999999999875 57889999998887655443 1247899999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCC------------C-HHHHH-------HH--------------
Q psy17089 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNI------------S-AQDIN-------IA-------------- 286 (419)
Q Consensus 241 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~------------~-~~~~~-------~~-------------- 286 (419)
....... +-.....+.+++.||++++|+|++... . ..+.. .+
T Consensus 80 v~ga~~~----~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~ 155 (318)
T cd01899 80 VPGAHEG----KGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVR 155 (318)
T ss_pred CCCccch----hhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6543111 112245668899999999999997410 0 11110 00
Q ss_pred ----------------------------HHH------------------------HHcCCcEEEEEEcccCCChhhHHHH
Q psy17089 287 ----------------------------NFI------------------------YESGRSLIVCVNKWDSIIHNQRKII 314 (419)
Q Consensus 287 ----------------------------~~~------------------------~~~~~~~iiv~NK~Dl~~~~~~~~~ 314 (419)
..+ ....+|+|+|+||+|+......
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~--- 232 (318)
T cd01899 156 KADAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENN--- 232 (318)
T ss_pred HHhcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHH---
Confidence 000 0123799999999998644332
Q ss_pred HHHHHHHcCCCCCCcEEEEeccCCCCHHHHHH-HHHHHHhhcC
Q psy17089 315 KNNIKKKLNFLSFAMFNFISAIKLNNINSFME-SINHVYDSSI 356 (419)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~-~i~~~~~~~~ 356 (419)
.+.+... ..+.+++++||+.+.++++|.+ .+.+.+++..
T Consensus 233 ~~~l~~~---~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~ 272 (318)
T cd01899 233 ISKLRLK---YPDEIVVPTSAEAELALRRAAKQGLIKYDPGDS 272 (318)
T ss_pred HHHHHhh---CCCCeEEEEeCcccccHHHHHHhhHHHhCCCCC
Confidence 2223222 2356899999999999999998 5999887654
No 436
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.72 E-value=2.5e-16 Score=140.61 Aligned_cols=148 Identities=21% Similarity=0.240 Sum_probs=105.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCc------ee-------cCCCCCCc------------------------cceEEEEE
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDA------LV-------ANYPGLTR------------------------DRHYGEGY 46 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~------~~-------~~~~~~t~------------------------~~~~~~~~ 46 (419)
||+++|+.++|||||+++|....-. .. ....|.|. +.....+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999842110 00 00011111 00012344
Q ss_pred ECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHH--hCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCC
Q psy17089 47 IGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII--ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124 (419)
Q Consensus 47 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~--~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~ 124 (419)
..++.+.++||||+. .+...+...+. .+|++++|+|+..+....+..++.++...++|+++|+||+|+.
T Consensus 81 ~~~~~i~liDtpG~~---------~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~ 151 (224)
T cd04165 81 KSSKLVTFIDLAGHE---------RYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLA 151 (224)
T ss_pred eCCcEEEEEECCCcH---------HHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECcccc
Confidence 567889999999986 44444555454 6899999999999999999999999999999999999999987
Q ss_pred CCCcc----h---hHHh-cC-------------------------CCCeEEEeeccCCCHHHHHHHHHH
Q psy17089 125 NSSIS----L---DFYE-LG-------------------------IGNPHIISALYGNGIKNFLENILT 160 (419)
Q Consensus 125 ~~~~~----~---~~~~-~~-------------------------~~~~~~vSa~~~~~v~~l~~~i~~ 160 (419)
+.... . +++. .+ ..+++++||.+|.|+++|+..|..
T Consensus 152 ~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 152 PANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred CHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 65432 1 1111 11 227899999999999999888764
No 437
>PRK00098 GTPase RsgA; Reviewed
Probab=99.72 E-value=1.7e-17 Score=154.73 Aligned_cols=140 Identities=21% Similarity=0.285 Sum_probs=98.2
Q ss_pred HHHhCCEEEEEEeCCCCCCHhH--HHHHHHHHhcCCCEEEEEeccCCCCCCcc----hhHH-hcCCCCeEEEeeccCCCH
Q psy17089 79 AIIESDIIIFIVDGRQGLVEQD--KLITNFLRKSGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGI 151 (419)
Q Consensus 79 ~~~~~d~il~v~d~~~~~~~~~--~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~----~~~~-~~~~~~~~~vSa~~~~~v 151 (419)
.+.++|.+++|+|+.++..... ..++..++..++|+++|+||+|+...... .+.+ ..+. +++++||+++.|+
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~-~v~~vSA~~g~gi 155 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGY-DVLELSAKEGEGL 155 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCC-eEEEEeCCCCccH
Confidence 3689999999999975432221 34444456678999999999999643222 2223 4455 7899999999999
Q ss_pred HHHHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCC-------ccceeeeEe
Q psy17089 152 KNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPG-------TTRDSIKSL 224 (419)
Q Consensus 152 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~-------~t~~~~~~~ 224 (419)
++|++.+.. ..++++|.+|||||||+|+|++.....++..+. ||......
T Consensus 156 ~~L~~~l~g----------------------k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~- 212 (298)
T PRK00098 156 DELKPLLAG----------------------KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELY- 212 (298)
T ss_pred HHHHhhccC----------------------ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEE-
Confidence 998877531 268999999999999999999876544444332 45433222
Q ss_pred eEEeCeeEEEEeCCCCCCCC
Q psy17089 225 FEYNNKKYILIDTAGIRRRN 244 (419)
Q Consensus 225 ~~~~~~~~~liDtpG~~~~~ 244 (419)
... ....++||||+..+.
T Consensus 213 -~~~-~~~~~~DtpG~~~~~ 230 (298)
T PRK00098 213 -DLP-GGGLLIDTPGFSSFG 230 (298)
T ss_pred -EcC-CCcEEEECCCcCccC
Confidence 222 245889999997654
No 438
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.72 E-value=2.6e-16 Score=146.85 Aligned_cols=160 Identities=24% Similarity=0.322 Sum_probs=113.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEE------------------------CCeEEEEEEcCCC
Q psy17089 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI------------------------GKKSFIIIDTGGF 60 (419)
Q Consensus 5 i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~------------------------~~~~~~liDtpG~ 60 (419)
|+++|.||||||||+|+|++.. +.++++|++|+++..+...+ .+.++.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 5899999999999999999875 56789999999988776654 2257899999999
Q ss_pred CCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCC------------CCHh-H-----HH--------------------
Q psy17089 61 EPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQG------------LVEQ-D-----KL-------------------- 102 (419)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~------------~~~~-~-----~~-------------------- 102 (419)
.... +..+.+..+++..+++||++++|+|+... ..+. + .+
T Consensus 80 v~ga--~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~ 157 (318)
T cd01899 80 VPGA--HEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKA 157 (318)
T ss_pred CCCc--cchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6443 11234556778889999999999997621 0000 0 00
Q ss_pred ------------------------HHHHHH------------------------hcCCCEEEEEeccCCCCCCcchhHH-
Q psy17089 103 ------------------------ITNFLR------------------------KSGQPIVLVINKSENINSSISLDFY- 133 (419)
Q Consensus 103 ------------------------~~~~l~------------------------~~~~p~ilv~NK~Dl~~~~~~~~~~- 133 (419)
+.+.|+ ...+|+++|+||+|+.......+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~~l~ 237 (318)
T cd01899 158 DAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNISKLR 237 (318)
T ss_pred hcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHHHHH
Confidence 000110 1246999999999976444332211
Q ss_pred -hcCCCCeEEEeeccCCCHHHHHH-HHHHhcCCcch
Q psy17089 134 -ELGIGNPHIISALYGNGIKNFLE-NILTIELPYKK 167 (419)
Q Consensus 134 -~~~~~~~~~vSa~~~~~v~~l~~-~i~~~~~~~~~ 167 (419)
......++++||+.+.++++|.+ .+.+.+|+.+.
T Consensus 238 ~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~ 273 (318)
T cd01899 238 LKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSD 273 (318)
T ss_pred hhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCC
Confidence 23345789999999999999998 69999998754
No 439
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.72 E-value=1.2e-16 Score=165.72 Aligned_cols=146 Identities=21% Similarity=0.169 Sum_probs=115.0
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceee-----ec------------CCCCccceeeeEeeEEeCeeEEEEeCCCCCCC
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVI-----TY------------DTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~-----~~------------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 243 (419)
+..+|+++|++|+|||||+|+|+...... +. ...|+|.+.....+++++.++.+|||||+.++
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 45799999999999999999997432111 11 13588888888999999999999999999554
Q ss_pred CcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcC
Q psy17089 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLN 323 (419)
Q Consensus 244 ~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 323 (419)
. .....+++.+|++++|+|++++...++..++..+...++|+++|+||+|+.... .....+.+...+.
T Consensus 89 ~-----------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~-~~~~~~~i~~~l~ 156 (689)
T TIGR00484 89 T-----------VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGAN-FLRVVNQIKQRLG 156 (689)
T ss_pred h-----------HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHHHhC
Confidence 3 234467889999999999999988888899999988999999999999997544 4445666777666
Q ss_pred CCCCCcEEEEeccCC
Q psy17089 324 FLSFAMFNFISAIKL 338 (419)
Q Consensus 324 ~~~~~~~~~~SA~~g 338 (419)
.......+++||..+
T Consensus 157 ~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 157 ANAVPIQLPIGAEDN 171 (689)
T ss_pred CCceeEEeccccCCC
Confidence 544445688888776
No 440
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.71 E-value=7.3e-16 Score=137.75 Aligned_cols=153 Identities=21% Similarity=0.178 Sum_probs=102.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEEC--CeEEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG--KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
..||+++|++|||||||+++++... ......++...+.....+..+ ...+.+|||||.. ++......+
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~---------~~~~~~~~~ 78 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGE-FEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE---------KFGGLRDGY 78 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCC-CCCCCCCccceEEEEEEEEECCeEEEEEEEECCCch---------hhhhhhHHH
Confidence 3699999999999999998876542 111222333333333333333 3577899999986 344444567
Q ss_pred HHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh--cCCCEEEEEeccCCCCCCcc---hhHH-hcCCCCeEEEeeccCCCHH
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK--SGQPIVLVINKSENINSSIS---LDFY-ELGIGNPHIISALYGNGIK 152 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~---~~~~-~~~~~~~~~vSa~~~~~v~ 152 (419)
+.+++++++|+|..+..+... ..+...+.+ .+.|+++|+||+|+...... .++. ..+. .++++||++|.|++
T Consensus 79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~ 157 (215)
T PTZ00132 79 YIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNL-QYYDISAKSNYNFE 157 (215)
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCC-EEEEEeCCCCCCHH
Confidence 789999999999886443322 122222221 36899999999998654332 2222 2333 78999999999999
Q ss_pred HHHHHHHHhcCCc
Q psy17089 153 NFLENILTIELPY 165 (419)
Q Consensus 153 ~l~~~i~~~~~~~ 165 (419)
+.|..|++.+...
T Consensus 158 ~~f~~ia~~l~~~ 170 (215)
T PTZ00132 158 KPFLWLARRLTND 170 (215)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999877654
No 441
>PRK00007 elongation factor G; Reviewed
Probab=99.71 E-value=2.2e-16 Score=163.47 Aligned_cols=146 Identities=21% Similarity=0.188 Sum_probs=117.7
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhC---Ccee--eec------------CCCCccceeeeEeeEEeCeeEEEEeCCCCCCC
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLG---ENRV--ITY------------DTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~---~~~~--~~~------------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 243 (419)
+..+|+++|++|+|||||+++|+. .... .+. ...|+|++.....+.+.+..+.++||||+.
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~-- 86 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV-- 86 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH--
Confidence 557999999999999999999973 2111 111 356889999888999999999999999983
Q ss_pred CcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcC
Q psy17089 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLN 323 (419)
Q Consensus 244 ~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 323 (419)
.|. ......++.+|++++|+|+..+...++..++..+.+.++|+++++||+|+.+.. .....+.+++.+.
T Consensus 87 --------~f~-~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~-~~~~~~~i~~~l~ 156 (693)
T PRK00007 87 --------DFT-IEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGAD-FYRVVEQIKDRLG 156 (693)
T ss_pred --------HHH-HHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHHHhC
Confidence 333 245678889999999999999999999999999999999999999999998644 4446677777777
Q ss_pred CCCCCcEEEEeccCC
Q psy17089 324 FLSFAMFNFISAIKL 338 (419)
Q Consensus 324 ~~~~~~~~~~SA~~g 338 (419)
.......+++||..+
T Consensus 157 ~~~~~~~ipisa~~~ 171 (693)
T PRK00007 157 ANPVPIQLPIGAEDD 171 (693)
T ss_pred CCeeeEEecCccCCc
Confidence 655566788888776
No 442
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.71 E-value=4.4e-16 Score=155.11 Aligned_cols=117 Identities=23% Similarity=0.293 Sum_probs=90.3
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCcee---------------eecC------CCCccceeeeEeeEEeCeeEEEEeCC
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRV---------------ITYD------TPGTTRDSIKSLFEYNNKKYILIDTA 238 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~---------------~~~~------~~~~t~~~~~~~~~~~~~~~~liDtp 238 (419)
.+..+|+++|++|+|||||+++|+..... .+++ ..|.+.......+.+++..+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 35679999999999999999999731110 0011 11444555556678888999999999
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCC
Q psy17089 239 GIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSII 307 (419)
Q Consensus 239 G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 307 (419)
|+.++ . ..+..+++.+|++++|+|++++...+...+++.....++|+++++||+|+..
T Consensus 88 G~~df----------~-~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHEDF----------S-EDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDG 145 (526)
T ss_pred Cchhh----------H-HHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccc
Confidence 99433 2 3345678899999999999999888888888888889999999999999864
No 443
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.70 E-value=4.8e-16 Score=151.79 Aligned_cols=164 Identities=20% Similarity=0.146 Sum_probs=116.4
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceee--ecCCCCccceeeeEeeE---------------E---------------
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVI--TYDTPGTTRDSIKSLFE---------------Y--------------- 227 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~--~~~~~~~t~~~~~~~~~---------------~--------------- 227 (419)
...++|+++|+...|||||+.+|++..... -.-..|.|.+....... +
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 356899999999999999999999753211 11223444433222110 0
Q ss_pred ---eCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCC-CCHHHHHHHHHHHHcCC-cEEEEEEc
Q psy17089 228 ---NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQN-ISAQDINIANFIYESGR-SLIVCVNK 302 (419)
Q Consensus 228 ---~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~-~~~~~~~~~~~~~~~~~-~~iiv~NK 302 (419)
....+.++||||+ +.|. ..+...+..+|++++|+|+..+ ...+..+.+..+...++ ++|+|+||
T Consensus 112 ~~~~~~~i~~IDtPGH----------~~fi-~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNK 180 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGH----------DILM-ATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNK 180 (460)
T ss_pred cccccceEeeeeCCCH----------HHHH-HHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEec
Confidence 0247889999998 4553 5556778899999999999985 56666666766666666 48899999
Q ss_pred ccCCChhhHHHHHHHHHHHcCC--CCCCcEEEEeccCCCCHHHHHHHHHHHHhh
Q psy17089 303 WDSIIHNQRKIIKNNIKKKLNF--LSFAMFNFISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 303 ~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
+|+.+.....+..+++.+.+.. ....+++++||++|.|+++|++.|.+.++.
T Consensus 181 iDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 181 IDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred ccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 9998765555555555554432 245799999999999999999999875543
No 444
>PRK12735 elongation factor Tu; Reviewed
Probab=99.70 E-value=4.1e-16 Score=151.39 Aligned_cols=151 Identities=18% Similarity=0.207 Sum_probs=115.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC------CCc---------eecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNS------RDA---------LVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGI 68 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~------~~~---------~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 68 (419)
+|+++|++++|||||+++|++. ... ......++|.+.....+..++.++.++||||+.
T Consensus 14 ~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~------- 86 (396)
T PRK12735 14 NVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA------- 86 (396)
T ss_pred EEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH-------
Confidence 6999999999999999999862 110 011245788887766677778899999999986
Q ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEE-EEEeccCCCCCCcc--------hhHH-hcCC-
Q psy17089 69 MHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIV-LVINKSENINSSIS--------LDFY-ELGI- 137 (419)
Q Consensus 69 ~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~i-lv~NK~Dl~~~~~~--------~~~~-~~~~- 137 (419)
.+...+...+..+|++++|+|+..+...+..+++..+...++|.+ +++||+|+....+. ..+. ..++
T Consensus 87 --~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 87 --DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred --HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 566677778889999999999998888888888888888899966 57999999754322 1112 2222
Q ss_pred ---CCeEEEeeccCC----------CHHHHHHHHHHhcC
Q psy17089 138 ---GNPHIISALYGN----------GIKNFLENILTIEL 163 (419)
Q Consensus 138 ---~~~~~vSa~~~~----------~v~~l~~~i~~~~~ 163 (419)
.+++++||++|. ++.+|++.|...++
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 367999999984 67888888887765
No 445
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.70 E-value=3e-16 Score=154.22 Aligned_cols=142 Identities=21% Similarity=0.249 Sum_probs=104.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCcee------------------------------cCCCCCCccceEEEEEECCeEE
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALV------------------------------ANYPGLTRDRHYGEGYIGKKSF 52 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~~~ 52 (419)
.+|+++|+.++|||||+++|+...+.+. ....++|.+.....+.+++..+
T Consensus 8 ~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~i 87 (426)
T TIGR00483 8 INVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYEV 87 (426)
T ss_pred eEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeEE
Confidence 4799999999999999999985322211 1234788998888899999999
Q ss_pred EEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCC---CCHhHHHHHHHHHhcC-CCEEEEEeccCCCCCCc
Q psy17089 53 IIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQG---LVEQDKLITNFLRKSG-QPIVLVINKSENINSSI 128 (419)
Q Consensus 53 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~---~~~~~~~~~~~l~~~~-~p~ilv~NK~Dl~~~~~ 128 (419)
.+|||||+. ++...+...+..+|++++|+|++++ ......+.+.+++..+ .|+++|+||+|+.....
T Consensus 88 ~iiDtpGh~---------~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~ 158 (426)
T TIGR00483 88 TIVDCPGHR---------DFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDE 158 (426)
T ss_pred EEEECCCHH---------HHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccH
Confidence 999999986 5556666678899999999999887 3444444444555555 46889999999975322
Q ss_pred c---------hhHH-hcCC----CCeEEEeeccCCCHHH
Q psy17089 129 S---------LDFY-ELGI----GNPHIISALYGNGIKN 153 (419)
Q Consensus 129 ~---------~~~~-~~~~----~~~~~vSa~~~~~v~~ 153 (419)
. .++. ..++ .+++++||++|.|+++
T Consensus 159 ~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 159 EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 1 1222 2332 3689999999999985
No 446
>PLN03127 Elongation factor Tu; Provisional
Probab=99.70 E-value=9.6e-16 Score=150.05 Aligned_cols=153 Identities=20% Similarity=0.190 Sum_probs=115.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCC------CCce---------ecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNS------RDAL---------VANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKG 67 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~------~~~~---------~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 67 (419)
.+|+++|+.++|||||+++|++. .... .....++|++.....++.++.++.++||||+.
T Consensus 62 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~------ 135 (447)
T PLN03127 62 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHA------ 135 (447)
T ss_pred EEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCcc------
Confidence 36999999999999999999732 1111 11236899998888888888999999999996
Q ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCE-EEEEeccCCCCCCcc----h----hHH-hcCC
Q psy17089 68 IMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPI-VLVINKSENINSSIS----L----DFY-ELGI 137 (419)
Q Consensus 68 ~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~-ilv~NK~Dl~~~~~~----~----~~~-~~~~ 137 (419)
.+.......+..+|++++|+|+..+...++.+++.++...++|. ++++||+|+...... . +++ ..++
T Consensus 136 ---~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 136 ---DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred ---chHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 45555556677899999999999988999999999999999995 788999999754332 1 111 1122
Q ss_pred ----CCeEEEeec---cCCC-------HHHHHHHHHHhcCC
Q psy17089 138 ----GNPHIISAL---YGNG-------IKNFLENILTIELP 164 (419)
Q Consensus 138 ----~~~~~vSa~---~~~~-------v~~l~~~i~~~~~~ 164 (419)
-+++++||. +|.| +.+|++.+.+.++.
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~ 253 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPE 253 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCC
Confidence 256777765 4555 67888888887663
No 447
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.70 E-value=2.6e-16 Score=127.51 Aligned_cols=139 Identities=24% Similarity=0.251 Sum_probs=92.6
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHh
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~ 263 (419)
||+++|++|+|||||+++|.+.+. .+ ..|.. +.+.+ .+|||||-.-.. .+..........
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~----~~-~KTq~-----i~~~~---~~IDTPGEyiE~-------~~~y~aLi~ta~ 62 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI----RY-KKTQA-----IEYYD---NTIDTPGEYIEN-------PRFYHALIVTAQ 62 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC----Cc-Cccce-----eEecc---cEEECChhheeC-------HHHHHHHHHHHh
Confidence 799999999999999999998753 11 12221 22222 249999963322 111233345667
Q ss_pred hcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCC-hhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHH
Q psy17089 264 EANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSII-HNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNIN 342 (419)
Q Consensus 264 ~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 342 (419)
.||++++|.|++++.+.- --.+....++|+|-|+||+|+.. +.+.+.. ++.+...+..++|++||.+|+|++
T Consensus 63 dad~V~ll~dat~~~~~~---pP~fa~~f~~pvIGVITK~Dl~~~~~~i~~a----~~~L~~aG~~~if~vS~~~~eGi~ 135 (143)
T PF10662_consen 63 DADVVLLLQDATEPRSVF---PPGFASMFNKPVIGVITKIDLPSDDANIERA----KKWLKNAGVKEIFEVSAVTGEGIE 135 (143)
T ss_pred hCCEEEEEecCCCCCccC---CchhhcccCCCEEEEEECccCccchhhHHHH----HHHHHHcCCCCeEEEECCCCcCHH
Confidence 899999999999863211 12233345799999999999973 2332222 233333444578999999999999
Q ss_pred HHHHHHH
Q psy17089 343 SFMESIN 349 (419)
Q Consensus 343 ~l~~~i~ 349 (419)
+|.+.|.
T Consensus 136 eL~~~L~ 142 (143)
T PF10662_consen 136 ELKDYLE 142 (143)
T ss_pred HHHHHHh
Confidence 9998875
No 448
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.70 E-value=1.7e-16 Score=147.28 Aligned_cols=139 Identities=25% Similarity=0.266 Sum_probs=98.0
Q ss_pred HHhCCEEEEEEeCCCCC-CHhH-HHHHHHHHhcCCCEEEEEeccCCCCCCcc---hhHH-hcCCCCeEEEeeccCCCHHH
Q psy17089 80 IIESDIIIFIVDGRQGL-VEQD-KLITNFLRKSGQPIVLVINKSENINSSIS---LDFY-ELGIGNPHIISALYGNGIKN 153 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~-~~~~-~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~---~~~~-~~~~~~~~~vSa~~~~~v~~ 153 (419)
+.++|.+++|+|+.++. +... ..++..+...++|.++|+||+|+...... ..++ ..+. +++++||+++.|+++
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~-~v~~vSA~~g~gi~~ 154 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGY-PVLAVSAKTGEGLDE 154 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCC-eEEEEECCCCccHHH
Confidence 78999999999998765 3222 33444455678999999999999765332 1222 3454 789999999999999
Q ss_pred HHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCC-------CCccceeeeEeeE
Q psy17089 154 FLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDT-------PGTTRDSIKSLFE 226 (419)
Q Consensus 154 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~-------~~~t~~~~~~~~~ 226 (419)
|+..+.. ..++++|++|+|||||+|.|++.....++.. .++|...... .
T Consensus 155 L~~~L~~----------------------k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~--~ 210 (287)
T cd01854 155 LREYLKG----------------------KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELF--P 210 (287)
T ss_pred HHhhhcc----------------------ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEE--E
Confidence 8877652 3689999999999999999998754443322 2345544332 2
Q ss_pred EeCeeEEEEeCCCCCCCC
Q psy17089 227 YNNKKYILIDTAGIRRRN 244 (419)
Q Consensus 227 ~~~~~~~liDtpG~~~~~ 244 (419)
.. ....++||||+.++.
T Consensus 211 ~~-~~~~liDtPG~~~~~ 227 (287)
T cd01854 211 LP-GGGLLIDTPGFREFG 227 (287)
T ss_pred cC-CCCEEEECCCCCccC
Confidence 22 134789999997654
No 449
>PRK12739 elongation factor G; Reviewed
Probab=99.70 E-value=4.1e-16 Score=161.59 Aligned_cols=146 Identities=21% Similarity=0.176 Sum_probs=115.2
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCce-----eeec------------CCCCccceeeeEeeEEeCeeEEEEeCCCCCCC
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENR-----VITY------------DTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~-----~~~~------------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 243 (419)
...+|+++|++|+|||||+++|+.... ..+. ...|+|.+.....+.+++.++.+|||||+.
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~-- 84 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV-- 84 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH--
Confidence 567899999999999999999974211 0111 256899999899999999999999999983
Q ss_pred CcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcC
Q psy17089 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLN 323 (419)
Q Consensus 244 ~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 323 (419)
.|. ..+..+++.+|++++|+|+..+...++..++..+...++|+++++||+|+.... .....+++...+.
T Consensus 85 --------~f~-~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~-~~~~~~~i~~~l~ 154 (691)
T PRK12739 85 --------DFT-IEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGAD-FFRSVEQIKDRLG 154 (691)
T ss_pred --------HHH-HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHHHhC
Confidence 333 245678899999999999999999999999999999999999999999998644 4456667777666
Q ss_pred CCCCCcEEEEeccCC
Q psy17089 324 FLSFAMFNFISAIKL 338 (419)
Q Consensus 324 ~~~~~~~~~~SA~~g 338 (419)
.......+++|+..+
T Consensus 155 ~~~~~~~iPis~~~~ 169 (691)
T PRK12739 155 ANAVPIQLPIGAEDD 169 (691)
T ss_pred CCceeEEeccccccc
Confidence 543344567777654
No 450
>KOG0395|consensus
Probab=99.70 E-value=4.1e-16 Score=135.78 Aligned_cols=150 Identities=20% Similarity=0.196 Sum_probs=115.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeE--EEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKS--FIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|.+|||||+|..++++.. ++..+.++.-|.....+.+++.. +.|+||+|+. ++......++
T Consensus 4 ~kvvvlG~~gVGKSal~~qf~~~~--f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~---------~~~~~~~~~~ 72 (196)
T KOG0395|consen 4 YKVVVLGAGGVGKSALTIQFLTGR--FVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQE---------EFSAMRDLYI 72 (196)
T ss_pred eEEEEECCCCCCcchheeeecccc--cccccCCCccccceEEEEECCEEEEEEEEcCCCcc---------cChHHHHHhh
Confidence 589999999999999999999853 57777777778888888888764 4499999976 4445666778
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
.++++.++|++.++..+.+. ..+.+.+.+ ...|+++|+||+|+...+.+ ..+. ..+. .++++||+.+.
T Consensus 73 ~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~-~f~E~Sak~~~ 151 (196)
T KOG0395|consen 73 RNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGC-AFIETSAKLNY 151 (196)
T ss_pred ccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCC-cEEEeeccCCc
Confidence 99999999999887555444 333333322 35699999999999986665 2222 3445 58999999999
Q ss_pred CHHHHHHHHHHhcCC
Q psy17089 150 GIKNFLENILTIELP 164 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~ 164 (419)
+++++|..+.+.+..
T Consensus 152 ~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 152 NVDEVFYELVREIRL 166 (196)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999876544
No 451
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.69 E-value=1.2e-16 Score=137.72 Aligned_cols=146 Identities=26% Similarity=0.320 Sum_probs=106.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.+|+++|..|+||||++++|.... .....| |.......+.+.+..+.+||.+|.. .+......++.+
T Consensus 15 ~~ililGl~~sGKTtll~~l~~~~--~~~~~p--T~g~~~~~i~~~~~~~~~~d~gG~~---------~~~~~w~~y~~~ 81 (175)
T PF00025_consen 15 IKILILGLDGSGKTTLLNRLKNGE--ISETIP--TIGFNIEEIKYKGYSLTIWDLGGQE---------SFRPLWKSYFQN 81 (175)
T ss_dssp EEEEEEESTTSSHHHHHHHHHSSS--EEEEEE--ESSEEEEEEEETTEEEEEEEESSSG---------GGGGGGGGGHTT
T ss_pred EEEEEECCCccchHHHHHHhhhcc--ccccCc--ccccccceeeeCcEEEEEEeccccc---------cccccceeeccc
Confidence 489999999999999999998753 222222 3445566788899999999999986 444556667889
Q ss_pred CCEEEEEEeCCCCC--CHhHHHHHHHHHh---cCCCEEEEEeccCCCCCCcch---hHH---hcC---CCCeEEEeeccC
Q psy17089 83 SDIIIFIVDGRQGL--VEQDKLITNFLRK---SGQPIVLVINKSENINSSISL---DFY---ELG---IGNPHIISALYG 148 (419)
Q Consensus 83 ~d~il~v~d~~~~~--~~~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~---~~~---~~~---~~~~~~vSa~~~ 148 (419)
+|+++||+|+.+.. .+....+.+.+.. .++|+++++||+|+....... +.. .+. .-.++.+||.+|
T Consensus 82 ~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g 161 (175)
T PF00025_consen 82 ADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTG 161 (175)
T ss_dssp ESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTT
T ss_pred cceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCC
Confidence 99999999988532 2233444444442 478999999999988765441 111 111 124688999999
Q ss_pred CCHHHHHHHHHHh
Q psy17089 149 NGIKNFLENILTI 161 (419)
Q Consensus 149 ~~v~~l~~~i~~~ 161 (419)
+|+.+.+++|.+.
T Consensus 162 ~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 162 EGVDEGLEWLIEQ 174 (175)
T ss_dssp BTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhc
Confidence 9999999999865
No 452
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.69 E-value=2.1e-16 Score=141.34 Aligned_cols=140 Identities=23% Similarity=0.315 Sum_probs=101.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCce------------------------------ecCCCCCCccceEEEEEECCeEEE
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDAL------------------------------VANYPGLTRDRHYGEGYIGKKSFI 53 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~~~~~ 53 (419)
+|+++|++++|||||+.+|+...+.+ .....++|++.....+.+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 48999999999999999996322110 112347889988889999999999
Q ss_pred EEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCC-------CCHhHHHHHHHHHhcC-CCEEEEEeccCCCC
Q psy17089 54 IIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQG-------LVEQDKLITNFLRKSG-QPIVLVINKSENIN 125 (419)
Q Consensus 54 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-------~~~~~~~~~~~l~~~~-~p~ilv~NK~Dl~~ 125 (419)
+|||||+. .+...+...+..+|++++|+|+.++ ...+..+....+...+ +|+++|+||+|+..
T Consensus 81 liDtpG~~---------~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 81 ILDAPGHR---------DFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVT 151 (219)
T ss_pred EEECCChH---------HHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcccccc
Confidence 99999985 4445566678899999999999873 3334444455555555 68899999999984
Q ss_pred C---Cc-c----h---hHH-hcCC----CCeEEEeeccCCCHH
Q psy17089 126 S---SI-S----L---DFY-ELGI----GNPHIISALYGNGIK 152 (419)
Q Consensus 126 ~---~~-~----~---~~~-~~~~----~~~~~vSa~~~~~v~ 152 (419)
. .. . . +++ ..+. .+++++||++|.|++
T Consensus 152 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 152 VNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 2 11 1 1 112 2333 358999999999986
No 453
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.69 E-value=5.1e-16 Score=151.22 Aligned_cols=153 Identities=20% Similarity=0.159 Sum_probs=107.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCC--ceecCCCCCCccceEEEEE--------------------E------CCeEEEE
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRD--ALVANYPGLTRDRHYGEGY--------------------I------GKKSFII 54 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~--~~~~~~~~~t~~~~~~~~~--------------------~------~~~~~~l 54 (419)
.+|+++|.+++|||||+++|.+... .......++|.+..+..+. . .+..+.+
T Consensus 5 ~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 84 (406)
T TIGR03680 5 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSF 84 (406)
T ss_pred EEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEE
Confidence 3799999999999999999976421 0011122344443322111 0 1467999
Q ss_pred EEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCC-CHhHHHHHHHHHhcCC-CEEEEEeccCCCCCCcc---
Q psy17089 55 IDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGL-VEQDKLITNFLRKSGQ-PIVLVINKSENINSSIS--- 129 (419)
Q Consensus 55 iDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~-~~~~~~~~~~l~~~~~-p~ilv~NK~Dl~~~~~~--- 129 (419)
|||||++ ++...+...+..+|++++|+|++++. ..+..+.+..+...+. |+++|+||+|+......
T Consensus 85 iDtPGh~---------~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~ 155 (406)
T TIGR03680 85 VDAPGHE---------TLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALEN 155 (406)
T ss_pred EECCCHH---------HHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHH
Confidence 9999997 66667777788999999999999876 5666666666666654 68999999999865432
Q ss_pred -h---hHHhc---CCCCeEEEeeccCCCHHHHHHHHHHhcCC
Q psy17089 130 -L---DFYEL---GIGNPHIISALYGNGIKNFLENILTIELP 164 (419)
Q Consensus 130 -~---~~~~~---~~~~~~~vSa~~~~~v~~l~~~i~~~~~~ 164 (419)
. ++... ...+++++||++|.|+++|++.|...++.
T Consensus 156 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 156 YEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPT 197 (406)
T ss_pred HHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence 1 11111 11268999999999999999999987664
No 454
>KOG0097|consensus
Probab=99.69 E-value=4.4e-16 Score=121.79 Aligned_cols=148 Identities=18% Similarity=0.191 Sum_probs=113.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCC-CCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYP-GLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQ 78 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~-~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~ 78 (419)
.+|-+|+|+-|||||.|+..|..++ +..+.| ++..+...+.+++.|+ ++.+|||+|++ +|+..+..
T Consensus 11 ifkyiiigdmgvgkscllhqftekk--fmadcphtigvefgtriievsgqkiklqiwdtagqe---------rfravtrs 79 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKK--FMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE---------RFRAVTRS 79 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHH--HhhcCCcccceecceeEEEecCcEEEEEEeecccHH---------HHHHHHHH
Confidence 3789999999999999999998753 455555 3556666677777775 56699999998 89999999
Q ss_pred HHHhCCEEEEEEeCCCCCCHhHHHHHHHHHh------cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeec
Q psy17089 79 AIIESDIIIFIVDGRQGLVEQDKLITNFLRK------SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISAL 146 (419)
Q Consensus 79 ~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~------~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~ 146 (419)
+++++.+.++|+|.+++.+. -.+..||.. .+.-+++++||.|+...+.+ .+|. ..|+ .+++.||+
T Consensus 80 yyrgaagalmvyditrrsty--nhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl-~fle~sak 156 (215)
T KOG0097|consen 80 YYRGAAGALMVYDITRRSTY--NHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGL-MFLEASAK 156 (215)
T ss_pred HhccccceeEEEEehhhhhh--hhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCe-EEEEeccc
Confidence 99999999999998864332 234445543 35568999999999888776 3444 4555 78999999
Q ss_pred cCCCHHHHHHHHHHhcC
Q psy17089 147 YGNGIKNFLENILTIEL 163 (419)
Q Consensus 147 ~~~~v~~l~~~i~~~~~ 163 (419)
+|+|+++.|-.-.+.+.
T Consensus 157 tg~nvedafle~akkiy 173 (215)
T KOG0097|consen 157 TGQNVEDAFLETAKKIY 173 (215)
T ss_pred ccCcHHHHHHHHHHHHH
Confidence 99999988866555443
No 455
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.69 E-value=3.4e-16 Score=152.32 Aligned_cols=141 Identities=28% Similarity=0.414 Sum_probs=108.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceec--------------------------------CCCCCCccceEEEEEECCeE
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVA--------------------------------NYPGLTRDRHYGEGYIGKKS 51 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~--------------------------------~~~~~t~~~~~~~~~~~~~~ 51 (419)
+|+++|+.++|||||+++|+...+.+.. ...++|++.....+.+.+.+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 6999999999999999999754322111 12357788888888889999
Q ss_pred EEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCC-CEEEEEeccCCCCCCcc-
Q psy17089 52 FIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQ-PIVLVINKSENINSSIS- 129 (419)
Q Consensus 52 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~-p~ilv~NK~Dl~~~~~~- 129 (419)
+.+|||||+. .+...+...+..+|++++|+|+..+...++.+.+.++...+. ++++++||+|+......
T Consensus 82 ~~liDtPGh~---------~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~ 152 (406)
T TIGR02034 82 FIVADTPGHE---------QYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEV 152 (406)
T ss_pred EEEEeCCCHH---------HHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHH
Confidence 9999999987 555556667899999999999999988888877787777666 57889999999753321
Q ss_pred -----hh---HH-hcCC--CCeEEEeeccCCCHHH
Q psy17089 130 -----LD---FY-ELGI--GNPHIISALYGNGIKN 153 (419)
Q Consensus 130 -----~~---~~-~~~~--~~~~~vSa~~~~~v~~ 153 (419)
.+ +. ..++ .+++++||++|.|+++
T Consensus 153 ~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 153 FENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 11 11 2333 2589999999999875
No 456
>KOG1145|consensus
Probab=99.69 E-value=8.3e-16 Score=146.01 Aligned_cols=162 Identities=20% Similarity=0.258 Sum_probs=127.5
Q ss_pred ccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEE-eCeeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 179 SIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY-NNKKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 179 ~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
.++++-|-++|+...|||||+.+|-+... ..+..-|+|+......+.. +|+.++++||||+ ..|..++
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~V-AA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGH----------aAF~aMR 218 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSV-AAGEAGGITQHIGAFTVTLPSGKSITFLDTPGH----------AAFSAMR 218 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCce-ehhhcCCccceeceEEEecCCCCEEEEecCCcH----------HHHHHHH
Confidence 45788999999999999999999988754 3446678888776665554 6889999999999 6676666
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHH---cC-CCCCCcEEEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKK---LN-FLSFAMFNFI 333 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~ 333 (419)
+ +...-+|++++|+.+.++.-.|..+.+..+++.+.|+|+++||||....+- +....++... .. .-+..+++++
T Consensus 219 a-RGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~p-ekv~~eL~~~gi~~E~~GGdVQvipi 296 (683)
T KOG1145|consen 219 A-RGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANP-EKVKRELLSQGIVVEDLGGDVQVIPI 296 (683)
T ss_pred h-ccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCH-HHHHHHHHHcCccHHHcCCceeEEEe
Confidence 6 566778999999999999999999999999999999999999999864332 2232322211 11 1245789999
Q ss_pred eccCCCCHHHHHHHHHHHHh
Q psy17089 334 SAIKLNNINSFMESINHVYD 353 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~ 353 (419)
||++|.|++.|-+.+.-...
T Consensus 297 SAl~g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 297 SALTGENLDLLEEAILLLAE 316 (683)
T ss_pred ecccCCChHHHHHHHHHHHH
Confidence 99999999999888776543
No 457
>KOG1490|consensus
Probab=99.69 E-value=3.7e-16 Score=146.94 Aligned_cols=191 Identities=17% Similarity=0.178 Sum_probs=140.8
Q ss_pred ccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 179 SIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 179 ~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
+.....+.++|.||||||||+|.++..+ ..+.+|++||.....+++.++-..++++||||+.+.........+..+-.+
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtrad-vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITA 243 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRAD-DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITA 243 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccc-cccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence 3456789999999999999999998775 477899999999999999988889999999999877644434444444566
Q ss_pred HHHHhhcCEEEEEecCCC--CCCHHH-HHHHHHHHH--cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEE
Q psy17089 259 LKSILEANVVILLLDAQQ--NISAQD-INIANFIYE--SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~--~~~~~~-~~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (419)
+.+++.| |+|+.|.+. |.+..+ .+++..++. .++|+|+|+||+|+...+...+..+++-..+...+.++++.+
T Consensus 244 LAHLraa--VLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t 321 (620)
T KOG1490|consen 244 LAHLRSA--VLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT 321 (620)
T ss_pred HHHhhhh--heeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence 7777776 677777764 555544 356666655 689999999999998877665555555555555566899999
Q ss_pred eccCCCCHHHHHHHHHHHHhhc--CCCCCHHHHH-HHHHHHH
Q psy17089 334 SAIKLNNINSFMESINHVYDSS--IIHLSTSRIT-RALISAI 372 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~~--~~~~~~~~l~-~~l~~~~ 372 (419)
|+.+.+||.++....++.+... ..+..+...+ +.+....
T Consensus 322 S~~~eegVm~Vrt~ACe~LLa~RVE~Klks~~~~n~vlnr~h 363 (620)
T KOG1490|consen 322 SCVQEEGVMDVRTTACEALLAARVEQKLKSESRVNNVLNRIH 363 (620)
T ss_pred cccchhceeeHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 9999999999888888765433 2333333333 5554443
No 458
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.69 E-value=5.7e-16 Score=153.06 Aligned_cols=143 Identities=27% Similarity=0.355 Sum_probs=106.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceec--------------------------------CCCCCCccceEEEEEECCe
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVA--------------------------------NYPGLTRDRHYGEGYIGKK 50 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~--------------------------------~~~~~t~~~~~~~~~~~~~ 50 (419)
.+|+++|++++|||||+++|+...+.+.. ...++|.+.....+.+++.
T Consensus 28 ~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~~ 107 (474)
T PRK05124 28 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKR 107 (474)
T ss_pred eEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCCc
Confidence 48999999999999999999865433221 1124677877777888889
Q ss_pred EEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcC-CCEEEEEeccCCCCCCcc
Q psy17089 51 SFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSG-QPIVLVINKSENINSSIS 129 (419)
Q Consensus 51 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~-~p~ilv~NK~Dl~~~~~~ 129 (419)
++.+|||||+. .+.......+..+|++++|+|+..+...++.+.+.++...+ .|+++++||+|+......
T Consensus 108 ~i~~iDTPGh~---------~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 108 KFIIADTPGHE---------QYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred EEEEEECCCcH---------HHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhH
Confidence 99999999976 45555666689999999999999888777766666666555 478899999999753321
Q ss_pred ------hhH---H-hcC---CCCeEEEeeccCCCHHHH
Q psy17089 130 ------LDF---Y-ELG---IGNPHIISALYGNGIKNF 154 (419)
Q Consensus 130 ------~~~---~-~~~---~~~~~~vSa~~~~~v~~l 154 (419)
.++ . ..+ ..+++++||++|.|++++
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 111 1 122 246899999999998754
No 459
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.69 E-value=6.5e-16 Score=151.41 Aligned_cols=153 Identities=22% Similarity=0.254 Sum_probs=113.6
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCce------------------------------eeecCCCCccceeeeEeeEEeC
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENR------------------------------VITYDTPGTTRDSIKSLFEYNN 229 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~------------------------------~~~~~~~~~t~~~~~~~~~~~~ 229 (419)
.+.++|+++|+.++|||||+.+|+.... .......|+|.+.....++.++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 3568999999999999999999873110 0011233778887777788888
Q ss_pred eeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCC-------HHHHHHHHHHHHcCCc-EEEEEE
Q psy17089 230 KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNIS-------AQDINIANFIYESGRS-LIVCVN 301 (419)
Q Consensus 230 ~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~~-~iiv~N 301 (419)
..+.++||||+ +.|. ..+..++..+|++++|+|++.+.- .+..+.+..+...++| +|+|+|
T Consensus 85 ~~i~liDtPGh----------~df~-~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vN 153 (447)
T PLN00043 85 YYCTVIDAPGH----------RDFI-KNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCN 153 (447)
T ss_pred EEEEEEECCCH----------HHHH-HHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEE
Confidence 89999999999 5554 445578899999999999998631 3556777778788885 688999
Q ss_pred cccCCC----hhhHHHHHHHHHHHcCCCC----CCcEEEEeccCCCCHHH
Q psy17089 302 KWDSII----HNQRKIIKNNIKKKLNFLS----FAMFNFISAIKLNNINS 343 (419)
Q Consensus 302 K~Dl~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~SA~~g~gv~~ 343 (419)
|+|+.+ .....+..+++...+...+ .++++++||++|.|+.+
T Consensus 154 KmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 154 KMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred cccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 999863 2234445566666665443 36899999999999865
No 460
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.69 E-value=9.1e-16 Score=149.12 Aligned_cols=152 Identities=18% Similarity=0.196 Sum_probs=112.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCC------CCc---------eecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNS------RDA---------LVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKG 67 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~------~~~---------~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 67 (419)
.+|+++|+.++|||||+++|++. ... ......++|++.....+..++..+.+|||||+.
T Consensus 13 ~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~------ 86 (394)
T TIGR00485 13 VNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA------ 86 (394)
T ss_pred EEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH------
Confidence 36999999999999999999842 111 011235788888777776778899999999997
Q ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEE-EEEeccCCCCCCcc--------hhHH-hcCC
Q psy17089 68 IMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIV-LVINKSENINSSIS--------LDFY-ELGI 137 (419)
Q Consensus 68 ~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~i-lv~NK~Dl~~~~~~--------~~~~-~~~~ 137 (419)
.+...+...+..+|++++|+|+..+...++.+++.++...++|.+ +++||+|+....+. .++. ..+.
T Consensus 87 ---~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 87 ---DYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred ---HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 555666777889999999999999888888888899988899876 68999999764332 1122 2232
Q ss_pred ----CCeEEEeeccCC--------CHHHHHHHHHHhcC
Q psy17089 138 ----GNPHIISALYGN--------GIKNFLENILTIEL 163 (419)
Q Consensus 138 ----~~~~~vSa~~~~--------~v~~l~~~i~~~~~ 163 (419)
.+++++||++|. ++.++++++.+.++
T Consensus 164 ~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~ 201 (394)
T TIGR00485 164 PGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIP 201 (394)
T ss_pred CccCccEEECccccccccCCchhHhHHHHHHHHHhcCC
Confidence 368999999874 23456666655443
No 461
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.68 E-value=2.2e-15 Score=124.54 Aligned_cols=157 Identities=21% Similarity=0.196 Sum_probs=120.3
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeee------cCCCC---ccceeeeEeeEEeC-eeEEEEeCCCCCCCCcchHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVIT------YDTPG---TTRDSIKSLFEYNN-KKYILIDTAGIRRRNKTFEVI 250 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~------~~~~~---~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~ 250 (419)
...||++.|..++||||++.+++......+ ....+ +|...-...+.+++ ..+.|+|||||.++.
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~------ 82 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFK------ 82 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHH------
Confidence 567999999999999999999997653222 12223 55555556666665 799999999994443
Q ss_pred HHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcC-CcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCc
Q psy17089 251 EKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESG-RSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAM 329 (419)
Q Consensus 251 e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 329 (419)
.... ...+++.++|+++|.+.+.++.+..+++.+...+ +|+++++||.|+.+....+.+.+.+...+ ...|
T Consensus 83 ----fm~~-~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~ 154 (187)
T COG2229 83 ----FMWE-ILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLEL---LSVP 154 (187)
T ss_pred ----HHHH-HHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCc
Confidence 2333 4678899999999999999888888999999887 99999999999987665555555444332 3579
Q ss_pred EEEEeccCCCCHHHHHHHHHHH
Q psy17089 330 FNFISAIKLNNINSFMESINHV 351 (419)
Q Consensus 330 ~~~~SA~~g~gv~~l~~~i~~~ 351 (419)
+++++|.++.+..+.++.+...
T Consensus 155 vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 155 VIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeeeecccchhHHHHHHHHHhh
Confidence 9999999999999888777654
No 462
>PRK00049 elongation factor Tu; Reviewed
Probab=99.68 E-value=9e-16 Score=148.92 Aligned_cols=151 Identities=19% Similarity=0.200 Sum_probs=116.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC------ce---------ecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRD------AL---------VANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGI 68 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~------~~---------~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 68 (419)
+|+++|+.++|||||+++|++... .. .....++|++.....+..++.++.++||||+.
T Consensus 14 ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~------- 86 (396)
T PRK00049 14 NVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA------- 86 (396)
T ss_pred EEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH-------
Confidence 699999999999999999986310 00 11245788888777777778899999999985
Q ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEE-EEEeccCCCCCCcc--------hhHH-hcCC-
Q psy17089 69 MHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIV-LVINKSENINSSIS--------LDFY-ELGI- 137 (419)
Q Consensus 69 ~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~i-lv~NK~Dl~~~~~~--------~~~~-~~~~- 137 (419)
++.......+..+|++++|+|+..+....+.+++.++...++|.+ +++||+|+...... .+++ ..++
T Consensus 87 --~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 87 --DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred --HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 566667777899999999999999888888899999998899976 58999999753322 1111 2222
Q ss_pred ---CCeEEEeeccCC----------CHHHHHHHHHHhcC
Q psy17089 138 ---GNPHIISALYGN----------GIKNFLENILTIEL 163 (419)
Q Consensus 138 ---~~~~~vSa~~~~----------~v~~l~~~i~~~~~ 163 (419)
-+++++||+++. ++..|+++|.+.++
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 367999999875 46788888887655
No 463
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.68 E-value=8.4e-16 Score=149.59 Aligned_cols=152 Identities=22% Similarity=0.177 Sum_probs=108.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC--CceecCCCCCCccceEEEEEEC--------------------------CeEEEEE
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSR--DALVANYPGLTRDRHYGEGYIG--------------------------KKSFIII 55 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~--~~~~~~~~~~t~~~~~~~~~~~--------------------------~~~~~li 55 (419)
+|+++|+.++|||||+.+|.+.. ........+.|.+.......+. ...+.+|
T Consensus 11 ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~li 90 (411)
T PRK04000 11 NIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVSFV 90 (411)
T ss_pred EEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEEEE
Confidence 79999999999999999997631 1111122356655443222221 2578999
Q ss_pred EcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCC-CHhHHHHHHHHHhcCC-CEEEEEeccCCCCCCcc----
Q psy17089 56 DTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGL-VEQDKLITNFLRKSGQ-PIVLVINKSENINSSIS---- 129 (419)
Q Consensus 56 DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~-~~~~~~~~~~l~~~~~-p~ilv~NK~Dl~~~~~~---- 129 (419)
||||+. .+...+...+..+|++++|+|++++. .......+..+...+. |+++|+||+|+.+....
T Consensus 91 DtPG~~---------~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 91 DAPGHE---------TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred ECCCHH---------HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHH
Confidence 999986 56667777788899999999999876 5666666677766665 68999999999764432
Q ss_pred h---hHHhc---CCCCeEEEeeccCCCHHHHHHHHHHhcCC
Q psy17089 130 L---DFYEL---GIGNPHIISALYGNGIKNFLENILTIELP 164 (419)
Q Consensus 130 ~---~~~~~---~~~~~~~vSa~~~~~v~~l~~~i~~~~~~ 164 (419)
. .+... ...+++++||++|.|+++|++.|...++.
T Consensus 162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 1 11111 12367999999999999999999987764
No 464
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.68 E-value=6.6e-16 Score=158.78 Aligned_cols=141 Identities=28% Similarity=0.409 Sum_probs=107.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecC--------------------------------CCCCCccceEEEEEECCeE
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVAN--------------------------------YPGLTRDRHYGEGYIGKKS 51 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~--------------------------------~~~~t~~~~~~~~~~~~~~ 51 (419)
+|+++|++|+|||||+++|+...+.+... ..++|++.....+.+++.+
T Consensus 26 ~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~~ 105 (632)
T PRK05506 26 RFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKRK 105 (632)
T ss_pred EEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCce
Confidence 79999999999999999998755433311 1256777777788888999
Q ss_pred EEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcC-CCEEEEEeccCCCCCCcc-
Q psy17089 52 FIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSG-QPIVLVINKSENINSSIS- 129 (419)
Q Consensus 52 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~-~p~ilv~NK~Dl~~~~~~- 129 (419)
+.++||||+. .+.......+..+|++++|+|+..+...++.+.+.++...+ +|+++|+||+|+......
T Consensus 106 ~~liDtPG~~---------~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~ 176 (632)
T PRK05506 106 FIVADTPGHE---------QYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEV 176 (632)
T ss_pred EEEEECCChH---------HHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHH
Confidence 9999999986 44445556789999999999999888887777777777666 468889999999752221
Q ss_pred -----hhH---H-hcCC--CCeEEEeeccCCCHHH
Q psy17089 130 -----LDF---Y-ELGI--GNPHIISALYGNGIKN 153 (419)
Q Consensus 130 -----~~~---~-~~~~--~~~~~vSa~~~~~v~~ 153 (419)
.++ . ..++ .+++++||++|.|+++
T Consensus 177 ~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 177 FDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 111 1 3344 2589999999999873
No 465
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.68 E-value=1.4e-15 Score=146.21 Aligned_cols=163 Identities=25% Similarity=0.279 Sum_probs=116.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEE---------------------C---CeEEEEEEcC
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI---------------------G---KKSFIIIDTG 58 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~---------------------~---~~~~~liDtp 58 (419)
.+|+|+|.||||||||+|+|++.. +.+++++++|+++..+.+.+ + ..++.+||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~-~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 489999999999999999999875 45678899999988876552 1 2467899999
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCC------------CHh-H-------------------------
Q psy17089 59 GFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGL------------VEQ-D------------------------- 100 (419)
Q Consensus 59 G~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~------------~~~-~------------------------- 100 (419)
|+.... +..+.+...++..++++|++++|+|+.... .+. +
T Consensus 81 Gl~~ga--~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~ 158 (396)
T PRK09602 81 GLVPGA--HEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSR 158 (396)
T ss_pred CcCCCc--cchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 987543 112245567778899999999999985100 000 0
Q ss_pred ------------------------HHHHHHHHh------------------------cCCCEEEEEeccCCCCCCc-chh
Q psy17089 101 ------------------------KLITNFLRK------------------------SGQPIVLVINKSENINSSI-SLD 131 (419)
Q Consensus 101 ------------------------~~~~~~l~~------------------------~~~p~ilv~NK~Dl~~~~~-~~~ 131 (419)
..+.+.|+. ..+|+++|+||+|+..... ..+
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~l~~ 238 (396)
T PRK09602 159 KAQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEENIER 238 (396)
T ss_pred HHhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHHHHH
Confidence 001111211 2479999999999764333 233
Q ss_pred HHhcCCCCeEEEeeccCCCHHH-HHHHHHHhcCCcchh
Q psy17089 132 FYELGIGNPHIISALYGNGIKN-FLENILTIELPYKKF 168 (419)
Q Consensus 132 ~~~~~~~~~~~vSa~~~~~v~~-l~~~i~~~~~~~~~~ 168 (419)
+...+...++++||+.+.++++ +.+.+.+.+|+.+.+
T Consensus 239 i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~ 276 (396)
T PRK09602 239 LKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDF 276 (396)
T ss_pred HHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCcc
Confidence 3333566899999999999999 889999999988654
No 466
>PRK13351 elongation factor G; Reviewed
Probab=99.68 E-value=7.5e-16 Score=160.12 Aligned_cols=117 Identities=21% Similarity=0.252 Sum_probs=92.5
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceee-----------ec------CCCCccceeeeEeeEEeCeeEEEEeCCCCCCC
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVI-----------TY------DTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~-----------~~------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 243 (419)
...+|+++|+.|+|||||+++|+...... .. ...+.|.......+.+.+..+.+|||||+.++
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 45799999999999999999998431100 00 12355666666677888899999999999433
Q ss_pred CcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCCh
Q psy17089 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIH 308 (419)
Q Consensus 244 ~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~ 308 (419)
. .....+++.+|++++|+|++++...+...+++.+...++|+++|+||+|+...
T Consensus 87 ----------~-~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 87 ----------T-GEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGA 140 (687)
T ss_pred ----------H-HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC
Confidence 2 33457889999999999999998888888888888899999999999998753
No 467
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.67 E-value=1.1e-15 Score=154.15 Aligned_cols=147 Identities=29% Similarity=0.387 Sum_probs=104.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCC-CCCccceEEEEEEC------C------------eEEEEEEcCCCCCc
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYP-GLTRDRHYGEGYIG------K------------KSFIIIDTGGFEPE 63 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~-~~t~~~~~~~~~~~------~------------~~~~liDtpG~~~~ 63 (419)
|.|+++|++|+|||||+|+|.+... ....+ +.|++.....+.+. + ..+.+|||||++
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v--~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e-- 82 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAV--AAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE-- 82 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCccc--ccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH--
Confidence 7899999999999999999987542 22222 23333221111110 0 127899999997
Q ss_pred chhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCc---------------
Q psy17089 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSI--------------- 128 (419)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~--------------- 128 (419)
.+.......+..+|++++|+|++++........+.+++..++|+++++||+|+.....
T Consensus 83 -------~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~ 155 (586)
T PRK04004 83 -------AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS 155 (586)
T ss_pred -------HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence 5555556677899999999999988888888888888888999999999999852110
Q ss_pred --c-h-----------hHHhcC--------------CCCeEEEeeccCCCHHHHHHHHHH
Q psy17089 129 --S-L-----------DFYELG--------------IGNPHIISALYGNGIKNFLENILT 160 (419)
Q Consensus 129 --~-~-----------~~~~~~--------------~~~~~~vSa~~~~~v~~l~~~i~~ 160 (419)
. . .+...| .-+++++||++|.|+++|+..+..
T Consensus 156 ~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 156 QRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 0 0 011112 235799999999999999988753
No 468
>PLN00023 GTP-binding protein; Provisional
Probab=99.67 E-value=1.1e-15 Score=140.46 Aligned_cols=117 Identities=21% Similarity=0.213 Sum_probs=83.4
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEe---------------CeeEEEEeCCCCCCCC
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN---------------NKKYILIDTAGIRRRN 244 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~~~liDtpG~~~~~ 244 (419)
...+||+++|..|||||||+++|.+... .....+++..+.....+.++ ...+.||||+|+
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F-~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGq---- 93 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSS-IARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGH---- 93 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCc-ccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCC----
Confidence 3568999999999999999999997642 22223333333333434432 135788999999
Q ss_pred cchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHHc---------------CCcEEEEEEcccCCCh
Q psy17089 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDI-NIANFIYES---------------GRSLIVCVNKWDSIIH 308 (419)
Q Consensus 245 ~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~~---------------~~~~iiv~NK~Dl~~~ 308 (419)
|+|..... .+++.+|++|+|+|+++..++.++ .|++.+... ++|++||+||+||...
T Consensus 94 ------ErfrsL~~-~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 94 ------ERYKDCRS-LFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred ------hhhhhhhH-HhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 44543333 578999999999999998777776 355655542 3789999999999654
No 469
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.67 E-value=1.4e-15 Score=139.31 Aligned_cols=116 Identities=21% Similarity=0.369 Sum_probs=89.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcee---------------cCC------CCCCccceEEEEEECCeEEEEEEcCCC
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALV---------------ANY------PGLTRDRHYGEGYIGKKSFIIIDTGGF 60 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~---------------~~~------~~~t~~~~~~~~~~~~~~~~liDtpG~ 60 (419)
.++|+|+|++|+|||||+++|+...+.+. .++ .+.+.......+.+.+..+.+|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 36899999999999999999985432211 111 123334455578889999999999999
Q ss_pred CCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCC
Q psy17089 61 EPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINS 126 (419)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~ 126 (419)
. .+......+++.+|++++|+|+..+.......+++.+...++|+++++||+|+...
T Consensus 82 ~---------df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 82 E---------DFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred h---------HHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCC
Confidence 7 45555667789999999999998877766677777777789999999999997543
No 470
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.67 E-value=2.4e-15 Score=144.71 Aligned_cols=167 Identities=22% Similarity=0.191 Sum_probs=113.9
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEE------------------------eCeeEEEEeCC
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY------------------------NNKKYILIDTA 238 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~------------------------~~~~~~liDtp 238 (419)
++|+++|.||||||||+|+|++.. +.++++|++|+++..+.... ...++.+||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~-~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 689999999999999999999885 46789999998887765442 12467899999
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCC------------C-HHHHH---------------------
Q psy17089 239 GIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNI------------S-AQDIN--------------------- 284 (419)
Q Consensus 239 G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~------------~-~~~~~--------------------- 284 (419)
|+....... +-.....+..++.||++++|+|+.... . ..+.+
T Consensus 81 Gl~~ga~~g----~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~ 156 (396)
T PRK09602 81 GLVPGAHEG----RGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKF 156 (396)
T ss_pred CcCCCccch----hhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 986543211 112346678899999999999997211 0 11100
Q ss_pred ----------------------------HHHHHHH------------------------cCCcEEEEEEcccCCChhhHH
Q psy17089 285 ----------------------------IANFIYE------------------------SGRSLIVCVNKWDSIIHNQRK 312 (419)
Q Consensus 285 ----------------------------~~~~~~~------------------------~~~~~iiv~NK~Dl~~~~~~~ 312 (419)
+.+.+.+ ..+|+++|+||+|+.....
T Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~-- 234 (396)
T PRK09602 157 SRKAQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEE-- 234 (396)
T ss_pred HHHHhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchH--
Confidence 0000110 2389999999999764222
Q ss_pred HHHHHHHHHcCCCCCCcEEEEeccCCCCHHH-HHHHHHHHHhhcCCCCCH
Q psy17089 313 IIKNNIKKKLNFLSFAMFNFISAIKLNNINS-FMESINHVYDSSIIHLST 361 (419)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~-l~~~i~~~~~~~~~~~~~ 361 (419)
....+.+. ++..++++||+.+.++++ +.+.+.+.++.....++.
T Consensus 235 -~l~~i~~~----~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~ 279 (396)
T PRK09602 235 -NIERLKEE----KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEIL 279 (396)
T ss_pred -HHHHHHhc----CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCcc
Confidence 11222222 456799999999999999 788888877766544443
No 471
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.67 E-value=3.1e-15 Score=134.07 Aligned_cols=162 Identities=21% Similarity=0.192 Sum_probs=105.6
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEe--CeeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN--NKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
.+||+++|.+|||||||+++|.+...... ..++.+........... ..++.+|||+|+ +++.... .
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq----------~~~~~~~-~ 72 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEG-YPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQ----------EEYRSLR-P 72 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCccc-CCCceeeeeEEEEEEeCCCEEEEEeecCCCH----------HHHHHHH-H
Confidence 38999999999999999999998753221 22222333222222222 346788999999 5554333 3
Q ss_pred HHHhhcCEEEEEecCCCCCCHHH--HHHHHHHHHc---CCcEEEEEEcccCCChhhHHH-----------HHHHH-HHHc
Q psy17089 260 KSILEANVVILLLDAQQNISAQD--INIANFIYES---GRSLIVCVNKWDSIIHNQRKI-----------IKNNI-KKKL 322 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~--~~~~~~~~~~---~~~~iiv~NK~Dl~~~~~~~~-----------~~~~~-~~~~ 322 (419)
.++..++++++++|.+......+ ..|...+... +.|+++|+||+|+........ ..... ....
T Consensus 73 ~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (219)
T COG1100 73 EYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVL 152 (219)
T ss_pred HHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhh
Confidence 68899999999999997433333 2455555553 589999999999976532111 00000 0011
Q ss_pred CCCCCCcEEEEecc--CCCCHHHHHHHHHHHHhhc
Q psy17089 323 NFLSFAMFNFISAI--KLNNINSFMESINHVYDSS 355 (419)
Q Consensus 323 ~~~~~~~~~~~SA~--~g~gv~~l~~~i~~~~~~~ 355 (419)
.......++++||+ ++.++.++|..+...+...
T Consensus 153 ~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~ 187 (219)
T COG1100 153 PEVANPALLETSAKSLTGPNVNELFKELLRKLLEE 187 (219)
T ss_pred hhhcccceeEeecccCCCcCHHHHHHHHHHHHHHh
Confidence 11112338999999 9999999999998887543
No 472
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.67 E-value=1.3e-15 Score=135.78 Aligned_cols=152 Identities=22% Similarity=0.307 Sum_probs=103.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCcee------------c------CCCCCCccceEEEEEEC-----CeEEEEEEcCC
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALV------------A------NYPGLTRDRHYGEGYIG-----KKSFIIIDTGG 59 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~------------~------~~~~~t~~~~~~~~~~~-----~~~~~liDtpG 59 (419)
++|+++|++|+|||||+++|+....... . ...++|.+.....+.+. ...+.+|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 5799999999999999999987543211 0 11233443333333332 36788999999
Q ss_pred CCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCc------c----
Q psy17089 60 FEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSI------S---- 129 (419)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~------~---- 129 (419)
+. .+......++..+|++++|+|+..+.......+.+.+...++|+++|+||+|+...+. .
T Consensus 81 ~~---------~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~~~l 151 (213)
T cd04167 81 HV---------NFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKL 151 (213)
T ss_pred Cc---------chHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHHHHH
Confidence 97 4455667788999999999999887776666666666666899999999999862211 0
Q ss_pred hh-------HH-hcCC----------CCeEEEeeccCCCHH--------HHHHHHHHhcC
Q psy17089 130 LD-------FY-ELGI----------GNPHIISALYGNGIK--------NFLENILTIEL 163 (419)
Q Consensus 130 ~~-------~~-~~~~----------~~~~~vSa~~~~~v~--------~l~~~i~~~~~ 163 (419)
.+ +. ..+. ..++..||+.+.+.+ +|++.|.+.+|
T Consensus 152 ~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~ 211 (213)
T cd04167 152 RHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIP 211 (213)
T ss_pred HHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCC
Confidence 00 01 1111 236678999888766 77777766554
No 473
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.66 E-value=1.4e-15 Score=133.78 Aligned_cols=157 Identities=15% Similarity=0.117 Sum_probs=105.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecC-CC---CCCccceEEEEEE-CCeEEEEEEcCCCCCcchhhHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVAN-YP---GLTRDRHYGEGYI-GKKSFIIIDTGGFEPEVKKGIMHEMTKQTK 77 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~-~~---~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 77 (419)
.+|+++|++|||||||+|+|+|........ .. .+|..... +.. ....+.+|||||+.+... ..+.+.. .
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~l~l~DtpG~~~~~~--~~~~~l~--~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTP--YPHPKFPNVTLWDLPGIGSTAF--PPDDYLE--E 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCcee--eecCCCCCceEEeCCCCCcccC--CHHHHHH--H
Confidence 589999999999999999999853211111 11 12332221 111 134789999999974321 1112211 1
Q ss_pred HHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCc-----------c--h-------hHH-h--
Q psy17089 78 QAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSI-----------S--L-------DFY-E-- 134 (419)
Q Consensus 78 ~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~-----------~--~-------~~~-~-- 134 (419)
..+.++|++++|.+ .+++..+.++++++++.++|+++|+||+|+..... . . +.. .
T Consensus 76 ~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 76 MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 23567898888854 45788889999999998999999999999854211 1 0 111 1
Q ss_pred cCCCCeEEEeec--cCCCHHHHHHHHHHhcCCcch
Q psy17089 135 LGIGNPHIISAL--YGNGIKNFLENILTIELPYKK 167 (419)
Q Consensus 135 ~~~~~~~~vSa~--~~~~v~~l~~~i~~~~~~~~~ 167 (419)
....++|.+|+. .++++..|.+.|...+|+...
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 234578999998 679999999999999987654
No 474
>PRK12739 elongation factor G; Reviewed
Probab=99.66 E-value=1.9e-15 Score=156.64 Aligned_cols=115 Identities=20% Similarity=0.251 Sum_probs=98.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCce-----ec------------CCCCCCccceEEEEEECCeEEEEEEcCCCCCcch
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDAL-----VA------------NYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK 65 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~-----~~------------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 65 (419)
++|+|+|++|+|||||+++|+...+.. +. ...++|++.....+.+++.++.+|||||+.
T Consensus 9 rni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~---- 84 (691)
T PRK12739 9 RNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV---- 84 (691)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH----
Confidence 589999999999999999997532211 11 245789999999999999999999999986
Q ss_pred hhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCC
Q psy17089 66 KGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINS 126 (419)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~ 126 (419)
.+...+..++..+|++++|+|+..+....+..++..+.+.++|.++++||+|+...
T Consensus 85 -----~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 85 -----DFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred -----HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 45556788899999999999999999999999999999899999999999998753
No 475
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.66 E-value=2.3e-15 Score=132.85 Aligned_cols=110 Identities=18% Similarity=0.333 Sum_probs=72.9
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEE----eCeeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY----NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
+|+++|.+|+|||||+++|.+... ....+.++.. ...+.. .+..+.+|||||+ ++++ ....
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~--~~t~~s~~~~--~~~~~~~~~~~~~~~~l~D~pG~----------~~~~-~~~~ 66 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKY--RSTVTSIEPN--VATFILNSEGKGKKFRLVDVPGH----------PKLR-DKLL 66 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC--CCccCcEeec--ceEEEeecCCCCceEEEEECCCC----------HHHH-HHHH
Confidence 689999999999999999997642 1122222221 122222 2568999999999 3443 2234
Q ss_pred HHHhhc-CEEEEEecCCCCC-CHHHH-HHH-HHHH-----HcCCcEEEEEEcccCCCh
Q psy17089 260 KSILEA-NVVILLLDAQQNI-SAQDI-NIA-NFIY-----ESGRSLIVCVNKWDSIIH 308 (419)
Q Consensus 260 ~~~~~a-d~~i~v~d~~~~~-~~~~~-~~~-~~~~-----~~~~~~iiv~NK~Dl~~~ 308 (419)
.+++.+ +++|+|+|+++.. +..+. .++ ..+. ..+.|+++|+||+|+...
T Consensus 67 ~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 67 ETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred HHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 678888 9999999999862 22221 222 2221 148999999999998653
No 476
>KOG4252|consensus
Probab=99.66 E-value=4.8e-17 Score=132.43 Aligned_cols=160 Identities=20% Similarity=0.168 Sum_probs=114.9
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEE--eCeeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY--NNKKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
+.-+|++++|..+|||||+++++... .+.......+..++....... .+...++|||+|+ |+|- ..
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkg-ifTkdykktIgvdflerqi~v~~Edvr~mlWdtagq----------eEfD-aI 85 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQ----------EEFD-AI 85 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhcc-ccccccccccchhhhhHHHHhhHHHHHHHHHHhccc----------hhHH-HH
Confidence 46699999999999999999999843 222222223334443333333 3457778999999 4432 34
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH--cCCcEEEEEEcccCCChhhHH-HHHHHHHHHcCCCCCCcEEEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE--SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 333 (419)
+..|+++|.+.++|+..++..+++.. .|.+.+.. ..+|.++|-||+|++++.... ...+.+.+.+. +.++.+
T Consensus 86 tkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~----~RlyRt 161 (246)
T KOG4252|consen 86 TKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLH----KRLYRT 161 (246)
T ss_pred HHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhh----hhhhhh
Confidence 55799999999999999999887775 45555554 579999999999998765532 12222333332 678999
Q ss_pred eccCCCCHHHHHHHHHHHHhhc
Q psy17089 334 SAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
|+++..|+.+.|..+++.+...
T Consensus 162 Svked~NV~~vF~YLaeK~~q~ 183 (246)
T KOG4252|consen 162 SVKEDFNVMHVFAYLAEKLTQQ 183 (246)
T ss_pred hhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999876553
No 477
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.66 E-value=4.7e-15 Score=147.81 Aligned_cols=116 Identities=20% Similarity=0.304 Sum_probs=89.4
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceee-----e----------c------CCCCccceeeeEeeEEeCeeEEEEeCC
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVI-----T----------Y------DTPGTTRDSIKSLFEYNNKKYILIDTA 238 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~-----~----------~------~~~~~t~~~~~~~~~~~~~~~~liDtp 238 (419)
.+..+|+++|++|+|||||+++|+...... + . ...|.+.......+++++..+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 356799999999999999999986321110 1 0 112455555566778888999999999
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCC
Q psy17089 239 GIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSI 306 (419)
Q Consensus 239 G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~ 306 (419)
|+.+ |. ..+..+++.+|++++|+|++.+...+...+++.+...++|+++++||+|+.
T Consensus 89 G~~d----------f~-~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~ 145 (527)
T TIGR00503 89 GHED----------FS-EDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRD 145 (527)
T ss_pred Chhh----------HH-HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 9943 32 334567889999999999999887777788888888899999999999985
No 478
>KOG0393|consensus
Probab=99.66 E-value=2e-16 Score=134.61 Aligned_cols=163 Identities=17% Similarity=0.120 Sum_probs=117.4
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEe-CeeE--EEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN-NKKY--ILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~--~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
..+|+++||+.++|||+|+..+... .++ ..+.+|--+.+...+..+ |+.+ .+|||+||.+.. ..+
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~-~fp-~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYD----------rlR 70 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTN-AFP-EEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYD----------RLR 70 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccC-cCc-ccccCeEEccceEEEEecCCCEEEEeeeecCCCcccc----------ccc
Confidence 4589999999999999999988855 333 344444447777777884 7755 469999995543 233
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEEcccCCChhhH-HHH---------HHHHHHHcC
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQR-KII---------KNNIKKKLN 323 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~-~~~---------~~~~~~~~~ 323 (419)
.+ .+..+|++++++++.++.++.+. +|+-.+.. .+.|+|+|++|.||.++... +.. .++..+...
T Consensus 71 pl-sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~ 149 (198)
T KOG0393|consen 71 PL-SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAK 149 (198)
T ss_pred cc-CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHH
Confidence 43 78899999999999999888874 46666655 57999999999999743211 111 112222223
Q ss_pred CCCCCcEEEEeccCCCCHHHHHHHHHHHHhhcC
Q psy17089 324 FLSFAMFNFISAIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 324 ~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 356 (419)
..+-..++++||++..|+.+.|+..........
T Consensus 150 ~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 150 EIGAVKYLECSALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred HhCcceeeeehhhhhCCcHHHHHHHHHHHhccc
Confidence 344478999999999999999998888765543
No 479
>KOG0075|consensus
Probab=99.66 E-value=1.4e-15 Score=119.95 Aligned_cols=160 Identities=18% Similarity=0.114 Sum_probs=110.7
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
.++.+.++|-.++|||||+|.....+. ..+-+.|..+....+.-.+..+.+||.||+..+..+| ..
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~---~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmW-----------er 84 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQY---LEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMW-----------ER 84 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccc---hhhhcccccceeEEeccCceEEEEEecCCCccHHHHH-----------HH
Confidence 347899999999999999998764321 2233445555555555556789999999996665333 26
Q ss_pred HHhhcCEEEEEecCCCCCCHHH--HHHHHHHHH---cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 261 SILEANVVILLLDAQQNISAQD--INIANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
|++.++++++++|+.++..-+. .++...+.+ .++|+++.+||.|+.+.-....+.+.+.-.--..+.+-.|.+|+
T Consensus 85 ycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siSc 164 (186)
T KOG0075|consen 85 YCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISC 164 (186)
T ss_pred HhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEE
Confidence 8899999999999998533222 223333332 68999999999999765444444443322111223345799999
Q ss_pred cCCCCHHHHHHHHHHHHhh
Q psy17089 336 IKLNNINSFMESINHVYDS 354 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~ 354 (419)
++..|++-+.+++.+....
T Consensus 165 ke~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 165 KEKVNIDITLDWLIEHSKS 183 (186)
T ss_pred cCCccHHHHHHHHHHHhhh
Confidence 9999999999999987654
No 480
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.66 E-value=1.9e-15 Score=126.36 Aligned_cols=143 Identities=22% Similarity=0.161 Sum_probs=99.0
Q ss_pred EEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEEC--CeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCC
Q psy17089 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG--KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESD 84 (419)
Q Consensus 7 ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d 84 (419)
|+|++|+|||||+|+|.+.... ......+..+......... +..+.+|||||+. ............+|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~~~~~~ 70 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQE---------RFRSLRRLYYRGAD 70 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC-CcccccchhheeeEEEEECCEEEEEEEEecCChH---------HHHhHHHHHhcCCC
Confidence 5899999999999999986532 1222222234443334432 5678999999987 33333466788999
Q ss_pred EEEEEEeCCCCCCHhHHHH-----HHHHHhcCCCEEEEEeccCCCCCCcc-hh-----HHhcCCCCeEEEeeccCCCHHH
Q psy17089 85 IIIFIVDGRQGLVEQDKLI-----TNFLRKSGQPIVLVINKSENINSSIS-LD-----FYELGIGNPHIISALYGNGIKN 153 (419)
Q Consensus 85 ~il~v~d~~~~~~~~~~~~-----~~~l~~~~~p~ilv~NK~Dl~~~~~~-~~-----~~~~~~~~~~~vSa~~~~~v~~ 153 (419)
++++|+|+.++........ .......+.|+++|+||+|+...... .. .......+++++|+..+.|+++
T Consensus 71 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 150 (157)
T cd00882 71 GIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEE 150 (157)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHH
Confidence 9999999987544443221 12223368899999999999876654 11 1233345889999999999999
Q ss_pred HHHHHH
Q psy17089 154 FLENIL 159 (419)
Q Consensus 154 l~~~i~ 159 (419)
++++|.
T Consensus 151 ~~~~l~ 156 (157)
T cd00882 151 LFEELA 156 (157)
T ss_pred HHHHHh
Confidence 999875
No 481
>PLN03126 Elongation factor Tu; Provisional
Probab=99.66 E-value=3.7e-15 Score=146.69 Aligned_cols=137 Identities=20% Similarity=0.237 Sum_probs=107.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCce---------------ecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDAL---------------VANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGI 68 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 68 (419)
+|+++|++++|||||+++|++....+ .....++|.+.....+.+.+..+.+|||||+.
T Consensus 83 ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~------- 155 (478)
T PLN03126 83 NIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA------- 155 (478)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHH-------
Confidence 69999999999999999999632211 12234778888777788889999999999997
Q ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCC-EEEEEeccCCCCCCcc--------hhHH-hcCC-
Q psy17089 69 MHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQP-IVLVINKSENINSSIS--------LDFY-ELGI- 137 (419)
Q Consensus 69 ~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p-~ilv~NK~Dl~~~~~~--------~~~~-~~~~- 137 (419)
.+.......+..+|++++|+|+..+...+..+++..+...++| +++++||+|+....+. .+++ ..++
T Consensus 156 --~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 156 --DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP 233 (478)
T ss_pred --HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 5666777788899999999999999889988899999888998 6789999999764332 1122 2222
Q ss_pred ---CCeEEEeeccCC
Q psy17089 138 ---GNPHIISALYGN 149 (419)
Q Consensus 138 ---~~~~~vSa~~~~ 149 (419)
-+++++||.+|.
T Consensus 234 ~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 234 GDDIPIISGSALLAL 248 (478)
T ss_pred cCcceEEEEEccccc
Confidence 357899998874
No 482
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.66 E-value=5.4e-15 Score=131.36 Aligned_cols=180 Identities=16% Similarity=0.209 Sum_probs=118.1
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeec-CCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITY-DTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~ 261 (419)
++|+++|.+|+||||++|.++|.+.+... ...++|..........+|..+.++||||+.+.....+.+.+.........
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 58999999999999999999999876554 23456677767777889999999999999776544322222111112223
Q ss_pred HhhcCEEEEEecCCCCCCHHHHHHHHHHHH-cC----CcEEEEEEcccCCChhhHHHHHH-----HHHHHcCCCCCCcEE
Q psy17089 262 ILEANVVILLLDAQQNISAQDINIANFIYE-SG----RSLIVCVNKWDSIIHNQRKIIKN-----NIKKKLNFLSFAMFN 331 (419)
Q Consensus 262 ~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~-~~----~~~iiv~NK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 331 (419)
..+.|++++|++.+ +++..+...++.+.+ .+ .-+++|.+.+|...+...+++.+ .+.+.+..+++ .++
T Consensus 81 ~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~-R~~ 158 (212)
T PF04548_consen 81 SPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGG-RYH 158 (212)
T ss_dssp TT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT-CEE
T ss_pred cCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCC-EEE
Confidence 45689999999999 888889888887775 22 45899999999876654433322 34455555554 566
Q ss_pred EEecc------CCCCHHHHHHHHHHHHhhcCCCCCHHHH
Q psy17089 332 FISAI------KLNNINSFMESINHVYDSSIIHLSTSRI 364 (419)
Q Consensus 332 ~~SA~------~g~gv~~l~~~i~~~~~~~~~~~~~~~l 364 (419)
..+.+ ....+.+|++.+.+...+......+..+
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~ 197 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEM 197 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HH
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHH
Confidence 56655 3357899999999998887755444433
No 483
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.66 E-value=4.6e-15 Score=132.93 Aligned_cols=143 Identities=22% Similarity=0.296 Sum_probs=102.8
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCc-eeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGEN-RVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
.++..|+++|.+|+|||||+|.|.+.. ........|+ . ......+.++.++||||.. ...
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i-~i~~~~~~~i~~vDtPg~~--------------~~~ 97 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----I-TVVTGKKRRLTFIECPNDI--------------NAM 97 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----E-EEEecCCceEEEEeCCchH--------------HHH
Confidence 467889999999999999999998752 2122222332 1 1122357889999999861 223
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEE-EEEEcccCCChh-hHHHHHHHHHHHcC--CCCCCcEEEEe
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLI-VCVNKWDSIIHN-QRKIIKNNIKKKLN--FLSFAMFNFIS 334 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i-iv~NK~Dl~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~S 334 (419)
...++.+|++++|+|++.+...++..++..+...+.|.+ +|+||+|+.... ......+.+++.+. ...+.+++++|
T Consensus 98 l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iS 177 (225)
T cd01882 98 IDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLS 177 (225)
T ss_pred HHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEe
Confidence 355688999999999999888888889999988888855 499999997433 23444555554333 44568999999
Q ss_pred ccCCCCH
Q psy17089 335 AIKLNNI 341 (419)
Q Consensus 335 A~~g~gv 341 (419)
|++...+
T Consensus 178 a~~~~~~ 184 (225)
T cd01882 178 GIVHGRY 184 (225)
T ss_pred eccCCCC
Confidence 9987543
No 484
>PRK00007 elongation factor G; Reviewed
Probab=99.66 E-value=2.9e-15 Score=155.23 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=97.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCce-----ec------------CCCCCCccceEEEEEECCeEEEEEEcCCCCCcch
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDAL-----VA------------NYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK 65 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~-----~~------------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 65 (419)
++|+|+|++|+|||||+|+|+...+.. +. ...++|++.....+.|.+..+.++||||+.
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~---- 86 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV---- 86 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH----
Confidence 589999999999999999997422211 11 245789999899999999999999999986
Q ss_pred hhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCC
Q psy17089 66 KGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENIN 125 (419)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~ 125 (419)
.+......++..+|++++|+|+..+...++..++..+.+.++|.++++||+|+..
T Consensus 87 -----~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 87 -----DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTG 141 (693)
T ss_pred -----HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 4445577889999999999999999999999999999999999999999999864
No 485
>KOG0462|consensus
Probab=99.65 E-value=8.4e-16 Score=146.05 Aligned_cols=155 Identities=21% Similarity=0.296 Sum_probs=126.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCce--------------ecCCCCCCccceEEEEEECC---eEEEEEEcCCCCCcch
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDAL--------------VANYPGLTRDRHYGEGYIGK---KSFIIIDTGGFEPEVK 65 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~---~~~~liDtpG~~~~~~ 65 (419)
+++.|+-+..-|||||..+|+...+++ +....|+|...+...+.+.+ ..+++|||||+.+
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD--- 137 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD--- 137 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc---
Confidence 689999999999999999997644422 22345788888888877766 7788999999994
Q ss_pred hhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc------hhHHhcCCCC
Q psy17089 66 KGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS------LDFYELGIGN 139 (419)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~------~~~~~~~~~~ 139 (419)
|.......+.-|+++++|+|+.+++..+...-....-+.+..+|.|+||+|+...+.. .+.+.....+
T Consensus 138 ------Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~ 211 (650)
T KOG0462|consen 138 ------FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAE 211 (650)
T ss_pred ------ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccc
Confidence 4456667788999999999999999988866666555679999999999999988765 3445566678
Q ss_pred eEEEeeccCCCHHHHHHHHHHhcCCcc
Q psy17089 140 PHIISALYGNGIKNFLENILTIELPYK 166 (419)
Q Consensus 140 ~~~vSa~~~~~v~~l~~~i~~~~~~~~ 166 (419)
++.+||++|.|+++++++|.+.+|+-.
T Consensus 212 ~i~vSAK~G~~v~~lL~AII~rVPpP~ 238 (650)
T KOG0462|consen 212 VIYVSAKTGLNVEELLEAIIRRVPPPK 238 (650)
T ss_pred eEEEEeccCccHHHHHHHHHhhCCCCC
Confidence 999999999999999999999988653
No 486
>KOG0081|consensus
Probab=99.65 E-value=1.8e-16 Score=126.54 Aligned_cols=148 Identities=18% Similarity=0.189 Sum_probs=109.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEEC---------C--eEEEEEEcCCCCCcchhhHHHHH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG---------K--KSFIIIDTGGFEPEVKKGIMHEM 72 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~---------~--~~~~liDtpG~~~~~~~~~~~~~ 72 (419)
|.+.+|++||||||++.++...+ +...-..++.+|....++.++ + ..+++|||+|++ +|
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~-F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQE---------RF 80 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGK-FNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQE---------RF 80 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCc-ccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHH---------HH
Confidence 56789999999999999988653 212223346677777666652 1 256699999998 89
Q ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHh-------cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCC
Q psy17089 73 TKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRK-------SGQPIVLVINKSENINSSIS-----LDFY-ELGIGN 139 (419)
Q Consensus 73 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~-------~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~ 139 (419)
+..+....+.|=+.++++|.+...+. ..+.+|+.. -+.-+++++||+|+.+.+.+ .++. ..|+ +
T Consensus 81 RSLTTAFfRDAMGFlLiFDlT~eqSF--LnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kygl-P 157 (219)
T KOG0081|consen 81 RSLTTAFFRDAMGFLLIFDLTSEQSF--LNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGL-P 157 (219)
T ss_pred HHHHHHHHHhhccceEEEeccchHHH--HHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCC-C
Confidence 99999999999999999998763332 333344432 24568999999999988876 1222 4566 8
Q ss_pred eEEEeeccCCCHHHHHHHHHHhcCC
Q psy17089 140 PHIISALYGNGIKNFLENILTIELP 164 (419)
Q Consensus 140 ~~~vSa~~~~~v~~l~~~i~~~~~~ 164 (419)
+|++||-+|.|+++..+.+...+.+
T Consensus 158 YfETSA~tg~Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 158 YFETSACTGTNVEKAVELLLDLVMK 182 (219)
T ss_pred eeeeccccCcCHHHHHHHHHHHHHH
Confidence 9999999999999887777655443
No 487
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.65 E-value=3.7e-15 Score=130.80 Aligned_cols=115 Identities=18% Similarity=0.176 Sum_probs=80.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEEC-----C--eEEEEEEcCCCCCcchhhHHHHHHHHH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG-----K--KSFIIIDTGGFEPEVKKGIMHEMTKQT 76 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-----~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 76 (419)
||+++|++|||||||+++|++.. +.....+++..+.......++ + ..+.+|||+|++ ++....
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~-f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e---------~~~~l~ 71 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQ-VLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE---------SVKSTR 71 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC-CCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch---------hHHHHH
Confidence 79999999999999999999764 212223333333434444542 2 357799999997 566667
Q ss_pred HHHHHhCCEEEEEEeCCCCCCHhH--HHHHHHHHh---------------------cCCCEEEEEeccCCCCCCc
Q psy17089 77 KQAIIESDIIIFIVDGRQGLVEQD--KLITNFLRK---------------------SGQPIVLVINKSENINSSI 128 (419)
Q Consensus 77 ~~~~~~~d~il~v~d~~~~~~~~~--~~~~~~l~~---------------------~~~p~ilv~NK~Dl~~~~~ 128 (419)
..+++++|++++|+|.+++.+... .|+.+.... .+.|+++|+||+|+...+.
T Consensus 72 ~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~ 146 (202)
T cd04102 72 AVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKE 146 (202)
T ss_pred HHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcc
Confidence 778999999999999887544333 343333331 2579999999999976543
No 488
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.65 E-value=6.7e-15 Score=135.55 Aligned_cols=152 Identities=19% Similarity=0.249 Sum_probs=101.5
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeecC--------CCCc-cceeeeEeeEEeCe--eEEEEeCCCCCCCCcc---h
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYD--------TPGT-TRDSIKSLFEYNNK--KYILIDTAGIRRRNKT---F 247 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~~--------~~~~-t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~---~ 247 (419)
.++|+++|.+|+|||||+|+|++........ ...+ ........+..+|. ++.+|||||+.+.... +
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 4899999999999999999999876544321 1222 23333444455553 6888999998765321 2
Q ss_pred HHHHHHHHHHHHH------------HHh--hcCEEEEEecCCC-CCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHH
Q psy17089 248 EVIEKFSVIKTLK------------SIL--EANVVILLLDAQQ-NISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRK 312 (419)
Q Consensus 248 ~~~e~~~~~~~~~------------~~~--~ad~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~ 312 (419)
..+..|...+... .+. ++|+++++++.+. +....|.++++.+.+ ++|+++|+||+|+....+..
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~~~e~~ 162 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLTPEELK 162 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCCHHHHH
Confidence 2222221111111 111 4789999999884 677888899999886 89999999999998766666
Q ss_pred HHHHHHHHHcCCCCCCcEEEEec
Q psy17089 313 IIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
...+.+.+.+...+ ++++..+.
T Consensus 163 ~~k~~i~~~l~~~~-i~~~~~~~ 184 (276)
T cd01850 163 EFKQRIMEDIEEHN-IKIYKFPE 184 (276)
T ss_pred HHHHHHHHHHHHcC-CceECCCC
Confidence 66666666665443 66666554
No 489
>KOG0073|consensus
Probab=99.65 E-value=1e-14 Score=117.53 Aligned_cols=147 Identities=18% Similarity=0.201 Sum_probs=112.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.+|.++|..|+||||+.++|.+... +....|.-.+.....+.+.++.+||..|+. .++.....|+..
T Consensus 17 ~riLiLGLdNsGKTti~~kl~~~~~----~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~---------~lr~~W~nYfes 83 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLLGEDT----DTISPTLGFQIKTLEYKGYTLNIWDVGGQK---------TLRSYWKNYFES 83 (185)
T ss_pred eEEEEEecCCCCchhHHHHhcCCCc----cccCCccceeeEEEEecceEEEEEEcCCcc---------hhHHHHHHhhhc
Confidence 4799999999999999999998752 223346667788899999999999999998 788888999999
Q ss_pred CCEEEEEEeCCCCCCHhH--HHHHHHHHh---cCCCEEEEEeccCCCCCCcc---------hhHH-hcCCCCeEEEeecc
Q psy17089 83 SDIIIFIVDGRQGLVEQD--KLITNFLRK---SGQPIVLVINKSENINSSIS---------LDFY-ELGIGNPHIISALY 147 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~~~--~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~---------~~~~-~~~~~~~~~vSa~~ 147 (419)
.|++++|+|+.++..-++ .++...|.. .+.|+++++||.|+...-.. .++. .... +.+-+||.+
T Consensus 84 tdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~-~l~~cs~~t 162 (185)
T KOG0073|consen 84 TDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHW-RLVKCSAVT 162 (185)
T ss_pred cCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCc-eEEEEeccc
Confidence 999999999876433222 333333332 68899999999999843322 1121 2223 678899999
Q ss_pred CCCHHHHHHHHHHhcC
Q psy17089 148 GNGIKNFLENILTIEL 163 (419)
Q Consensus 148 ~~~v~~l~~~i~~~~~ 163 (419)
|+++.+-++++...+.
T Consensus 163 ge~l~~gidWL~~~l~ 178 (185)
T KOG0073|consen 163 GEDLLEGIDWLCDDLM 178 (185)
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999999887554
No 490
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.64 E-value=2.1e-15 Score=136.41 Aligned_cols=160 Identities=25% Similarity=0.311 Sum_probs=119.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEE-CCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI-GKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
-|.+||-||+|||||+++++..+ ..+.+||+||..+.-+.+.. .+..+.+-|.||+.+...+ ..-+-..+++.+..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak-PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~--G~GLG~~FLrHIER 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK-PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASE--GVGLGLRFLRHIER 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC-CcccCCccccccCcccEEEecCCCcEEEecCccccccccc--CCCccHHHHHHHHh
Confidence 47899999999999999999765 45889999999999998887 4567999999999865311 11234556778899
Q ss_pred CCEEEEEEeCCCCC----CHhHHHHHHHHHh-----cCCCEEEEEeccCCCCCCcc-h---hHH--hcCCCCeEEEeecc
Q psy17089 83 SDIIIFIVDGRQGL----VEQDKLITNFLRK-----SGQPIVLVINKSENINSSIS-L---DFY--ELGIGNPHIISALY 147 (419)
Q Consensus 83 ~d~il~v~d~~~~~----~~~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~-~---~~~--~~~~~~~~~vSa~~ 147 (419)
+.++++|+|....- ...-..+..+|.. .++|.++|+||+|+...++. . ..+ ..+....+++||.+
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t 317 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALT 317 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhc
Confidence 99999999976322 2222556666665 47899999999997766655 1 222 22332333399999
Q ss_pred CCCHHHHHHHHHHhcCCcc
Q psy17089 148 GNGIKNFLENILTIELPYK 166 (419)
Q Consensus 148 ~~~v~~l~~~i~~~~~~~~ 166 (419)
++|+++|...+.+.+....
T Consensus 318 ~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 318 REGLDELLRALAELLEETK 336 (369)
T ss_pred ccCHHHHHHHHHHHHHHhh
Confidence 9999999999988776553
No 491
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=2.7e-15 Score=143.81 Aligned_cols=148 Identities=28% Similarity=0.395 Sum_probs=123.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEEC---CeEEEEEEcCCCCCcchhhHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG---KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQ 78 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 78 (419)
.|-|.++|+...|||||+..+-+.+.+ ...--++|++.....+.++ ...++++||||++ .|..+...
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va-~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHe---------AFt~mRaR 74 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHE---------AFTAMRAR 74 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccc-cccCCceeeEeeeEEEEeccCCCceEEEEcCCcHH---------HHHHHHhc
Confidence 378999999999999999999887643 3445579999888888884 4789999999998 66666666
Q ss_pred HHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc---hhHHhcCC--------CCeEEEeecc
Q psy17089 79 AIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFYELGI--------GNPHIISALY 147 (419)
Q Consensus 79 ~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~---~~~~~~~~--------~~~~~vSa~~ 147 (419)
-..-+|++++|+|+.+++.++..+-.+.++..+.|+++++||+|....... .+....|+ -.++++||++
T Consensus 75 Ga~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~t 154 (509)
T COG0532 75 GASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKT 154 (509)
T ss_pred CCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccC
Confidence 677889999999999999999999999999999999999999999866554 22222222 2568999999
Q ss_pred CCCHHHHHHHHH
Q psy17089 148 GNGIKNFLENIL 159 (419)
Q Consensus 148 ~~~v~~l~~~i~ 159 (419)
|.|+++|+..+.
T Consensus 155 g~Gi~eLL~~il 166 (509)
T COG0532 155 GEGIDELLELIL 166 (509)
T ss_pred CCCHHHHHHHHH
Confidence 999999998876
No 492
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.64 E-value=3.7e-15 Score=154.60 Aligned_cols=116 Identities=17% Similarity=0.202 Sum_probs=97.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCce-----ec------------CCCCCCccceEEEEEECCeEEEEEEcCCCCCcch
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDAL-----VA------------NYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK 65 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~-----~~------------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 65 (419)
++|+|+|++|+|||||+|+|+...+.. +. ...++|++.....+.+++.++.+|||||+.+
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~--- 87 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD--- 87 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc---
Confidence 699999999999999999997533221 11 1357888899999999999999999999973
Q ss_pred hhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCC
Q psy17089 66 KGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSS 127 (419)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~ 127 (419)
+......++..+|++++|+|+..+....+..++..+.+.++|+++|+||+|+....
T Consensus 88 ------~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 88 ------FTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGAN 143 (689)
T ss_pred ------hhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 33456778899999999999999888888888888888899999999999998654
No 493
>KOG0083|consensus
Probab=99.63 E-value=2.2e-16 Score=122.26 Aligned_cols=147 Identities=19% Similarity=0.165 Sum_probs=108.9
Q ss_pred EEEcCCCCCHHHHHHHHhCCCCceec-C-CCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 6 VLVGRPNVGKSTLFNRLTNSRDALVA-N-YPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 6 ~ivG~~~vGKSsl~n~l~~~~~~~~~-~-~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
+++|++++|||.|+-++-. +++.. . ..++.+|.....+..++. ++++|||+|++ +|+..+..+++
T Consensus 1 mllgds~~gktcllir~kd--gafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqe---------rfrsvt~ayyr 69 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKD--GAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQE---------RFRSVTHAYYR 69 (192)
T ss_pred CccccCccCceEEEEEecc--CceecCceeeeeeeccccceeccCCcEEEEEEeeccchH---------HHhhhhHhhhc
Confidence 3789999999999887743 33322 2 234567777777777775 56799999998 89999999999
Q ss_pred hCCEEEEEEeCCCCCCHhH-HHHHHHHHhc---CCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCCH
Q psy17089 82 ESDIIIFIVDGRQGLVEQD-KLITNFLRKS---GQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNGI 151 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~~-~~~~~~l~~~---~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~v 151 (419)
.+|..++++|..+.-+..+ ..|+..+.+. ...+.+++||||+...+.+ ..+. ..++ ++.++||++|.|+
T Consensus 70 da~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~i-pfmetsaktg~nv 148 (192)
T KOG0083|consen 70 DADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGI-PFMETSAKTGFNV 148 (192)
T ss_pred ccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCC-CceeccccccccH
Confidence 9999999999876544443 3344444433 4577899999999776554 2222 3455 7899999999999
Q ss_pred HHHHHHHHHhcCC
Q psy17089 152 KNFLENILTIELP 164 (419)
Q Consensus 152 ~~l~~~i~~~~~~ 164 (419)
+..|-.|++.+.+
T Consensus 149 d~af~~ia~~l~k 161 (192)
T KOG0083|consen 149 DLAFLAIAEELKK 161 (192)
T ss_pred hHHHHHHHHHHHH
Confidence 9999888876543
No 494
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.63 E-value=3.3e-15 Score=132.74 Aligned_cols=113 Identities=22% Similarity=0.276 Sum_probs=88.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecC---------------CCCCCccceEEEEEEC----------CeEEEEEEc
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVAN---------------YPGLTRDRHYGEGYIG----------KKSFIIIDT 57 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~---------------~~~~t~~~~~~~~~~~----------~~~~~liDt 57 (419)
++|+++|+.++|||||+++|+...+.+... ..++|.........+. +..+.+|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 579999999999999999998654322111 1244554444344443 567889999
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCC
Q psy17089 58 GGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124 (419)
Q Consensus 58 pG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~ 124 (419)
||+. .+......+++.+|++++|+|+..+.......+++.+...++|+++|+||+|+.
T Consensus 81 PG~~---------~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHV---------DFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CCcc---------ccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 9998 566678888999999999999999888888888887777789999999999975
No 495
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=2.3e-15 Score=140.83 Aligned_cols=163 Identities=23% Similarity=0.220 Sum_probs=125.1
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCcee--------------eecCCCCccceeeeEeeEEeC---e--eEEEEeCCCCC
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRV--------------ITYDTPGTTRDSIKSLFEYNN---K--KYILIDTAGIR 241 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~---~--~~~liDtpG~~ 241 (419)
...+.+++.+-..|||||..+|+..... ......|+|+......+.+.. . .+.++||||+.
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 4467899999999999999999743211 123456899988888877753 3 45679999998
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHH
Q psy17089 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKK 321 (419)
Q Consensus 242 ~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~ 321 (419)
++.- | ++ +.+..|.++++|+|++++...|.+.-.-.+.+.+..+|-|+||+||.. .+.+....++++.
T Consensus 88 DFsY-----E---VS---RSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~-Adpervk~eIe~~ 155 (603)
T COG0481 88 DFSY-----E---VS---RSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPA-ADPERVKQEIEDI 155 (603)
T ss_pred ceEE-----E---eh---hhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCC-CCHHHHHHHHHHH
Confidence 8861 2 22 455669999999999999888887767777789999999999999964 3445566777766
Q ss_pred cCCCCCCcEEEEeccCCCCHHHHHHHHHHHHhhcC
Q psy17089 322 LNFLSFAMFNFISAIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 322 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 356 (419)
+..- ....+.+|||+|.|++++++.|.+.++...
T Consensus 156 iGid-~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 156 IGID-ASDAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred hCCC-cchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 6532 246788999999999999999999877654
No 496
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.63 E-value=1.9e-14 Score=143.39 Aligned_cols=115 Identities=20% Similarity=0.353 Sum_probs=90.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCce---------------ecCC------CCCCccceEEEEEECCeEEEEEEcCCC
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDAL---------------VANY------PGLTRDRHYGEGYIGKKSFIIIDTGGF 60 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~---------------~~~~------~~~t~~~~~~~~~~~~~~~~liDtpG~ 60 (419)
+++|+|+|++|+|||||+++|+...+.+ ..++ .+.|.......+.+++..+.+|||||+
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 4789999999999999999997322111 0111 134444555668888999999999999
Q ss_pred CCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCC
Q psy17089 61 EPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENIN 125 (419)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~ 125 (419)
. .+...+..++..+|++++|+|+..+.......+++.++..++|+++++||+|+..
T Consensus 90 ~---------df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 90 E---------DFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDG 145 (526)
T ss_pred h---------hhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccc
Confidence 7 4555566778999999999999988877777888888888999999999999764
No 497
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.62 E-value=1.6e-14 Score=130.64 Aligned_cols=126 Identities=17% Similarity=0.233 Sum_probs=94.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcch-hhHHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK-KGIMHEMTKQTKQAII 81 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~-~~~~~~~~~~~~~~~~ 81 (419)
.+|+|+|++|||||||+|+|+|...+.++...+.|..+......++|..+.+|||||+.+... ....+.....+..++.
T Consensus 32 ~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~ 111 (249)
T cd01853 32 LTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLK 111 (249)
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHh
Confidence 589999999999999999999987776777777888888888888999999999999986531 1122233333444443
Q ss_pred --hCCEEEEEEeCC-CCCCHhHHHHHHHHHh-cC----CCEEEEEeccCCCCCCc
Q psy17089 82 --ESDIIIFIVDGR-QGLVEQDKLITNFLRK-SG----QPIVLVINKSENINSSI 128 (419)
Q Consensus 82 --~~d~il~v~d~~-~~~~~~~~~~~~~l~~-~~----~p~ilv~NK~Dl~~~~~ 128 (419)
..++++||.... .+....+..+++.+++ ++ .++++|+||+|......
T Consensus 112 ~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 112 KKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred ccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 578888887544 3466677777777775 33 58999999999876554
No 498
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=2.2e-14 Score=118.64 Aligned_cols=150 Identities=20% Similarity=0.242 Sum_probs=121.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCcee-----c-CCCC---CCccceEEEEEECC-eEEEEEEcCCCCCcchhhHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALV-----A-NYPG---LTRDRHYGEGYIGK-KSFIIIDTGGFEPEVKKGIMHEM 72 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~-----~-~~~~---~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~ 72 (419)
.||+|.|+.++||||++.+++....-.+ + ...+ +|.-..++...+++ ..+.++|||||. +|
T Consensus 11 ~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~---------RF 81 (187)
T COG2229 11 TKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQE---------RF 81 (187)
T ss_pred eeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcH---------HH
Confidence 5899999999999999999987653111 1 1112 56666667777766 789999999998 88
Q ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcC-CCEEEEEeccCCCCCCcc---hhHHhcC--CCCeEEEeec
Q psy17089 73 TKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSG-QPIVLVINKSENINSSIS---LDFYELG--IGNPHIISAL 146 (419)
Q Consensus 73 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~-~p~ilv~NK~Dl~~~~~~---~~~~~~~--~~~~~~vSa~ 146 (419)
...+....+++.++++++|++++.......+.+++...+ .|+++++||.|+...... .+++... .-++++.+|.
T Consensus 82 ~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a~ 161 (187)
T COG2229 82 KFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEIDAT 161 (187)
T ss_pred HHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeeeecc
Confidence 888888899999999999999888877788888888766 999999999999988776 4555444 2478999999
Q ss_pred cCCCHHHHHHHHHHh
Q psy17089 147 YGNGIKNFLENILTI 161 (419)
Q Consensus 147 ~~~~v~~l~~~i~~~ 161 (419)
.+++..+.++.+...
T Consensus 162 e~~~~~~~L~~ll~~ 176 (187)
T COG2229 162 EGEGARDQLDVLLLK 176 (187)
T ss_pred cchhHHHHHHHHHhh
Confidence 999999888887765
No 499
>KOG0075|consensus
Probab=99.62 E-value=6e-15 Score=116.42 Aligned_cols=146 Identities=21% Similarity=0.229 Sum_probs=114.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhC
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 83 (419)
.+.++|-.++|||||.|.+.... .......|+....+.+.-+...+.+||.||+- ++......+.+++
T Consensus 22 el~lvGLq~sGKtt~Vn~ia~g~---~~edmiptvGfnmrk~tkgnvtiklwD~gGq~---------rfrsmWerycR~v 89 (186)
T KOG0075|consen 22 ELSLVGLQNSGKTTLVNVIARGQ---YLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP---------RFRSMWERYCRGV 89 (186)
T ss_pred eEEEEeeccCCcceEEEEEeecc---chhhhcccccceeEEeccCceEEEEEecCCCc---------cHHHHHHHHhhcC
Confidence 47899999999999999887543 22333556777778888888999999999998 8889999999999
Q ss_pred CEEEEEEeCCCC--CCHhHHHHHHHHHh---cCCCEEEEEeccCCCCCCcchhHH-hcCCC-------CeEEEeeccCCC
Q psy17089 84 DIIIFIVDGRQG--LVEQDKLITNFLRK---SGQPIVLVINKSENINSSISLDFY-ELGIG-------NPHIISALYGNG 150 (419)
Q Consensus 84 d~il~v~d~~~~--~~~~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~~~~-~~~~~-------~~~~vSa~~~~~ 150 (419)
++++||+|+.++ .+..-.++..+|.+ .++|+++.+||.|+...-...++. ..|+. -.|.+|+++..|
T Consensus 90 ~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~N 169 (186)
T KOG0075|consen 90 SAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVN 169 (186)
T ss_pred cEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCcc
Confidence 999999998764 33444666677765 588999999999987765543332 33331 238899999999
Q ss_pred HHHHHHHHHHh
Q psy17089 151 IKNFLENILTI 161 (419)
Q Consensus 151 v~~l~~~i~~~ 161 (419)
++.+.+++.+.
T Consensus 170 id~~~~Wli~h 180 (186)
T KOG0075|consen 170 IDITLDWLIEH 180 (186)
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 500
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.62 E-value=5.1e-15 Score=133.88 Aligned_cols=194 Identities=23% Similarity=0.248 Sum_probs=139.0
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceee--------------------------------ecCCCCccceeeeEeeEEe
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVI--------------------------------TYDTPGTTRDSIKSLFEYN 228 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~--------------------------------~~~~~~~t~~~~~~~~~~~ 228 (419)
..++++.+|...-||||||-+|+...... .....|+|+|..+..+.-+
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 56899999999999999999998432211 1123388999888888888
Q ss_pred CeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCc-EEEEEEcccCCC
Q psy17089 229 NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRS-LIVCVNKWDSII 307 (419)
Q Consensus 229 ~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~ 307 (419)
.++|++.||||+ |+|- +.+......||++|+++|+..+...|..+..-...-.+++ +++++||+||++
T Consensus 85 KRkFIiADTPGH----------eQYT-RNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvd 153 (431)
T COG2895 85 KRKFIIADTPGH----------EQYT-RNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVD 153 (431)
T ss_pred cceEEEecCCcH----------HHHh-hhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccc
Confidence 899999999999 5553 3444567789999999999999988888866666656654 788999999986
Q ss_pred hh--hHHHHHHHHHHHcCCCC--CCcEEEEeccCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCCCCCCCC
Q psy17089 308 HN--QRKIIKNNIKKKLNFLS--FAMFNFISAIKLNNINSFMESINHVYDSSIIHLSTSRITRALISAIKNHPPCRKKLI 383 (419)
Q Consensus 308 ~~--~~~~~~~~~~~~~~~~~--~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 383 (419)
-. ..+.+..++..+.+.++ ...++|+||..|.|+-.- .....++....+-+.|+..-.+....
T Consensus 154 y~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~--------s~~mpWY~GptLLe~LE~v~i~~~~~----- 220 (431)
T COG2895 154 YSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVSK--------SENMPWYKGPTLLEILETVEIADDRS----- 220 (431)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccccc--------ccCCCcccCccHHHHHhhcccccccc-----
Confidence 43 33555555555544443 247899999999997442 34556666677777776553322211
Q ss_pred ceeEEEEecCCCCCC
Q psy17089 384 RPKLRYAHQGGKNPP 398 (419)
Q Consensus 384 ~~~~~~~~q~~~~~p 398 (419)
.-.+++.+|.-.||.
T Consensus 221 ~~~~RfPVQ~V~Rp~ 235 (431)
T COG2895 221 AKAFRFPVQYVNRPN 235 (431)
T ss_pred ccceeeceEEecCCC
Confidence 112788888877775
Done!